Psyllid ID: psy3701

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MLAHPLSLQELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPGNY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mlahplslqellggegvsfFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLigrsdparrflgkatsldklflpawlmyghsfavenEHDQAMAAYFNAFNlfkgchlpaLYVGlecgltnnaRLASKFFDLALsiahedpfvihEMGVIAYQNHNYTVAENCFMEALSKVKQLGgeiiadkwepllnnlghkaEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIeesppfpgny
Flexible Loop (DISEMBL)
MLAHPLSLQELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQlieesppfpgny
Low Complexity Region (SEG)
MLAHPLSLQELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPGNY
Disordered region (IsUnstruct)
********QELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI**********
Disordered Region (DISOPRED)
****PLSLQELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES*PFPGNY
Disordered Region (DISEMBL)
MLAHPLSLQELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPGNY
Disordered Region (DISPRO)
**AHPLSLQELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFP*NY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLAHPLSLQELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNxxxxxxxxxxxxxxxxxxxxxLVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPGNY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q13042	620	Cell division cycle prote	yes	N/A	0.736	0.406	0.539	4e-86
Q8R349	620	Cell division cycle prote	yes	N/A	0.736	0.406	0.542	4e-86
B3DNN5	543	Anaphase-promoting comple	yes	N/A	0.690	0.434	0.374	6e-46
Q1ZXE6	865	Anaphase-promoting comple	yes	N/A	0.713	0.282	0.345	2e-40
P41889	671	Anaphase-promoting comple	yes	N/A	0.698	0.356	0.302	2e-34
P09798	840	Anaphase-promoting comple	yes	N/A	0.695	0.283	0.322	5e-32
Q4V8A2	824	Cell division cycle prote	no	N/A	0.599	0.248	0.231	5e-05
A2A6Q5	825	Cell division cycle prote	no	N/A	0.599	0.248	0.231	6e-05
A7Z061	825	Cell division cycle prote	no	N/A	0.599	0.248	0.231	6e-05
P30260	824	Cell division cycle prote	no	N/A	0.599	0.248	0.231	6e-05

>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2

 Score =  318 bits (815), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/280 (53%), Positives = 200/280 (71%), Gaps = 28/280 (10%)

Query: 62  DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
           +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct: 283 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 342

Query: 121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
           SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct: 343 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 402

Query: 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
           FV+HE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLN             
Sbjct: 403 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN------------- 449

Query: 241 GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300
                         NLGHV RKLKKY EAL++H+QALV+ P  AST+  IGYI +L G+ 
Sbjct: 450 --------------NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 495

Query: 301 DSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
           ++AV+YFH  + L+RDD+F+ TML + IE  I +S  + G
Sbjct: 496 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 535

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.
Homo sapiens (taxid: 9606)

>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1

 Score =  318 bits (815), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 152/280 (54%), Positives = 200/280 (71%), Gaps = 28/280 (10%)

Query: 62  DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
           +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct: 283 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 342

Query: 121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
           SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct: 343 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFGQALSIAPEDP 402

Query: 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
           FVIHE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLN             
Sbjct: 403 FVIHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN------------- 449

Query: 241 GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300
                         NLGHV RKLKKY EAL++H+QALV+ P  AST+  IGYI +L G+ 
Sbjct: 450 --------------NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF 495

Query: 301 DSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
           ++AV+YFH  + L+RDD+F+ TML + IE  I +S  + G
Sbjct: 496 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 535

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 100/267 (37%), Positives = 147/267 (55%), Gaps = 31/267 (11%)

Query: 62  DLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHS 121
           +L+ +A  LV  YP  A++W+AVGCYYY I +   ARR+  KAT +D  F PA + YG+S
Sbjct: 293 ELYLMACNLVKDYPSKALSWFAVGCYYYCIKKYAEARRYFSKATGIDGSFSPARIGYGNS 352

Query: 122 FAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF 181
           FA + E DQAM+AY  A  LF GCHLP LY+G+E   T++ +LA +FF  A +I   DP 
Sbjct: 353 FAAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMEYMRTHSYKLADQFFMQAKAICPSDPL 412

Query: 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
           V +E+GV+AY    Y  A   F + L+ +       + + WE                  
Sbjct: 413 VYNELGVVAYHMKEYGKAVRWFEKTLAHIPS----ALTESWE------------------ 450

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                    P + NL H  RKL+K  EA+ ++++AL ++    ST+  + Y   L G+  
Sbjct: 451 ---------PTVVNLAHAYRKLRKDREAISYYERALTLSTKSLSTYSGLAYTYHLQGNFS 501

Query: 302 SAVNYFHKTMALKRDDSFATTMLSYVI 328
           +A++Y+HK + LK DD F T ML+  +
Sbjct: 502 AAISYYHKALWLKPDDQFCTEMLNVAL 528

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ZXE6|CDC16_DICDI Anaphase-promoting complex subunit 6 OS=Dictyostelium discoideum GN=anapc6 PE=3 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 144/284 (50%), Gaps = 40/284 (14%)

Query: 78  AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFN 137
           AI+WY V CYY+LI  SD  +RF  K+T+LD     +WL +GH FA + EHDQAMAAY  
Sbjct: 573 AISWYGVACYYHLIQNSDQTQRFFTKSTTLDSRMGASWLGFGHFFASKGEHDQAMAAYRT 632

Query: 138 AFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197
           +  L  GCHLP L +G+E    +N  LAS++   A  I   DP + +E+G+I Y+N  Y 
Sbjct: 633 SSRLLTGCHLPLLCIGMELIRVHNLNLASQYILQAKDICPYDPMIFNELGIIEYKNSQYN 692

Query: 198 VAENCFMEALS----KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG------------ 241
            A   F  AL     K K       +  +  L  NL + +   V   G            
Sbjct: 693 EAIKLFETALEICKIKSKASSSSSSSSNYHNL--NLSNISFSGVGSSGIGNNNNNNNNRR 750

Query: 242 -------------------GEIIA--DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280
                                +IA  + WEP + NL H  RKL+K+E AL ++  +L + 
Sbjct: 751 TTTTTTTTSNNQKKNSSNNKTMIAYLESWEPTIYNLAHCYRKLRKFELALHYYTMSLSLL 810

Query: 281 PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324
           P   ST+  +G+   L G+ D A++Y+H+++++ RDD+F   +L
Sbjct: 811 PNNPSTYSALGFTHHLQGNFDEAIDYYHQSLSI-RDDTFTNVLL 853

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.

Dictyostelium discoideum (taxid: 44689)

>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 29/268 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           L+ ++++LVD +P+ A+ W AVG YY  + +   ARR+  K++++D  F PAW+ + HSF
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF 417

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           A+E EHDQA++AY  A  LF+G HLP L++G++     N  LA+++   + ++   DP +
Sbjct: 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
           ++E+GV+A+   +   A N F  AL  VK                    K +   K    
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVK--------------------KTQSNEK---- 513

Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302
                 W     NLGH  RKLK Y+ A++   Q L+++   A+    I  +         
Sbjct: 514 -----PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568

Query: 303 AVNYFHKTMALKRDDSFATTMLSYVIEQ 330
           A+ + H+++A+  ++  A+ +L   +E+
Sbjct: 569 AITHLHESLAISPNEIMASDLLKRALEE 596

Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. May play a pivotal role in the control of anaphase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1 SV=1

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 29/267 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           LF L+H L + +P SAI W++V  YY  + R   A+++  K++ LD  F  AWL + H++
Sbjct: 516 LFLLSHRLAETFPKSAITWFSVATYYMSLDRISEAQKYYSKSSILDPSFAAAWLGFAHTY 575

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           A+E E DQA+ AY  A   F G HLP L++G++    N+  LA  +F LA  I   DP V
Sbjct: 576 ALEGEQDQALTAYSTASRFFPGMHLPKLFLGMQFMAMNSLNLAESYFVLAYDICPNDPLV 635

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
           ++EMGV+ ++ + +  A+    +AL  VK L                     D   +   
Sbjct: 636 LNEMGVMYFKKNEFVKAKKYLKKALEVVKDL---------------------DPSSRTTI 674

Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302
            I          NLGH  RKL + E A++  +  L      +   C +GY+   T  L  
Sbjct: 675 SIQL--------NLGHTYRKLNENEIAIKCFRCVLEKNDKNSEIHCSLGYLYLKTKKLQK 726

Query: 303 AVNYFHKTMALKRDDSFATTMLSYVIE 329
           A+++ HK++ LK ++S AT +L   +E
Sbjct: 727 AIDHLHKSLYLKPNNSSATALLKNALE 753

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q4V8A2|CDC27_RAT Cell division cycle protein 27 homolog OS=Rattus norvegicus GN=Cdc27 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 50/255 (19%)

Query: 66  LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE 125
           L+ +L D+  +S  AW A G  + L    D A +F  +A  +D  +  A+ + GH F + 
Sbjct: 555 LSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLT 614

Query: 126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHE 185
            E D+A+A + NA  +                   N R  + ++ L              
Sbjct: 615 EELDKALACFRNAIRV-------------------NPRHYNAWYGL-------------- 641

Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG------HKAEDKVKQ 239
            G+I Y+   +++AE  F +AL          I  +   LL ++G       K+E  +  
Sbjct: 642 -GMIYYKQEKFSLAEMHFQKALD---------INPQSSVLLCHIGVVQHALKKSEKALDT 691

Query: 240 LGGEIIADKWEPLLN-NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298
           L   I+ D   PL   +   V    +KY+ AL+  ++   + P ++  +  IG +    G
Sbjct: 692 LNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLG 751

Query: 299 DLDSAVNYFHKTMAL 313
               A+  F   M L
Sbjct: 752 QTHLALMNFSWAMDL 766

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Rattus norvegicus (taxid: 10116)

>sp|A2A6Q5|CDC27_MOUSE Cell division cycle protein 27 homolog OS=Mus musculus GN=Cdc27 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 50/255 (19%)

Query: 66  LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE 125
           L+ +L D+  +S  AW A G  + L    D A +F  +A  +D  +  A+ + GH F + 
Sbjct: 556 LSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLT 615

Query: 126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHE 185
            E D+A+A + NA  +                   N R  + ++ L              
Sbjct: 616 EELDKALACFRNAIRV-------------------NPRHYNAWYGL-------------- 642

Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG------HKAEDKVKQ 239
            G+I Y+   +++AE  F +AL          I  +   LL ++G       K+E  +  
Sbjct: 643 -GMIYYKQEKFSLAEMHFQKALD---------INPQSSVLLCHIGVVQHALKKSEKALDT 692

Query: 240 LGGEIIADKWEPLLN-NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298
           L   I+ D   PL   +   V    +KY+ AL+  ++   + P ++  +  IG +    G
Sbjct: 693 LNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLG 752

Query: 299 DLDSAVNYFHKTMAL 313
               A+  F   M L
Sbjct: 753 QTHLALMNFSWAMDL 767

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|A7Z061|CDC27_BOVIN Cell division cycle protein 27 homolog OS=Bos taurus GN=CDC27 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 50/255 (19%)

Query: 66  LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE 125
           L+ +L D+  +S  AW A G  + L    D A +F  +A  +D  +  A+ + GH F + 
Sbjct: 556 LSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLT 615

Query: 126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHE 185
            E D+A+A + NA  +                   N R  + ++ L              
Sbjct: 616 EELDKALACFRNAIRV-------------------NPRHYNAWYGL-------------- 642

Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG------HKAEDKVKQ 239
            G+I Y+   +++AE  F +AL          I  +   LL ++G       K+E  +  
Sbjct: 643 -GMIYYKQEKFSLAEMHFQKALD---------INPQSSVLLCHIGVVQHALKKSEKALDT 692

Query: 240 LGGEIIADKWEPLLN-NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298
           L   I+ D   PL   +   V    +KY+ AL+  ++   + P ++  +  IG +    G
Sbjct: 693 LNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLG 752

Query: 299 DLDSAVNYFHKTMAL 313
               A+  F   M L
Sbjct: 753 QTHLALMNFSWAMDL 767

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Bos taurus (taxid: 9913)

>sp|P30260|CDC27_HUMAN Cell division cycle protein 27 homolog OS=Homo sapiens GN=CDC27 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 50/255 (19%)

Query: 66  LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE 125
           L+ +L D+  +S  AW A G  + L    D A +F  +A  +D  +  A+ + GH F + 
Sbjct: 555 LSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLT 614

Query: 126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHE 185
            E D+A+A + NA  +                   N R  + ++ L              
Sbjct: 615 EELDKALACFRNAIRV-------------------NPRHYNAWYGL-------------- 641

Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG------HKAEDKVKQ 239
            G+I Y+   +++AE  F +AL          I  +   LL ++G       K+E  +  
Sbjct: 642 -GMIYYKQEKFSLAEMHFQKALD---------INPQSSVLLCHIGVVQHALKKSEKALDT 691

Query: 240 LGGEIIADKWEPLLN-NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298
           L   I+ D   PL   +   V    +KY+ AL+  ++   + P ++  +  IG +    G
Sbjct: 692 LNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLG 751

Query: 299 DLDSAVNYFHKTMAL 313
               A+  F   M L
Sbjct: 752 QTHLALMNFSWAMDL 766

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
383856906	640	PREDICTED: cell division cycle protein 1	0.730	0.390	0.597	3e-92
340713132	651	PREDICTED: cell division cycle protein 1	0.733	0.385	0.591	2e-91
350417067	639	PREDICTED: cell division cycle protein 1	0.733	0.392	0.591	3e-91
380015507	640	PREDICTED: cell division cycle protein 1	0.728	0.389	0.595	7e-91
328777568	640	PREDICTED: cell division cycle protein 1	0.728	0.389	0.592	2e-90
189241787	630	PREDICTED: similar to CDC16 cell divisio	0.733	0.398	0.582	4e-89
47220146	453	unnamed protein product [Tetraodon nigro	0.839	0.633	0.488	7e-89
307212645	568	Cell division cycle protein 16-like prot	0.736	0.443	0.578	9e-89
443723207	608	hypothetical protein CAPTEDRAFT_173883 [	0.736	0.414	0.564	1e-88
156551107	633	PREDICTED: cell division cycle protein 1	0.730	0.394	0.571	8e-88

>gi|383856906|ref|XP_003703947.1| PREDICTED: cell division cycle protein 16 homolog [Megachile rotundata]

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 166/278 (59%), Positives = 200/278 (71%), Gaps = 28/278 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           LF LAH+LVDLYPD A+AW+AVGCYYY IG+SDPARR+L KAT+LD+LF PAWL YGHSF
Sbjct: 295 LFYLAHKLVDLYPDMALAWFAVGCYYYSIGKSDPARRYLAKATALDRLFGPAWLAYGHSF 354

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           AVENEHDQAMAAYF A  L KGCHLP LY+GLECGLTNN +LA KFF  A  IA  DPFV
Sbjct: 355 AVENEHDQAMAAYFKASQLMKGCHLPLLYIGLECGLTNNLKLADKFFQQAQGIASNDPFV 414

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVK-QLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
           IHEMGVI++ N +Y  AE  F EA+ +++  L   I+  KWE LLNNLGH          
Sbjct: 415 IHEMGVISFYNLDYKTAERQFKEAMKRIQGGLKDVILPSKWEALLNNLGHTC-------- 466

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                              RK+KKYEEALE+H+QALV+ P+  ST+  +G+I AL G+  
Sbjct: 467 -------------------RKMKKYEEALEYHQQALVLNPLNPSTYSAVGFIHALMGNTQ 507

Query: 302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFP 339
            AV+ FH+ + L+RDD+F TTML+YV+EQLIEESPP+P
Sbjct: 508 EAVDAFHRALGLRRDDTFTTTMLTYVMEQLIEESPPYP 545

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713132|ref|XP_003395102.1| PREDICTED: cell division cycle protein 16 homolog [Bombus terrestris]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 165/279 (59%), Positives = 201/279 (72%), Gaps = 28/279 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           LF LAH+LVDLYPD A+AW+AVGCYYY +G+SDPARR+L KAT+LD+LF PAWL YGHSF
Sbjct: 307 LFYLAHKLVDLYPDMALAWFAVGCYYYSLGKSDPARRYLAKATALDRLFGPAWLAYGHSF 366

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           AVENEHDQAMAAYF A  L KGCHLP LY+GLECGLTNN +LA KFF  A  IA  DPFV
Sbjct: 367 AVENEHDQAMAAYFKASQLMKGCHLPLLYIGLECGLTNNLKLADKFFQQAQGIAPNDPFV 426

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVK-QLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
           IHEMGVI++ N +Y  AE  F EA+ +++  L   I+  KWE LLNNLGH          
Sbjct: 427 IHEMGVISFYNLDYKTAERQFKEAMKRIQGGLKDVILPSKWEALLNNLGHTC-------- 478

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                              RK+KKY EALE+H+QAL++ P+ AST+  +G+I AL G+  
Sbjct: 479 -------------------RKMKKYGEALEYHQQALMLNPLNASTYSAVGFIHALMGNTQ 519

Query: 302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
            AV+ FH+ + L+RDD+F TTML+YV+EQLIEESPP+PG
Sbjct: 520 EAVDAFHRALGLRRDDTFTTTMLTYVMEQLIEESPPYPG 558

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417067|ref|XP_003491240.1| PREDICTED: cell division cycle protein 16 homolog [Bombus impatiens]

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 165/279 (59%), Positives = 201/279 (72%), Gaps = 28/279 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           LF LAH+LVDLYPD A+AW+AVGCYYY +G+SDPARR+L KAT+LD+LF PAWL YGHSF
Sbjct: 295 LFYLAHKLVDLYPDMALAWFAVGCYYYSLGKSDPARRYLAKATALDRLFGPAWLAYGHSF 354

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           AVENEHDQAMAAYF A  L KGCHLP LY+GLECGLTNN +LA KFF  A  IA  DPFV
Sbjct: 355 AVENEHDQAMAAYFKASQLMKGCHLPLLYIGLECGLTNNLKLADKFFQQAQGIAPNDPFV 414

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVK-QLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
           IHEMGVI++ N +Y  AE  F EA+ +++  L   I+  KWE LLNNLGH          
Sbjct: 415 IHEMGVISFYNLDYKTAERQFKEAMKRIQGGLKDVILPSKWEALLNNLGHTC-------- 466

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                              RK+KKY EALE+H+QAL++ P+ AST+  +G+I AL G+  
Sbjct: 467 -------------------RKMKKYGEALEYHQQALMLNPLNASTYSAVGFIHALMGNAQ 507

Query: 302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
            AV+ FH+ + L+RDD+F TTML+YV+EQLIEESPP+PG
Sbjct: 508 EAVDAFHRALGLRRDDTFTTTMLTYVMEQLIEESPPYPG 546

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015507|ref|XP_003691742.1| PREDICTED: cell division cycle protein 16 homolog [Apis florea]

 Score =  340 bits (871), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 165/277 (59%), Positives = 200/277 (72%), Gaps = 28/277 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           LF LAH+LVDLYPD A+AW+AVGCYYY IG+SDPARR+L KAT+LD+LF PAWL YGHSF
Sbjct: 295 LFYLAHKLVDLYPDMALAWFAVGCYYYSIGKSDPARRYLAKATALDRLFGPAWLAYGHSF 354

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           AVENEHDQAMAAYF A  L KGCHLP LY+GLECGLTNN +LA KFF  A SIA  DPFV
Sbjct: 355 AVENEHDQAMAAYFKASQLMKGCHLPLLYIGLECGLTNNLKLADKFFQQAQSIAPNDPFV 414

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVK-QLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
           IHEMGVI++ N +Y  AE  F EA+ +++  L   I+  KWE LLNNLGH          
Sbjct: 415 IHEMGVISFYNLDYKTAERQFKEAMKRIQGGLKDVILPSKWEALLNNLGHTC-------- 466

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                              RK+KKY EALE+H+QAL++ P+ AST+  +G+I AL G+  
Sbjct: 467 -------------------RKMKKYGEALEYHQQALMLNPLNASTYSAVGFIHALIGNTQ 507

Query: 302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPF 338
            AV+ FH+ + L+RDD+F TTML+YV+EQLIEESPP+
Sbjct: 508 EAVDAFHRALGLRRDDTFTTTMLTYVMEQLIEESPPY 544

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777568|ref|XP_623316.2| PREDICTED: cell division cycle protein 16 homolog [Apis mellifera]

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/277 (59%), Positives = 200/277 (72%), Gaps = 28/277 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           LF LAH+LVDLYPD A+AW+AVGCYYY IG+SDPARR+L KAT+LD+LF PAWL YGHSF
Sbjct: 295 LFYLAHKLVDLYPDMALAWFAVGCYYYSIGKSDPARRYLAKATALDRLFGPAWLAYGHSF 354

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           AVENEHDQAMAAYF A  L KGCHLP LY+GLECGLTNN +LA KFF  A +IA  DPFV
Sbjct: 355 AVENEHDQAMAAYFKASQLMKGCHLPLLYIGLECGLTNNLKLADKFFQQAQNIAPNDPFV 414

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVK-QLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
           IHEMGVI++ N +Y  AE  F EA+ +++  L   I+  KWE LLNNLGH          
Sbjct: 415 IHEMGVISFYNLDYKTAERQFKEAMKRIQGGLKDVILPSKWEALLNNLGHTC-------- 466

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                              RK+KKY EALE+H+QAL++ P+ AST+  +G+I AL G+  
Sbjct: 467 -------------------RKMKKYGEALEYHQQALMLNPLNASTYSAVGFIHALIGNTQ 507

Query: 302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPF 338
            AV+ FH+ + L+RDD+F TTML+YV+EQLIEESPP+
Sbjct: 508 EAVDAFHRALGLRRDDTFTTTMLTYVMEQLIEESPPY 544

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241787|ref|XP_969759.2| PREDICTED: similar to CDC16 cell division cycle 16 homolog (S. cerevisiae) [Tribolium castaneum]

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 163/280 (58%), Positives = 199/280 (71%), Gaps = 29/280 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           LF LAH LVDLYP  AI+W+AVGCYYY+IG++D ARR+L KAT LD+LF PAWL YGHSF
Sbjct: 332 LFSLAHNLVDLYPSLAISWFAVGCYYYIIGKNDCARRYLSKATCLDRLFGPAWLAYGHSF 391

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           A+ENEHDQAMAAYF A  L KGCHLP LY+GLECGLTNN RLA KFF  A +IA +DPFV
Sbjct: 392 AIENEHDQAMAAYFKASQLMKGCHLPLLYIGLECGLTNNVRLAEKFFKQAQNIAPDDPFV 451

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG--EIIADKWEPLLNNLGHKAEDKVKQL 240
           +HEMGVIA+QN N+  AE  F +AL++++++    +II  +W  LLNNLGH         
Sbjct: 452 MHEMGVIAFQNLNFKGAEKHFKDALARIRKVKSNPDIIPKRWHGLLNNLGHTC------- 504

Query: 241 GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300
                               RKLKKYEEAL+FH QAL++AP  AST+  I ++ AL G  
Sbjct: 505 --------------------RKLKKYEEALDFHHQALLLAPQSASTYSAIAFVHALMGHT 544

Query: 301 DSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
           + AV++FHK + L+ DDSF TTML+YVIEQL EE P +PG
Sbjct: 545 EEAVDWFHKALGLRIDDSFCTTMLNYVIEQLAEEKPAYPG 584

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47220146|emb|CAG07287.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 166/340 (48%), Positives = 225/340 (66%), Gaps = 53/340 (15%)

Query: 28  SEMKSALLLLKGRVYEALENRALAADCYKGALLAD---------------------LFKL 66
           + + S++ LL+G++Y+A+ NR LA   YK AL  D                     LF L
Sbjct: 126 ASVSSSICLLRGKIYDAMGNRPLATSSYKEALKLDVYCFEAFDLLTSHHMLTAQEELFYL 185

Query: 67  AHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE 125
           +H+LVDLYP++ ++W+AVGCYY ++G +++ ARR+L KAT+L++ + PAW+ YGHSFAVE
Sbjct: 186 SHKLVDLYPNNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLERTYGPAWIAYGHSFAVE 245

Query: 126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHE 185
           +EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDPFVIHE
Sbjct: 246 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVIHE 305

Query: 186 MGVIAYQNHNYTV----AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
           +GV+A++    T+    AE  F+EA+ K+K +G E+  DKWEPLLN              
Sbjct: 306 VGVVAFRYKGVTLGWKAAERYFLEAMEKIKAIGNEVTVDKWEPLLN-------------- 351

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                        NLGHV RKLKKYE+ALE+H+QALV+ P  AST+  IGY+ +L GD +
Sbjct: 352 -------------NLGHVCRKLKKYEQALEYHRQALVLIPQHASTYSAIGYVHSLMGDFE 398

Query: 302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPGN 341
           SA++YFH  + LKRDD+F+ TML + IE  I ++  + G 
Sbjct: 399 SAIDYFHTALGLKRDDTFSVTMLGHCIEMYIGDTDAYIGR 438

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307212645|gb|EFN88348.1| Cell division cycle protein 16-like protein [Harpegnathos saltator]

 Score =  333 bits (853), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 162/280 (57%), Positives = 197/280 (70%), Gaps = 28/280 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           LF LAH+LVDLYP+ A+AW+AVGCYYY I +SD ARR+L KAT+LD+LF PAWL YGHSF
Sbjct: 307 LFYLAHKLVDLYPEMALAWFAVGCYYYSIDKSDQARRYLAKATALDRLFGPAWLAYGHSF 366

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           AVENEHDQAMAAYF A  L KGCHLP LY+GLECGLTNN +LA KFF  A  IA  DPFV
Sbjct: 367 AVENEHDQAMAAYFKASQLMKGCHLPLLYIGLECGLTNNIKLADKFFQQAQGIAPNDPFV 426

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLGHKAEDKVKQLG 241
           IHEMGVI + N +Y  AE  F EA+ +++    ++ +  KWE LLNNLGH          
Sbjct: 427 IHEMGVICFYNLDYKNAERLFKEAMKRIQGDPKDVLLPSKWEALLNNLGHTC-------- 478

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                              RK+KKYEEAL +H+QALV+ P+  ST+  IGYI ALTG+  
Sbjct: 479 -------------------RKMKKYEEALGYHQQALVLDPLNPSTYSAIGYIHALTGNTQ 519

Query: 302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPGN 341
            AV+ FH+ + L+RDD+F TTML YV+EQLI+E+PP+PG 
Sbjct: 520 EAVDAFHRALGLRRDDTFTTTMLGYVMEQLIDETPPYPGT 559

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443723207|gb|ELU11738.1| hypothetical protein CAPTEDRAFT_173883 [Capitella teleta]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 158/280 (56%), Positives = 201/280 (71%), Gaps = 28/280 (10%)

Query: 62  DLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHS 121
           +LF LAH+LVDLYP+ A+AW+AVGCYY+L+G+ +PARR+L KATSLD++F P WL +GHS
Sbjct: 282 ELFYLAHKLVDLYPEKAVAWFAVGCYYFLVGKHEPARRYLSKATSLDRVFGPGWLAFGHS 341

Query: 122 FAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF 181
           FA ENEHDQAMAAYF A  + KGCHLP LY+GLE GLTNN +LA +FF  ALSIA EDPF
Sbjct: 342 FAAENEHDQAMAAYFTASQIMKGCHLPVLYIGLEYGLTNNPKLAERFFTQALSIASEDPF 401

Query: 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG-EIIADKWEPLLNNLGHKAEDKVKQL 240
           V+HEMGVI++QN  Y  AE+  M AL ++++ G  E++ +KWEPLL              
Sbjct: 402 VLHEMGVISFQNQKYEQAESYLMSALEQIQKAGDKEVMVEKWEPLL-------------- 447

Query: 241 GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300
                        +NLGHV RKLKKYEEAL+FH+QALV++P   STF  +G+I +L G  
Sbjct: 448 -------------SNLGHVCRKLKKYEEALDFHRQALVLSPQNPSTFSAMGFIFSLNGQA 494

Query: 301 DSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
             AV+YFHK + L+RDD+F+TTML Y IEQL+ +  P  G
Sbjct: 495 AEAVDYFHKALGLRRDDTFSTTMLGYAIEQLMSDISPCEG 534

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|156551107|ref|XP_001603275.1| PREDICTED: cell division cycle protein 16 homolog [Nasonia vitripennis]

 Score =  330 bits (845), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 159/278 (57%), Positives = 196/278 (70%), Gaps = 28/278 (10%)

Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           LF LAH+LVDLYPD A++W+AVGCYYY IG+SDPARR+L KATSLD+LF PAWL YGHSF
Sbjct: 307 LFYLAHKLVDLYPDLALSWFAVGCYYYSIGKSDPARRYLAKATSLDRLFGPAWLAYGHSF 366

Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           AVENEHDQAMAAYF A  L KGCHLP LY+GLECGLTNN +LA KFF  A SIA +DPFV
Sbjct: 367 AVENEHDQAMAAYFKASQLMKGCHLPLLYIGLECGLTNNLKLADKFFQQAQSIAPDDPFV 426

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQ-LGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
           IHE  VIA+ N ++  AE  F EA+ K++  L   I+ +KWE LLNNLGH          
Sbjct: 427 IHETAVIAFYNLDFKTAEKQFKEAMKKIQNGLKDVILPNKWESLLNNLGHTC-------- 478

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                              RK+KKYEEAL++H+QALV+ P+  +T+  IG+I AL G+  
Sbjct: 479 -------------------RKMKKYEEALDYHQQALVLNPLNPATYSAIGFIHALMGNTQ 519

Query: 302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFP 339
            A++  H+ + L+RDD+F TT+L +V+EQ I E PPFP
Sbjct: 520 EAIDACHRALGLRRDDTFTTTLLGFVMEQFINECPPFP 557

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
MGI|MGI:1917207	620	Cdc16 "CDC16 cell division cyc	0.792	0.437	0.459	1.1e-70
RGD|1305076	620	Cdc16 "cell division cycle 16"	0.792	0.437	0.459	1.1e-70
UNIPROTKB|Q13042	620	CDC16 "Cell division cycle pro	0.792	0.437	0.456	1.8e-70
UNIPROTKB|Q7Z651	526	CDC16 "CDC16 cell division cyc	0.792	0.515	0.456	1.8e-70
UNIPROTKB|E2R5H6	620	CDC16 "Uncharacterized protein	0.792	0.437	0.456	1.8e-70
UNIPROTKB|F1P4A5	623	CDC16 "Uncharacterized protein	0.710	0.390	0.472	2.3e-70
UNIPROTKB|E1BPM5	620	CDC16 "Uncharacterized protein	0.792	0.437	0.456	2.3e-70
UNIPROTKB|I3L944	620	CDC16 "Uncharacterized protein	0.792	0.437	0.456	2.3e-70
ZFIN|ZDB-GENE-051113-132	616	cdc16 "cell division cycle 16	0.710	0.394	0.464	1.6e-67
FB|FBgn0025781	719	Cdc16 "Cell division cycle 16	0.619	0.294	0.506	4.2e-61

MGI|MGI:1917207 Cdc16 "CDC16 cell division cycle 16" [Mus musculus (taxid:10090)]

 Score = 632 (227.5 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
 Identities = 132/287 (45%), Positives = 190/287 (66%)

Query:    62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
             +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct:   283 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 342

Query:   121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
             SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct:   343 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFGQALSIAPEDP 402

Query:   181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
             FVIHE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLNNLGH    K+K+ 
Sbjct:   403 FVIHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 461

Query:   241 GGEIIADKWEPLL--NN------LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY 292
                +   +   +L   N      +G+++  +  +E A+++   AL +      +   +G+
Sbjct:   462 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 521

Query:   293 -IQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPF 338
              I+   GD ++ +    K   LK  D    TM +  ++ +I  SPP+
Sbjct:   522 CIEMYIGDSEAYIGADIKDK-LKCYDFDVHTMKT--LKNII--SPPW 563

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

RGD|1305076 Cdc16 "cell division cycle 16" [Rattus norvegicus (taxid:10116)]

 Score = 632 (227.5 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
 Identities = 132/287 (45%), Positives = 190/287 (66%)

Query:    62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
             +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct:   283 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 342

Query:   121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
             SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct:   343 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFGQALSIAPEDP 402

Query:   181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
             FVIHE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLNNLGH    K+K+ 
Sbjct:   403 FVIHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 461

Query:   241 GGEIIADKWEPLL--NN------LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY 292
                +   +   +L   N      +G+++  +  +E A+++   AL +      +   +G+
Sbjct:   462 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 521

Query:   293 -IQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPF 338
              I+   GD ++ +    K   LK  D    TM +  ++ +I  SPP+
Sbjct:   522 CIEMYIGDSEAYIGADIKDK-LKCYDFDVHTMKT--LKNII--SPPW 563

GO:0005634 "nucleus" evidence=ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

UNIPROTKB|Q13042 CDC16 "Cell division cycle protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 630 (226.8 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 131/287 (45%), Positives = 190/287 (66%)

Query:    62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
             +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct:   283 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 342

Query:   121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
             SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct:   343 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 402

Query:   181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
             FV+HE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLNNLGH    K+K+ 
Sbjct:   403 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 461

Query:   241 GGEIIADKWEPLL--NN------LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY 292
                +   +   +L   N      +G+++  +  +E A+++   AL +      +   +G+
Sbjct:   462 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 521

Query:   293 -IQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPF 338
              I+   GD ++ +    K   LK  D    TM +  ++ +I  SPP+
Sbjct:   522 CIEMYIGDSEAYIGADIKDK-LKCYDFDVHTMKT--LKNII--SPPW 563

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0005819 "spindle" evidence=TAS

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q7Z651 CDC16 "CDC16 cell division cycle 16 homolog (S. cerevisiae), isoform CRA_h" [Homo sapiens (taxid:9606)]

 Score = 630 (226.8 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 131/287 (45%), Positives = 190/287 (66%)

Query:    62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
             +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct:   189 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 248

Query:   121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
             SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct:   249 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 308

Query:   181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
             FV+HE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLNNLGH    K+K+ 
Sbjct:   309 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 367

Query:   241 GGEIIADKWEPLL--NN------LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY 292
                +   +   +L   N      +G+++  +  +E A+++   AL +      +   +G+
Sbjct:   368 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 427

Query:   293 -IQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPF 338
              I+   GD ++ +    K   LK  D    TM +  ++ +I  SPP+
Sbjct:   428 CIEMYIGDSEAYIGADIKDK-LKCYDFDVHTMKT--LKNII--SPPW 469

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2R5H6 CDC16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 628 (226.1 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
 Identities = 131/287 (45%), Positives = 190/287 (66%)

Query:    62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
             +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct:   283 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWVAYGH 342

Query:   121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
             SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct:   343 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFGQALSIAPEDP 402

Query:   181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
             FV+HE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLNNLGH    K+K+ 
Sbjct:   403 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 461

Query:   241 GGEIIADKWEPLL--NN------LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY 292
                +   +   +L   N      +G+++  +  +E A+++   AL +      +   +G+
Sbjct:   462 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 521

Query:   293 -IQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPF 338
              I+   GD ++ +    K   LK  D    TM +  ++ +I  SPP+
Sbjct:   522 CIEMYIGDSEAYIGADIKDK-LKCYDFDVHTMKT--LKNII--SPPW 563

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|F1P4A5 CDC16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 629 (226.5 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 119/252 (47%), Positives = 177/252 (70%)

Query:    62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
             +LF L+H+LVDLYP++ ++W+AVGCYY ++G +++ ARR+L KAT+L++ + PAW+ YGH
Sbjct:   284 ELFYLSHKLVDLYPNNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLERTYGPAWIAYGH 343

Query:   121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
             SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct:   344 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 403

Query:   181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH------KAE 234
             FV+HE+GV+A+QN ++  AE  F++AL K+K +G EI  DKWEPLLNNLGH      K E
Sbjct:   404 FVMHEVGVVAFQNGDWKTAEKWFLDALEKIKAIGNEITVDKWEPLLNNLGHVCRKLKKYE 463

Query:   235 DKVK-QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY- 292
             + ++      ++  +     + +G+++  +  +E A+++   AL +      +   +G+ 
Sbjct:   464 EALEYHRQALVLIPQNASTYSAIGYIHSLMGNFESAIDYFHTALGLRRDDTFSVTMLGHC 523

Query:   293 IQALTGDLDSAV 304
             I+   GD ++ +
Sbjct:   524 IEMYIGDSEAYI 535

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|E1BPM5 CDC16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 629 (226.5 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 131/287 (45%), Positives = 190/287 (66%)

Query:    62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
             +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct:   283 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 342

Query:   121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
             SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct:   343 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFGQALSIAPEDP 402

Query:   181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
             FV+HE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLNNLGH    K+K+ 
Sbjct:   403 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 461

Query:   241 GGEIIADKWEPLL--NN------LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY 292
                +   +   +L   N      +G+++  +  +E A+++   AL +      +   +G+
Sbjct:   462 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 521

Query:   293 -IQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPF 338
              I+   GD ++ +    K   LK  D    TM +  ++ +I  SPP+
Sbjct:   522 CIEMYIGDSEAYIGADIKDK-LKCYDFDVHTMKT--LKNII--SPPW 563

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|I3L944 CDC16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 629 (226.5 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 131/287 (45%), Positives = 190/287 (66%)

Query:    62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
             +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct:   283 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 342

Query:   121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
             SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct:   343 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFGQALSIAPEDP 402

Query:   181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
             FV+HE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLNNLGH    K+K+ 
Sbjct:   403 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKY 461

Query:   241 GGEIIADKWEPLL--NN------LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY 292
                +   +   +L   N      +G+++  +  +E A+++   AL +      +   +G+
Sbjct:   462 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 521

Query:   293 -IQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPF 338
              I+   GD ++ +    K   LK  D    TM +  ++ +I  SPP+
Sbjct:   522 CIEMYIGDSEAYIGADIKDK-LKCYDFDVHTMKT--LKNII--SPPW 563

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

ZFIN|ZDB-GENE-051113-132 cdc16 "cell division cycle 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 612 (220.5 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
 Identities = 117/252 (46%), Positives = 171/252 (67%)

Query:    62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
             +LF L+H+LVDLYP + ++W+AVGCYY ++G +++ ARR+L KAT+L++ + PAW+ YGH
Sbjct:   284 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLERTYGPAWIAYGH 343

Query:   121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
             SFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN +LA  FF  ALSIA EDP
Sbjct:   344 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNPKLAEHFFSQALSIAPEDP 403

Query:   181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH-----KAED 235
             FVIHE+ V+A+QN +Y  +E  F++A+ K+K +G E+  DKWEPLLNNLGH     K  +
Sbjct:   404 FVIHEVAVVAFQNGDYKTSEKLFLDAMEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYE 463

Query:   236 KVKQLGGE--IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY- 292
             +  +   +  ++  +     + +G+V+     +E A+++   AL +      +   +G+ 
Sbjct:   464 QALEYHRQALVLIPQNASTYSAIGYVHSLKGDFESAIDYFHTALGLKRDDTFSVTMLGHC 523

Query:   293 IQALTGDLDSAV 304
             I+    D D+ +
Sbjct:   524 IEMYISDSDAYI 535

GO:0007049 "cell cycle" evidence=IMP

GO:0051301 "cell division" evidence=IEA

FB|FBgn0025781 Cdc16 "Cell division cycle 16 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 552 (199.4 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 113/223 (50%), Positives = 146/223 (65%)

Query:    63 LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
             LF +AH+LVD YPD AI+WYAVGCYY +IG+SDPARR+L KAT+LD+L+ PAWL YGHSF
Sbjct:   412 LFYVAHKLVDRYPDKAISWYAVGCYYDMIGKSDPARRYLSKATALDRLYGPAWLAYGHSF 471

Query:   123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
             A ENEH+QAMAAYF A  L +GCHLP LY+G+ECGLT N  LA KFF  A++IA  D +V
Sbjct:   472 ANENEHEQAMAAYFKATQLMRGCHLPLLYIGVECGLTKNLELAEKFFLQAMNIAPLDVYV 531

Query:   183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLGH------KA 233
             +HE+GVI Y+   +  A   F   +  VKQ      E I+ +WEPL  NLGH      K 
Sbjct:   532 LHELGVIKYEYEFFDGAATIFQCTVDIVKQRAKSNNEEISSRWEPLFINLGHSLRKVHKY 591

Query:   234 EDKVKQLGGEIIADKWEPLL-NNLGHVNRKLKKYEEALE-FHK 274
             E+ +      ++     P    ++G ++  L   + A+E FHK
Sbjct:   592 EEALYNFQYALLLKPQSPTTYTSIGFIHALLGNLDPAIEAFHK 634

GO:0005680 "anaphase-promoting complex" evidence=ISS;NAS

GO:0000090 "mitotic anaphase" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0007049 "cell cycle" evidence=IMP

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0045842 "positive regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0090302 "mitotic anaphase-promoting complex activity" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R349	CDC16_MOUSE	No assigned EC number	0.5428	0.7368	0.4064	yes	N/A
Q13042	CDC16_HUMAN	No assigned EC number	0.5392	0.7368	0.4064	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	342
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	8e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.001
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVA-------PMKASTFCCIGYIQALTGDLDSAV 304
            LNNL  V R+L  Y+EALE  ++AL +A       P  A     +  +    GD D A+
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 305 NYFHKTMALKRD 316
            Y  K +AL+  
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
            L NLG++  KL  Y+EALE++++AL + P  A  +  +       G  + A+  + K +
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 312 ALKRDDSFA 320
            L  D++ A
Sbjct: 62  ELDPDNAKA 70

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 12/102 (11%)

Query: 34  LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR 93
            LL  G +Y  L +   A + Y+ AL            +L PD+A A+Y +   YY +G+
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKAL------------ELDPDNADAYYNLAAAYYKLGK 49

Query: 94  SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
            + A     KA  LD     A+   G ++    ++++A+ AY
Sbjct: 50  YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 20/72 (27%), Positives = 32/72 (44%)

Query: 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV 304
           +         NL     KL KYEEALE +++AL + P  A  +  +G      G  + A+
Sbjct: 29  LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEAL 88

Query: 305 NYFHKTMALKRD 316
             + K + L  +
Sbjct: 89  EAYEKALELDPN 100

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 55/293 (18%), Positives = 107/293 (36%), Gaps = 23/293 (7%)

Query: 61  ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH 120
           A  F+ A +L  L    AIA    G +  L G+   A   L K+  LD     +++    
Sbjct: 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI-KRA 372

Query: 121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYV--GLECGLTNNARLASKFFDLALSIAHE 178
           S  +E          F+   L      P +Y        +      A K +  ++ +  +
Sbjct: 373 SMNLELGDPDKAEEDFDK-ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431

Query: 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSK------VKQLGGEIIAD--KWEPLLN--N 228
             F   ++GV  Y+  +   +   F            V    GE++ D  K++  +   +
Sbjct: 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491

Query: 229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 288
              + E + K +   ++     PL+N    + +  + + EA    ++AL++ P       
Sbjct: 492 TAIELEKETKPMYMNVL-----PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546

Query: 289 CIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV----IEQLIEESPP 337
            +  +    GD+D A+  F +   L R +      +SY      +  ++E  P
Sbjct: 547 TMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQEDYP 599

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 59/286 (20%), Positives = 101/286 (35%), Gaps = 46/286 (16%)

Query: 66  LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE 125
           + +E  D  PDS  AW  +G      G  + A     K  +L      A L+   ++AV 
Sbjct: 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648

Query: 126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH-------E 178
             + +A+ +   A  L             + GL     LA+K  + A  IA        +
Sbjct: 649 KNYAKAITSLKRALELKPD------NTEAQIGLAQLL-LAAKRTESAKKIAKSLQKQHPK 701

Query: 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSK------VKQLGGEIIADKWEP-----LLN 227
                   G +  +  +Y  A   + +AL +        +L   ++A          L  
Sbjct: 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEA 761

Query: 228 NLGHKAEDKVKQ--LGGEIIADKWE------------------PLLNNLGHVNRKLKKYE 267
            L     D V +  L    +A K                     +LNNL  +  +LK   
Sbjct: 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-P 820

Query: 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
            ALE+ ++AL +AP   +    +G++    G+ D A+    K + +
Sbjct: 821 RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAP 281
           L NLG+   KL  Y+EALE++++AL + P
Sbjct: 4   LYNLGNAYLKLGDYDEALEYYEKALELDP 32

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 33  ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG 92
           A L     V   L +   A +  + AL     +LA EL + +P++A A   +   Y  +G
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKAL-----ELARELGEDHPETARALNNLARLYLALG 60

Query: 93  RSDPARRFLGKATSLDK 109
             D A  +L KA +L +
Sbjct: 61  DYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAP 281
           L NLG+   KL KY+EALE++++AL + P
Sbjct: 4   LYNLGNAYLKLGKYDEALEYYEKALELNP 32

Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 67/309 (21%), Positives = 99/309 (32%), Gaps = 30/309 (9%)

Query: 24  SQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYA 83
           + L  E  + LL L+G  Y  L    LA   Y+ AL  D            P S  A   
Sbjct: 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID------------PRSLYAKLG 164

Query: 84  VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK 143
           +        R D AR  + +  + D   + A L+ G         + A+AAY  A  L  
Sbjct: 165 LAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP 224

Query: 144 GCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCF 203
                 L +            A K  D  L  A   P   +   ++ +Q  NY  A    
Sbjct: 225 NNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETL 284

Query: 204 MEALSK------VKQLGG--EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN 255
            +AL           L G  E      E             +K       A +       
Sbjct: 285 QDALKSAPEYLPALLLAGASEYQLGNLE----QAYQYLNQILKYAPNSHQARRL------ 334

Query: 256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315
           L  +  +L + +EA+     AL + P   +    +G      GD + A  Y  K   L  
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394

Query: 316 DDSFATTML 324
           +++ A T L
Sbjct: 395 ENAAARTQL 403

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG4626|consensus	966		100.0
KOG4626|consensus	966		100.0
KOG1126|consensus	638		100.0
KOG1173|consensus	611		100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.98
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.97
KOG1126|consensus	638		99.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.97
KOG1155|consensus	559		99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG0547|consensus	606		99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
KOG1155|consensus	559		99.95
KOG0547|consensus	606		99.95
PRK12370	553	invasion protein regulator; Provisional	99.94
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.94
PRK11189	296	lipoprotein NlpI; Provisional	99.94
KOG1129|consensus	478		99.93
KOG0624|consensus	504		99.93
KOG1125|consensus	579		99.93
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.93
KOG2002|consensus	1018		99.93
PRK12370	553	invasion protein regulator; Provisional	99.93
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.92
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.92
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.91
KOG2076|consensus	895		99.91
KOG2002|consensus	1018		99.91
PRK11189	296	lipoprotein NlpI; Provisional	99.91
KOG1173|consensus	611		99.91
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.91
KOG2003|consensus	840		99.91
PLN02789	320	farnesyltranstransferase	99.9
KOG0548|consensus	539		99.9
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.9
PLN02789	320	farnesyltranstransferase	99.89
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.88
PRK14574	822	hmsH outer membrane protein; Provisional	99.88
KOG1174|consensus	564		99.88
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.88
KOG1129|consensus	478		99.88
KOG0550|consensus	486		99.87
KOG1840|consensus	508		99.87
KOG0495|consensus	913		99.87
KOG1125|consensus	579		99.86
KOG2076|consensus	895		99.86
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.86
KOG0548|consensus	539		99.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.85
KOG0495|consensus	913		99.85
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.85
KOG0624|consensus	504		99.84
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.84
KOG4162|consensus	799		99.84
KOG1840|consensus	508		99.83
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.83
KOG2003|consensus	840		99.83
KOG1156|consensus	700		99.82
KOG1174|consensus	564		99.81
PRK15359	144	type III secretion system chaperone protein SscB;	99.8
PRK14574	822	hmsH outer membrane protein; Provisional	99.79
PRK15359	144	type III secretion system chaperone protein SscB;	99.79
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.79
KOG4162|consensus	799		99.78
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.78
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.77
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.77
PLN03218	1060	maturation of RBCL 1; Provisional	99.77
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.76
PLN03218	1060	maturation of RBCL 1; Provisional	99.76
KOG0550|consensus	486		99.75
KOG1127|consensus	1238		99.75
KOG1156|consensus	700		99.74
KOG1130|consensus	639		99.74
KOG3060|consensus	289		99.72
KOG1127|consensus	1238		99.72
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.72
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.72
KOG1128|consensus	777		99.72
KOG3060|consensus	289		99.72
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.71
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.71
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.71
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.71
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.7
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.69
PLN03077	857	Protein ECB2; Provisional	99.69
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.68
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.67
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.67
KOG0553|consensus	304		99.67
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.65
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.63
KOG2376|consensus	652		99.63
KOG1130|consensus	639		99.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.61
KOG0553|consensus	304		99.6
PLN03077	857	Protein ECB2; Provisional	99.6
KOG3785|consensus	557		99.59
KOG1128|consensus	777		99.56
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.56
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.52
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.51
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.51
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.48
KOG2376|consensus	652		99.47
KOG3785|consensus	557		99.47
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.47
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.44
KOG4340|consensus	459		99.43
KOG1915|consensus	677		99.42
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.42
PRK04841	903	transcriptional regulator MalT; Provisional	99.41
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.41
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.41
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.4
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.4
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.39
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.38
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.38
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.37
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.36
KOG1915|consensus	677		99.36
PRK11906	458	transcriptional regulator; Provisional	99.36
KOG4340|consensus	459		99.34
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.34
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.34
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.33
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.33
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.33
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.33
PRK15331	165	chaperone protein SicA; Provisional	99.32
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.32
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.32
PRK15331	165	chaperone protein SicA; Provisional	99.32
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.31
KOG4648|consensus	536		99.31
KOG1070|consensus	1710		99.31
KOG2047|consensus	835		99.3
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.3
PRK11906	458	transcriptional regulator; Provisional	99.3
KOG3081|consensus	299		99.29
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.28
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.27
KOG0543|consensus	397		99.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.23
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.23
PRK04841	903	transcriptional regulator MalT; Provisional	99.22
KOG1941|consensus	518		99.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.21
KOG1941|consensus	518		99.21
KOG0543|consensus	397		99.2
PRK10803	263	tol-pal system protein YbgF; Provisional	99.19
PRK10803	263	tol-pal system protein YbgF; Provisional	99.17
KOG2053|consensus	932		99.17
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.16
PF12688	120	TPR_5: Tetratrico peptide repeat	99.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.12
KOG4234|consensus	271		99.11
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.1
KOG3081|consensus	299		99.1
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.07
PF13371	73	TPR_9: Tetratricopeptide repeat	99.07
PF12688	120	TPR_5: Tetratrico peptide repeat	99.06
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.06
COG4700	251	Uncharacterized protein conserved in bacteria cont	99.0
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.98
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.97
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.97
PF13512	142	TPR_18: Tetratricopeptide repeat	98.96
KOG2047|consensus	835		98.96
KOG3617|consensus	1416		98.94
KOG4648|consensus	536		98.93
PF13371	73	TPR_9: Tetratricopeptide repeat	98.93
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.93
PF13512	142	TPR_18: Tetratricopeptide repeat	98.92
KOG1070|consensus	1710		98.88
KOG2471|consensus	696		98.87
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.87
KOG4234|consensus	271		98.87
KOG2796|consensus	366		98.86
KOG1586|consensus	288		98.84
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.81
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.81
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.81
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.79
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.77
KOG4555|consensus	175		98.72
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.7
KOG4555|consensus	175		98.69
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.67
KOG2610|consensus	491		98.66
KOG1585|consensus	308		98.65
KOG4507|consensus	886		98.64
KOG2471|consensus	696		98.63
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.62
KOG2610|consensus	491		98.61
KOG2796|consensus	366		98.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.58
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.57
PF13428	44	TPR_14: Tetratricopeptide repeat	98.57
KOG3617|consensus	1416		98.56
PF13428	44	TPR_14: Tetratricopeptide repeat	98.52
KOG1914|consensus	656		98.5
KOG2053|consensus	932		98.5
KOG4642|consensus	284		98.5
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.5
KOG4642|consensus	284		98.5
KOG1586|consensus	288		98.5
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.43
KOG0545|consensus	329		98.42
KOG0530|consensus	318		98.42
KOG1585|consensus	308		98.41
KOG0985|consensus	1666		98.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.39
PF13431	34	TPR_17: Tetratricopeptide repeat	98.35
KOG3616|consensus	1636		98.32
PF13431	34	TPR_17: Tetratricopeptide repeat	98.31
KOG2300|consensus	629		98.3
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.29
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.28
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.25
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.24
KOG0551|consensus	390		98.24
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.23
KOG0376|consensus	476		98.23
KOG0376|consensus	476		98.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.2
KOG0551|consensus	390		98.19
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.18
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.16
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.13
KOG0545|consensus	329		98.13
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.04
KOG4507|consensus	886		98.03
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.03
KOG1914|consensus	656		97.96
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.93
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.9
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.89
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.88
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.85
KOG1550|consensus	552		97.85
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.84
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.84
KOG0530|consensus	318		97.84
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.84
KOG1308|consensus	377		97.76
KOG0985|consensus	1666		97.75
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.74
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.74
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.72
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.7
KOG1308|consensus	377		97.66
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.64
KOG1258|consensus	577		97.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.59
KOG1258|consensus	577		97.58
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.58
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.56
KOG1464|consensus	440		97.56
KOG3616|consensus	1636		97.5
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.49
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.48
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.48
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.47
KOG1550|consensus	552		97.45
PRK10941	269	hypothetical protein; Provisional	97.44
KOG0890|consensus	2382		97.37
KOG3364|consensus	149		97.36
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.34
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.33
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.33
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.31
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.29
KOG2300|consensus	629		97.27
KOG2041|consensus	1189		97.26
KOG3824|consensus	472		97.21
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.2
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.18
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.15
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.15
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.11
KOG3824|consensus	472		97.09
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.07
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.02
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.0
KOG2396|consensus	568		96.96
KOG3783|consensus	546		96.93
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.92
KOG2041|consensus	1189		96.91
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.91
PRK10941	269	hypothetical protein; Provisional	96.9
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.89
KOG2396|consensus	568		96.88
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.83
KOG0890|consensus	2382		96.83
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.82
KOG4814|consensus	872		96.81
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.78
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.76
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.73
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.72
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.56
KOG1839|consensus	1236		96.54
KOG3364|consensus	149		96.51
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.49
KOG2422|consensus	665		96.47
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.37
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.33
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.29
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.27
KOG3783|consensus	546		96.26
KOG1839|consensus	1236		96.25
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.24
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.22
KOG1538|consensus	1081		96.19
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.06
KOG2422|consensus	665		96.01
KOG1310|consensus	758		96.0
KOG1310|consensus	758		95.94
KOG4814|consensus	872		95.92
KOG1464|consensus	440		95.91
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.84
COG2912	269	Uncharacterized conserved protein [Function unknow	95.67
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.61
KOG3807|consensus	556		95.53
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.36
KOG0529|consensus	421		95.32
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.31
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.24
KOG0529|consensus	421		95.04
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.94
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.7
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.64
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.58
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.51
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.5
COG2912	269	Uncharacterized conserved protein [Function unknow	94.49
KOG2581|consensus	493		94.48
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.47
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.28
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.23
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.03
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.99
KOG2114|consensus	933		93.9
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.88
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.63
COG4455	273	ImpE Protein of avirulence locus involved in tempe	93.6
KOG3807|consensus	556		93.45
COG5159	421	RPN6 26S proteasome regulatory complex component [	93.43
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.36
PRK11619	644	lytic murein transglycosylase; Provisional	92.98
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.93
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.92
COG4941	415	Predicted RNA polymerase sigma factor containing a	92.88
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.73
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.72
KOG0546|consensus	372		92.49
KOG1538|consensus	1081		92.04
COG3947	361	Response regulator containing CheY-like receiver a	91.99
COG3947	361	Response regulator containing CheY-like receiver a	91.99
KOG1463|consensus	411		91.7
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.4
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.23
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.22
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	91.18
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	91.03
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.87
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.75
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.39
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	90.25
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	90.24
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.01
smart00299	140	CLH Clathrin heavy chain repeat homology.	89.85
PF12854	34	PPR_1: PPR repeat	89.77
PF13041	50	PPR_2: PPR repeat family	89.66
PF12854	34	PPR_1: PPR repeat	89.6
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.58
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.33
COG5159	421	RPN6 26S proteasome regulatory complex component [	89.2
PF13041	50	PPR_2: PPR repeat family	88.82
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	88.72
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	88.49
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	88.36
KOG2063|consensus	877		88.23
KOG0546|consensus	372		87.38
COG4941	415	Predicted RNA polymerase sigma factor containing a	86.78
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	86.77
KOG2581|consensus	493		86.37
KOG1463|consensus	411		86.17
KOG4014|consensus	248		85.99
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	85.29
COG5187	412	RPN7 26S proteasome regulatory complex component,	85.13
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.07
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	84.19
KOG4279|consensus	1226		83.88
KOG4151|consensus	748		83.85
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	82.76
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.55
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	82.36
KOG0276|consensus	794		81.45
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	81.33
KOG4279|consensus	1226		80.83
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	80.24

>KOG4626|consensus

Probab=100.00  E-value=8.6e-37  Score=253.00  Aligned_cols=290  Identities=18%  Similarity=0.158  Sum_probs=259.7

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHH----------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q psy3701          35 LLLKGRVYEALENRALAADCYKGALL----------------------ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG   92 (342)
Q Consensus        35 ~~~~g~~~~~~~~~~~A~~~~~~~~~----------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~   92 (342)
                      ...+|...-..|+.++|..+|.+++.                      ..++..|+++++.+|+.+++|+++|.+|...+
T Consensus       187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~  266 (966)
T KOG4626|consen  187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR  266 (966)
T ss_pred             hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence            33578888888888888888888772                      56778888889999999999999999999999


Q ss_pred             ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHH
Q psy3701          93 RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLA  172 (342)
Q Consensus        93 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  172 (342)
                      .+++|+.+|.+|+.+.|++..++.++|.+|..+|..+-|+..|++++++.|..+.++.++|..+...|+..+|..+|.++
T Consensus       267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka  346 (966)
T KOG4626|consen  267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA  346 (966)
T ss_pred             cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh------hHHHHHHHhch-hcc
Q psy3701         173 LSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH------KAEDKVKQLGG-EII  245 (342)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~  245 (342)
                      +.+.|..+++.+++|.++.++|.+++|...|.++++..|...         ...++++.      .+.+++..+.. ..+
T Consensus       347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a---------aa~nNLa~i~kqqgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA---------AAHNNLASIYKQQGNLDDAIMCYKEALRI  417 (966)
T ss_pred             HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh---------hhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999874         33344443      23355555554 678


Q ss_pred             CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                      .|..++++.++|+.|..+|+.+.|+..|.+++..+|...+++.++|.+|...|+..+|+..|+.++.+.||.++++.++.
T Consensus       418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll  497 (966)
T KOG4626|consen  418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL  497 (966)
T ss_pred             CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhhh
Q psy3701         326 YVIEQLIE  333 (342)
Q Consensus       326 ~~~~~~~~  333 (342)
                      .+++-..+
T Consensus       498 h~lq~vcd  505 (966)
T KOG4626|consen  498 HCLQIVCD  505 (966)
T ss_pred             HHHHHHhc
Confidence            88765543

>KOG4626|consensus

Probab=100.00  E-value=2.9e-37  Score=255.79  Aligned_cols=262  Identities=19%  Similarity=0.256  Sum_probs=239.8

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhc
Q psy3701          61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN  140 (342)
Q Consensus        61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  140 (342)
                      .+|...|.+++..+|..+.+|.++|.++...|+...|+..|++|+.++|...++|++||.+|...+.+++|+.+|.+++.
T Consensus       201 ~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~  280 (966)
T KOG4626|consen  201 EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN  280 (966)
T ss_pred             chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence            67788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         141 LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       141 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      +.|.+..++-++|.+|..+|..+-|+..|+++++..|..++++.++|..+-..|+..+|+.+|.+++.+.|...      
T Consensus       281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha------  354 (966)
T KOG4626|consen  281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA------  354 (966)
T ss_pred             cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999985      


Q ss_pred             chhhHHHHhhhhHH------HHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701         221 KWEPLLNNLGHKAE------DKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI  293 (342)
Q Consensus       221 ~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  293 (342)
                         .++++++....      .+...+.. ....|..+.++.++|.+|.++|++++|+.+|++++++.|...+++.++|..
T Consensus       355 ---dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt  431 (966)
T KOG4626|consen  355 ---DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT  431 (966)
T ss_pred             ---HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence               67777776544      33333333 567788889999999999999999999999999999999999999999999


Q ss_pred             HHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         294 QALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       294 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      |..+|+...|+.+|.+++.++|...+++.+|+.+++..
T Consensus       432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs  469 (966)
T KOG4626|consen  432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS  469 (966)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence            99999999999999999999999999999998776543

>KOG1126|consensus

Probab=100.00  E-value=2.2e-32  Score=228.95  Aligned_cols=251  Identities=22%  Similarity=0.240  Sum_probs=240.5

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHH----------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGALL----------------------ADLFKLAHELVDLYPDSAIAWYAVGCYYYL   90 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~----------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~   90 (342)
                      .++..+|+.|+.+++|++|..+|+....                      -+.-.+++.++..+|+.|++|..+|.||..
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence            5666799999999999999999998762                      355678889999999999999999999999


Q ss_pred             hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701          91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD  170 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  170 (342)
                      +++++.|+++|++|++++|.+..+|..+|.-+....++|.|..+|++++..+|.+..+|+.+|.+|.++++++.|+-.|+
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701         171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE  250 (342)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
                      +|++++|.+..+...+|.++.+.|+.++|+.++++|+.++|.++                                    
T Consensus       514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~------------------------------------  557 (638)
T KOG1126|consen  514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP------------------------------------  557 (638)
T ss_pred             hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc------------------------------------
Confidence            99999999999999999999999999999999999999999994                                    


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      ...+..|.++..++++++|+..+++.-++.|+...+++.+|.+|.++|+.+.|+..|.-|.+++|.-..
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            788999999999999999999999999999999999999999999999999999999999999997665

>KOG1173|consensus

Probab=100.00  E-value=4.7e-30  Score=210.99  Aligned_cols=270  Identities=50%  Similarity=0.806  Sum_probs=249.2

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYL   90 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~   90 (342)
                      .+...+++.++..++|.+..++....+                      ..+.+.+.+++++..|+.+..|+..|..|..
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~  324 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM  324 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence            444557788888888888888777655                      2677888899999999999999999999999


Q ss_pred             hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701          91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD  170 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  170 (342)
                      .|++++|+++|.|+..++|....+|...|.++...|+.++|+.+|..|-++.|+.....+.+|.-|.+++++.-|.+.|.
T Consensus       325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~  404 (611)
T KOG1173|consen  325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK  404 (611)
T ss_pred             hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701         171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE  250 (342)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
                      +++.+.|.+|.+...+|.+.+..+.|.+|..+|+.++..-+...                             ...+.|.
T Consensus       405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-----------------------------~e~~~w~  455 (611)
T KOG1173|consen  405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL-----------------------------NEKIFWE  455 (611)
T ss_pred             HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-----------------------------ccccchh
Confidence            99999999999999999999999999999999999996655542                             1122457


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ..+.++|.++.+++++++|+..+++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.+.|++..+...|+.+++.
T Consensus       456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             h
Q psy3701         331 L  331 (342)
Q Consensus       331 ~  331 (342)
                      .
T Consensus       536 ~  536 (611)
T KOG1173|consen  536 S  536 (611)
T ss_pred             h
Confidence            3

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.98  E-value=2.6e-29  Score=226.34  Aligned_cols=283  Identities=12%  Similarity=0.084  Sum_probs=165.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      +..+..+|..++..|+|++|+..|+++            +...|+ +..+.++|.+|..+|++++|+..++++++++|++
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~a------------l~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~  193 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKA------------IECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY  193 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC
Confidence            455677999999999999999999996            466774 6677888888888888888888888888888888


Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCC------------------------------CCchHHHHHHH-------
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK------------------------------GCHLPALYVGL-------  154 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------------------~~~~~~~~l~~-------  154 (342)
                      ..++..+|.++..+|++++|+..+..+...++                              .+...+..++.       
T Consensus       194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  273 (615)
T TIGR00990       194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRP  273 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC
Confidence            88888888888888888777765544332211                              11101111111       


Q ss_pred             --------------------------HH---hhhCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHhcChhHHHHH
Q psy3701         155 --------------------------EC---GLTNNARLASKFFDLALSI---AHEDPFVIHEMGVIAYQNHNYTVAENC  202 (342)
Q Consensus       155 --------------------------~~---~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~  202 (342)
                                                ..   ...+++++|++.|++++..   .|....++..+|.++..+|++++|+..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~  353 (615)
T TIGR00990       274 KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD  353 (615)
T ss_pred             CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                      00   0113455555555555543   244445555555555555555555555


Q ss_pred             HHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Q psy3701         203 FMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP  281 (342)
Q Consensus       203 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  281 (342)
                      ++++++++|.......  ....++...++ ..++...+.. ....|..+.+++.+|.++...|++++|+..|+++++++|
T Consensus       354 ~~kal~l~P~~~~~~~--~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P  430 (615)
T TIGR00990       354 LSKSIELDPRVTQSYI--KRASMNLELGD-PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP  430 (615)
T ss_pred             HHHHHHcCCCcHHHHH--HHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence            5555555554420000  00011111111 1222222222 223444455666666666666666666666666666666


Q ss_pred             CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ++...+..+|.++..+|++++|+..|++++...|+++.++..++.++..
T Consensus       431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~  479 (615)
T TIGR00990       431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD  479 (615)
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666555555543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.97  E-value=4.4e-29  Score=224.81  Aligned_cols=247  Identities=17%  Similarity=0.155  Sum_probs=213.5

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ....+..+|.++...|++++|+..|+++            +..+|....+|..+|.++...|++++|+..|+++++.+|+
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~ka------------l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  397 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKS------------IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE  397 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            4456777888888889999999888886            5889999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                      ++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..+++++...|+++.++..+|.++
T Consensus       398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~  477 (615)
T TIGR00990       398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL  477 (615)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH-HHHHHhhhHHHH
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG-HVNRKLKKYEEA  269 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A  269 (342)
                      ...|++++|+..|++++.+.|....                             .... ...+...+ ..+...|++++|
T Consensus       478 ~~~g~~~~A~~~~~~Al~l~p~~~~-----------------------------~~~~-~~~l~~~a~~~~~~~~~~~eA  527 (615)
T TIGR00990       478 LDQNKFDEAIEKFDTAIELEKETKP-----------------------------MYMN-VLPLINKALALFQWKQDFIEA  527 (615)
T ss_pred             HHccCHHHHHHHHHHHHhcCCcccc-----------------------------cccc-HHHHHHHHHHHHHHhhhHHHH
Confidence            9999999999999999998886520                             0000 11222333 334457999999


Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         270 LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       270 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      +..++++++++|++..++..+|.++...|++++|+.+|++++++.+....
T Consensus       528 ~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999999999999999999999999999886554

>KOG1126|consensus

Probab=99.97  E-value=6e-30  Score=214.41  Aligned_cols=255  Identities=20%  Similarity=0.229  Sum_probs=231.3

Q ss_pred             HHHHHHHhHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--
Q psy3701          32 SALLLLKGRVYEAL--ENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--  107 (342)
Q Consensus        32 ~~~~~~~g~~~~~~--~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--  107 (342)
                      ..++..+|..+...  -+..+|+..|.+            +-...++...++..+|..|+++++|++|..+|+.+-+.  
T Consensus       317 ~~llr~~~~~~~~~s~y~~~~A~~~~~k------------lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p  384 (638)
T KOG1126|consen  317 MELLRGLGEGYRSLSQYNCREALNLFEK------------LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP  384 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34444555555543  334566666666            35677888899999999999999999999999987433  


Q ss_pred             --------------------------------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701         108 --------------------------------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE  155 (342)
Q Consensus       108 --------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  155 (342)
                                                      +|+.|+.|..+|++|..+++++.|+++|+++++++|....++..+|.-
T Consensus       385 ~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE  464 (638)
T KOG1126|consen  385 YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE  464 (638)
T ss_pred             ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence                                            567788899999999999999999999999999999999999999999


Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701         156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED  235 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                      +.....++.|..+|+.++..+|++..+|+.+|.+|.++++++.|.-.|++|++++|.+                      
T Consensus       465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n----------------------  522 (638)
T KOG1126|consen  465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN----------------------  522 (638)
T ss_pred             hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc----------------------
Confidence            9999999999999999999999999999999999999999999999999999999999                      


Q ss_pred             HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                                    ......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++..++++++|...+++.-++.|
T Consensus       523 --------------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP  588 (638)
T KOG1126|consen  523 --------------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP  588 (638)
T ss_pred             --------------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence                          478889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHhHHHHHHHHhhhc
Q psy3701         316 DDSFATTMLSYVIEQLIEE  334 (342)
Q Consensus       316 ~~~~~~~~l~~~~~~~~~~  334 (342)
                      ++..++..+++++.+++..
T Consensus       589 ~es~v~~llgki~k~~~~~  607 (638)
T KOG1126|consen  589 QESSVFALLGKIYKRLGNT  607 (638)
T ss_pred             chHHHHHHHHHHHHHHccc
Confidence            9999999999999988653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.97  E-value=7.8e-28  Score=216.27  Aligned_cols=308  Identities=12%  Similarity=0.005  Sum_probs=176.0

Q ss_pred             hhhhhhcccchhhhhhhhh-hhhHHH-----HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q psy3701           7 SLQELLGGEGVSFFCWFSQ-LQSEMK-----SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIA   80 (342)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~   80 (342)
                      +..+++..+.....|.|.+ .++...     ..-...........|++.+|...++..            +...|+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~------------l~~~p~~~~~   78 (656)
T PRK15174         11 SPTTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDR------------VLTAKNGRDL   78 (656)
T ss_pred             CchhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHH------------HHhCCCchhH
Confidence            4466777777777887652 222111     112223445566667777777777764            5667777777


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN  160 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  160 (342)
                      ++.+|.+....|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..++.++...|
T Consensus        79 l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g  158 (656)
T PRK15174         79 LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMD  158 (656)
T ss_pred             HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            77777777777777777777777777777777777777777777777777777777777777776666667777777777


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701         161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL  240 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (342)
                      ++++|+..+++++...|+++..+..++ .+...|++++|+..++++++..|...... .......+...++..+ +...+
T Consensus       159 ~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~-~~~l~~~l~~~g~~~e-A~~~~  235 (656)
T PRK15174        159 KELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES-AGLAVDTLCAVGKYQE-AIQTG  235 (656)
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH-HHHHHHHHHHCCCHHH-HHHHH
Confidence            777777777766666666666555443 35566666666666666665544221000 0000011112222221 22222


Q ss_pred             ch-hccCCCChHHHHHHHHHHHHhhhHHH----HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         241 GG-EIIADKWEPLLNNLGHVNRKLKKYEE----ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       241 ~~-~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                      .. ....|....++..+|.++...|++++    |+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|
T Consensus       236 ~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P  315 (656)
T PRK15174        236 ESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP  315 (656)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            22 22334444555555555555555553    45555555555555555555555555555555555555555555555


Q ss_pred             CchhHHhHHHHHHH
Q psy3701         316 DDSFATTMLSYVIE  329 (342)
Q Consensus       316 ~~~~~~~~l~~~~~  329 (342)
                      +++.++..++.++.
T Consensus       316 ~~~~a~~~La~~l~  329 (656)
T PRK15174        316 DLPYVRAMYARALR  329 (656)
T ss_pred             CCHHHHHHHHHHHH
Confidence            55555555554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.97  E-value=9.4e-28  Score=215.74  Aligned_cols=285  Identities=9%  Similarity=-0.118  Sum_probs=202.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ....++.+|.+....|++++|+..|++.            +..+|+++.++..+|.++...|++++|+..+++++.++|+
T Consensus        75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~------------l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~  142 (656)
T PRK15174         75 GRDLLRRWVISPLASSQPDAVLQVVNKL------------LAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG  142 (656)
T ss_pred             chhHHHHHhhhHhhcCCHHHHHHHHHHH------------HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3556778888888999999999999995            5888888888888888888888888888888888888888


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE-DPFVIHEMGVI  189 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~  189 (342)
                      ++.++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..+++++...|. +......++.+
T Consensus       143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~  221 (656)
T PRK15174        143 NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT  221 (656)
T ss_pred             cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence            8888888888888888888888888888888887776665543 366677777777777777766542 33334455666


Q ss_pred             HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH---HHHHHhch-hccCCCChHHHHHHHHHHHHhhh
Q psy3701         190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE---DKVKQLGG-EIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      +...|++++|+..+++++...|+++..  ......++...|+..+   .+...+.. ....|....++..+|.++...|+
T Consensus       222 l~~~g~~~eA~~~~~~al~~~p~~~~~--~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  299 (656)
T PRK15174        222 LCAVGKYQEAIQTGESALARGLDGAAL--RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ  299 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence            777777777777777777776665300  0011122222333322   23333333 33455666777777777777777


Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      +++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++......++.++..
T Consensus       300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~  364 (656)
T PRK15174        300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ  364 (656)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777766555545544433

>KOG1155|consensus

Probab=99.96  E-value=8.7e-27  Score=187.57  Aligned_cols=260  Identities=15%  Similarity=0.166  Sum_probs=234.8

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHH----------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh
Q psy3701          37 LKGRVYEALENRALAADCYKGALL----------------------ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS   94 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~~----------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~   94 (342)
                      ..|.+.....++++|+..|+....                      .+...+++.+...+.-.+++...+|..|...++.
T Consensus       267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH  346 (559)
T KOG1155|consen  267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH  346 (559)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence            466777888889999888887651                      3445566666677777778888889999999999


Q ss_pred             HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701          95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus        95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      ++|+.+|++|++++|....+|..+|+-|..+.+...|+..|++|++++|.+..+|+.+|..|..++...-|+-+|++++.
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN  254 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (342)
                      ..|.++..|..+|.||.+.++.++|+++|.+++......                                    ..++.
T Consensus       427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte------------------------------------~~~l~  470 (559)
T KOG1155|consen  427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE------------------------------------GSALV  470 (559)
T ss_pred             cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc------------------------------------hHHHH
Confidence            999999999999999999999999999999999988776                                    47999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHh-------hCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQALV-------VAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      .+|.+|.++++.++|..+|++.++       ..|....+...|+.-+.+.+++++|..+..+++.-++.-.++...+..+
T Consensus       471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei  550 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI  550 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            999999999999999999999998       3455667777899999999999999999999999988888888888888


Q ss_pred             HHHhh
Q psy3701         328 IEQLI  332 (342)
Q Consensus       328 ~~~~~  332 (342)
                      .....
T Consensus       551 r~~~~  555 (559)
T KOG1155|consen  551 RKIQA  555 (559)
T ss_pred             HHhcC
Confidence            76654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=1.8e-26  Score=220.69  Aligned_cols=267  Identities=14%  Similarity=0.037  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHHhcCCCcHH--------------HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc
Q psy3701          61 ADLFKLAHELVDLYPDSAI--------------AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN  126 (342)
Q Consensus        61 ~~a~~~~~~~~~~~p~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  126 (342)
                      ++|+..++++++.+|++..              ....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus       320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g  399 (1157)
T PRK11447        320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK  399 (1157)
T ss_pred             HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            4444455555677776532              12345778888899999999999999999988888888999999999


Q ss_pred             cHHHHHHHHHHHhccCCCCchHHHHHH------------------------------------------HHHhhhCCHHH
Q psy3701         127 EHDQAMAAYFNAFNLFKGCHLPALYVG------------------------------------------LECGLTNNARL  164 (342)
Q Consensus       127 ~~~~A~~~~~~al~~~~~~~~~~~~l~------------------------------------------~~~~~~~~~~~  164 (342)
                      ++++|++.|+++++.+|.+..++..++                                          ..+...|++++
T Consensus       400 ~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e  479 (1157)
T PRK11447        400 DYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ  479 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence            999999999999988888776654443                                          33446789999


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh--------hHHHHhhh-----
Q psy3701         165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE--------PLLNNLGH-----  231 (342)
Q Consensus       165 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------~~~~~~~~-----  231 (342)
                      |+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|.++.........        .+...+..     
T Consensus       480 A~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~  559 (1157)
T PRK11447        480 AAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ  559 (1157)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence            99999999999999999999999999999999999999999999888775222111000        00000000     


Q ss_pred             ----------------------------hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Q psy3701         232 ----------------------------KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK  283 (342)
Q Consensus       232 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  283 (342)
                                                  ..+++...+.   ..|..+..+..+|.++...|++++|+..|+++++.+|++
T Consensus       560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~  636 (1157)
T PRK11447        560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN  636 (1157)
T ss_pred             cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                                        0011112221   355666788999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         284 ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       284 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      +.++..++.++...|++++|+..++++++..|+++.++..++.++..
T Consensus       637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~  683 (1157)
T PRK11447        637 ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA  683 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999988888877654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=4.2e-26  Score=216.09  Aligned_cols=295  Identities=20%  Similarity=0.205  Sum_probs=190.1

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYL   90 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~   90 (342)
                      .++..++.++...|++++|+..+.++.                      +++|...+++++...|.++.+|..+|.++..
T Consensus       534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  613 (899)
T TIGR02917       534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA  613 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            344556666666777777776666552                      3566677777777777777788888888888


Q ss_pred             hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701          91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD  170 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  170 (342)
                      .|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++..|++..++..++.++...|++++|+..++
T Consensus       614 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  693 (899)
T TIGR02917       614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK  693 (899)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888888888887787777788888888888888888888888888877777777777777777777777777777


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH----------------
Q psy3701         171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE----------------  234 (342)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  234 (342)
                      .+....|.++..+..+|.++...|++++|+..|++++...|++.   ........+...|+..+                
T Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~  770 (899)
T TIGR02917       694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ---NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDA  770 (899)
T ss_pred             HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            77777777777777788888888888888888888877776552   00011111111221111                


Q ss_pred             -----------------HHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701         235 -----------------DKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL  296 (342)
Q Consensus       235 -----------------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  296 (342)
                                       ++...+.. ....|..+.++..+|.++...|+ .+|+..+++++...|+++..+..+|.++..
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  849 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE  849 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence                             12222222 12233344444555555555555 445555555555555555555555666666


Q ss_pred             hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         297 TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       297 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      .|++++|+.+|+++++.+|.++.++..++.++...
T Consensus       850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  884 (899)
T TIGR02917       850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT  884 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence            66666666666666666666666666666655544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=3.1e-26  Score=216.96  Aligned_cols=276  Identities=16%  Similarity=0.143  Sum_probs=216.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYY   89 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~   89 (342)
                      ...+..+|.++...|++++|+..|++++                      +++|...+++++..+|++..++..++.++.
T Consensus       601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  680 (899)
T TIGR02917       601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL  680 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3456667777777777777777776653                      255666666666666666666666666666


Q ss_pred             HhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701          90 LIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF  169 (342)
Q Consensus        90 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  169 (342)
                      ..|++++|+..++++....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|++.+
T Consensus       681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~  759 (899)
T TIGR02917       681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTL  759 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHH
Confidence            66666666666666666666677777788888888888888888888888888876 66777888888899999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCC
Q psy3701         170 DLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADK  248 (342)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  248 (342)
                      +++++..|+++.++..+|.++...|++++|+..|+++++..|+++......  ...+...++  .+++..+.. ....|.
T Consensus       760 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~~~--~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL--AWLYLELKD--PRALEYAEKALKLAPN  835 (899)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHhcCc--HHHHHHHHHHHhhCCC
Confidence            999999999999999999999999999999999999999988774211111  122233333  334555444 345666


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      .+..+..+|.++...|++++|+.+++++++.+|.++.++..++.++...|++++|+..++++++
T Consensus       836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence            7788999999999999999999999999999999999999999999999999999999999863

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=5.8e-26  Score=217.16  Aligned_cols=280  Identities=15%  Similarity=0.050  Sum_probs=218.2

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH--
Q psy3701          37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA--  114 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--  114 (342)
                      .+|..+...|++++|+..|+++            +..+|+++.++..+|.++...|++++|+.+|+++++.+|++...  
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~a------------L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~  341 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQA------------VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK  341 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence            3477788888888888888885            58899999999999999999999999999999999999986431  


Q ss_pred             ------------HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHH
Q psy3701         115 ------------WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV  182 (342)
Q Consensus       115 ------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  182 (342)
                                  ...+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|++.|+++++.+|++..+
T Consensus       342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a  421 (1157)
T PRK11447        342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA  421 (1157)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence                        23458889999999999999999999999999999999999999999999999999999999998877


Q ss_pred             HHHHHHH------------------------------------------HHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         183 IHEMGVI------------------------------------------AYQNHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       183 ~~~l~~~------------------------------------------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      +..++.+                                          +...|++++|+..|+++++.+|+++.  ...
T Consensus       422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~--~~~  499 (1157)
T PRK11447        422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW--LTY  499 (1157)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHH
Confidence            6655544                                          44568888888888888888887741  011


Q ss_pred             chhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH-----------------------
Q psy3701         221 KWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA-----------------------  276 (342)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-----------------------  276 (342)
                      ....++...++ .+++...++. ....|..+..++.++..+...|++++|+..++++                       
T Consensus       500 ~LA~~~~~~G~-~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~  578 (1157)
T PRK11447        500 RLAQDLRQAGQ-RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE  578 (1157)
T ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence            11122222332 2233333333 3345556666666666666666666665554432                       


Q ss_pred             -----------------HhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         277 -----------------LVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       277 -----------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                                       ++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...
T Consensus       579 ~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~  650 (1157)
T PRK11447        579 TANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ  650 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence                             2246777778889999999999999999999999999999999999999887554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.96  E-value=3e-25  Score=190.47  Aligned_cols=281  Identities=15%  Similarity=0.072  Sum_probs=209.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      ....+.+|..+...|++++|+..|+++            +..+|+++.++..+|.++...|++++|+..+++++...+..
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~a------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  102 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEM------------LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT  102 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHH------------HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC
Confidence            344556788888888888888888885            47788888888888888888888888888888887753322


Q ss_pred             ----HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChH-----H
Q psy3701         112 ----LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF-----V  182 (342)
Q Consensus       112 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~  182 (342)
                          ..++..+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+..     .
T Consensus       103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  182 (389)
T PRK11788        103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF  182 (389)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence                2457788888888888888888888888888877778888888888888888888888888887766532     4


Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhc-cCCC-ChHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI-IADK-WEPLLNNLGHVN  260 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~~  260 (342)
                      +..+|.++...|++++|+..++++++..|.....  .......+...++ ..++...+.... ..+. ...++..++.++
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~  259 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRA--SILLGDLALAQGD-YAAAIEALERVEEQDPEYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH--HHHHHHHHHHCCC-HHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence            5677888888888888888888888877765210  0011112222222 223333333322 1222 245678899999


Q ss_pred             HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       261 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      ...|++++|+..++++++..|+... ...++.++.+.|++++|+..++++++..|++......+...+
T Consensus       260 ~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~  326 (389)
T PRK11788        260 QALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL  326 (389)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence            9999999999999999999997754 488999999999999999999999999999887665554433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=1.3e-25  Score=206.61  Aligned_cols=248  Identities=15%  Similarity=0.049  Sum_probs=214.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ...+++.+|.++.. ++..+|+..|.++            +...|++. ....+|..+...|++++|+..|++++...|.
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~A------------l~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~  541 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQA------------EQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS  541 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHH------------HHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence            56788889999987 8888999988886            46677654 3666677778999999999999998777665


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                      + ..+..+|.++...|++++|+.+++++++..|........++......|++++|+..++++++.+|+ +..+..+|.++
T Consensus       542 ~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l  619 (987)
T PRK09782        542 N-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY  619 (987)
T ss_pred             c-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence            4 557888999999999999999999999999887766666666666779999999999999999996 88999999999


Q ss_pred             HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHH
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL  270 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  270 (342)
                      .+.|++++|+..|++++..+|++                                    +.++.++|.++...|++++|+
T Consensus       620 ~~lG~~deA~~~l~~AL~l~Pd~------------------------------------~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        620 RQRHNVPAAVSDLRAALELEPNN------------------------------------SNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999998                                    588999999999999999999


Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         271 EFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       271 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ..|+++++.+|+++.++.++|.++...|++++|+.+|+++++++|++..+....+.+...
T Consensus       664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~  723 (987)
T PRK09782        664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ  723 (987)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence            999999999999999999999999999999999999999999999988777766665543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=3.4e-25  Score=203.88  Aligned_cols=256  Identities=10%  Similarity=-0.004  Sum_probs=231.0

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLP  113 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  113 (342)
                      ....+|..+...|++++|+..|+++            ....|. ...++.+|.++...|++++|+.+++++++.+|.+..
T Consensus       511 ~~L~lA~al~~~Gr~eeAi~~~rka------------~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~  577 (987)
T PRK09782        511 QHRAVAYQAYQVEDYATALAAWQKI------------SLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA  577 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH------------hccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH
Confidence            3555777778999999999999985            344444 456889999999999999999999999999999988


Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701         114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN  193 (342)
Q Consensus       114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (342)
                      .+..++......|++++|+..++++++.+|+ ..++..+|.++.+.|++++|+..+++++..+|+++.++..+|.++...
T Consensus       578 l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~  656 (987)
T PRK09782        578 LYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS  656 (987)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            8877777777889999999999999999997 889999999999999999999999999999999999999999999999


Q ss_pred             cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q psy3701         194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFH  273 (342)
Q Consensus       194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  273 (342)
                      |++++|+..|+++++..|++                                    +.++.++|.++...|++++|+..|
T Consensus       657 G~~eeAi~~l~~AL~l~P~~------------------------------------~~a~~nLA~al~~lGd~~eA~~~l  700 (987)
T PRK09782        657 GDIAQSREMLERAHKGLPDD------------------------------------PALIRQLAYVNQRLDDMAATQHYA  700 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999998                                    589999999999999999999999


Q ss_pred             HHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcCCCCCC
Q psy3701         274 KQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG  340 (342)
Q Consensus       274 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  340 (342)
                      +++++..|++..+....|.+.....+++.|.+.+++...++|+.. +....+.++-...+-.++.+|
T Consensus       701 ~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~~~~~~~  766 (987)
T PRK09782        701 RLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNVGGAAPG  766 (987)
T ss_pred             HHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccccCCCCC
Confidence            999999999999999999999999999999999999999999888 777777766655554444443

>KOG0547|consensus

Probab=99.95  E-value=2.6e-25  Score=180.26  Aligned_cols=246  Identities=16%  Similarity=0.132  Sum_probs=219.7

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      +..+...|-.++-.|+.-.|...|+++            +..+|.+...|..+|.+|...++.++....|.+|..++|.+
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~------------I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n  393 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAA------------IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN  393 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHH------------HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC
Confidence            566777888889999999999999985            69999999889999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      +++|+..|.+++-.+++++|+.-|++++.++|++..++..++...+++++++++...|+.+.+..|+.++++...|.++.
T Consensus       394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt  473 (606)
T KOG0547|consen  394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT  473 (606)
T ss_pred             CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH-HHHhhhHHHHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV-NRKLKKYEEAL  270 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~  270 (342)
                      .++++++|++.|.+++++.|.....                            ..  .+..+..-|.+ +...+++..|+
T Consensus       474 DqqqFd~A~k~YD~ai~LE~~~~~~----------------------------~v--~~~plV~Ka~l~~qwk~d~~~a~  523 (606)
T KOG0547|consen  474 DQQQFDKAVKQYDKAIELEPREHLI----------------------------IV--NAAPLVHKALLVLQWKEDINQAE  523 (606)
T ss_pred             hHHhHHHHHHHHHHHHhhccccccc----------------------------cc--cchhhhhhhHhhhchhhhHHHHH
Confidence            9999999999999999999984200                            00  01222223322 22459999999


Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         271 EFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       271 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      ..++++++++|....++..||.+..++|+.++|+++|+++..+.....+
T Consensus       524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E  572 (606)
T KOG0547|consen  524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESE  572 (606)
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999999999999999887655443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=1.9e-24  Score=185.45  Aligned_cols=249  Identities=13%  Similarity=0.043  Sum_probs=204.8

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC----chHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC----HLPALYV  152 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l  152 (342)
                      .....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ...+..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            345667779999999999999999999999999999999999999999999999999999999854332    2456778


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh--
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG--  230 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--  230 (342)
                      |.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+...    .....+..++  
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~la~~  189 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----EIAHFYCELAQQ  189 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988765311    0111111222  


Q ss_pred             ----hhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHhCChHHHH
Q psy3701         231 ----HKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-ASTFCCIGYIQALTGDLDSAV  304 (342)
Q Consensus       231 ----~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~  304 (342)
                          ....++...+.. ....|....++..+|.++...|++++|+..++++++.+|.+ ..++..++.++...|++++|+
T Consensus       190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  269 (389)
T PRK11788        190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL  269 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence                223344444444 33456667889999999999999999999999999998876 466788999999999999999


Q ss_pred             HHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         305 NYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       305 ~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ..++++++..|+.... ..++.++..
T Consensus       270 ~~l~~~~~~~p~~~~~-~~la~~~~~  294 (389)
T PRK11788        270 EFLRRALEEYPGADLL-LALAQLLEE  294 (389)
T ss_pred             HHHHHHHHhCCCchHH-HHHHHHHHH
Confidence            9999999999987554 666666544

>KOG1155|consensus

Probab=99.95  E-value=3.7e-24  Score=172.52  Aligned_cols=268  Identities=17%  Similarity=0.114  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHH---------HHH------HHHHHHHHhcCC--CcHHHHHHHHHHHHHh
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALL---------ADL------FKLAHELVDLYP--DSAIAWYAVGCYYYLI   91 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---------~~a------~~~~~~~~~~~p--~~~~~~~~l~~~~~~~   91 (342)
                      ..+.-.+|+.|.++...|....|++.|.....         .+.      +.....++..-|  .+...-+-++.++...
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el  240 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL  240 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence            34567788899999999999999999988762         000      001111111111  1111222233333334


Q ss_pred             CChHHHHHHHHHHhhc-CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------------------------
Q psy3701          92 GRSDPARRFLGKATSL-DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------------------------  145 (342)
Q Consensus        92 ~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------  145 (342)
                      .+.++++.-++..... .|.+...-...|.+.....++++|+..|+...+.+|-.                         
T Consensus       241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~  320 (559)
T KOG1155|consen  241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ  320 (559)
T ss_pred             HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence            4444444444444444 44444444444555555555555555555555444421                         


Q ss_pred             ---------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc
Q psy3701         146 ---------HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE  216 (342)
Q Consensus       146 ---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  216 (342)
                               ++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+   
T Consensus       321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D---  397 (559)
T KOG1155|consen  321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD---  397 (559)
T ss_pred             HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---
Confidence                     11111223344444555555555555555555555555555555555555555555555555555555   


Q ss_pred             ccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701         217 IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL  296 (342)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  296 (342)
                                                       ..+|+.+|.+|.-++...=|+-+|++|.+..|+++..|..+|.||.+
T Consensus       398 ---------------------------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k  444 (559)
T KOG1155|consen  398 ---------------------------------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK  444 (559)
T ss_pred             ---------------------------------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence                                             35555555555555555555555555555555555555555555555


Q ss_pred             hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         297 TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       297 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      +++.++|+.+|.+++.....+..++..|+.+++++.
T Consensus       445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~  480 (559)
T KOG1155|consen  445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK  480 (559)
T ss_pred             hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555444

>KOG0547|consensus

Probab=99.95  E-value=6.7e-25  Score=177.89  Aligned_cols=269  Identities=16%  Similarity=0.085  Sum_probs=193.1

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      .+..+-.+|+-++..|+|++||++|.++            +...|+.+..+.+++-||...|+|++.++...++++++|+
T Consensus       114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~A------------I~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~  181 (606)
T KOG0547|consen  114 YAAALKTKGNKFFRNKKYDEAIKYYTQA------------IELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD  181 (606)
T ss_pred             HHHHHHhhhhhhhhcccHHHHHHHHHHH------------HhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence            3455556999999999999999999997            5888888889999999999999999999999999999999


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHH------------------HHhcc-------------------------------
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYF------------------NAFNL-------------------------------  141 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~~-------------------------------  141 (342)
                      ...+++..+.++...|++++|+....                  +.+..                               
T Consensus       182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF  261 (606)
T KOG0547|consen  182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF  261 (606)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence            88888888888888888777765322                  11111                               


Q ss_pred             --------------------------------------------------C-CCC---------chHHHHHHHHHhhhCC
Q psy3701         142 --------------------------------------------------F-KGC---------HLPALYVGLECGLTNN  161 (342)
Q Consensus       142 --------------------------------------------------~-~~~---------~~~~~~l~~~~~~~~~  161 (342)
                                                                        . ..+         ..++...|..+...|+
T Consensus       262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~  341 (606)
T KOG0547|consen  262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD  341 (606)
T ss_pred             cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence                                                              0 001         2334445566666677


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh--hHHHHhhhhHHHHHHH
Q psy3701         162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE--PLLNNLGHKAEDKVKQ  239 (342)
Q Consensus       162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  239 (342)
                      .-.|.+.|++++.++|.++..+..+|.+|...++.++-...|.++..++|.++    ...+.  ...+.++ ..+++...
T Consensus       342 ~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~----dvYyHRgQm~flL~-q~e~A~aD  416 (606)
T KOG0547|consen  342 SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP----DVYYHRGQMRFLLQ-QYEEAIAD  416 (606)
T ss_pred             chhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----chhHhHHHHHHHHH-HHHHHHHH
Confidence            77777777777776666666666666666666666666677777776666664    11111  1111122 22223333


Q ss_pred             hch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         240 LGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       240 ~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                      +++ ....|..+-.+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++++|++.|.+++++.|.
T Consensus       417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            333 34455557788888888888888888888888888888888888888888888888888888888888888887

>PRK12370 invasion protein regulator; Provisional

Probab=99.94  E-value=1.4e-24  Score=192.34  Aligned_cols=213  Identities=16%  Similarity=0.011  Sum_probs=189.7

Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC---------ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHH
Q psy3701          62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG---------RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM  132 (342)
Q Consensus        62 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  132 (342)
                      +|+..++++++.+|+++.++..+|.++...+         ++++|+..++++++++|+++.++..+|.++...|++++|+
T Consensus       279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~  358 (553)
T PRK12370        279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS  358 (553)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence            3444444467999999999999999887543         4789999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh-h
Q psy3701         133 AAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKV-K  211 (342)
Q Consensus       133 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~  211 (342)
                      ..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |
T Consensus       359 ~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p  438 (553)
T PRK12370        359 LLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ  438 (553)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999998887777878888999999999999999876 4


Q ss_pred             hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701         212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG  291 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  291 (342)
                      ..                                    +..+..+|.++...|++++|+..+++.....|.....+..++
T Consensus       439 ~~------------------------------------~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~  482 (553)
T PRK12370        439 DN------------------------------------PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY  482 (553)
T ss_pred             cC------------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            44                                    578899999999999999999999999888898888999999


Q ss_pred             HHHHHhCChHHHHHHHHHHHh
Q psy3701         292 YIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       292 ~~~~~~g~~~~A~~~~~~al~  312 (342)
                      ..+...|+  .|...+++.++
T Consensus       483 ~~~~~~g~--~a~~~l~~ll~  501 (553)
T PRK12370        483 AEYCQNSE--RALPTIREFLE  501 (553)
T ss_pred             HHHhccHH--HHHHHHHHHHH
Confidence            99998885  66666666554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.94  E-value=6.9e-26  Score=184.81  Aligned_cols=251  Identities=17%  Similarity=0.095  Sum_probs=118.1

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH
Q psy3701          36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDL-YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA  114 (342)
Q Consensus        36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  114 (342)
                      +..+..+...|++++|++.+.+..           ... .|+++..|..+|.+....++++.|+..|++++..++.++..
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~-----------~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~   80 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAA-----------QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD   80 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            356999999999999999997652           344 58899999999999999999999999999999999999998


Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHH
Q psy3701         115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA--HEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~  192 (342)
                      +..++.+ ...+++++|+..++++.+..+ ++..+.....++...++++++...++++....  +.++.+|..+|.++..
T Consensus        81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~  158 (280)
T PF13429_consen   81 YERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ  158 (280)
T ss_dssp             ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred             ccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            8888888 799999999999999988765 45666777788999999999999999977655  6788999999999999


Q ss_pred             hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH
Q psy3701         193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF  272 (342)
Q Consensus       193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (342)
                      .|++++|+..++++++.+|++                                    ..+...++.++...|+++++...
T Consensus       159 ~G~~~~A~~~~~~al~~~P~~------------------------------------~~~~~~l~~~li~~~~~~~~~~~  202 (280)
T PF13429_consen  159 LGDPDKALRDYRKALELDPDD------------------------------------PDARNALAWLLIDMGDYDEAREA  202 (280)
T ss_dssp             CCHHHHHHHHHHHHHHH-TT-------------------------------------HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCC------------------------------------HHHHHHHHHHHHHCCChHHHHHH
Confidence            999999999999999999998                                    47888888889899999988888


Q ss_pred             HHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701         273 HKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES  335 (342)
Q Consensus       273 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  335 (342)
                      ++...+..|+++..+..+|.++..+|++++|+.+|++++..+|+|+.....++.++.+.+...
T Consensus       203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~  265 (280)
T PF13429_consen  203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD  265 (280)
T ss_dssp             HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred             HHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence            888888878888888889999999999999999999999999999999999988887766543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.94  E-value=7.8e-24  Score=172.90  Aligned_cols=233  Identities=17%  Similarity=0.109  Sum_probs=183.7

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHh---cCC-CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701          45 LENRALAADCYKGALLADLFKLAHELVD---LYP-DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH  120 (342)
Q Consensus        45 ~~~~~~A~~~~~~~~~~~a~~~~~~~~~---~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~  120 (342)
                      .+..+.++..+.+.            +.   .+| ..+..|+.+|.++...|++++|+..|+++++++|+++.+|..+|.
T Consensus        39 ~~~~e~~i~~~~~~------------l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  106 (296)
T PRK11189         39 TLQQEVILARLNQI------------LASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGI  106 (296)
T ss_pred             chHHHHHHHHHHHH------------HccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34556677777774            44   233 347889999999999999999999999999999999999999999


Q ss_pred             HHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHH
Q psy3701         121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAE  200 (342)
Q Consensus       121 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  200 (342)
                      ++...|++++|+..|+++++++|++..++..+|.++...|++++|++.++++++.+|+++.... ...+....+++++|+
T Consensus       107 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~  185 (296)
T PRK11189        107 YLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAK  185 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999984222 223345678899999


Q ss_pred             HHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH--HHH----HH
Q psy3701         201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA--LEF----HK  274 (342)
Q Consensus       201 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~----~~  274 (342)
                      ..+.+.+...+..                                      .|. .+.+....|+..++  +..    ++
T Consensus       186 ~~l~~~~~~~~~~--------------------------------------~~~-~~~~~~~lg~~~~~~~~~~~~~~~~  226 (296)
T PRK11189        186 ENLKQRYEKLDKE--------------------------------------QWG-WNIVEFYLGKISEETLMERLKAGAT  226 (296)
T ss_pred             HHHHHHHhhCCcc--------------------------------------ccH-HHHHHHHccCCCHHHHHHHHHhcCC
Confidence            9998876543322                                      111 24444445554333  222    23


Q ss_pred             HHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc-CchhHHhHHHHHHH
Q psy3701         275 QALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR-DDSFATTMLSYVIE  329 (342)
Q Consensus       275 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~  329 (342)
                      ...+..|....+|+.+|.++...|++++|+.+|+++++.+| ++.+..+.+..+..
T Consensus       227 ~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~  282 (296)
T PRK11189        227 DNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELAL  282 (296)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            33456677788999999999999999999999999999997 66666655544443

>KOG1129|consensus

Probab=99.93  E-value=2.1e-24  Score=166.87  Aligned_cols=246  Identities=17%  Similarity=0.207  Sum_probs=229.7

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH
Q psy3701          35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA  114 (342)
Q Consensus        35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  114 (342)
                      ...+|++|.+.|-+.+|.+.+++++            ...| .++.+..++.+|.+..+...|+..+...++..|.+...
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL------------~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~  292 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSL------------TQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTY  292 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHh------------hcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhh
Confidence            3459999999999999999999974            5444 68999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q psy3701         115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH  194 (342)
Q Consensus       115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (342)
                      ....++++..+++.++|.++|+.+++.+|.+.++...+|..|+..++.+-|+.+|+++++..-.+++.+.++|.|.+..+
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q psy3701         195 NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK  274 (342)
Q Consensus       195 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  274 (342)
                      +++-++..|++++.......                                 ..+++|+++|.+....|++.-|..+|+
T Consensus       373 Q~D~~L~sf~RAlstat~~~---------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfr  419 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTATQPG---------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFR  419 (478)
T ss_pred             chhhhHHHHHHHHhhccCcc---------------------------------hhhhhhhccceeEEeccchHHHHHHHH
Confidence            99999999999998765432                                 226899999999999999999999999


Q ss_pred             HHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         275 QALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       275 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      -++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.+..++++.
T Consensus       420 laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~  471 (478)
T KOG1129|consen  420 LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF  471 (478)
T ss_pred             HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence            9999999999999999999999999999999999999999998888777654

>KOG0624|consensus

Probab=99.93  E-value=4.2e-23  Score=160.71  Aligned_cols=311  Identities=16%  Similarity=0.098  Sum_probs=220.6

Q ss_pred             CCcchhhhhhcccchhhhhhhh-------hhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3701           3 AHPLSLQELLGGEGVSFFCWFS-------QLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYP   75 (342)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p   75 (342)
                      +-|+|...-+||.....+..+.       ...+..+.+-.+.+|..+...|++..|+..|..+            ++.+|
T Consensus         2 ~~p~s~~~~~g~~~~~~Lvll~~~~e~a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaA------------ve~dp   69 (504)
T KOG0624|consen    2 ALPLSDLLMIGGAACLVLVLLELFLEGAESTASPADVEKHLELGKELLARGQLSDALTHYHAA------------VEGDP   69 (504)
T ss_pred             CCchhHHHHhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HcCCc
Confidence            4577766666764333222211       3344556777788999999999999999999986            58889


Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc---------
Q psy3701          76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH---------  146 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------  146 (342)
                      ++..+++..|.+|...|+..-|+..+.+.+++.|+...+....|.++..+|++++|...|..++..+|++.         
T Consensus        70 ~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl  149 (504)
T KOG0624|consen   70 NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL  149 (504)
T ss_pred             hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence            99999999999999999988899999999999998888888888899999999998888888888877422         


Q ss_pred             ----------------------------------------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         147 ----------------------------------------LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       147 ----------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                                                              ..+...+.+|...|+...|+.-++.+-++..++.+.++.+
T Consensus       150 ~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki  229 (504)
T KOG0624|consen  150 ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI  229 (504)
T ss_pred             HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence                                                    1222234445555555555555555555555566666666


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH------------HHHHHhch-hccCCC----C
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE------------DKVKQLGG-EIIADK----W  249 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~~----~  249 (342)
                      +.+++..|+.+.++...+++++++|++..   .......+..+...++            +.+..... +...|.    .
T Consensus       230 s~L~Y~vgd~~~sL~~iRECLKldpdHK~---Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir  306 (504)
T KOG0624|consen  230 SQLLYTVGDAENSLKEIRECLKLDPDHKL---CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR  306 (504)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHccCcchhh---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence            66666667777777777777777766630   0011111111111111            11111111 122222    2


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      ......+..|+...|++.+|+..+.+++..+|++..++...+.+|.....|+.|+..|+++.+.+|++..+...+.++-
T Consensus       307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak  385 (504)
T KOG0624|consen  307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAK  385 (504)
T ss_pred             eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            3345557788899999999999999999999999999999999999999999999999999999999999988886653

>KOG1125|consensus

Probab=99.93  E-value=3e-24  Score=177.72  Aligned_cols=246  Identities=19%  Similarity=0.132  Sum_probs=206.1

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHH
Q psy3701          38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM  117 (342)
Q Consensus        38 ~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  117 (342)
                      .|..+++.|+..+|+-+|+.            +++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..
T Consensus       291 eG~~lm~nG~L~~A~LafEA------------AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLma  358 (579)
T KOG1125|consen  291 EGCNLMKNGDLSEAALAFEA------------AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMA  358 (579)
T ss_pred             HHHHHHhcCCchHHHHHHHH------------HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHH
Confidence            44455555555555555555            579999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH-------HHHHHhhhCCHHHHHHHHHHHHhhCC--CChHHHHHHHH
Q psy3701         118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY-------VGLECGLTNNARLASKFFDLALSIAH--EDPFVIHEMGV  188 (342)
Q Consensus       118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~  188 (342)
                      ||..|...|.-.+|+.++.+-+...|........       ..........+..-.+.|..+....|  .++++...||.
T Consensus       359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV  438 (579)
T KOG1125|consen  359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV  438 (579)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence            9999999999999999999999887753211110       00011222334556677777777888  79999999999


Q ss_pred             HHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701         189 IAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE  268 (342)
Q Consensus       189 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  268 (342)
                      +|...|+|++|+.+|+.++...|.+                                    ..+|..||-++....+..+
T Consensus       439 Ly~ls~efdraiDcf~~AL~v~Pnd------------------------------------~~lWNRLGAtLAN~~~s~E  482 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAALQVKPND------------------------------------YLLWNRLGATLANGNRSEE  482 (579)
T ss_pred             HHhcchHHHHHHHHHHHHHhcCCch------------------------------------HHHHHHhhHHhcCCcccHH
Confidence            9999999999999999999999999                                    5899999999999999999


Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc----------hhHHhHHHHHHHHh
Q psy3701         269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD----------SFATTMLSYVIEQL  331 (342)
Q Consensus       269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~  331 (342)
                      |+..|.+|+++.|....+++++|.++..+|.|++|.++|-.++.+.+..          ..+|..|..++..+
T Consensus       483 AIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~  555 (579)
T KOG1125|consen  483 AISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM  555 (579)
T ss_pred             HHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999887651          24677777655443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.93  E-value=1.6e-22  Score=185.79  Aligned_cols=300  Identities=12%  Similarity=-0.001  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGC   86 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~   86 (342)
                      ......+..+|.++...|++++|+..|++++                      .++|+..+++++..+|+++. +..+|.
T Consensus        46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~  124 (765)
T PRK10049         46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY  124 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence            3455567889999999999999999999975                      26677777777777777777 777777


Q ss_pred             HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHH---------------------------------
Q psy3701          87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMA---------------------------------  133 (342)
Q Consensus        87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~---------------------------------  133 (342)
                      ++...|++++|+..++++++.+|+++.++..++.++...|..++|+.                                 
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~  204 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS  204 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence            77777777777777777777777777777777777665555444333                                 


Q ss_pred             -------------HHHHHhccCCCCchHH-------HHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHH
Q psy3701         134 -------------AYFNAFNLFKGCHLPA-------LYVGLECGLTNNARLASKFFDLALSIAHEDP-FVIHEMGVIAYQ  192 (342)
Q Consensus       134 -------------~~~~al~~~~~~~~~~-------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~  192 (342)
                                   .++++++..|.++...       ......+...|++++|+..|+++++..|..+ .+...+|.++..
T Consensus       205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~  284 (765)
T PRK10049        205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK  284 (765)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence                         3333333222222111       1101223566778888888888777654322 233346888888


Q ss_pred             hcChhHHHHHHHHHHHhhhhcCcc-c-cccchhhHHHHhhhhHHHHHHHhchh-ccCC---------------CChHHHH
Q psy3701         193 NHNYTVAENCFMEALSKVKQLGGE-I-IADKWEPLLNNLGHKAEDKVKQLGGE-IIAD---------------KWEPLLN  254 (342)
Q Consensus       193 ~~~~~~A~~~~~~al~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~~~~~~~  254 (342)
                      .|++++|+..|+++++..|.+... . .......++...++ .+++...+... ...|               ....++.
T Consensus       285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~-~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~  363 (765)
T PRK10049        285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN-YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS  363 (765)
T ss_pred             cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc-HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence            888888888888888766554100 0 00011112222222 22333332221 1111               2245677


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      .+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++++|++...+..++.+...
T Consensus       364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~  439 (765)
T PRK10049        364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999998877777665544

>KOG2002|consensus

Probab=99.93  E-value=1.3e-22  Score=177.17  Aligned_cols=311  Identities=16%  Similarity=0.136  Sum_probs=226.7

Q ss_pred             hhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhcCCCcHHHH
Q psy3701          25 QLQSEMKSALLLLKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVDLYPDSAIAW   81 (342)
Q Consensus        25 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~~~p~~~~~~   81 (342)
                      +....+.+..+|.+|+++..+|+|++|..+|.++.                       ...+...+++++...|++.++.
T Consensus       300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm  379 (1018)
T KOG2002|consen  300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM  379 (1018)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence            44455778889999999999999999999999987                       3777888888888888888888


Q ss_pred             HHHHHHHHHhC----ChHHHHHHHHHHhhcCCCcHHHH--------------------------------------HHhh
Q psy3701          82 YAVGCYYYLIG----RSDPARRFLGKATSLDKLFLPAW--------------------------------------LMYG  119 (342)
Q Consensus        82 ~~l~~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~--------------------------------------~~la  119 (342)
                      ..+|..|...+    ..+.|..+..+++...|.+.++|                                      .++|
T Consensus       380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva  459 (1018)
T KOG2002|consen  380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVA  459 (1018)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence            88888888775    55777777777777776665553                                      4445


Q ss_pred             hHHHhhccHHHHHHHHHHHhcc-----CCCC-----chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy3701         120 HSFAVENEHDQAMAAYFNAFNL-----FKGC-----HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI  189 (342)
Q Consensus       120 ~~~~~~g~~~~A~~~~~~al~~-----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  189 (342)
                      ..++..|++.+|...+.+++..     +++.     ....+++|.++...++++.|.+.|..+++..|...+.+..+|.+
T Consensus       460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~m  539 (1018)
T KOG2002|consen  460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCM  539 (1018)
T ss_pred             HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHH
Confidence            5555567777777777777665     1111     12367788888888888888888888888888877777777766


Q ss_pred             HHHhcChhHHHHHHHHHHHhhhhcCccccccc-h--------------------------hhHHHHhhh-----------
Q psy3701         190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADK-W--------------------------EPLLNNLGH-----------  231 (342)
Q Consensus       190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~--------------------------~~~~~~~~~-----------  231 (342)
                      ....+...+|...+..++..+..++....... |                          ..++..+|+           
T Consensus       540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r  619 (1018)
T KOG2002|consen  540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR  619 (1018)
T ss_pred             HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence            66667777777777777776666652211110 0                          011111111           


Q ss_pred             -----------------------------------------hHHHHHHHhchhc-cCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701         232 -----------------------------------------KAEDKVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEA  269 (342)
Q Consensus       232 -----------------------------------------~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A  269 (342)
                                                               ...++...+.... .......+|.++|+||..+|+|..|
T Consensus       620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A  699 (1018)
T KOG2002|consen  620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA  699 (1018)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence                                                     0112222222211 1223457899999999999999999


Q ss_pred             HHHHHHHHhhC--CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701         270 LEFHKQALVVA--PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES  335 (342)
Q Consensus       270 ~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  335 (342)
                      ++.|+.+++..  .+++.++..||.++...|++.+|.++..+++...|.++.+.++++.++.+..+..
T Consensus       700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~  767 (1018)
T KOG2002|consen  700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI  767 (1018)
T ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence            99999999864  3567899999999999999999999999999999999999999999988876643

>PRK12370 invasion protein regulator; Provisional

Probab=99.93  E-value=2.9e-23  Score=184.01  Aligned_cols=222  Identities=11%  Similarity=-0.023  Sum_probs=193.4

Q ss_pred             CCCcHH--HHHHHHHHHHHh---CChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh---------ccHHHHHHHHHHHh
Q psy3701          74 YPDSAI--AWYAVGCYYYLI---GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE---------NEHDQAMAAYFNAF  139 (342)
Q Consensus        74 ~p~~~~--~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al  139 (342)
                      .|.+.+  .++..|..+...   +++++|+.+|+++++++|+++.++..+|.++...         +++++|+..+++++
T Consensus       252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            444444  345556555433   4578999999999999999999999999887644         34899999999999


Q ss_pred             ccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccc
Q psy3701         140 NLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA  219 (342)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  219 (342)
                      +++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++     
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-----  406 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-----  406 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999983     


Q ss_pred             cchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhC
Q psy3701         220 DKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTG  298 (342)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g  298 (342)
                                                     ..+..++.++...|++++|+..+++++... |+++..+..+|.++...|
T Consensus       407 -------------------------------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G  455 (553)
T PRK12370        407 -------------------------------AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG  455 (553)
T ss_pred             -------------------------------hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence                                           455556667778999999999999999875 788889999999999999


Q ss_pred             ChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         299 DLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       299 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      ++++|+..+++.....|++..+...++..+...
T Consensus       456 ~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        456 KHELARKLTKEISTQEITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             CHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence            999999999999999998888887777665443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.92  E-value=1.2e-22  Score=161.97  Aligned_cols=204  Identities=18%  Similarity=0.094  Sum_probs=190.3

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701          76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE  155 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  155 (342)
                      ..+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+...+..+|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701         156 CGLTNNARLASKFFDLALSIA--HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA  233 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
                      +...|++++|++.+++++...  +.....+..+|.++...|++++|...+++++...|.+                    
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------  168 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--------------------  168 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--------------------
Confidence            999999999999999999753  4567788999999999999999999999999998887                    


Q ss_pred             HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                                      ...+..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus       169 ----------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       169 ----------------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             ----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence                            4788999999999999999999999999998888899999999999999999999998887766


Q ss_pred             cc
Q psy3701         314 KR  315 (342)
Q Consensus       314 ~p  315 (342)
                      .|
T Consensus       233 ~~  234 (234)
T TIGR02521       233 FP  234 (234)
T ss_pred             Cc
Confidence            54

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.92  E-value=4.8e-22  Score=146.75  Aligned_cols=209  Identities=22%  Similarity=0.146  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      ..+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++..++.+.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701         158 LTNNARLASKFFDLALSI--AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED  235 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                      .+|++++|...|++++..  .+..+..+.++|.|..+.|+++.|..+|+++++++|+.+                     
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~---------------------  173 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP---------------------  173 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC---------------------
Confidence            999999999999999873  456678899999999999999999999999999999994                     


Q ss_pred             HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                                     .....++...+..|+|..|..++++.....+-....+.....+-...|+-+.+-++=.+..+..|
T Consensus       174 ---------------~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP  238 (250)
T COG3063         174 ---------------PALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP  238 (250)
T ss_pred             ---------------hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence                           78889999999999999999999999888888888888888899999999999999999999999


Q ss_pred             CchhHHh
Q psy3701         316 DDSFATT  322 (342)
Q Consensus       316 ~~~~~~~  322 (342)
                      ...+...
T Consensus       239 ~s~e~q~  245 (250)
T COG3063         239 YSEEYQT  245 (250)
T ss_pred             CcHHHHh
Confidence            8876543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.91  E-value=6.5e-24  Score=173.20  Aligned_cols=235  Identities=16%  Similarity=0.093  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD  108 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  108 (342)
                      ..+...|..+|.+....++++.|+..|++.            +..++.++..+..++.+ ...+++++|...++++.+..
T Consensus        41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l------------~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~  107 (280)
T PF13429_consen   41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKL------------LASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD  107 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccc------------ccccccccccccccccc-cccccccccccccccccccc
Confidence            445677778999999999999999999995            57788888888888888 79999999999999998876


Q ss_pred             CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      + ++..+.....++...++++++...+.++....  +.++..+..+|.++.+.|+.++|+..++++++.+|+++.+...+
T Consensus       108 ~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l  186 (280)
T PF13429_consen  108 G-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL  186 (280)
T ss_dssp             -----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             c-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4 46777788889999999999999999977655  56778888999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY  266 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (342)
                      +.++...|+++++...+....+..|.++                                    ..+..+|.++..+|++
T Consensus       187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~------------------------------------~~~~~la~~~~~lg~~  230 (280)
T PF13429_consen  187 AWLLIDMGDYDEAREALKRLLKAAPDDP------------------------------------DLWDALAAAYLQLGRY  230 (280)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHH-HTSC------------------------------------CHCHHHHHHHHHHT-H
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHCcCHH------------------------------------HHHHHHHHHhcccccc
Confidence            9999999999999999999888888874                                    6888999999999999


Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      ++|+.+|+++++.+|+++..+..+|.++...|+.++|..+++++++.
T Consensus       231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999988764

>KOG2076|consensus

Probab=99.91  E-value=2.3e-21  Score=168.18  Aligned_cols=289  Identities=18%  Similarity=0.102  Sum_probs=226.6

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL  112 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  112 (342)
                      .-++..|+.....|++++|..++.+            +++++|.++.+|+.+|.+|.++|+.+++..++-.|--++|++.
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~E------------vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~  207 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILME------------VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY  207 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHH------------HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence            3444566777778888888888888            5799999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh-----HHHHHHH
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP-----FVIHEMG  187 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~  187 (342)
                      +.|..++.....+|++++|.-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|...     ..-...+
T Consensus       208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~  287 (895)
T KOG2076|consen  208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA  287 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998321     1223445


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh--------------------------------------------
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE--------------------------------------------  223 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------------------------------------  223 (342)
                      ..+...++-+.|++.++.++....+-.+........                                            
T Consensus       288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~  367 (895)
T KOG2076|consen  288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL  367 (895)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence            666667777888888887776222111000000000                                            


Q ss_pred             --------------hHHHHhh----hhHHHHHHHhchhc--cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-
Q psy3701         224 --------------PLLNNLG----HKAEDKVKQLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-  282 (342)
Q Consensus       224 --------------~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-  282 (342)
                                    .....+-    .-..+.+..+....  .....+..+..++.++...|++.+|+.++..+....+. 
T Consensus       368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~  447 (895)
T KOG2076|consen  368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ  447 (895)
T ss_pred             ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence                          0000000    00001111111111  24455789999999999999999999999998876653 


Q ss_pred             chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         283 KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       283 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      +..+|+.+|.||..+|.+++|+++|++++...|++.+++..|+.++.+.+.
T Consensus       448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~  498 (895)
T KOG2076|consen  448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN  498 (895)
T ss_pred             chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Confidence            457899999999999999999999999999999999999999999887654

>KOG2002|consensus

Probab=99.91  E-value=5.4e-22  Score=173.27  Aligned_cols=238  Identities=15%  Similarity=0.169  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhhccHHHHHHHHHHHh
Q psy3701          61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFAVENEHDQAMAAYFNAF  139 (342)
Q Consensus        61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al  139 (342)
                      +.|...+..+++..|++..++...|.+.+..++|..|+.+|++++.++|.. ++..+.+|.|+..+|+.+.|+..|++++
T Consensus       147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral  226 (1018)
T KOG2002|consen  147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL  226 (1018)
T ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHH
Confidence            456666666667777777777777777777777777777777777776653 4456666777777777777777777777


Q ss_pred             ccCCCCchHHHHHHHHHhhh---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc
Q psy3701         140 NLFKGCHLPALYVGLECGLT---NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE  216 (342)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  216 (342)
                      +++|.+..++..+|.+-...   ..+..+...+.++...+|.+|.++..++.-++..|+|+.+..+...++......   
T Consensus       227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~---  303 (1018)
T KOG2002|consen  227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK---  303 (1018)
T ss_pred             hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---
Confidence            77776666666666654433   345666777777777777777777777777777777777777776666654222   


Q ss_pred             ccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHH
Q psy3701         217 IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-ASTFCCIGYIQA  295 (342)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~  295 (342)
                                                    +..++.++.+|.+|..+|+|++|..+|.++++.+|++ .-.++.+|..+.
T Consensus       304 ------------------------------~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i  353 (1018)
T KOG2002|consen  304 ------------------------------SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI  353 (1018)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence                                          2225678888999999999999999999988888887 667888889999


Q ss_pred             HhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         296 LTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       296 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      ..|+++.|..+|++++...|++.+....||.++...
T Consensus       354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            999999999999999999999888888888888765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.91  E-value=1e-21  Score=160.43  Aligned_cols=226  Identities=17%  Similarity=0.142  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          28 SEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        28 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      +......++.+|.++...|++++|+..|+++            ++.+|+++.+|+.+|.++...|++++|+..|++++++
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~A------------l~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  127 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQA------------LALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL  127 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3445677889999999999999999999996            5899999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG  187 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  187 (342)
                      +|++..++..+|.++...|++++|+..++++++.+|+++....+ ..+....+++++|+..+.+.....+.+.  |. .+
T Consensus       128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~  203 (296)
T PRK11189        128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WN  203 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HH
Confidence            99999999999999999999999999999999999998742222 2234557889999999988765443222  22 45


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      .+....|+..++ ..++.+.+..+..+                             ...+....+|+.+|.++...|+++
T Consensus       204 ~~~~~lg~~~~~-~~~~~~~~~~~~~~-----------------------------~l~~~~~ea~~~Lg~~~~~~g~~~  253 (296)
T PRK11189        204 IVEFYLGKISEE-TLMERLKAGATDNT-----------------------------ELAERLCETYFYLAKYYLSLGDLD  253 (296)
T ss_pred             HHHHHccCCCHH-HHHHHHHhcCCCcH-----------------------------HHHHHHHHHHHHHHHHHHHCCCHH
Confidence            666677777554 34444432211110                             001122579999999999999999


Q ss_pred             HHHHHHHHHHhhCC-CchHHHHHHHHHHHHhCC
Q psy3701         268 EALEFHKQALVVAP-MKASTFCCIGYIQALTGD  299 (342)
Q Consensus       268 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~  299 (342)
                      +|+.+|+++++.+| +..+..+.+..+....++
T Consensus       254 ~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        254 EAAALFKLALANNVYNFVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence            99999999999997 666666655555544433

>KOG1173|consensus

Probab=99.91  E-value=7.1e-22  Score=163.21  Aligned_cols=249  Identities=19%  Similarity=0.210  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH
Q psy3701          49 ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH  128 (342)
Q Consensus        49 ~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  128 (342)
                      ++|..+|....+.+..++.+.+++.+|-++..+-..-.++..+|+..+-...-.+.+...|+.+-.|+..|.-|...|++
T Consensus       249 ~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~  328 (611)
T KOG1173|consen  249 EKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY  328 (611)
T ss_pred             HHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence            46778888999999999999999999988877755545999999988888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701         129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS  208 (342)
Q Consensus       129 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  208 (342)
                      .+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|...++++-|.++|.+|+.
T Consensus       329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a  408 (611)
T KOG1173|consen  329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA  408 (611)
T ss_pred             HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC-------
Q psy3701         209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP-------  281 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------  281 (342)
                      +.|.+|                                    .++..+|.+....+.|.+|..+|++++..-+       
T Consensus       409 i~P~Dp------------------------------------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~  452 (611)
T KOG1173|consen  409 IAPSDP------------------------------------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI  452 (611)
T ss_pred             cCCCcc------------------------------------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence            999994                                    7899999999999999999999999995322       


Q ss_pred             CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      .....+.++|.++.+.+.+++|+.+|++++.+.|.++.++..+|.++..++.
T Consensus       453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn  504 (611)
T KOG1173|consen  453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN  504 (611)
T ss_pred             chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence            2345689999999999999999999999999999999999999988876543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.91  E-value=2.5e-21  Score=154.29  Aligned_cols=204  Identities=19%  Similarity=0.164  Sum_probs=185.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK  109 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  109 (342)
                      .....++.+|..+...|++++|+..++++            +..+|++..++..+|.++...|++++|+..++++++..|
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~   96 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKA------------LEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP   96 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            34667788999999999999999999996            477899999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701         110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG  187 (342)
Q Consensus       110 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  187 (342)
                      .+..++..+|.++...|++++|+..+++++...  +.....+..+|.++...|++++|...+++++...|+++..+..+|
T Consensus        97 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la  176 (234)
T TIGR02521        97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA  176 (234)
T ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHH
Confidence            999999999999999999999999999999864  445667888999999999999999999999999999999999999


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      .++...|++++|+..+++++...|.+                                    ...+..++.++...|+.+
T Consensus       177 ~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~  220 (234)
T TIGR02521       177 ELYYLRGQYKDARAYLERYQQTYNQT------------------------------------AESLWLGIRIARALGDVA  220 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHHhhHH
Confidence            99999999999999999999986655                                    467778899999999999


Q ss_pred             HHHHHHHHHHhhCC
Q psy3701         268 EALEFHKQALVVAP  281 (342)
Q Consensus       268 ~A~~~~~~al~~~~  281 (342)
                      +|..+.+.+....|
T Consensus       221 ~a~~~~~~~~~~~~  234 (234)
T TIGR02521       221 AAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHHHhhCc
Confidence            99999887766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2003|consensus

Probab=99.91  E-value=1.4e-21  Score=157.98  Aligned_cols=276  Identities=15%  Similarity=0.085  Sum_probs=196.8

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHhhcCCC
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY-PDSAIAWYAVGCYYYLIG--RSDPARRFLGKATSLDKL  110 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~  110 (342)
                      +-..++-.+++.|+++.|++.++--.            +.+ .....+-.++...++.+|  ++..|..+...++.++..
T Consensus       421 lei~ka~~~lk~~d~~~aieilkv~~------------~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry  488 (840)
T KOG2003|consen  421 LEINKAGELLKNGDIEGAIEILKVFE------------KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY  488 (840)
T ss_pred             hhhhHHHHHHhccCHHHHHHHHHHHH------------hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc
Confidence            33357778888999999988776521            222 122233344444444433  566777777777777777


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                      ++.+..+.|.+.+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+++|-+.-.+--++..++..++.+|
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            77777777777777777777777777777777767777777777777777777777777776666666777777777777


Q ss_pred             HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH------HHHH-HhchhccCCCChHHHHHHHHHHHHh
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE------DKVK-QLGGEIIADKWEPLLNNLGHVNRKL  263 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~  263 (342)
                      ..+.+..+|++++.++..+-|.+|         .++..++..+.      .+.+ .++.....|...+..-.+|..|...
T Consensus       569 e~led~aqaie~~~q~~slip~dp---------~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt  639 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSLIPNDP---------AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT  639 (840)
T ss_pred             HHhhCHHHHHHHHHHhcccCCCCH---------HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence            777777777777777777777665         44444444332      1111 2222344555567888899999999


Q ss_pred             hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         264 KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       264 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      .-+++|+.+|+++.-+.|+...-...++.|+.+.|+|..|.+.|+...+..|.+.+....|.++...
T Consensus       640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d  706 (840)
T KOG2003|consen  640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD  706 (840)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence            9999999999999999999888888899999999999999999999999999999887777666443

>PLN02789 farnesyltranstransferase

Probab=99.90  E-value=8.4e-21  Score=154.51  Aligned_cols=233  Identities=8%  Similarity=-0.061  Sum_probs=198.4

Q ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701          42 YEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH  120 (342)
Q Consensus        42 ~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~  120 (342)
                      +...+.+++|+..+.+            ++..+|.+..+|...|.++..+| ++++++.+++++++.+|++..+|...+.
T Consensus        47 l~~~e~serAL~lt~~------------aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~  114 (320)
T PLN02789         47 YASDERSPRALDLTAD------------VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW  114 (320)
T ss_pred             HHcCCCCHHHHHHHHH------------HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence            3444555555555555            67999999999999999999998 6899999999999999999999999999


Q ss_pred             HHHhhccH--HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh---cC
Q psy3701         121 SFAVENEH--DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN---HN  195 (342)
Q Consensus       121 ~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~  195 (342)
                      ++...|+.  ++++.++.++++.+|.+..+|...+.++...|+++++++.+.++++.+|.+..+|+..+.+....   |+
T Consensus       115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence            99888874  78899999999999999999999999999999999999999999999999999999999998776   33


Q ss_pred             h----hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHH
Q psy3701         196 Y----TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYE  267 (342)
Q Consensus       196 ~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  267 (342)
                      +    ++++.+..+++..+|++                                    ..+|..++.++..    .++..
T Consensus       195 ~~~~~e~el~y~~~aI~~~P~N------------------------------------~SaW~Yl~~ll~~~~~~l~~~~  238 (320)
T PLN02789        195 LEAMRDSELKYTIDAILANPRN------------------------------------ESPWRYLRGLFKDDKEALVSDP  238 (320)
T ss_pred             ccccHHHHHHHHHHHHHhCCCC------------------------------------cCHHHHHHHHHhcCCcccccch
Confidence            3    46888889999999999                                    4799999999987    45678


Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHHHhC------------------ChHHHHHHHHHHHhcccCchhHHh
Q psy3701         268 EALEFHKQALVVAPMKASTFCCIGYIQALTG------------------DLDSAVNYFHKTMALKRDDSFATT  322 (342)
Q Consensus       268 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~  322 (342)
                      +|++.+.+++...|.++.++..++.++....                  ..++|...++..-+.+|--..-|.
T Consensus       239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~  311 (320)
T PLN02789        239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA  311 (320)
T ss_pred             hHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence            8999999999999999999999999998632                  235677777777555664444333

>KOG0548|consensus

Probab=99.90  E-value=1e-20  Score=155.75  Aligned_cols=145  Identities=17%  Similarity=0.157  Sum_probs=108.8

Q ss_pred             HHHHHHHhcChhHHHHHHHHHHHhhhhcC----------------------cccc--ccchhhHHHHhhhhHHHHHHHhc
Q psy3701         186 MGVIAYQNHNYTVAENCFMEALSKVKQLG----------------------GEII--ADKWEPLLNNLGHKAEDKVKQLG  241 (342)
Q Consensus       186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~  241 (342)
                      +|..+...++++.|+.+|++++.......                      .+..  ......-.+..+++. .++..+.
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~-~Av~~Yt  382 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP-EAVKHYT  382 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH-HHHHHHH
Confidence            45566666777777777777765443311                      0100  000112222222332 3333333


Q ss_pred             h-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhH
Q psy3701         242 G-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA  320 (342)
Q Consensus       242 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  320 (342)
                      + ....|..+.+|.+.|.||.++|.+..|+...+++++++|+...+|...|.++..+.+|++|.+.|+++++.+|++.++
T Consensus       383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            3 556677789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHh
Q psy3701         321 TTMLSYVIEQL  331 (342)
Q Consensus       321 ~~~l~~~~~~~  331 (342)
                      ...+.+|+...
T Consensus       463 ~~~~~rc~~a~  473 (539)
T KOG0548|consen  463 IDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHh
Confidence            99999999864

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.90  E-value=1.5e-20  Score=139.00  Aligned_cols=210  Identities=17%  Similarity=0.130  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD  108 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  108 (342)
                      .....+...+|--|+..|++..|...++++            ++.+|++..+|..++.+|...|+.+.|.+.|++|+.++
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekA------------L~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~   99 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKA------------LEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA   99 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Confidence            345567778999999999999999999997            59999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc--CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL--FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      |++.+++.+.|..++.+|++++|...|++++..  .+....++-++|.|..+.|+++.|..+|+++++.+|+.+.....+
T Consensus       100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~  179 (250)
T COG3063         100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLEL  179 (250)
T ss_pred             CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHH
Confidence            999999999999999999999999999999975  355678899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY  266 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (342)
                      +..++..|+|-.|..++++.....+..                                    ++.+.....+-...|+-
T Consensus       180 a~~~~~~~~y~~Ar~~~~~~~~~~~~~------------------------------------A~sL~L~iriak~~gd~  223 (250)
T COG3063         180 ARLHYKAGDYAPARLYLERYQQRGGAQ------------------------------------AESLLLGIRIAKRLGDR  223 (250)
T ss_pred             HHHHHhcccchHHHHHHHHHHhccccc------------------------------------HHHHHHHHHHHHHhccH
Confidence            999999999999999999987776644                                    45666666777788999


Q ss_pred             HHHHHHHHHHHhhCCCchHH
Q psy3701         267 EEALEFHKQALVVAPMKAST  286 (342)
Q Consensus       267 ~~A~~~~~~al~~~~~~~~~  286 (342)
                      +.+-++=.+..+..|...+.
T Consensus       224 ~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         224 AAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHHHHHHHhCCCcHHH
Confidence            99988888888888887654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.90  E-value=1.4e-20  Score=173.12  Aligned_cols=199  Identities=10%  Similarity=-0.099  Sum_probs=143.7

Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcH-HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC----chHHHHHHHHHhhhCCHH
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFL-PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC----HLPALYVGLECGLTNNAR  163 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~  163 (342)
                      ...|++++|+..|+++++..|..+ .+...+|.++...|++++|+..|++++..+|.+    ......++.++...|+++
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence            455666666666666666543221 223334666666666666666666666665544    123444555566666666


Q ss_pred             HHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701         164 LASKFFDLALSIAHED---------------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN  228 (342)
Q Consensus       164 ~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      +|+..++++....|..               ..++..+|.++...|++++|+..+++++...|.+               
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---------------  392 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN---------------  392 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------
Confidence            6666666666655421               2345566666666666666666666666666666               


Q ss_pred             hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701         229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                                           ..++..+|.++...|++++|+..+++++..+|++..+++.+|.++...|++++|...++
T Consensus       393 ---------------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~  451 (765)
T PRK10049        393 ---------------------QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD  451 (765)
T ss_pred             ---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                                 68999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccCchhHHhH
Q psy3701         309 KTMALKRDDSFATTM  323 (342)
Q Consensus       309 ~al~~~p~~~~~~~~  323 (342)
                      ++++..|+++.+...
T Consensus       452 ~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        452 DVVAREPQDPGVQRL  466 (765)
T ss_pred             HHHHhCCCCHHHHHH
Confidence            999999999976543

>PLN02789 farnesyltranstransferase

Probab=99.89  E-value=5.7e-21  Score=155.51  Aligned_cols=217  Identities=9%  Similarity=-0.029  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc-cHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN-EHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      +++-.+-.++...++.++|+..+.++++++|++..+|...+.++...| ++++++..+.++++.+|++..+|...+.++.
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~  117 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence            333333334455678999999999999999999999999999999998 6899999999999999999999999999998


Q ss_pred             hhCCH--HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701         158 LTNNA--RLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED  235 (342)
Q Consensus       158 ~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                      ..|+.  ++++.+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+                      
T Consensus       118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N----------------------  175 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN----------------------  175 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc----------------------
Confidence            88874  788999999999999999999999999999999999999999999999999                      


Q ss_pred             HHHHhchhccCCCChHHHHHHHHHHHHh---hhH----HHHHHHHHHHHhhCCCchHHHHHHHHHHHH----hCChHHHH
Q psy3701         236 KVKQLGGEIIADKWEPLLNNLGHVNRKL---KKY----EEALEFHKQALVVAPMKASTFCCIGYIQAL----TGDLDSAV  304 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~  304 (342)
                                    ..+|..++.++...   |.+    ++++.+..+++..+|++..+|..++.++..    .++..+|.
T Consensus       176 --------------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~  241 (320)
T PLN02789        176 --------------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS  241 (320)
T ss_pred             --------------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence                          48999999888765   333    578889999999999999999999999988    45678899


Q ss_pred             HHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         305 NYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       305 ~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      ..+.+++...|+++.+...|..++..-
T Consensus       242 ~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        242 SVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence            999999999999999999999888753

>TIGR00540 hemY_coli hemY protein

Probab=99.88  E-value=1.2e-19  Score=155.40  Aligned_cols=265  Identities=11%  Similarity=-0.023  Sum_probs=177.2

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH-
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL-  112 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-  112 (342)
                      .....|......|+++.|.+...++            .+..|+....+...|.++...|+++.|..++.++.+..|++. 
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~------------~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l  153 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKN------------ADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI  153 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHH------------hhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch
Confidence            3345666667777777777777664            466677677777778888888888888888888887777764 


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh-----------------
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI-----------------  175 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------------  175 (342)
                      .+....+.++...|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+.                 
T Consensus       154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~  233 (409)
T TIGR00540       154 LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEI  233 (409)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            455556888888888888888888888888888888888888888888888777766666533                 


Q ss_pred             ---------------------CC----CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701         176 ---------------------AH----EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG  230 (342)
Q Consensus       176 ---------------------~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                                           .|    +++.++..++..+...|++++|...++++++..|++...... ..........
T Consensus       234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~  312 (409)
T TIGR00540       234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKP  312 (409)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCC
Confidence                                 23    356677778888888888999999999988888877411000 0000000000


Q ss_pred             hhHHHHHHHhch-hccCCCCh--HHHHHHHHHHHHhhhHHHHHHHHH--HHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701         231 HKAEDKVKQLGG-EIIADKWE--PLLNNLGHVNRKLKKYEEALEFHK--QALVVAPMKASTFCCIGYIQALTGDLDSAVN  305 (342)
Q Consensus       231 ~~~~~~~~~~~~-~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  305 (342)
                      .........+.. ....|..+  .....+|.++.+.|++++|.++|+  .+++..|+... +..+|.++.+.|+.++|.+
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~  391 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAA  391 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence            111222222222 33455555  566677777777777777777777  45556665544 4467777777777777777


Q ss_pred             HHHHHHh
Q psy3701         306 YFHKTMA  312 (342)
Q Consensus       306 ~~~~al~  312 (342)
                      ++++++.
T Consensus       392 ~~~~~l~  398 (409)
T TIGR00540       392 MRQDSLG  398 (409)
T ss_pred             HHHHHHH
Confidence            7777654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.88  E-value=4.4e-19  Score=160.81  Aligned_cols=300  Identities=10%  Similarity=-0.079  Sum_probs=194.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHH----------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALL----------------------ADLFKLAHELVDLYPDSAIAWYAVGCYY   88 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~   88 (342)
                      .....+..+....+.|+++.|++.|++++.                      ++|+..+++++...|........+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            344667788888899999999999888761                      4555566665533334444444456677


Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF  168 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  168 (342)
                      ...|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|..... ..++.++...++..+|++.
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777764333 3344444445566557777


Q ss_pred             HHHHHhhCCCChHHHHH---------------------------------------------------------------
Q psy3701         169 FDLALSIAHEDPFVIHE---------------------------------------------------------------  185 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~---------------------------------------------------------------  185 (342)
                      ++++++.+|++..++..                                                               
T Consensus       192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al  271 (822)
T PRK14574        192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL  271 (822)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence            77777777665544222                                                               


Q ss_pred             -------------------------------------------------------------HHHHHHHhcChhHHHHHHH
Q psy3701         186 -------------------------------------------------------------MGVIAYQNHNYTVAENCFM  204 (342)
Q Consensus       186 -------------------------------------------------------------l~~~~~~~~~~~~A~~~~~  204 (342)
                                                                                   .|..|...++.++|+.+|+
T Consensus       272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~  351 (822)
T PRK14574        272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS  351 (822)
T ss_pred             HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence                                                                         2333333333333333333


Q ss_pred             HHHHhhhhcC---cccc-ccchhhHHHHhhhhHHHHHHHhch----------------hccCCCChHHHHHHHHHHHHhh
Q psy3701         205 EALSKVKQLG---GEII-ADKWEPLLNNLGHKAEDKVKQLGG----------------EIIADKWEPLLNNLGHVNRKLK  264 (342)
Q Consensus       205 ~al~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~g  264 (342)
                      +++...|...   .... ......++...+++ +++...+..                ....|++......++.++...|
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~-~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g  430 (822)
T PRK14574        352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQL-DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN  430 (822)
T ss_pred             HHhhccccccCCCcchHHHHHHHHHHHhcccH-HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence            3333221100   0000 00011111111111 111111111                1245566778888999999999


Q ss_pred             hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       265 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ++.+|++.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|++..+...++.+...+.
T Consensus       431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~  498 (822)
T PRK14574        431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ  498 (822)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999988888877765543

>KOG1174|consensus

Probab=99.88  E-value=4.3e-19  Score=141.74  Aligned_cols=249  Identities=12%  Similarity=0.084  Sum_probs=195.2

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH----------------------------------HHH
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA----------------------------------WLM  117 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------------------------~~~  117 (342)
                      ..-|++...+..+|.+++..|++++|+..|+++..++|.....                                  |+-
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV  305 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV  305 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence            5556666666666666666666666666666666666654332                                  555


Q ss_pred             hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701         118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT  197 (342)
Q Consensus       118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (342)
                      -+...+...++..|+.+-+++++.+|.+..++...|..+...|+.++|+-.|+.+..+.|...+.+..+-.+|...|++.
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence            55666667778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhhhhcCccccccchhhHHHHhh--------hhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701         198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLG--------HKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEE  268 (342)
Q Consensus       198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~  268 (342)
                      +|......++..-|.+.         ..+..+|        ...+.+...+++ ....|.+..+-..++..+...|++.+
T Consensus       386 EA~~~An~~~~~~~~sA---------~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D  456 (564)
T KOG1174|consen  386 EANALANWTIRLFQNSA---------RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD  456 (564)
T ss_pred             HHHHHHHHHHHHhhcch---------hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence            88888888888877774         3333333        122233333333 56788888899999999999999999


Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ++..+++.+...|+ ...+..+|.++...+.+.+|+++|..+++++|++..+...|.++-++
T Consensus       457 ~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~  517 (564)
T KOG1174|consen  457 IIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS  517 (564)
T ss_pred             HHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence            99999999998875 45788999999999999999999999999999999998888766544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.88  E-value=2.8e-19  Score=152.36  Aligned_cols=262  Identities=11%  Similarity=-0.046  Sum_probs=178.1

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAV-GCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ..-.+..|......|++++|.+...++             ...++++..++.+ +......|+++.|..++.++.+.+|+
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~-------------~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~  150 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRN-------------ADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADN  150 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHH-------------HhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence            334456677777778888887666664             2223334544444 55668899999999999999988888


Q ss_pred             cHHH-HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC-------------
Q psy3701         111 FLPA-WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA-------------  176 (342)
Q Consensus       111 ~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------  176 (342)
                      +..+ ....+.++...|++++|+..+++..+..|+++.++..++.+|...|++++|++.+.+..+..             
T Consensus       151 ~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~  230 (398)
T PRK10747        151 DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQ  230 (398)
T ss_pred             chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            7543 34458888999999999999999999999999999999999999999999886666555322             


Q ss_pred             -----------------------------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701         177 -----------------------------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN  227 (342)
Q Consensus       177 -----------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  227 (342)
                                                   |+++.+...++..+...|+.++|...++++++..++..     ........
T Consensus       231 a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~-----l~~l~~~l  305 (398)
T PRK10747        231 AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER-----LVLLIPRL  305 (398)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-----HHHHHhhc
Confidence                                         34566677778888888999999999888888444331     00000000


Q ss_pred             HhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHH
Q psy3701         228 NLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNY  306 (342)
Q Consensus       228 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  306 (342)
                      .. ....+.+..... ....|+.+..+..+|.++...|++++|.++|+++++..|++.. +..++.++.+.|+.++|..+
T Consensus       306 ~~-~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~  383 (398)
T PRK10747        306 KT-NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAM  383 (398)
T ss_pred             cC-CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence            01 122223333332 3455666667777777777777777777777777777766543 44577777777777777777


Q ss_pred             HHHHHhc
Q psy3701         307 FHKTMAL  313 (342)
Q Consensus       307 ~~~al~~  313 (342)
                      |++++.+
T Consensus       384 ~~~~l~~  390 (398)
T PRK10747        384 RRDGLML  390 (398)
T ss_pred             HHHHHhh
Confidence            7777654

>KOG1129|consensus

Probab=99.88  E-value=3.7e-21  Score=149.07  Aligned_cols=212  Identities=16%  Similarity=0.158  Sum_probs=199.1

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC
Q psy3701          82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN  161 (342)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  161 (342)
                      ..+|.||+++|-+.+|.+.++.+++..| .++.+..++.+|.+..+...|+..+.+.++..|.+......++.++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            5689999999999999999999999887 488999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhc
Q psy3701         162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG  241 (342)
Q Consensus       162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (342)
                      .++|.++|+.+++..|.+.++.-.+|.-|+..++.+-|+.+|++.++..-.+                            
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s----------------------------  357 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS----------------------------  357 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC----------------------------
Confidence            9999999999999999999999999999999999999999999999998888                            


Q ss_pred             hhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP---MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                              ++.+.++|.|.+..++++-++..|++++....   .-.++|+++|.+....|++..|.++|+-++..+|++.
T Consensus       358 --------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~  429 (478)
T KOG1129|consen  358 --------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG  429 (478)
T ss_pred             --------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence                    48999999999999999999999999998754   2358999999999999999999999999999999999


Q ss_pred             hHHhHHHHHHHH
Q psy3701         319 FATTMLSYVIEQ  330 (342)
Q Consensus       319 ~~~~~l~~~~~~  330 (342)
                      +++.+|+.+-.+
T Consensus       430 ealnNLavL~~r  441 (478)
T KOG1129|consen  430 EALNNLAVLAAR  441 (478)
T ss_pred             HHHHhHHHHHhh
Confidence            999999865443

>KOG0550|consensus

Probab=99.87  E-value=1.4e-20  Score=150.10  Aligned_cols=255  Identities=21%  Similarity=0.197  Sum_probs=193.7

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      .++-....|..+....+|..|+..|..+            ++..|+++..|.+.+.++...+++++|....++.++++|.
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~A------------i~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~  115 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFA------------IDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG  115 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHH------------HHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC
Confidence            3445556888888888999999988886            6999999999999999999999999999999999888887


Q ss_pred             cHHHHHHhhhHHHh----------------------------------------------------hccHHHHHHHHHHH
Q psy3701         111 FLPAWLMYGHSFAV----------------------------------------------------ENEHDQAMAAYFNA  138 (342)
Q Consensus       111 ~~~~~~~la~~~~~----------------------------------------------------~g~~~~A~~~~~~a  138 (342)
                      .+..+...+.++..                                                    .|++++|...-...
T Consensus       116 ~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i  195 (486)
T KOG0550|consen  116 FSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI  195 (486)
T ss_pred             ccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence            66555444444444                                                    44455555555555


Q ss_pred             hccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChH------------HHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701         139 FNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF------------VIHEMGVIAYQNHNYTVAENCFMEA  206 (342)
Q Consensus       139 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~A~~~~~~a  206 (342)
                      +++++.+..+++..|.++...++.+.|+..|++++.++|+...            .|..-|.-.++.|++.+|.+.|..+
T Consensus       196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            5556666666666666666666666666666666666665432            2445566666666666666666666


Q ss_pred             HHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH
Q psy3701         207 LSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST  286 (342)
Q Consensus       207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  286 (342)
                      +.++|++.                                ...+.+|.+++.+..++|+..+|+..++.+++++|....+
T Consensus       276 l~idP~n~--------------------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika  323 (486)
T KOG0550|consen  276 LNIDPSNK--------------------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA  323 (486)
T ss_pred             hcCCcccc--------------------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence            66666652                                3346789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         287 FCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       287 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      +...|.|+..+++|++|++.|+++++...+ ......+..+-..
T Consensus       324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~a  366 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLA  366 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHH
Confidence            999999999999999999999999998766 5555555544433

>KOG1840|consensus

Probab=99.87  E-value=1.4e-19  Score=153.83  Aligned_cols=248  Identities=17%  Similarity=0.123  Sum_probs=199.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc---
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELV-DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL---  107 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---  107 (342)
                      ..+...++..|..+|+|++|+..++.++..     ..+.. ...|.-......+|.+|...+++.+|+..|++|+.+   
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-----l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI-----LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            444555999999999999999999998622     11100 124555556667999999999999999999999975   


Q ss_pred             -----CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC--------CCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701         108 -----DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK--------GCHLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       108 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                           +|....++.+||.+|...|++++|..++++++++..        .-...+..++.++..++++++|+.+++++++
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                 344567899999999999999999999999998742        2334566788999999999999999999987


Q ss_pred             hC-----CC---ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701         175 IA-----HE---DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA  246 (342)
Q Consensus       175 ~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (342)
                      +.     ++   -+....++|.+|..+|++++|.+.+++++++.....                            ....
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~----------------------------~~~~  405 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL----------------------------GKKD  405 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc----------------------------cCcC
Confidence            53     22   345788999999999999999999999999876552                            1112


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      ......+..+|..+.+.+++.+|...|.++..+.       |+....+.+|+.+|..+|++++|+++.++++.
T Consensus       406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            3335678889999999999999999999987652       44457789999999999999999999999884

>KOG0495|consensus

Probab=99.87  E-value=9.8e-19  Score=147.22  Aligned_cols=285  Identities=15%  Similarity=0.080  Sum_probs=230.8

Q ss_pred             HhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChH
Q psy3701          38 KGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSD   95 (342)
Q Consensus        38 ~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~   95 (342)
                      .+..+...|+...|..++.++.                      ++.|..++.++....| ...+|+.-+.....+++.+
T Consensus       590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVE  668 (913)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHH
Confidence            4445555566666666666554                      2444444444444444 4677888888888889999


Q ss_pred             HHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh
Q psy3701          96 PARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI  175 (342)
Q Consensus        96 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  175 (342)
                      +|+++++++++..|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+-.+.|+...|...++++...
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk  748 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK  748 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701         176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN  255 (342)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (342)
                      +|++...|.....+-.+.|+.+.|.....++++..|.++     ..|............ .....+........+.++..
T Consensus       749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg-----~LWaEaI~le~~~~r-kTks~DALkkce~dphVlla  822 (913)
T KOG0495|consen  749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG-----LLWAEAIWLEPRPQR-KTKSIDALKKCEHDPHVLLA  822 (913)
T ss_pred             CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc-----hhHHHHHHhccCccc-chHHHHHHHhccCCchhHHH
Confidence            999999999999999999999999999999999999984     444433332221111 11112223344555678899


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      +|..+....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.+.++....|.+...|...+.-..
T Consensus       823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~  896 (913)
T KOG0495|consen  823 IAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIK  896 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988887765544

>KOG1125|consensus

Probab=99.86  E-value=1.8e-20  Score=155.65  Aligned_cols=216  Identities=15%  Similarity=0.143  Sum_probs=160.3

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC
Q psy3701          82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN  161 (342)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  161 (342)
                      +..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            55677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHH-------HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         162 ARLASKFFDLALSIAHEDPFVIHE-------MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       162 ~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      -.+|+.++.+-+...|.....-..       ...-......+..-.+.|-.+....|.                      
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~----------------------  426 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT----------------------  426 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC----------------------
Confidence            777777777777666543211100       000000000111222333333333331                      


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                                  ...+++...||.+|.-.|+|++|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.
T Consensus       427 ------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq  494 (579)
T KOG1125|consen  427 ------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ  494 (579)
T ss_pred             ------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence                        12368999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHhHHHHHHHHh
Q psy3701         315 RDDSFATTMLSYVIEQL  331 (342)
Q Consensus       315 p~~~~~~~~l~~~~~~~  331 (342)
                      |+...++++|+.++..+
T Consensus       495 P~yVR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  495 PGYVRVRYNLGISCMNL  511 (579)
T ss_pred             CCeeeeehhhhhhhhhh
Confidence            99999999998776554

>KOG2076|consensus

Probab=99.86  E-value=5.2e-19  Score=153.81  Aligned_cols=276  Identities=15%  Similarity=0.151  Sum_probs=204.4

Q ss_pred             hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      +.+.....|+.+|.+|..+|+.+++....-.+            -..+|.+.+.|..++....++|++++|+-+|.+|++
T Consensus       168 qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA------------AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~  235 (895)
T KOG2076|consen  168 QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA------------AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ  235 (895)
T ss_pred             hCccchhhHHHHHHHHHHcccHHHHHHHHHHH------------HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            44556788999999999999999999888875            478999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchH-----HHHHHHHHhhhCCHHHHHHHHHHHHhhCC--CC
Q psy3701         107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLP-----ALYVGLECGLTNNARLASKFFDLALSIAH--ED  179 (342)
Q Consensus       107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~  179 (342)
                      .+|.+....+..+.++.++|+...|...|.+++...|....-     -...+..+...++-+.|++.++.++....  ..
T Consensus       236 ~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~  315 (895)
T KOG2076|consen  236 ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS  315 (895)
T ss_pred             cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc
Confidence            999999999999999999999999999999999999942211     12245666667777888888888776221  12


Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhh--hhc--------------------C-----------------------
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKV--KQL--------------------G-----------------------  214 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~--------------------~-----------------------  214 (342)
                      ..-+..++.++.....++.|...........  +++                    .                       
T Consensus       316 ~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~  395 (895)
T KOG2076|consen  316 LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKEREL  395 (895)
T ss_pred             ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccch
Confidence            2334455555555555555554443332200  000                    0                       


Q ss_pred             ----------ccccccchhhHHHHhhhh------HHHHHHHhchhccCCCC--hHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701         215 ----------GEIIADKWEPLLNNLGHK------AEDKVKQLGGEIIADKW--EPLLNNLGHVNRKLKKYEEALEFHKQA  276 (342)
Q Consensus       215 ----------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (342)
                                ...+...-...+..+.+.      ..+++..+......+.+  ..+|..+|.||..+|.+++|+.+|+++
T Consensus       396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv  475 (895)
T KOG2076|consen  396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV  475 (895)
T ss_pred             HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence                      222222222223322221      22444444443333322  559999999999999999999999999


Q ss_pred             HhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         277 LVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       277 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      +...|++.++...++.++.++|++++|.+.+++...-+
T Consensus       476 l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  476 LILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence            99999999999999999999999999999999877333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.9e-18  Score=132.84  Aligned_cols=234  Identities=15%  Similarity=0.099  Sum_probs=202.7

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc----
Q psy3701          36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF----  111 (342)
Q Consensus        36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----  111 (342)
                      |..|.-+.-..+.++|++.|..            +++.+|...++...+|..+.+.|..+.|+..-+..+. .|+.    
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e------------~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~q  105 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLE------------MLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQ  105 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHH------------HHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHH
Confidence            4566666666777777777777            5789999999999999999999999999998776655 3443    


Q ss_pred             -HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh-----HHHHH
Q psy3701         112 -LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP-----FVIHE  185 (342)
Q Consensus       112 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~  185 (342)
                       .-+...+|.-|+..|=+|.|...|....+...-...+...+..+|....+|++|++.-++..++.+...     ..+..
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE  185 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE  185 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence             346788999999999999999999999886666677888899999999999999999999999887753     45778


Q ss_pred             HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701         186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      ++..+....+.+.|+..+.++++.+|+.                                    +.+-..+|.+....|+
T Consensus       186 LAq~~~~~~~~d~A~~~l~kAlqa~~~c------------------------------------vRAsi~lG~v~~~~g~  229 (389)
T COG2956         186 LAQQALASSDVDRARELLKKALQADKKC------------------------------------VRASIILGRVELAKGD  229 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhCccc------------------------------------eehhhhhhHHHHhccc
Confidence            8888889999999999999999999999                                    5788899999999999


Q ss_pred             HHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         266 YEEALEFHKQALVVAPMKA-STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      |+.|++.++.+++.+|+.. .+.-.+..+|.+.|+.++....+.++.+..++..
T Consensus       230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            9999999999999999864 6788899999999999999999999999887654

>KOG0548|consensus

Probab=99.85  E-value=1.3e-18  Score=143.57  Aligned_cols=282  Identities=15%  Similarity=0.090  Sum_probs=200.0

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHH
Q psy3701          37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWL  116 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  116 (342)
                      .+|+..+..|+|+.|+.+|..+            +..+|.+...+.+...+|..+|+|++|++.-.+.++++|+.+..|.
T Consensus         7 ~kgnaa~s~~d~~~ai~~~t~a------------i~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~   74 (539)
T KOG0548|consen    7 EKGNAAFSSGDFETAIRLFTEA------------IMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYS   74 (539)
T ss_pred             HHHHhhcccccHHHHHHHHHHH------------HccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHH
Confidence            5788999999999999999997            5889999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh-----------------C----CH---HHHHHHHHHH
Q psy3701         117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT-----------------N----NA---RLASKFFDLA  172 (342)
Q Consensus       117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-----------------~----~~---~~A~~~~~~~  172 (342)
                      .+|..+.-.|+|++|+..|.+.++.+|++......++.++...                 +    ++   +.+.....+.
T Consensus        75 r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~  154 (539)
T KOG0548|consen   75 RKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEI  154 (539)
T ss_pred             HhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence            9999999999999999999999999988776666555554111                 0    00   0111111111


Q ss_pred             HhhCCCC--------------------------------------------------------------hHHHHHHHHHH
Q psy3701         173 LSIAHED--------------------------------------------------------------PFVIHEMGVIA  190 (342)
Q Consensus       173 ~~~~~~~--------------------------------------------------------------~~~~~~l~~~~  190 (342)
                      +..+|.+                                                              ..-...+|...
T Consensus       155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa  234 (539)
T KOG0548|consen  155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA  234 (539)
T ss_pred             hhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence            1111100                                                              00134556666


Q ss_pred             HHhcChhHHHHHHHHHHHhhhhcCccc--------------------------cccchh------hHHHHhhh-------
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQLGGEI--------------------------IADKWE------PLLNNLGH-------  231 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~~~~~--------------------------~~~~~~------~~~~~~~~-------  231 (342)
                      +...++..|++.|.+++.++ .+.+-.                          ....|.      .....+|.       
T Consensus       235 ykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~  313 (539)
T KOG0548|consen  235 YKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED  313 (539)
T ss_pred             HHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence            66666666666666666665 221000                          000000      01111110       


Q ss_pred             ------hHH-------------------HHHHHh-chhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701         232 ------KAE-------------------DKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS  285 (342)
Q Consensus       232 ------~~~-------------------~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  285 (342)
                            ++.                   +..... ......|..+.--..-|+.++..|+|..|+..|.+++..+|+++.
T Consensus       314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~  393 (539)
T KOG0548|consen  314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR  393 (539)
T ss_pred             HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence                  000                   111111 112244555666667799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      .+.+.|.||.++|.+..|+...+.+++++|++..++..-+.++..+
T Consensus       394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m  439 (539)
T KOG0548|consen  394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM  439 (539)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877776544

>TIGR00540 hemY_coli hemY protein

Probab=99.85  E-value=1.2e-18  Score=149.24  Aligned_cols=209  Identities=11%  Similarity=0.105  Sum_probs=154.8

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYL   90 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~   90 (342)
                      .+...|++....|++++|...+.++.                       +++|...++.+.+..|+++.++..++.++..
T Consensus       120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~  199 (409)
T TIGR00540       120 NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR  199 (409)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34467888999999999999888753                       3666777888888888888888888888888


Q ss_pred             hCChHHHHHHHHHHhhcC--------------------------------------C----CcHHHHHHhhhHHHhhccH
Q psy3701          91 IGRSDPARRFLGKATSLD--------------------------------------K----LFLPAWLMYGHSFAVENEH  128 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~--------------------------------------~----~~~~~~~~la~~~~~~g~~  128 (342)
                      .|++++|.+.+.+..+..                                      |    +++..+..++..+...|++
T Consensus       200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~  279 (409)
T TIGR00540       200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDH  279 (409)
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCCh
Confidence            888888888887766431                                      1    1334455666677777777


Q ss_pred             HHHHHHHHHHhccCCCCchHH--HHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHhcChhHHHHHHH
Q psy3701         129 DQAMAAYFNAFNLFKGCHLPA--LYVGLECGLTNNARLASKFFDLALSIAHEDP--FVIHEMGVIAYQNHNYTVAENCFM  204 (342)
Q Consensus       129 ~~A~~~~~~al~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~  204 (342)
                      ++|++.++++++..|++....  ..........++.+.+++.++++++..|+++  .....+|.+++..|++++|.++|+
T Consensus       280 ~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le  359 (409)
T TIGR00540       280 DSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK  359 (409)
T ss_pred             HHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            777777777777777765432  2223333445677777777777777777777  777777888888888888888877


Q ss_pred             --HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701         205 --EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV  279 (342)
Q Consensus       205 --~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  279 (342)
                        ++++..|++                                     ..+..+|.++.+.|+.++|.+++++++..
T Consensus       360 ~a~a~~~~p~~-------------------------------------~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       360 NVAACKEQLDA-------------------------------------NDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HhHHhhcCCCH-------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              466666665                                     45669999999999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0495|consensus

Probab=99.85  E-value=1.2e-17  Score=140.74  Aligned_cols=295  Identities=16%  Similarity=0.096  Sum_probs=245.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYY   88 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~   88 (342)
                      ....|..-++.+.+.+.++-|...|..++                      .+....++++++..-|.....|...+.-+
T Consensus       515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~  594 (913)
T KOG0495|consen  515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK  594 (913)
T ss_pred             hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence            34456667778888888888888887776                      26667888899999999999999999999


Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF  168 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  168 (342)
                      +..|+...|...+.++++.+|++.+.|+.-..+.....+++.|..++.++....|+ ..+|+.-+.....+++.++|++.
T Consensus       595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987776 67788888888899999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH---HHhhhhHHHHHHHhch-hc
Q psy3701         169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL---NNLGHKAEDKVKQLGG-EI  244 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~  244 (342)
                      ++++++..|+.+..|..+|.++..+++.+.|...|...++..|...     ..|..+.   ...+ ....+...++. ..
T Consensus       674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-----pLWllLakleEk~~-~~~rAR~ildrarl  747 (913)
T KOG0495|consen  674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-----PLWLLLAKLEEKDG-QLVRARSILDRARL  747 (913)
T ss_pred             HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-----hHHHHHHHHHHHhc-chhhHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999884     2222111   1111 11122233333 45


Q ss_pred             cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------------------------------hHHHHHHHHHH
Q psy3701         245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------------------------------ASTFCCIGYIQ  294 (342)
Q Consensus       245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~~~~~l~~~~  294 (342)
                      .+|.....|.....+-.+.|+.+.|.....+|++..|++                              +.++...|..+
T Consensus       748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf  827 (913)
T KOG0495|consen  748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF  827 (913)
T ss_pred             cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence            678888899999999999999999999999999877764                              34557788999


Q ss_pred             HHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         295 ALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       295 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ....++++|+++|.+++..+|++.++|..+-....+.+
T Consensus       828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG  865 (913)
T KOG0495|consen  828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG  865 (913)
T ss_pred             HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence            99999999999999999999999999887765554444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.85  E-value=3e-18  Score=146.07  Aligned_cols=204  Identities=15%  Similarity=0.123  Sum_probs=145.2

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC
Q psy3701          37 LKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR   93 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~   93 (342)
                      ..+......|+++.|...+.++.                       +++|...++++.+.+|+++.++..++.+|...|+
T Consensus       123 laA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd  202 (398)
T PRK10747        123 LAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA  202 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence            34666688999999999888864                       2555666666666677777777777777777777


Q ss_pred             hHHHHHHHHHHhhcC------------------------------------------CCcHHHHHHhhhHHHhhccHHHH
Q psy3701          94 SDPARRFLGKATSLD------------------------------------------KLFLPAWLMYGHSFAVENEHDQA  131 (342)
Q Consensus        94 ~~~A~~~~~~a~~~~------------------------------------------~~~~~~~~~la~~~~~~g~~~~A  131 (342)
                      +++|+..+.+..+..                                          |+++.+...++..+...|+.++|
T Consensus       203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A  282 (398)
T PRK10747        203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTA  282 (398)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence            777775555544221                                          12333445556666666777777


Q ss_pred             HHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701         132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVK  211 (342)
Q Consensus       132 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  211 (342)
                      ...++++++..| ++......+.  ...++.+++++.+++.++..|+++..+..+|.++...+++++|...|+++++..|
T Consensus       283 ~~~L~~~l~~~~-~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P  359 (398)
T PRK10747        283 QQIILDGLKRQY-DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP  359 (398)
T ss_pred             HHHHHHHHhcCC-CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            777776666333 3322222222  2337777777777777777888888888888888888888888888888888888


Q ss_pred             hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701         212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA  280 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  280 (342)
                      ++                                     ..+..++.++...|+.++|..+|++++...
T Consensus       360 ~~-------------------------------------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        360 DA-------------------------------------YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             CH-------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            77                                     467789999999999999999999998754

>KOG0624|consensus

Probab=99.84  E-value=8.2e-19  Score=137.05  Aligned_cols=215  Identities=13%  Similarity=0.039  Sum_probs=197.2

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY  151 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  151 (342)
                      ..+|.+.+-.+.+|.-++..|++..|+..|..|++.+|++..+++..|.+|..+|+..-|+..+.+++++.|+...+...
T Consensus        32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence            34677888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCCChHH---------------HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHEDPFV---------------IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE  216 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  216 (342)
                      .|.++.++|.+++|..-|+.++..+|++...               +......+...|++..|+......+++.|-+   
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd---  188 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD---  188 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch---
Confidence            9999999999999999999999999965322               2233444566789999999999999999988   


Q ss_pred             ccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701         217 IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL  296 (342)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  296 (342)
                                                       +..+...+.||...|+...|+.-++.+-++..++.+.++.++.+++.
T Consensus       189 ---------------------------------a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~  235 (504)
T KOG0624|consen  189 ---------------------------------ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT  235 (504)
T ss_pred             ---------------------------------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence                                             68999999999999999999999999999999999999999999999


Q ss_pred             hCChHHHHHHHHHHHhcccCchhHHh
Q psy3701         297 TGDLDSAVNYFHKTMALKRDDSFATT  322 (342)
Q Consensus       297 ~g~~~~A~~~~~~al~~~p~~~~~~~  322 (342)
                      .|+.+.++...+.++.++|++...+.
T Consensus       236 vgd~~~sL~~iRECLKldpdHK~Cf~  261 (504)
T KOG0624|consen  236 VGDAENSLKEIRECLKLDPDHKLCFP  261 (504)
T ss_pred             hhhHHHHHHHHHHHHccCcchhhHHH
Confidence            99999999999999999999875443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.6e-17  Score=128.81  Aligned_cols=249  Identities=14%  Similarity=0.097  Sum_probs=213.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS-----AIAWYAVGCYYYLIGRSDPARRFLGKA  104 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a  104 (342)
                      ...+..+.+|+.+...|..++|+.+.+.-             -..|+-     ..+...+|.-|...|-++.|...|...
T Consensus        67 ~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L-------------~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L  133 (389)
T COG2956          67 ETFEAHLTLGNLFRSRGEVDRAIRIHQTL-------------LESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQL  133 (389)
T ss_pred             hhhHHHHHHHHHHHhcchHHHHHHHHHHH-------------hcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            34566778999999999999999999883             445543     457889999999999999999999999


Q ss_pred             hhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC
Q psy3701         105 TSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-----LPALYVGLECGLTNNARLASKFFDLALSIAHED  179 (342)
Q Consensus       105 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (342)
                      .+...--..+...+..+|....++++|++.-++..++.+...     ..+..++..+....+.+.|...+.++++.+|++
T Consensus       134 ~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c  213 (389)
T COG2956         134 VDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC  213 (389)
T ss_pred             hcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc
Confidence            887666678999999999999999999999999999988743     234457888888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      ..+-..+|.+....|+|+.|++.++.+++.+|...                                   +.+...+..+
T Consensus       214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl-----------------------------------~evl~~L~~~  258 (389)
T COG2956         214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEYL-----------------------------------SEVLEMLYEC  258 (389)
T ss_pred             eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH-----------------------------------HHHHHHHHHH
Confidence            99999999999999999999999999999999884                                   6788899999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      |...|+.++.+.++.++.+..++. .+-..++..-....-.+.|..+..+-+...|+-...+..+..-
T Consensus       259 Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~  325 (389)
T COG2956         259 YAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH  325 (389)
T ss_pred             HHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence            999999999999999999988754 4455577777777778889999888888888766555554433

>KOG4162|consensus

Probab=99.84  E-value=1.4e-17  Score=142.88  Aligned_cols=257  Identities=15%  Similarity=0.063  Sum_probs=170.0

Q ss_pred             cHHHHHHHHHHHHHhC-----------ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CC
Q psy3701          77 SAIAWYAVGCYYYLIG-----------RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KG  144 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~  144 (342)
                      .+.++..+|.+|-.+-           ...++++.++++++.+|+|+.+.+.++.-|..+++.+.|....+++++.+ .+
T Consensus       432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~  511 (799)
T KOG4162|consen  432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD  511 (799)
T ss_pred             hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc
Confidence            3556666666664321           24567777777777777777777777777777777777777777777773 34


Q ss_pred             CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC----------
Q psy3701         145 CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG----------  214 (342)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------  214 (342)
                      ++.+|..++.++...+++.+|+.+.+.++.-.|+|.........+-...++.++|+......+.......          
T Consensus       512 ~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~  591 (799)
T KOG4162|consen  512 SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK  591 (799)
T ss_pred             cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh
Confidence            5666777777777777777777777777777766555444444444444555555544444433322000          


Q ss_pred             ------------------------------------c-----------cccccchh---------hHHHHhhhhHHHHH-
Q psy3701         215 ------------------------------------G-----------EIIADKWE---------PLLNNLGHKAEDKV-  237 (342)
Q Consensus       215 ------------------------------------~-----------~~~~~~~~---------~~~~~~~~~~~~~~-  237 (342)
                                                          +           ......|.         ...+.......+.. 
T Consensus       592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~  671 (799)
T KOG4162|consen  592 LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS  671 (799)
T ss_pred             hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence                                                0           00011111         11111111222222 


Q ss_pred             HHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH--HHHHHHhccc
Q psy3701         238 KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN--YFHKTMALKR  315 (342)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p  315 (342)
                      -........+..+..|+..|.++...|+..+|.+.|..++.++|+++.+...+|.++.+.|+..-|..  .+..+++++|
T Consensus       672 CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp  751 (799)
T KOG4162|consen  672 CLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP  751 (799)
T ss_pred             HHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence            22222345566678889999999999999999999999999999999999999999999998888777  8999999999


Q ss_pred             CchhHHhHHHHHHHHhhh
Q psy3701         316 DDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       316 ~~~~~~~~l~~~~~~~~~  333 (342)
                      .++++|+.||.+++..++
T Consensus       752 ~n~eaW~~LG~v~k~~Gd  769 (799)
T KOG4162|consen  752 LNHEAWYYLGEVFKKLGD  769 (799)
T ss_pred             CCHHHHHHHHHHHHHccc
Confidence            999999999998887764

>KOG1840|consensus

Probab=99.83  E-value=2.3e-18  Score=146.38  Aligned_cols=233  Identities=15%  Similarity=0.127  Sum_probs=190.5

Q ss_pred             cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--
Q psy3701          73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--  142 (342)
Q Consensus        73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  142 (342)
                      .+|.-..+...+|..|...|++++|+..++++++.        .|.-......+|.+|..++++++|+..|++++.+.  
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45666778888999999999999999999999998        45545556679999999999999999999999873  


Q ss_pred             ------CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701         143 ------KGCHLPALYVGLECGLTNNARLASKFFDLALSIAH--------EDPFVIHEMGVIAYQNHNYTVAENCFMEALS  208 (342)
Q Consensus       143 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  208 (342)
                            |....++.+++..|...|++++|..++++++++..        .-...+..++.++..++++++|+.+++++++
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                  44456778899999999999999999999987642        2234578889999999999999999999998


Q ss_pred             hhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--------
Q psy3701         209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--------  280 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------  280 (342)
                      +..+.+                            ....+..+..+.++|.+|..+|++++|.+++++++++.        
T Consensus       354 i~~~~~----------------------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  354 IYLDAP----------------------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHhhc----------------------------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence            866432                            11233446789999999999999999999999999874        


Q ss_pred             CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc----ccCc---hhHHhHHHHHHHHhhh
Q psy3701         281 PMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL----KRDD---SFATTMLSYVIEQLIE  333 (342)
Q Consensus       281 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~---~~~~~~l~~~~~~~~~  333 (342)
                      +.....+..+|..+.+.+++.+|...|.++..+    .|++   ...+.+|+.+|..++.
T Consensus       406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~  465 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN  465 (508)
T ss_pred             hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence            223456788999999999999999999988765    3444   4567778888776653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.83  E-value=5.6e-18  Score=134.86  Aligned_cols=190  Identities=15%  Similarity=-0.010  Sum_probs=148.3

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH---HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch---
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL---PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL---  147 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---  147 (342)
                      ++..+..++.+|..++..|++++|+..+++++..+|+++   .+++.+|.++...|++++|+..++++++..|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            455688899999999999999999999999999888765   57788999999999999999999999999888776   


Q ss_pred             HHHHHHHHHhhh--------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccc
Q psy3701         148 PALYVGLECGLT--------NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA  219 (342)
Q Consensus       148 ~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  219 (342)
                      +++.+|.++...        |++++|++.+++++..+|++...+..+..+....                 ...      
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~-----------------~~~------  165 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR-----------------NRL------  165 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-----------------HHH------
Confidence            577778887765        6677777777777777777655443222111100                 000      


Q ss_pred             cchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHH
Q psy3701         220 DKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQAL  296 (342)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~  296 (342)
                                                    ......+|..+...|++.+|+..+++++...|+.   +.+++.+|.++..
T Consensus       166 ------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       166 ------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK  215 (235)
T ss_pred             ------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence                                          1234568889999999999999999999997764   5799999999999


Q ss_pred             hCChHHHHHHHHHHHhcccC
Q psy3701         297 TGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       297 ~g~~~~A~~~~~~al~~~p~  316 (342)
                      +|++++|..+++......|+
T Consensus       216 lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       216 LGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             cCCHHHHHHHHHHHHhhCCC
Confidence            99999999998888776663

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2003|consensus

Probab=99.83  E-value=2.7e-18  Score=139.13  Aligned_cols=246  Identities=15%  Similarity=0.066  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhh--ccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFAVE--NEHDQAMAAYFNAFNLFKGCHLPALYVGL  154 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l~~  154 (342)
                      .+.-.+.+..+.+.|+++.|++.++-.-..+... ..+-.++..+++.+  .++.+|..+...++.++..++.+..+.|.
T Consensus       419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn  498 (840)
T KOG2003|consen  419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGN  498 (840)
T ss_pred             hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence            4455677888999999999999887655554433 23445565555553  47889999999999999999999999999


Q ss_pred             HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      +-+..|++++|.+.|++++..+.....+++++|..+..+|+.++|+.+|-+.-.+-.++.         .++..+...++
T Consensus       499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~---------evl~qianiye  569 (840)
T KOG2003|consen  499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA---------EVLVQIANIYE  569 (840)
T ss_pred             eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998766655552         22222222111


Q ss_pred             ------HHHHHh-chhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701         235 ------DKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF  307 (342)
Q Consensus       235 ------~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  307 (342)
                            .+++.+ .....-|..+.++..+|.+|-+.|+-.+|..++-...+..|.+.++.-.+|..|....-+++|+.+|
T Consensus       570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~  649 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF  649 (840)
T ss_pred             HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence                  222222 2234556667788888888888888888888888888888888888888888888888888889999


Q ss_pred             HHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         308 HKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       308 ~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      +++--+.|+...-..+++.|+.+.+
T Consensus       650 ekaaliqp~~~kwqlmiasc~rrsg  674 (840)
T KOG2003|consen  650 EKAALIQPNQSKWQLMIASCFRRSG  674 (840)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHhcc
Confidence            9888888887776677777766543

>KOG1156|consensus

Probab=99.82  E-value=5.3e-18  Score=142.68  Aligned_cols=255  Identities=14%  Similarity=0.080  Sum_probs=197.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh
Q psy3701          46 ENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE  125 (342)
Q Consensus        46 ~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  125 (342)
                      +-|.+++++|+...+.+.+..++.+++..|++++++...|..+...|+-++|..+...++..++...-.|..+|.++...
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            45778888999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701         126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME  205 (342)
Q Consensus       126 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  205 (342)
                      .+|++|+++|+.|+.+.|++...+..++....++++++.....-.+.++..|.....|...+..+...|++..|....+.
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e  168 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE  168 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701         206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS  285 (342)
Q Consensus       206 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  285 (342)
                      ..+.....+.   ....                         ....+......+....|.+++|++.+.+--..--+...
T Consensus       169 f~~t~~~~~s---~~~~-------------------------e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla  220 (700)
T KOG1156|consen  169 FEKTQNTSPS---KEDY-------------------------EHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLA  220 (700)
T ss_pred             HHHhhccCCC---HHHH-------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHH
Confidence            8776532210   0000                         00123333344444555555555544432222222223


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      .....+.++.++|+.++|...|...+..+|++..-+..+..++
T Consensus       221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l  263 (700)
T KOG1156|consen  221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL  263 (700)
T ss_pred             HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence            3344555566666666666666666666666655554444444

>KOG1174|consensus

Probab=99.81  E-value=6.4e-17  Score=129.49  Aligned_cols=254  Identities=9%  Similarity=-0.040  Sum_probs=178.5

Q ss_pred             HhcCCCcHHHHHH---HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch
Q psy3701          71 VDLYPDSAIAWYA---VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL  147 (342)
Q Consensus        71 ~~~~p~~~~~~~~---l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  147 (342)
                      +...|..+..|..   .+.++-....+..+..++-.-....|++......+|.++...|++++|+-.|+++..++|....
T Consensus       188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~  267 (564)
T KOG1174|consen  188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE  267 (564)
T ss_pred             eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh
Confidence            3556665554433   3444444445555666677777889999999999999999999999999999999999887543


Q ss_pred             HHHH----------------------------------HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701         148 PALY----------------------------------VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN  193 (342)
Q Consensus       148 ~~~~----------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (342)
                      +.-.                                  -+...+..+++..|+.+-+++++.+|.+...+...|.++...
T Consensus       268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~  347 (564)
T KOG1174|consen  268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL  347 (564)
T ss_pred             hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence            3322                                  233455567888999999999999999999999999999999


Q ss_pred             cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHH-HHH-HHhhhHHHHH
Q psy3701         194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLG-HVN-RKLKKYEEAL  270 (342)
Q Consensus       194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~  270 (342)
                      |+.++|+-.|+.+..+.|..-...  ......+-..+... ++...... ....+..+.++..+| .++ ..-.--++|.
T Consensus       348 ~R~~~A~IaFR~Aq~Lap~rL~~Y--~GL~hsYLA~~~~k-EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK  424 (564)
T KOG1174|consen  348 ERHTQAVIAFRTAQMLAPYRLEIY--RGLFHSYLAQKRFK-EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK  424 (564)
T ss_pred             cchHHHHHHHHHHHhcchhhHHHH--HHHHHHHHhhchHH-HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence            999999999999999988762000  00011111111111 11111111 112233344555554 222 2333457899


Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         271 EFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       271 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      +++++++.+.|....+-..++.++...|++++++..+++.+...||+. .+..|+.++
T Consensus       425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~  481 (564)
T KOG1174|consen  425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIM  481 (564)
T ss_pred             HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999765 344444444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.80  E-value=4.3e-18  Score=123.39  Aligned_cols=127  Identities=17%  Similarity=0.151  Sum_probs=104.9

Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701         166 SKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII  245 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
                      ...++++++.+|++   +..+|.++...|++++|+..|++++..+|.+                                
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--------------------------------   57 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS--------------------------------   57 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--------------------------------
Confidence            35677788877764   5567888888888888888888888888887                                


Q ss_pred             CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                          ..++..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++++.|+++..+...+
T Consensus        58 ----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         58 ----WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence                5788888888888888888888888888888888888888888888888888888888888888888888888877


Q ss_pred             HHHHHh
Q psy3701         326 YVIEQL  331 (342)
Q Consensus       326 ~~~~~~  331 (342)
                      .+...+
T Consensus       134 ~~~~~l  139 (144)
T PRK15359        134 NAQIMV  139 (144)
T ss_pred             HHHHHH
Confidence            776554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.79  E-value=5e-16  Score=141.19  Aligned_cols=272  Identities=7%  Similarity=-0.148  Sum_probs=206.1

Q ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q psy3701          43 EALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF  122 (342)
Q Consensus        43 ~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  122 (342)
                      .-...|++|+..++++.+..|+..++++++.+|.++.....+..++...|+.++|+.++++++.-.|........+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            34577999999999999999999999999999999655448888889999999999999999944444455555558899


Q ss_pred             HhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHH
Q psy3701         123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENC  202 (342)
Q Consensus       123 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  202 (342)
                      ...|++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|+..
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999986554 5666677667888789999


Q ss_pred             HHHHHHhhhhcCccccccchh-----------------------------h---HHHHh--h-----------hhHHHHH
Q psy3701         203 FMEALSKVKQLGGEIIADKWE-----------------------------P---LLNNL--G-----------HKAEDKV  237 (342)
Q Consensus       203 ~~~al~~~~~~~~~~~~~~~~-----------------------------~---~~~~~--~-----------~~~~~~~  237 (342)
                      ++++++.+|++..........                             .   +...+  +           ...+.++
T Consensus       192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al  271 (822)
T PRK14574        192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL  271 (822)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence            999999999886111000000                             0   00000  0           0111222


Q ss_pred             HHhchh----ccCCC----ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701         238 KQLGGE----IIADK----WEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       238 ~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                      ..+...    ...|.    ...+....-.++...|++.+++..|+...... |--..+....|..|...+++++|...|+
T Consensus       272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~  351 (822)
T PRK14574        272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS  351 (822)
T ss_pred             HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            222221    12222    23344455566788899999999999876544 2234577789999999999999999999


Q ss_pred             HHHhccc
Q psy3701         309 KTMALKR  315 (342)
Q Consensus       309 ~al~~~p  315 (342)
                      +++.-.|
T Consensus       352 ~~~~~~~  358 (822)
T PRK14574        352 SLYYSDG  358 (822)
T ss_pred             HHhhccc
Confidence            9988653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.79  E-value=9.8e-18  Score=121.53  Aligned_cols=125  Identities=16%  Similarity=0.119  Sum_probs=115.6

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC
Q psy3701          66 LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC  145 (342)
Q Consensus        66 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  145 (342)
                      +++++++.+|++   +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|++
T Consensus        15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            344457888875   66789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701         146 HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN  193 (342)
Q Consensus       146 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (342)
                      +.+++.+|.++...|++++|+..|++++...|+++..+..+|.+....
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888876654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.79  E-value=2.2e-17  Score=131.42  Aligned_cols=173  Identities=13%  Similarity=0.049  Sum_probs=151.8

Q ss_pred             hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701          27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA---IAWYAVGCYYYLIGRSDPARRFLGK  103 (342)
Q Consensus        27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~  103 (342)
                      ........++.+|..+...|++++|+..|++.            +..+|+++   .+++.+|.++...|++++|+..+++
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~------------~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~   95 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEAL------------ESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR   95 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34556778889999999999999999999995            57788765   6889999999999999999999999


Q ss_pred             HhhcCCCcHH---HHHHhhhHHHhh--------ccHHHHHHHHHHHhccCCCCchHH-----------------HHHHHH
Q psy3701         104 ATSLDKLFLP---AWLMYGHSFAVE--------NEHDQAMAAYFNAFNLFKGCHLPA-----------------LYVGLE  155 (342)
Q Consensus       104 a~~~~~~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~-----------------~~l~~~  155 (342)
                      +++.+|+++.   +++.+|.++...        |++++|++.+++++..+|++..++                 ..+|..
T Consensus        96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~  175 (235)
T TIGR03302        96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998776   689999999876        899999999999999999976442                 356788


Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701         156 CGLTNNARLASKFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVK  211 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  211 (342)
                      +...|++.+|+..+++++...|++   +.++..+|.++...|++++|..+++......|
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            999999999999999999997765   57899999999999999999999888766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4162|consensus

Probab=99.78  E-value=1.8e-16  Score=136.07  Aligned_cols=223  Identities=17%  Similarity=0.163  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc-CCCcHHHHHHhhhHHHhhcc
Q psy3701          49 ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL-DKLFLPAWLMYGHSFAVENE  127 (342)
Q Consensus        49 ~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~  127 (342)
                      .+++..++++            ++.+|+|+.+.+.++.-|...++.+.|....++++.+ ..+++.+|..++.++...++
T Consensus       461 ~kslqale~a------------v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr  528 (799)
T KOG4162|consen  461 KKSLQALEEA------------VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR  528 (799)
T ss_pred             HHHHHHHHHH------------HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            3456666664            4666666666666666666666666666666666666 33455666666666666666


Q ss_pred             HHHHHHHHHHHhccCCC---------------------------------------------------------------
Q psy3701         128 HDQAMAAYFNAFNLFKG---------------------------------------------------------------  144 (342)
Q Consensus       128 ~~~A~~~~~~al~~~~~---------------------------------------------------------------  144 (342)
                      +.+|+.....++.-.|.                                                               
T Consensus       529 ~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~  608 (799)
T KOG4162|consen  529 LKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD  608 (799)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence            66666655555433111                                                               


Q ss_pred             ---------------------------------C-------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHH
Q psy3701         145 ---------------------------------C-------HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH  184 (342)
Q Consensus       145 ---------------------------------~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  184 (342)
                                                       .       ...|...+..+...++.++|..++.++-.+.|..+.+|+
T Consensus       609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~  688 (799)
T KOG4162|consen  609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY  688 (799)
T ss_pred             cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence                                             1       122334566677777888888888888888888888888


Q ss_pred             HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh
Q psy3701         185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK  264 (342)
Q Consensus       185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  264 (342)
                      ..|.++...|++.+|...|..++.++|++                                    +.....+|.++.+.|
T Consensus       689 ~~G~~~~~~~~~~EA~~af~~Al~ldP~h------------------------------------v~s~~Ala~~lle~G  732 (799)
T KOG4162|consen  689 LRGLLLEVKGQLEEAKEAFLVALALDPDH------------------------------------VPSMTALAELLLELG  732 (799)
T ss_pred             HhhHHHHHHHhhHHHHHHHHHHHhcCCCC------------------------------------cHHHHHHHHHHHHhC
Confidence            88888888888888888888888888888                                    589999999999999


Q ss_pred             hHHHHHH--HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         265 KYEEALE--FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       265 ~~~~A~~--~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      +..-|..  .+..+++++|.++++|+.+|.++.+.|+.++|.++|+.++++.+.+|.
T Consensus       733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            8888877  999999999999999999999999999999999999999999988874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.78  E-value=8.4e-17  Score=136.46  Aligned_cols=205  Identities=13%  Similarity=0.049  Sum_probs=170.3

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL  150 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  150 (342)
                      +|+.+.++..+|.++...|+.+.+...+.++.+..|.+   .+.....+.++...|++++|...++++++..|.+..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            79999999999999999999999999998888777654   456777888999999999999999999999999887666


Q ss_pred             HHHHHHhhh----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH
Q psy3701         151 YVGLECGLT----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL  226 (342)
Q Consensus       151 ~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  226 (342)
                      . +..+...    +....+.+.+.......|........+|.++...|++++|+..++++++..|++             
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-------------  147 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-------------  147 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------------
Confidence            4 4444444    444455555544445667777788889999999999999999999999999988             


Q ss_pred             HHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHhCChHH
Q psy3701         227 NNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA----STFCCIGYIQALTGDLDS  302 (342)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~  302 (342)
                                             ..++..+|.++...|++++|+.++++++...|..+    ..+..++.++...|++++
T Consensus       148 -----------------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         148 -----------------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             -----------------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence                                   47889999999999999999999999999876433    346679999999999999


Q ss_pred             HHHHHHHHHhccc
Q psy3701         303 AVNYFHKTMALKR  315 (342)
Q Consensus       303 A~~~~~~al~~~p  315 (342)
                      |+..+++++...|
T Consensus       205 A~~~~~~~~~~~~  217 (355)
T cd05804         205 ALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.77  E-value=1.4e-15  Score=139.55  Aligned_cols=275  Identities=9%  Similarity=-0.028  Sum_probs=156.3

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHH-------------------HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhC
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGAL-------------------LADLFKLAHELVDLY-PDSAIAWYAVGCYYYLIG   92 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~-------------------~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~   92 (342)
                      .++..+...|.+.|++++|...|++..                   .++|+.+++++.... ..+..++..+...+...|
T Consensus       260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g  339 (697)
T PLN03081        260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA  339 (697)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            344456677778888888888887632                   134444444443321 113344555555555555


Q ss_pred             ChHHHHHHHHHHhhcC-CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHH
Q psy3701          93 RSDPARRFLGKATSLD-KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDL  171 (342)
Q Consensus        93 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  171 (342)
                      ++++|.+.+..+++.. +.+...+..+...|.+.|++++|...|++..+   .+..+|..+...|.+.|+.++|++.|++
T Consensus       340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~  416 (697)
T PLN03081        340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFER  416 (697)
T ss_pred             chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555555555443 23344455555556666666666666655543   1334555556666666666666666666


Q ss_pred             HHhh--CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCC
Q psy3701         172 ALSI--AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW  249 (342)
Q Consensus       172 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
                      ..+.  .| +...+..+...+...|+.++|..+|+...+..+-.+...........+...|. .+++...+......|. 
T Consensus       417 M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-~~eA~~~~~~~~~~p~-  493 (697)
T PLN03081        417 MIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-LDEAYAMIRRAPFKPT-  493 (697)
T ss_pred             HHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-HHHHHHHHHHCCCCCC-
Confidence            5542  22 33445555555556666666666666655432222211111111122222222 3344444444444443 


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      ...|..+...+...|+.+.|...+++.++..|++...+..++.+|.+.|++++|.+.++...+.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            3567788888888888888888888888888887778888888888888888888888776543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.77  E-value=1.1e-15  Score=129.76  Aligned_cols=270  Identities=10%  Similarity=-0.047  Sum_probs=193.3

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh----HHHHHHHHHHhhc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS----DPARRFLGKATSL  107 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----~~A~~~~~~a~~~  107 (342)
                      .+..+..|..+...|++++|...+++.            +..+|++..++.. +..++..|++    ..+...+......
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~------------l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQL------------LDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE  109 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcC
Confidence            445667788888889999998888885            5889999888775 6566555544    4444444444456


Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh----HHH
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP----FVI  183 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~  183 (342)
                      +|........+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.++    ..+
T Consensus       110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~  189 (355)
T cd05804         110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW  189 (355)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence            6777778888999999999999999999999999999999999999999999999999999999999887543    346


Q ss_pred             HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccc-cc-hh-hHHHHhh-----hhHHHHHHHhchhccCCCChHHHHH
Q psy3701         184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA-DK-WE-PLLNNLG-----HKAEDKVKQLGGEIIADKWEPLLNN  255 (342)
Q Consensus       184 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~-~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  255 (342)
                      ..+|.++...|++++|+..+++++...|........ .. +. ......+     ...+............+........
T Consensus       190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  269 (355)
T cd05804         190 WHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLH  269 (355)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHH
Confidence            689999999999999999999997665522100000 00 00 0000111     0011111111111011222233346


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCC---------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         256 LGHVNRKLKKYEEALEFHKQALVVAPM---------KASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      .+.++...|+.++|...++........         ........+.++...|++++|.+.+..++.+.
T Consensus       270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            788888999999999999887654322         23556778899999999999999999999765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.77  E-value=6.9e-15  Score=137.40  Aligned_cols=297  Identities=11%  Similarity=0.019  Sum_probs=205.7

Q ss_pred             chhhhhhhhhhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHh
Q psy3701          16 GVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVD   72 (342)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~   72 (342)
                      +..++..|....-.++..++..+-..+.+.|++++|..+|++..                       .++|+.++..+..
T Consensus       456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~  535 (1060)
T PLN03218        456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS  535 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            33444444432222334444445555555566666665555543                       1455555555544


Q ss_pred             cC-CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh----cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CCCc
Q psy3701          73 LY-PDSAIAWYAVGCYYYLIGRSDPARRFLGKATS----LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KGCH  146 (342)
Q Consensus        73 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~  146 (342)
                      .. ..+..+|..+...+.+.|++++|.+.|.+...    +.|+ ...|..+...|.+.|++++|.+.|+++.+.. +.+.
T Consensus       536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~  614 (1060)
T PLN03218        536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP  614 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh
Confidence            32 22467888999999999999999999998865    3444 5678888888999999999999999998876 3456


Q ss_pred             hHHHHHHHHHhhhCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhh
Q psy3701         147 LPALYVGLECGLTNNARLASKFFDLALSI--AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP  224 (342)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  224 (342)
                      ..|..+...|.+.|++++|.++|+++...  .| +...+..+...+.+.|++++|...++++.+...... .........
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd-~~tynsLI~  692 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG-TVSYSSLMG  692 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Confidence            77888888899999999999999988875  34 466788888899999999999999999887543221 111222222


Q ss_pred             HHHHhhhhHHHHHHHhchh---ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhCCh
Q psy3701         225 LLNNLGHKAEDKVKQLGGE---IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTGDL  300 (342)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~  300 (342)
                      .+...++ .+++...+...   ...| ....|..+...|.+.|++++|++.|+++.... ..+...+..+...+.+.|++
T Consensus       693 ay~k~G~-~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l  770 (1060)
T PLN03218        693 ACSNAKN-WKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA  770 (1060)
T ss_pred             HHHhCCC-HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            3333332 23334444432   2233 35689999999999999999999999987653 23556777788899999999


Q ss_pred             HHHHHHHHHHHhc--ccCc
Q psy3701         301 DSAVNYFHKTMAL--KRDD  317 (342)
Q Consensus       301 ~~A~~~~~~al~~--~p~~  317 (342)
                      ++|...+.++.+.  .|+.
T Consensus       771 e~A~~l~~~M~k~Gi~pd~  789 (1060)
T PLN03218        771 DVGLDLLSQAKEDGIKPNL  789 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCH
Confidence            9999999999875  4543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.76  E-value=2.1e-16  Score=120.69  Aligned_cols=130  Identities=12%  Similarity=0.124  Sum_probs=95.5

Q ss_pred             hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHH
Q psy3701         159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK  238 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (342)
                      .++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|++                         
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------------------------  106 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-------------------------  106 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence            4566777777777777777777777777777777777777777777777777777                         


Q ss_pred             HhchhccCCCChHHHHHHHHHH-HHhhh--HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         239 QLGGEIIADKWEPLLNNLGHVN-RKLKK--YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                                 ..++..+|.++ ...|+  +++|...++++++.+|+++.++..+|..+...|++++|+.+++++++..|
T Consensus       107 -----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~  175 (198)
T PRK10370        107 -----------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS  175 (198)
T ss_pred             -----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                       46777777764 55566  47777777777777777777777777777777777777777777777776


Q ss_pred             CchhHHhHH
Q psy3701         316 DDSFATTML  324 (342)
Q Consensus       316 ~~~~~~~~l  324 (342)
                      .+..-...+
T Consensus       176 ~~~~r~~~i  184 (198)
T PRK10370        176 PRVNRTQLV  184 (198)
T ss_pred             CCccHHHHH
Confidence            655444444

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.76  E-value=1.1e-14  Score=136.04  Aligned_cols=285  Identities=12%  Similarity=0.025  Sum_probs=219.7

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhcCC-CcHHHHHHHH
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGAL-----------------------LADLFKLAHELVDLYP-DSAIAWYAVG   85 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-----------------------~~~a~~~~~~~~~~~p-~~~~~~~~l~   85 (342)
                      ++...+..+-..+...|+++.|..+|....                       .++|..+++++..... .+..+|..+.
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI  514 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI  514 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            345566666777889999999999998765                       3788889998877643 3688999999


Q ss_pred             HHHHHhCChHHHHHHHHHHhhc--CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc----CCCCchHHHHHHHHHhhh
Q psy3701          86 CYYYLIGRSDPARRFLGKATSL--DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL----FKGCHLPALYVGLECGLT  159 (342)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~  159 (342)
                      ..|.+.|++++|...|++....  .| +...|..+...+...|++++|.+.+.++...    .|+ ...+..+...|.+.
T Consensus       515 ~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~  592 (1060)
T PLN03218        515 DGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANA  592 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHC
Confidence            9999999999999999998764  34 4678999999999999999999999999753    343 56777788899999


Q ss_pred             CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHH
Q psy3701         160 NNARLASKFFDLALSIA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK  238 (342)
Q Consensus       160 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (342)
                      |++++|.+.|+++.+.. +.+...|..+...|.+.|++++|+..|++..+..-.. +..........+...+. .+++..
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~-~eeA~~  670 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD-LDKAFE  670 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC-HHHHHH
Confidence            99999999999999876 4577899999999999999999999999988753221 11111122222222222 233333


Q ss_pred             Hhchhc--cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhCChHHHHHHHHHHHh--c
Q psy3701         239 QLGGEI--IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTGDLDSAVNYFHKTMA--L  313 (342)
Q Consensus       239 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~  313 (342)
                      .+....  ........+..+...|.+.|++++|.+.|+++.+.. ..+...|..+...|.+.|++++|.+.|+++..  +
T Consensus       671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi  750 (1060)
T PLN03218        671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL  750 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            333322  122335689999999999999999999999987642 23567899999999999999999999998875  4


Q ss_pred             ccCch
Q psy3701         314 KRDDS  318 (342)
Q Consensus       314 ~p~~~  318 (342)
                      .|+..
T Consensus       751 ~Pd~~  755 (1060)
T PLN03218        751 CPNTI  755 (1060)
T ss_pred             CCCHH
Confidence            56543

>KOG0550|consensus

Probab=99.75  E-value=4.8e-17  Score=130.14  Aligned_cols=231  Identities=15%  Similarity=0.047  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      +.-....|..++...+|.+|+..+..|+.+.|++...|...+.+++..|++++|....++.+++.|.........+.++.
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL  128 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence            34456678888999999999999999999999999999999999999999999999999999998775555444444444


Q ss_pred             ----------------------------------------------------hhCCHHHHHHHHHHHHhhCCCChHHHHH
Q psy3701         158 ----------------------------------------------------LTNNARLASKFFDLALSIAHEDPFVIHE  185 (342)
Q Consensus       158 ----------------------------------------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~  185 (342)
                                                                          ..|++++|...--..+++++.+.++++.
T Consensus       129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v  208 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV  208 (486)
T ss_pred             hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence                                                                4455555555555556666667777777


Q ss_pred             HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701         186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      .|.+++..++.+.|+..|++++.++|+..                        ........+.....+..-|+-..+.|+
T Consensus       209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~------------------------~sk~~~~~~k~le~~k~~gN~~fk~G~  264 (486)
T KOG0550|consen  209 RGLCLYYNDNADKAINHFQQALRLDPDHQ------------------------KSKSASMMPKKLEVKKERGNDAFKNGN  264 (486)
T ss_pred             cccccccccchHHHHHHHhhhhccChhhh------------------------hHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence            77777777777777777777777777762                        111112233445788889999999999


Q ss_pred             HHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         266 YEEALEFHKQALVVAPMKA----STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      +.+|.+.|..+|.++|++.    ..+.+++.+..++|+..+|+..+..++.++|....++..-+.|...+.
T Consensus       265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le  335 (486)
T KOG0550|consen  265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE  335 (486)
T ss_pred             hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999864    568899999999999999999999999999999988888877765543

>KOG1127|consensus

Probab=99.75  E-value=1.6e-16  Score=139.71  Aligned_cols=301  Identities=14%  Similarity=0.103  Sum_probs=205.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCc--HHHHHHHHHH
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDS--AIAWYAVGCY   87 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~--~~~~~~l~~~   87 (342)
                      +..+-.+|.+|....+..+|..+|+++.                      ++.|..+....-+..|-.  ...|..+|..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            3455678999998889999999999986                      244444433333333322  2345556777


Q ss_pred             HHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHH
Q psy3701          88 YYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASK  167 (342)
Q Consensus        88 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  167 (342)
                      |...+++..|+..|+.++..+|.+.+.|..+|.+|...|++..|++.|.++..++|.+..+.+..+.+....|.|.+|+.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhhCCCChH-------HHHHHHHHHHHhcChhHHHHHHHHHHHhhh--------hc-------------------
Q psy3701         168 FFDLALSIAHEDPF-------VIHEMGVIAYQNHNYTVAENCFMEALSKVK--------QL-------------------  213 (342)
Q Consensus       168 ~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~-------------------  213 (342)
                      .+...+........       .+..++..+...|=+.+|..+++++++..-        ++                   
T Consensus       652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~  731 (1238)
T KOG1127|consen  652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP  731 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence            77776654433222       222333333333333444444444332110        00                   


Q ss_pred             --C--------------------cc----------------ccccchhhHHHHhhh----------hHHHHHHHhch-hc
Q psy3701         214 --G--------------------GE----------------IIADKWEPLLNNLGH----------KAEDKVKQLGG-EI  244 (342)
Q Consensus       214 --~--------------------~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~  244 (342)
                        +                    .+                .....|..+-.+.-+          ....++..+.. ..
T Consensus       732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~  811 (1238)
T KOG1127|consen  732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS  811 (1238)
T ss_pred             cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence              0                    00                023355543333222          11233344443 34


Q ss_pred             cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701         245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML  324 (342)
Q Consensus       245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  324 (342)
                      ........|..+|.+ ...|++.-|..+|-+.+...|.....|.++|.++.+..+++.|...|.++..++|.+...|...
T Consensus       812 L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~  890 (1238)
T KOG1127|consen  812 LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGE  890 (1238)
T ss_pred             HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence            455566799999988 6669999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhhh
Q psy3701         325 SYVIEQLIE  333 (342)
Q Consensus       325 ~~~~~~~~~  333 (342)
                      +.+.+..+.
T Consensus       891 Ali~eavG~  899 (1238)
T KOG1127|consen  891 ALIPEAVGR  899 (1238)
T ss_pred             HHhHHHHHH
Confidence            877777653

>KOG1156|consensus

Probab=99.74  E-value=9.6e-15  Score=123.41  Aligned_cols=272  Identities=16%  Similarity=0.101  Sum_probs=214.4

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL  112 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  112 (342)
                      +.+-.+|-.+...|+-++|.+..+.+            +..++.+..+|..+|.++....+|++|+++|+.|+.++|+|.
T Consensus        42 eslAmkGL~L~~lg~~~ea~~~vr~g------------lr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~  109 (700)
T KOG1156|consen   42 ESLAMKGLTLNCLGKKEEAYELVRLG------------LRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL  109 (700)
T ss_pred             hhHHhccchhhcccchHHHHHHHHHH------------hccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence            34446777777778888887777776            588999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC---CCCh---------
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA---HEDP---------  180 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~---------  180 (342)
                      ..|..++....++++++.....-.+.++..|.....|...+..+...|++..|....+...+..   |+..         
T Consensus       110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L  189 (700)
T KOG1156|consen  110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL  189 (700)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888776544   2211         


Q ss_pred             ------------------------------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701         181 ------------------------------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG  230 (342)
Q Consensus       181 ------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                                                    ......|.+++.++++++|+..|...+..+|++-     .........+|
T Consensus       190 y~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~-----~Yy~~l~~~lg  264 (700)
T KOG1156|consen  190 YQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL-----DYYEGLEKALG  264 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH-----HHHHHHHHHHH
Confidence                                          1133467888999999999999999999999874     10000000000


Q ss_pred             --------------------------------------------h----------------------------hHHHHHH
Q psy3701         231 --------------------------------------------H----------------------------KAEDKVK  238 (342)
Q Consensus       231 --------------------------------------------~----------------------------~~~~~~~  238 (342)
                                                                  .                            ..+....
T Consensus       265 k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt  344 (700)
T KOG1156|consen  265 KIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVT  344 (700)
T ss_pred             HHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHH
Confidence                                                        0                            0000000


Q ss_pred             Hhc----hh-----------ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHH
Q psy3701         239 QLG----GE-----------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSA  303 (342)
Q Consensus       239 ~~~----~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  303 (342)
                      .+.    ..           ..+......++.++..+-..|+++.|..+++.|+...|..++.+...|+++...|+.++|
T Consensus       345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eA  424 (700)
T KOG1156|consen  345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEA  424 (700)
T ss_pred             HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHH
Confidence            000    00           011112345566788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCchhHH
Q psy3701         304 VNYFHKTMALKRDDSFAT  321 (342)
Q Consensus       304 ~~~~~~al~~~p~~~~~~  321 (342)
                      ..++..+.+++-.|....
T Consensus       425 a~~l~ea~elD~aDR~IN  442 (700)
T KOG1156|consen  425 AAWLDEAQELDTADRAIN  442 (700)
T ss_pred             HHHHHHHHhccchhHHHH
Confidence            999999999987666433

>KOG1130|consensus

Probab=99.74  E-value=1.8e-16  Score=127.02  Aligned_cols=282  Identities=19%  Similarity=0.148  Sum_probs=209.1

Q ss_pred             cchhhhhhhhh---hhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q psy3701          15 EGVSFFCWFSQ---LQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLI   91 (342)
Q Consensus        15 ~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~   91 (342)
                      .|++||....+   ..-..-+.+|..+|++|...++|++|+++...-+      ...+.+...-..+.+--++|..+-..
T Consensus        35 aGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl------tlar~lgdklGEAKssgNLGNtlKv~  108 (639)
T KOG1130|consen   35 AGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL------TLARLLGDKLGEAKSSGNLGNTLKVK  108 (639)
T ss_pred             hhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH------HHHHHhcchhccccccccccchhhhh
Confidence            56677766442   2233557888899999999999999999877653      22233444445566778899999999


Q ss_pred             CChHHHHHHHHHHhhcCCC------cHHHHHHhhhHHHhhcc--------------------HHHHHHHHHHHhccCCC-
Q psy3701          92 GRSDPARRFLGKATSLDKL------FLPAWLMYGHSFAVENE--------------------HDQAMAAYFNAFNLFKG-  144 (342)
Q Consensus        92 ~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~-  144 (342)
                      |.|++|+.+..+-+.+...      ...+++++|.+|...|+                    ++.|.++|..-+++... 
T Consensus       109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l  188 (639)
T KOG1130|consen  109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL  188 (639)
T ss_pred             cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999887765332      25689999999988764                    34556666655554322 


Q ss_pred             -----CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         145 -----CHLPALYVGLECGLTNNARLASKFFDLALSIAHE------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       145 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                           ...++-.+|..|+.+|+++.|+..-+.-+.+...      ...++.++|.++...|+++.|+++|++.+.+...-
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel  268 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL  268 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence                 2345667889999999999999998877766533      23578899999999999999999999988776543


Q ss_pred             CccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC------CchHHH
Q psy3701         214 GGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MKASTF  287 (342)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~  287 (342)
                      .                              .....+...+.+|+.|.-..++++|+.++.+-+.+..      ....++
T Consensus       269 g------------------------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac  318 (639)
T KOG1130|consen  269 G------------------------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC  318 (639)
T ss_pred             c------------------------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            2                              1112256889999999999999999999999877643      345678


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcc-----cC-chhHHhHHHHHHHHhh
Q psy3701         288 CCIGYIQALTGDLDSAVNYFHKTMALK-----RD-DSFATTMLSYVIEQLI  332 (342)
Q Consensus       288 ~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~  332 (342)
                      +.+|..+...|..++|+.+.++.+++.     |. ...+..+|......++
T Consensus       319 wSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG  369 (639)
T KOG1130|consen  319 WSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELG  369 (639)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhC
Confidence            899999999999999999988877652     22 2345566666555544

>KOG3060|consensus

Probab=99.72  E-value=1.1e-14  Score=109.45  Aligned_cols=190  Identities=14%  Similarity=-0.008  Sum_probs=152.2

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG  153 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  153 (342)
                      .|+....+-....+....|+.+-|..++++.....|.+...-...|..+...|++++|+++|...++-+|.+...+...-
T Consensus        48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            34445555666677777888888888888888878888888888888888888888888888888888888888877777


Q ss_pred             HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701         154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA  233 (342)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
                      .+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++.+-+.|.+                    
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n--------------------  187 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN--------------------  187 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc--------------------
Confidence            777778888888888888888888888888888888888888888888888888888888                    


Q ss_pred             HHHHHHhchhccCCCChHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701         234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD  299 (342)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  299 (342)
                                      +..+..+|.+++-+|   ++.-|.++|.++++++|.+..+++.+-.+....-+
T Consensus       188 ----------------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~  240 (289)
T KOG3060|consen  188 ----------------PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ  240 (289)
T ss_pred             ----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence                            367777888877665   56678888888888888777777776666554443

>KOG1127|consensus

Probab=99.72  E-value=3e-15  Score=131.89  Aligned_cols=236  Identities=18%  Similarity=0.066  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhc
Q psy3701          61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN  140 (342)
Q Consensus        61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  140 (342)
                      ..++..+-+.++.+|.-+.+|..+|.+|...-+...|.++|++|.++|+.+..++-..+..|....+++.|....-.+-+
T Consensus       475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q  554 (1238)
T KOG1127|consen  475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ  554 (1238)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence            44555555567999999999999999999999999999999999999999999999999999999999999999877777


Q ss_pred             cCCCC--chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccc
Q psy3701         141 LFKGC--HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII  218 (342)
Q Consensus       141 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  218 (342)
                      ..|..  ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+     
T Consensus       555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-----  629 (1238)
T KOG1127|consen  555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-----  629 (1238)
T ss_pred             hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-----
Confidence            77653  34566799999999999999999999999999999999999999999999999999999999999998     


Q ss_pred             ccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH-------HHHHHH
Q psy3701         219 ADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS-------TFCCIG  291 (342)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~l~  291 (342)
                                                     .-..+..+.+...+|+|.+|+..+...+........       .+..++
T Consensus       630 -------------------------------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a  678 (1238)
T KOG1127|consen  630 -------------------------------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA  678 (1238)
T ss_pred             -------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence                                           467788899999999999999999998876554444       444444


Q ss_pred             HHHHHhCChHHHHHHHHHHHh-------cc-cCchhHHhHHHHHHHHhh
Q psy3701         292 YIQALTGDLDSAVNYFHKTMA-------LK-RDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       292 ~~~~~~g~~~~A~~~~~~al~-------~~-p~~~~~~~~l~~~~~~~~  332 (342)
                      ..+.-.|=...|..+++++++       .. -++...|..++...--+.
T Consensus       679 kd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~  727 (1238)
T KOG1127|consen  679 KDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS  727 (1238)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence            444445555556666655544       23 455566666665554433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.72  E-value=2e-15  Score=115.38  Aligned_cols=123  Identities=14%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH-hhhCC--HHHHHH
Q psy3701          91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC-GLTNN--ARLASK  167 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~  167 (342)
                      .++.++++..++++++.+|++++.|..+|.++...|++++|+..|++++++.|+++..+..+|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            455566667777777777777777777777777777777777777777777777777777777653 45555  467777


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      .++++++.+|+++.++..+|..++..|++++|+..++++++..|.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            7777777777777777777777777777777777777777766655

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.72  E-value=1.8e-14  Score=132.38  Aligned_cols=291  Identities=10%  Similarity=-0.048  Sum_probs=195.2

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHH---------------------------------------------------
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGAL---------------------------------------------------   59 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~---------------------------------------------------   59 (342)
                      +...|..+...+...|++++|+..|++..                                                   
T Consensus       188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~  267 (697)
T PLN03081        188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID  267 (697)
T ss_pred             CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence            44556667777788888888888887753                                                   


Q ss_pred             -------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC-CCcHHHHHHhhhHHHhhccHHHH
Q psy3701          60 -------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD-KLFLPAWLMYGHSFAVENEHDQA  131 (342)
Q Consensus        60 -------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A  131 (342)
                             .++|..+++++   .+.+..+|..+...|.+.|++++|...|++..... .-+...+..+..++...|++++|
T Consensus       268 ~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a  344 (697)
T PLN03081        268 MYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA  344 (697)
T ss_pred             HHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence                   13344444433   23355666666666667777777777776665432 11344566666666677777777


Q ss_pred             HHHHHHHhccC-CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh
Q psy3701         132 MAAYFNAFNLF-KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKV  210 (342)
Q Consensus       132 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  210 (342)
                      .+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+   .+...|+.+...|.+.|+.++|++.|++..+..
T Consensus       345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            77776666654 33455666777788888888888888887653   356678888889999999999999999887643


Q ss_pred             hhcCccccccchhhHHHHhhhhHHHHHHHhchh----ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH
Q psy3701         211 KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE----IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST  286 (342)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  286 (342)
                      ... +..............| ..++....+...    ...|. ...|..+...+.+.|++++|.+.+++. ...| +..+
T Consensus       422 ~~P-d~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~  496 (697)
T PLN03081        422 VAP-NHVTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNM  496 (697)
T ss_pred             CCC-CHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHH
Confidence            222 1111111112222222 223333444332    22232 357888999999999999999998764 2233 4567


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         287 FCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       287 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      |..+...+...|+.+.|...+++.+++.|++...+..|..++...+
T Consensus       497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G  542 (697)
T PLN03081        497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG  542 (697)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC
Confidence            9999999999999999999999999999999888888887765543

>KOG1128|consensus

Probab=99.72  E-value=2e-15  Score=129.19  Aligned_cols=220  Identities=16%  Similarity=0.130  Sum_probs=192.7

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL  112 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  112 (342)
                      .....++..+...|-...|+..|++                    ...|-....||...|+..+|.....+-++ .|.++
T Consensus       399 q~q~~laell~slGitksAl~I~Er--------------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~  457 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFER--------------------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDP  457 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHh--------------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcc
Confidence            3444577777788877777777777                    45678888999999999999999999988 66678


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (342)
                      ..|..+|++.....=|++|.++.+..      +..+...+|......++++++.+.++..++++|-....|+.+|.+..+
T Consensus       458 ~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq  531 (777)
T KOG1128|consen  458 RLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ  531 (777)
T ss_pred             hhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH
Confidence            88888888887777677777665543      334667778888889999999999999999999999999999999999


Q ss_pred             hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH
Q psy3701         193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF  272 (342)
Q Consensus       193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (342)
                      .++++.|.+.|.+++..+|++                                    ..+|.+++.+|.+.|+-.+|...
T Consensus       532 lek~q~av~aF~rcvtL~Pd~------------------------------------~eaWnNls~ayi~~~~k~ra~~~  575 (777)
T KOG1128|consen  532 LEKEQAAVKAFHRCVTLEPDN------------------------------------AEAWNNLSTAYIRLKKKKRAFRK  575 (777)
T ss_pred             HhhhHHHHHHHHHHhhcCCCc------------------------------------hhhhhhhhHHHHHHhhhHHHHHH
Confidence            999999999999999999999                                    59999999999999999999999


Q ss_pred             HHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         273 HKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       273 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                      ++++++.+-++..+|.+.-.+..+.|.+++|++.+.+.+.+..
T Consensus       576 l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  576 LKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             HHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            9999999988999999999999999999999999999987643

>KOG3060|consensus

Probab=99.72  E-value=2.5e-14  Score=107.66  Aligned_cols=190  Identities=15%  Similarity=0.102  Sum_probs=161.9

Q ss_pred             cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      ..|+....+-....+....|+.+.|..++.+.....|++..+....|..+...|++++|+++|+..++-+|.+..++-..
T Consensus        47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK  126 (289)
T KOG3060|consen   47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK  126 (289)
T ss_pred             cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence            34444445556667778889999999999998888899988888899999999999999999999999999998888888


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY  266 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (342)
                      -.+...+|+.-+|++.+...++..+.+                                    .++|..++.+|...|+|
T Consensus       127 lAilka~GK~l~aIk~ln~YL~~F~~D------------------------------------~EAW~eLaeiY~~~~~f  170 (289)
T KOG3060|consen  127 LAILKAQGKNLEAIKELNEYLDKFMND------------------------------------QEAWHELAEIYLSEGDF  170 (289)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHhcCc------------------------------------HHHHHHHHHHHHhHhHH
Confidence            888888899999999999999999888                                    58999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC---ChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         267 EEALEFHKQALVVAPMKASTFCCIGYIQALTG---DLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ++|.-++++.+-+.|.++..+..+|.+++-+|   +.+-|.++|.++++++|.+..+++.+..+-..+.
T Consensus       171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence            99999999999999999998999999888776   5677899999999999988888777766555443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.71  E-value=3.3e-15  Score=113.31  Aligned_cols=142  Identities=15%  Similarity=0.093  Sum_probs=77.2

Q ss_pred             HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701          71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL  150 (342)
Q Consensus        71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  150 (342)
                      ...+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|++..|+..++++....|++..+|.
T Consensus        60 ~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~  138 (257)
T COG5010          60 VLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN  138 (257)
T ss_pred             HhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence            3445555555 555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      .+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++.++....+.+
T Consensus       139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad  201 (257)
T COG5010         139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD  201 (257)
T ss_pred             HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence            555555555555555555555555555555555555555555555555555555554444333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.71  E-value=4e-15  Score=134.01  Aligned_cols=220  Identities=11%  Similarity=-0.025  Sum_probs=123.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      ..++..+...+...+++++|+...+.+            +..+|+....++.+|.++++.++++++...  .++...+.+
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~------------l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~   96 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEH------------LKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN   96 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence            344445555555566666666666553            355666666666666666666655554444  333333332


Q ss_pred             H-------------------HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHH
Q psy3701         112 L-------------------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLA  172 (342)
Q Consensus       112 ~-------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  172 (342)
                      .                   .+++.+|.||..+|+.++|...|+++++.+|+++.+..++|..|... +.++|++++.++
T Consensus        97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA  175 (906)
T PRK14720         97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA  175 (906)
T ss_pred             cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            2                   44444555555555555555555555555555555555555544444 455555554444


Q ss_pred             HhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHH
Q psy3701         173 LSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (342)
                      +..              +...++|.++..++.+.+..+|.+.                +.+-..................
T Consensus       176 V~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~----------------d~f~~i~~ki~~~~~~~~~~~~  225 (906)
T PRK14720        176 IYR--------------FIKKKQYVGIEEIWSKLVHYNSDDF----------------DFFLRIERKVLGHREFTRLVGL  225 (906)
T ss_pred             HHH--------------HHhhhcchHHHHHHHHHHhcCcccc----------------hHHHHHHHHHHhhhccchhHHH
Confidence            432              3333444444444444444444442                0111111111111112333567


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701         253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL  296 (342)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  296 (342)
                      +.-+=..|...+++++++.+++.+++.+|.+..+...++.+|..
T Consensus       226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence            77777889999999999999999999999999999999999973

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.71  E-value=7.9e-15  Score=111.27  Aligned_cols=151  Identities=19%  Similarity=0.150  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHH
Q psy3701          55 YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA  134 (342)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  134 (342)
                      +..+.-+.......++...+|.+...+..+|...+..|++.+|+..++++....|++.++|..+|.+|.+.|++++|...
T Consensus        77 ~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~a  156 (257)
T COG5010          77 YLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRA  156 (257)
T ss_pred             HhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHH
Confidence            33333456666777777788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701         135 YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME  205 (342)
Q Consensus       135 ~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  205 (342)
                      |.+++++.|..+.+..++|..+...|+++.|..++..+....+.+..+..+++.+....|++++|..+..+
T Consensus       157 y~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         157 YRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            99999999999999999999999999999999999999998888999999999999999999999887654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.71  E-value=2.5e-15  Score=135.30  Aligned_cols=212  Identities=10%  Similarity=0.035  Sum_probs=178.8

Q ss_pred             HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc----
Q psy3701          71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH----  146 (342)
Q Consensus        71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----  146 (342)
                      ...+|.+..+|..+...+...+++++|+..++.+++.+|+....++.+|.++...++++++...  .++...+.+.    
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            3467899999999999999999999999999999999999999999999999999998888776  6776666655    


Q ss_pred             ---------------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701         147 ---------------LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVK  211 (342)
Q Consensus       147 ---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  211 (342)
                                     .+++.+|.+|-++|+.++|...++++++.+|+++.+++++|..+... +.++|+.++.+++... 
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~-  179 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF-  179 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH-
Confidence                           78888999999999999999999999999999999999999999988 9999999998887643 


Q ss_pred             hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH-----
Q psy3701         212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST-----  286 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----  286 (342)
                                                                       ...+++.++.+++.+.+..+|++.+.     
T Consensus       180 -------------------------------------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~  210 (906)
T PRK14720        180 -------------------------------------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE  210 (906)
T ss_pred             -------------------------------------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence                                                             33346666666677776666665433     


Q ss_pred             ---------------HHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701         287 ---------------FCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES  335 (342)
Q Consensus       287 ---------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  335 (342)
                                     +.-+=..|...++|++++..++.+++.+|+|..++..+..++.....+.
T Consensus       211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~  274 (906)
T PRK14720        211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDH  274 (906)
T ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCc
Confidence                           2333477888999999999999999999999999999999997654443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.70  E-value=4.4e-14  Score=121.95  Aligned_cols=236  Identities=11%  Similarity=0.012  Sum_probs=169.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      .+++++....++...|++++|++.+.+..            ..-++....+-..|.++..+|++++|...|...+..+|+
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~------------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd   70 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNE------------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD   70 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhh------------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            35666777888888899999998888752            455666677777788888888888888888888888887


Q ss_pred             cHHHHHHhhhHHHhhc-----cHHHHHHHHHHHhccCC------------------------------------------
Q psy3701         111 FLPAWLMYGHSFAVEN-----EHDQAMAAYFNAFNLFK------------------------------------------  143 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~------------------------------------------  143 (342)
                      +...+..+..+.....     +.+.-...|.+.....|                                          
T Consensus        71 n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk  150 (517)
T PF12569_consen   71 NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLK  150 (517)
T ss_pred             cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            7777666666652222     23333344433322200                                          


Q ss_pred             -------------------------------------CCc----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHH
Q psy3701         144 -------------------------------------GCH----LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV  182 (342)
Q Consensus       144 -------------------------------------~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  182 (342)
                                                           ..+    ++++.++..|...|++++|++++++++...|..++.
T Consensus       151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el  230 (517)
T PF12569_consen  151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL  230 (517)
T ss_pred             HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence                                                 011    344667888888899999999999999999988999


Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      +...|.++-..|++.+|...++.+..+++.+.                                    -+....+..+.+
T Consensus       231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR------------------------------------yiNsK~aKy~LR  274 (517)
T PF12569_consen  231 YMTKARILKHAGDLKEAAEAMDEARELDLADR------------------------------------YINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH------------------------------------HHHHHHHHHHHH
Confidence            99999999999999999999999888888772                                    455556777788


Q ss_pred             hhhHHHHHHHHHHHHhhCCC--c-------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         263 LKKYEEALEFHKQALVVAPM--K-------ASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~--~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      .|+.++|.+.+..-.+.+.+  .       .+.....|.+|.+.|++..|+..|..+.+..
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            88888888887766544311  1       1223456888888999999988888777653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.70  E-value=2.1e-15  Score=109.17  Aligned_cols=125  Identities=16%  Similarity=0.125  Sum_probs=109.0

Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701         167 KFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA  246 (342)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (342)
                      ..+++++..+|++......+|..+...|++++|+..+++++..+|.+                                 
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------------------------   50 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------------------------------   50 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------------------------
Confidence            45778888889888888899999999999999999999999888887                                 


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                         ..++..+|.++...|++++|+..+++++..+|+++..++.+|.++...|++++|+..|+++++++|++.........
T Consensus        51 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  127 (135)
T TIGR02552        51 ---SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKER  127 (135)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence               48889999999999999999999999999999999999999999999999999999999999999988875554444


Q ss_pred             H
Q psy3701         327 V  327 (342)
Q Consensus       327 ~  327 (342)
                      +
T Consensus       128 ~  128 (135)
T TIGR02552       128 A  128 (135)
T ss_pred             H
Confidence            3

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.69  E-value=2.4e-15  Score=134.37  Aligned_cols=147  Identities=11%  Similarity=-0.057  Sum_probs=140.6

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc
Q psy3701          67 AHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH  146 (342)
Q Consensus        67 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  146 (342)
                      ........|.+++++..+|.+..+.|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++.
T Consensus        75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~  154 (694)
T PRK15179         75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA  154 (694)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence            34456779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      .+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+.
T Consensus       155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999876554

>PLN03077 Protein ECB2; Provisional

Probab=99.69  E-value=5.7e-14  Score=132.10  Aligned_cols=294  Identities=9%  Similarity=-0.033  Sum_probs=182.3

Q ss_pred             cchhhhhhhhhhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHhCC
Q psy3701          15 EGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDL-YPDSAIAWYAVGCYYYLIGR   93 (342)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~   93 (342)
                      ++..++..|....-.++...+..+-..+...|++++|.+++....            +. ...+..++..+...|.+.|+
T Consensus       372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~------------~~g~~~~~~~~n~Li~~y~k~g~  439 (857)
T PLN03077        372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE------------RKGLISYVVVANALIEMYSKCKC  439 (857)
T ss_pred             HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH------------HhCCCcchHHHHHHHHHHHHcCC
Confidence            444455544422222222233333335556666666666666542            21 12234445555555555555


Q ss_pred             hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CC----------------------------
Q psy3701          94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KG----------------------------  144 (342)
Q Consensus        94 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~----------------------------  144 (342)
                      +++|.+.|++..+   .+...|..+...+...|+.++|+..|+++.... |+                            
T Consensus       440 ~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~  516 (857)
T PLN03077        440 IDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL  516 (857)
T ss_pred             HHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence            5555555555332   223445555555555555555555555554321 11                            


Q ss_pred             ------CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccc
Q psy3701         145 ------CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII  218 (342)
Q Consensus       145 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  218 (342)
                            +......+...|.+.|+.++|...|+..    +.+...|+.+...|...|+.++|+..|++..+..... +...
T Consensus       517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T  591 (857)
T PLN03077        517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVT  591 (857)
T ss_pred             HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-Cccc
Confidence                  1222233556788889999999888875    5578889999999999999999999999887643221 1222


Q ss_pred             ccchhhHHHHhhhhHHHHHHHhchh----ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Q psy3701         219 ADKWEPLLNNLGHKAEDKVKQLGGE----IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQ  294 (342)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  294 (342)
                      .......+...|. .++....+...    ...|. ...|..+..++.+.|++++|.+.+++. ...| +..+|..+-..+
T Consensus       592 ~~~ll~a~~~~g~-v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac  667 (857)
T PLN03077        592 FISLLCACSRSGM-VTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNAC  667 (857)
T ss_pred             HHHHHHHHhhcCh-HHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Confidence            2222223332232 33344444432    22333 468899999999999999999999886 3445 466788888888


Q ss_pred             HHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         295 ALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       295 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ...|+.+.+....+++++++|++...+..|+.++...+
T Consensus       668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g  705 (857)
T PLN03077        668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG  705 (857)
T ss_pred             HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence            88999999999999999999999999999988876543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.68  E-value=6.6e-15  Score=131.60  Aligned_cols=148  Identities=9%  Similarity=-0.037  Sum_probs=124.6

Q ss_pred             HHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHH
Q psy3701         103 KATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV  182 (342)
Q Consensus       103 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  182 (342)
                      ......|.+++++..||.+....|++++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+|+++..
T Consensus        77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~  156 (694)
T PRK15179         77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE  156 (694)
T ss_pred             HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence            33445677888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      ++.+|.++...|++++|+..|++++..+|++                                    ..++..+|.++..
T Consensus       157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~------------------------------------~~~~~~~a~~l~~  200 (694)
T PRK15179        157 ILLEAKSWDEIGQSEQADACFERLSRQHPEF------------------------------------ENGYVGWAQSLTR  200 (694)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCCCc------------------------------------HHHHHHHHHHHHH
Confidence            8888888888888888888888888877766                                    5788888888888


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHH
Q psy3701         263 LKKYEEALEFHKQALVVAPMKAST  286 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~  286 (342)
                      .|+.++|...|++++....+-...
T Consensus       201 ~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        201 RGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             cCCHHHHHHHHHHHHHhhCcchHH
Confidence            888888888888888876554433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.67  E-value=5e-14  Score=115.82  Aligned_cols=154  Identities=17%  Similarity=0.038  Sum_probs=129.7

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG  153 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  153 (342)
                      +|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+.++|.+.+++++..+|..+..+..+|
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            36778888888999999999999999999988889999888888899999999999999999999999998888888888


Q ss_pred             HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701         154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA  233 (342)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
                      ..+.+.|++.+|+..++..+..+|+++..|..++..|..+|+-.++..                                
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~--------------------------------  429 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL--------------------------------  429 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH--------------------------------
Confidence            899999998899999888888888888888888888888887655443                                


Q ss_pred             HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701         234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA  280 (342)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  280 (342)
                                           ..+..+...|++++|+..+..+.+..
T Consensus       430 ---------------------A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         430 ---------------------ARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             ---------------------HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence                                 34555666788888888888877765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.67  E-value=1.2e-14  Score=117.18  Aligned_cols=241  Identities=17%  Similarity=0.089  Sum_probs=183.5

Q ss_pred             hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      .+..+......+.+++..+|+++..+.-....               .+....+...++..+...++.+.++.-++..+.
T Consensus        30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---------------~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~   94 (290)
T PF04733_consen   30 SPENKLERDFYQYRSYIALGQYDSVLSEIKKS---------------SSPELQAVRLLAEYLSSPSDKESALEELKELLA   94 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---------------SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCC
T ss_pred             CchhHHHHHHHHHHHHHHcCChhHHHHHhccC---------------CChhHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            33445666677889999999988777666552               233345566677666555566777777766554


Q ss_pred             cCC--CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHH
Q psy3701         107 LDK--LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH  184 (342)
Q Consensus       107 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  184 (342)
                      ...  .++......|.++...|++++|++.+.+.     ++.+.......++...++++.|.+.++.+.+.+.+..-+..
T Consensus        95 ~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL  169 (290)
T PF04733_consen   95 DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL  169 (290)
T ss_dssp             TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence            332  34556667788899999999999987654     45667777888999999999999999999988877776666


Q ss_pred             HHHHHHHHhc--ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         185 EMGVIAYQNH--NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       185 ~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      ..+++....|  ++.+|...|++..+..+.+                                    +..+..++.+++.
T Consensus       170 a~awv~l~~g~e~~~~A~y~f~El~~~~~~t------------------------------------~~~lng~A~~~l~  213 (290)
T PF04733_consen  170 AEAWVNLATGGEKYQDAFYIFEELSDKFGST------------------------------------PKLLNGLAVCHLQ  213 (290)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHCCS--S------------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhccCCC------------------------------------HHHHHHHHHHHHH
Confidence            6677777666  5999999999977765555                                    5788999999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCCh-HHHHHHHHHHHhcccCchhHHhH
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL-DSAVNYFHKTMALKRDDSFATTM  323 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~  323 (342)
                      +|++++|.+.+++++..+|++++++.+++.+...+|+. +.+.+++.+....+|+++.....
T Consensus       214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999999999999999999999999999999999 66778889988899999866544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0553|consensus

Probab=99.67  E-value=2.4e-15  Score=116.26  Aligned_cols=117  Identities=21%  Similarity=0.283  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      +-.-|.-+++.++|++|+..|.+||+++|.+                                    +..|.+.+.+|.+
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------------------------------------AVyycNRAAAy~~  127 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------------------------------------AVYYCNRAAAYSK  127 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------------------------------------chHHHHHHHHHHH
Confidence            4566788888899999999999999999988                                    4788899999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES  335 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  335 (342)
                      +|.++.|++-++.++.++|....+|..||.+|..+|++++|++.|+++++++|++...+..|..+-..+.+..
T Consensus       128 Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  128 LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999999999999988888888877776655

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.66  E-value=6.1e-15  Score=106.71  Aligned_cols=118  Identities=23%  Similarity=0.208  Sum_probs=106.5

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC
Q psy3701          66 LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC  145 (342)
Q Consensus        66 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  145 (342)
                      .+++++..+|++....+.+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701         146 HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI  183 (342)
Q Consensus       146 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  183 (342)
                      +..++.+|.++...|++++|+..++++++.+|++....
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            99999999999999999999999999999999876643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=3.7e-12  Score=102.25  Aligned_cols=257  Identities=15%  Similarity=0.041  Sum_probs=194.4

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC-cH
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL-FL  112 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~  112 (342)
                      .....|-.-...|+|.+|.....+.            -+..+.....+..-+...-+.|+++.+-.++.++-+..++ ..
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rn------------ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l  153 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRN------------AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL  153 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHh------------hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH
Confidence            3334455555667777777666664            3445555556666678888999999999999999998444 35


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC----------------
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA----------------  176 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------  176 (342)
                      ......+.+....|+++.|.....++++..|.++.+......+|...|++.+....+.+.-+..                
T Consensus       154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~  233 (400)
T COG3071         154 AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE  233 (400)
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence            5678889999999999999999999999999999999999999999999998888877665432                


Q ss_pred             --------------------------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701         177 --------------------------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG  230 (342)
Q Consensus       177 --------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                                                ..++.+...++.-+...|++++|.+..+.+++..-+..          +....+
T Consensus       234 glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----------L~~~~~  303 (400)
T COG3071         234 GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----------LCRLIP  303 (400)
T ss_pred             HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----------HHHHHh
Confidence                                      12455566777788899999999999999998766551          111111


Q ss_pred             ----hhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701         231 ----HKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN  305 (342)
Q Consensus       231 ----~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  305 (342)
                          .......+..+. ....|..+.++..+|..+.+.+.+.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+
T Consensus       304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence                111112222222 3345566689999999999999999999999999988774 5567789999999999999999


Q ss_pred             HHHHHHhc
Q psy3701         306 YFHKTMAL  313 (342)
Q Consensus       306 ~~~~al~~  313 (342)
                      .+++++..
T Consensus       383 ~r~e~L~~  390 (400)
T COG3071         383 VRREALLL  390 (400)
T ss_pred             HHHHHHHH
Confidence            99998854

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.63  E-value=2.6e-14  Score=101.44  Aligned_cols=122  Identities=9%  Similarity=-0.009  Sum_probs=101.3

Q ss_pred             HhhC-CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701         173 LSIA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP  251 (342)
Q Consensus       173 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
                      ..+. ++..+..+.+|..++..|++++|...|+-...++|.+                                    ..
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------------------------------------~~   70 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------------------------------------FD   70 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------------------------------HH
Confidence            3455 6677788899999999999999999999999999988                                    58


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc---cCchhHHhHHHHHH
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK---RDDSFATTMLSYVI  328 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~  328 (342)
                      .|++||.++..+|++++|+..|.+++.++|+++..++++|.|+...|+.+.|++.|+.++...   |.+......-...+
T Consensus        71 y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363         71 YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998876   44444444333333


Q ss_pred             HH
Q psy3701         329 EQ  330 (342)
Q Consensus       329 ~~  330 (342)
                      ..
T Consensus       151 ~~  152 (157)
T PRK15363        151 QQ  152 (157)
T ss_pred             HH
Confidence            33

>KOG2376|consensus

Probab=99.63  E-value=2.7e-13  Score=113.66  Aligned_cols=250  Identities=14%  Similarity=0.033  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN  160 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  160 (342)
                      ++.--..+...|+|++|.+...+.+...|++..+....-.+....++|++|+...++-......+ ...+..+.|.++++
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcc
Confidence            33334555677899999999999999999999999888889999999999986554433222221 12267888999999


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701         161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL  240 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (342)
                      ..++|+..++   ..++.+..+....|.+++++|+|++|...|+..++.+.++.++........+...+      .....
T Consensus        94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l------~~~~~  164 (652)
T KOG2376|consen   94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL------QVQLL  164 (652)
T ss_pred             cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh------hHHHH
Confidence            9999999888   45666777888889999999999999999999877665552111111111100000      00011


Q ss_pred             chhc-cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--------C-------chHHHHHHHHHHHHhCChHHHH
Q psy3701         241 GGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP--------M-------KASTFCCIGYIQALTGDLDSAV  304 (342)
Q Consensus       241 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~-------~~~~~~~l~~~~~~~g~~~~A~  304 (342)
                      .... .+....+.+++.+.++...|+|.+|++.+++++.+..        +       -..+...++.++..+|+.++|.
T Consensus       165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            1111 2233568999999999999999999999999954321        1       1246788999999999999999


Q ss_pred             HHHHHHHhcccCchhHHhHHHHHHHHhhhcCCCCCC
Q psy3701         305 NYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG  340 (342)
Q Consensus       305 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~  340 (342)
                      ..|...+..+|.|.........-+-.+..+.+-++|
T Consensus       245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~  280 (652)
T KOG2376|consen  245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDG  280 (652)
T ss_pred             HHHHHHHHhcCCCchHHHHHhcchhhhccccccCch
Confidence            999999999998886666666556666666555553

>KOG1130|consensus

Probab=99.62  E-value=6.5e-15  Score=118.30  Aligned_cols=254  Identities=18%  Similarity=0.242  Sum_probs=188.6

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHhhc----C
Q psy3701          37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARRFLGKATSL----D  108 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~  108 (342)
                      .-|.-+.+.|++...+++|+.++            +...++    ..+|..+|.+|+.+++|++|+++-..=+.+    .
T Consensus        22 lEGERLck~gdcraGv~ff~aA~------------qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg   89 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAAL------------QVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG   89 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHH------------HhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc
Confidence            46888899999999999999974            555554    456788999999999999999886543322    1


Q ss_pred             C--CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------CchHHHHHHHHHhhhCC-------------------
Q psy3701         109 K--LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------CHLPALYVGLECGLTNN-------------------  161 (342)
Q Consensus       109 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~-------------------  161 (342)
                      .  ....+--++|.++-..|.|++|+.+..+-+.+...      ...+++++|.+|...|+                   
T Consensus        90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~  169 (639)
T KOG1130|consen   90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS  169 (639)
T ss_pred             chhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence            1  22345668999999999999999999988776432      45688999999987764                   


Q ss_pred             -HHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         162 -ARLASKFFDLALSIAHE------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       162 -~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                       ++.|.++|..-+++...      ...++-++|..|+-+|+|+.|+..-+.-+.+....+                ... 
T Consensus       170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG----------------DrA-  232 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG----------------DRA-  232 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh----------------hHH-
Confidence             33455555554444322      234577889999999999999999988888776553                111 


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC----CC--chHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA----PM--KASTFCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                                   ..-.++.++|+++.-.|+++.|+++|++.+.+.    ..  .+...+.+|..|.-..++++|+.++.
T Consensus       233 -------------aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~  299 (639)
T KOG1130|consen  233 -------------AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ  299 (639)
T ss_pred             -------------HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence                         113688999999999999999999999987543    22  34567889999999999999999999


Q ss_pred             HHHhcccC------chhHHhHHHHHHHHhh
Q psy3701         309 KTMALKRD------DSFATTMLSYVIEQLI  332 (342)
Q Consensus       309 ~al~~~p~------~~~~~~~l~~~~~~~~  332 (342)
                      +-+.+...      ...+...|+..+..++
T Consensus       300 rHLaIAqeL~DriGe~RacwSLgna~~alg  329 (639)
T KOG1130|consen  300 RHLAIAQELEDRIGELRACWSLGNAFNALG  329 (639)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence            87766322      2345566666665544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.61  E-value=3.4e-14  Score=100.85  Aligned_cols=109  Identities=16%  Similarity=0.092  Sum_probs=100.0

Q ss_pred             HhcC-CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701          71 VDLY-PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA  149 (342)
Q Consensus        71 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  149 (342)
                      .... ++..+..+.+|..++..|++++|.+.|+-....+|.+...|++||.++..+|++++|+..|.+++.++|+++.++
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            4556 778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHhhCCCC
Q psy3701         150 LYVGLECGLTNNARLASKFFDLALSIAHED  179 (342)
Q Consensus       150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (342)
                      ++.|.++...|+.+.|.+.|+.++......
T Consensus       107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        107 WAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999998876433

>KOG0553|consensus

Probab=99.60  E-value=1.9e-14  Score=111.36  Aligned_cols=120  Identities=12%  Similarity=-0.007  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      ++.+..-|.-+.+.++|.+|+..|.+||+++|+++..|.+.+.+|.++|+++.|++.++.++.++|....+|..+|.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            45667779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701         158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT  197 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (342)
                      .+|++.+|++.|+++++++|++...+..|..+-...++..
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999988888877777666655

>PLN03077 Protein ECB2; Provisional

Probab=99.60  E-value=6.4e-13  Score=125.12  Aligned_cols=278  Identities=13%  Similarity=-0.025  Sum_probs=183.4

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--  107 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--  107 (342)
                      .+..++..+...|.+.|++++|...|++.               ...+..+|..+...|.+.|++++|+..|++..+.  
T Consensus       321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---------------~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~  385 (857)
T PLN03077        321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRM---------------ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV  385 (857)
T ss_pred             cchHHHHHHHHHHHhcCCHHHHHHHHhhC---------------CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence            34455556666677777777777777663               1235667888888888888888888888876553  


Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC-CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG-CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      .|+. ..+..+-..+...|++++|.+.+..+.+.... +..++..+...|.+.|++++|.+.|++..+   .+...|..+
T Consensus       386 ~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~m  461 (857)
T PLN03077        386 SPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSI  461 (857)
T ss_pred             CCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHH
Confidence            3543 34555555777888888888888888776533 345666688889999999999999887643   356678888


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh----------------------------------hh
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG----------------------------------HK  232 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~  232 (342)
                      ...+...|++++|+..|++.....+.+  ..............+                                  ..
T Consensus       462 i~~~~~~g~~~eA~~lf~~m~~~~~pd--~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~  539 (857)
T PLN03077        462 IAGLRLNNRCFEALIFFRQMLLTLKPN--SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR  539 (857)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhCCCCC--HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence            888889999999999998887532211  111111111111111                                  11


Q ss_pred             HHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--PMKASTFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                      .+++...+...   ......|..+...|.+.|+.++|++.|++..+..  | +..++..+-..+.+.|+.++|.++|+..
T Consensus       540 ~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M  615 (857)
T PLN03077        540 MNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSM  615 (857)
T ss_pred             HHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence            12233333333   3345678888888888888888888888877643  4 3445666667788888888888888888


Q ss_pred             HhcccC--chhHHhHHHHHHHHhh
Q psy3701         311 MALKRD--DSFATTMLSYVIEQLI  332 (342)
Q Consensus       311 l~~~p~--~~~~~~~l~~~~~~~~  332 (342)
                      .+..+-  +...+..+..++.+.+
T Consensus       616 ~~~~gi~P~~~~y~~lv~~l~r~G  639 (857)
T PLN03077        616 EEKYSITPNLKHYACVVDLLGRAG  639 (857)
T ss_pred             HHHhCCCCchHHHHHHHHHHHhCC
Confidence            744322  3345666666665543

>KOG3785|consensus

Probab=99.59  E-value=1.8e-12  Score=102.55  Aligned_cols=157  Identities=13%  Similarity=0.100  Sum_probs=125.7

Q ss_pred             hhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701          25 QLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKA  104 (342)
Q Consensus        25 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  104 (342)
                      ....+....+...+|.+++..|+|++|...|...            ...+.-+.+.+.+++.+++-+|.|.+|...-.++
T Consensus        50 ~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~------------~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   50 NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFL------------MNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHH------------hccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            3344445567778999999999999999999985            3555557889999999999999999999887765


Q ss_pred             hhc--------------CC------------CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701         105 TSL--------------DK------------LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus       105 ~~~--------------~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      -+.              +.            +..+-...++.+....-.|.+|++.|.+.+..+|+......+++.+|.+
T Consensus       118 ~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK  197 (557)
T KOG3785|consen  118 PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK  197 (557)
T ss_pred             CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh
Confidence            321              11            1122355677888888899999999999999999988888899999999


Q ss_pred             hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701         159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN  193 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (342)
                      +.-++-+.+.+.--++..|+++.+.+..+..+++.
T Consensus       198 lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  198 LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL  232 (557)
T ss_pred             cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence            99999999999999999998887766666655543

>KOG1128|consensus

Probab=99.56  E-value=2.9e-13  Score=116.15  Aligned_cols=203  Identities=10%  Similarity=0.033  Sum_probs=177.7

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL  154 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  154 (342)
                      |.....-..++..+...|-...|+..|++        ...|-....||...|+..+|.....+-++ .|.++..|..+|.
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD  465 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence            44456667899999999999999999998        56677788999999999999999999999 6666888888888


Q ss_pred             HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      +.....-+++|.++.+..      +..+...+|......++|+++.+.++..++++|-.                     
T Consensus       466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---------------------  518 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ---------------------  518 (777)
T ss_pred             hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc---------------------
Confidence            888877778887777654      34466777777888999999999999999999988                     


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                                     ...|+.+|.+..+.++++.|...|..++..+|++..+|.+++..|.+.|+..+|...++++++.+
T Consensus       519 ---------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  519 ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             ---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence                           58999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHhHHHHHH
Q psy3701         315 RDDSFATTMLSYVI  328 (342)
Q Consensus       315 p~~~~~~~~l~~~~  328 (342)
                      -++..+|.+...+.
T Consensus       584 ~~~w~iWENymlvs  597 (777)
T KOG1128|consen  584 YQHWQIWENYMLVS  597 (777)
T ss_pred             CCCCeeeechhhhh
Confidence            87777776655443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.56  E-value=8.9e-12  Score=107.88  Aligned_cols=247  Identities=14%  Similarity=0.058  Sum_probs=171.8

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      +.+.+.....++...|++++|+.++++....-.+........|.++..+|++++|...|+..+..+|++...+..+..+.
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            45677788889999999999999999988888888889999999999999999999999999999999988888777776


Q ss_pred             hhh-----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhH-HHHHHHHHHHhhhhcCccccccchhhHHH---
Q psy3701         157 GLT-----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV-AENCFMEALSKVKQLGGEIIADKWEPLLN---  227 (342)
Q Consensus       157 ~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~---  227 (342)
                      ...     .+.+.-...|++.....|....+.. +...+..-.++.. +..++...+...-.+-    ......++.   
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~KgvPsl----F~~lk~Ly~d~~  157 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRKGVPSL----FSNLKPLYKDPE  157 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhcCCchH----HHHHHHHHcChh
Confidence            333     2567778888888888876543321 1111111122322 2233333333221110    000000000   


Q ss_pred             ---HhhhhHHHHHHHhchh----------ccCCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701         228 ---NLGHKAEDKVKQLGGE----------IIADK-WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI  293 (342)
Q Consensus       228 ---~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  293 (342)
                         .+..............          ..+|. ...+++.++..|...|++++|+++++++|+..|..++.+...|.+
T Consensus       158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari  237 (517)
T PF12569_consen  158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI  237 (517)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence               1111111111111110          11111 234668899999999999999999999999999999999999999


Q ss_pred             HHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         294 QALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       294 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      +...|++.+|.++++.+..+++.|.......+.-+
T Consensus       238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            99999999999999999999999886655544433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.56  E-value=1.2e-12  Score=107.82  Aligned_cols=153  Identities=18%  Similarity=0.113  Sum_probs=132.4

Q ss_pred             CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccch
Q psy3701         143 KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKW  222 (342)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  222 (342)
                      |....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++...|..         
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~---------  373 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS---------  373 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---------
Confidence            66777888889999999999999999999999999999999999999999999999999999999999988         


Q ss_pred             hhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH
Q psy3701         223 EPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS  302 (342)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  302 (342)
                                                 ..++.++|.++.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+
T Consensus       374 ---------------------------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~  426 (484)
T COG4783         374 ---------------------------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE  426 (484)
T ss_pred             ---------------------------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence                                       37889999999999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         303 AVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       303 A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      |...+.+...+..+...+...+....++.
T Consensus       427 a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         427 ALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            87777777777766666666666655554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.52  E-value=4.4e-13  Score=112.24  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      +...|..++..|+|++|+..|+++++.+|.+                                    ..++.++|.++..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------------------------------------~~a~~~~a~~~~~   48 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------------------------------------AELYADRAQANIK   48 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHH
Confidence            4567888999999999999999999999998                                    5899999999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      .|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+...+.+
T Consensus        49 ~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         49 LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999877754

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.51  E-value=7.1e-13  Score=107.07  Aligned_cols=239  Identities=11%  Similarity=-0.019  Sum_probs=171.1

Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhh
Q psy3701          40 RVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG  119 (342)
Q Consensus        40 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  119 (342)
                      +-++-.|+|.+++.-++..            ....+...+....+.+++..+|+++..+.-....   .+....+...++
T Consensus         9 rn~fy~G~Y~~~i~e~~~~------------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la   73 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEASLK------------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLA   73 (290)
T ss_dssp             HHHHCTT-HHHHCHHHHCH------------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhcc------------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHH
Confidence            3455678888888666531            1222345667788999999999988776555432   233345566667


Q ss_pred             hHHHhhccHHHHHHHHHHHhccCCC--CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701         120 HSFAVENEHDQAMAAYFNAFNLFKG--CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT  197 (342)
Q Consensus       120 ~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (342)
                      ..+...++.+.++..++..+.....  ++......|.++...|++++|++.+.+.     ++.+.......++...+|++
T Consensus        74 ~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~d  148 (290)
T PF04733_consen   74 EYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPD  148 (290)
T ss_dssp             HHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HH
T ss_pred             HHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHH
Confidence            6666656677777777766544322  3445556788899999999999888764     56788888899999999999


Q ss_pred             HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh--hHHHHHHHHHH
Q psy3701         198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK--KYEEALEFHKQ  275 (342)
Q Consensus       198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~  275 (342)
                      .|.+.++++-+.+++.                                    ..+....+++....|  ++.+|...|++
T Consensus       149 lA~k~l~~~~~~~eD~------------------------------------~l~qLa~awv~l~~g~e~~~~A~y~f~E  192 (290)
T PF04733_consen  149 LAEKELKNMQQIDEDS------------------------------------ILTQLAEAWVNLATGGEKYQDAFYIFEE  192 (290)
T ss_dssp             HHHHHHHHHHCCSCCH------------------------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcH------------------------------------HHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            9999999987776555                                    233333344444455  68999999999


Q ss_pred             HHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhc
Q psy3701         276 ALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEE  334 (342)
Q Consensus       276 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  334 (342)
                      ..+..+.++..+..++.+...+|++++|...+++++..+|+++.+..++..+....++.
T Consensus       193 l~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  193 LSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            88887888999999999999999999999999999999999999999887776655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.51  E-value=1.1e-10  Score=93.99  Aligned_cols=252  Identities=15%  Similarity=0.064  Sum_probs=185.4

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-chHHHHHHHHHhhhC
Q psy3701          82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-HLPALYVGLECGLTN  160 (342)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~  160 (342)
                      ..-|..-...|+|.+|.+...+.-+..+...-.+..-+.+...+|+++.+-.+..++-+..+++ .......+.+....|
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence            3446666778999999999999888888877788888899999999999999999999995543 445667889999999


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc---cccchhhHHHHhhhh--HHH
Q psy3701         161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI---IADKWEPLLNNLGHK--AED  235 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~  235 (342)
                      +++.|.....++++..|.++.+......+|...|+|.+...++.+.-+..--+..+.   ...+|..++......  .+.
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g  247 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG  247 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence            999999999999999999999999999999999999999998888766443322000   011111111111100  001


Q ss_pred             HHHHhchhc-cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------------------------------hCCCc
Q psy3701         236 KVKQLGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV-------------------------------VAPMK  283 (342)
Q Consensus       236 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------------------------------~~~~~  283 (342)
                      ......... .....+.+...++.-+.+.|+.++|.+..+.+++                               ..|++
T Consensus       248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~  327 (400)
T COG3071         248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPED  327 (400)
T ss_pred             HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence            000111111 1112245566667777788888888777776663                               45777


Q ss_pred             hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhc
Q psy3701         284 ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEE  334 (342)
Q Consensus       284 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  334 (342)
                      +..+..+|..+.+.+.|.+|..+|+.++...|+ ...+..++.++.+.++.
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~  377 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEP  377 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCCh
Confidence            889999999999999999999999999999884 45677888888877653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.48  E-value=1.1e-12  Score=109.89  Aligned_cols=113  Identities=13%  Similarity=-0.016  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN  160 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  160 (342)
                      +...|...+..|++++|+..|+++++++|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45668888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701         161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQN  193 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (342)
                      ++++|+..|++++.++|+++.+...++.+....
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999988888887776555

>KOG2376|consensus

Probab=99.47  E-value=2e-10  Score=96.86  Aligned_cols=208  Identities=13%  Similarity=0.010  Sum_probs=153.8

Q ss_pred             hHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHh
Q psy3701          39 GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMY  118 (342)
Q Consensus        39 g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  118 (342)
                      -..+...|+|++|.....+            ++...|++..++...-.+..+.++|++|+...++-......+. ..+..
T Consensus        19 ln~~~~~~e~e~a~k~~~K------------il~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEK   85 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANK------------ILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEK   85 (652)
T ss_pred             HHHhccchHHHHHHHHHHH------------HHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHH
Confidence            3455567888888888877            4688899999999999999999999999966554332222221 22678


Q ss_pred             hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--------------------
Q psy3701         119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE--------------------  178 (342)
Q Consensus       119 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------  178 (342)
                      +.|.++.+..++|+..+.   ..++.+.......|.+++++|+|++|..+|+...+.+.+                    
T Consensus        86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~  162 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ  162 (652)
T ss_pred             HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence            889999999999999988   445555667778899999999999999999988654421                    


Q ss_pred             -----------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCC
Q psy3701         179 -----------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD  247 (342)
Q Consensus       179 -----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (342)
                                 +.+..++.+.++...|+|.+|++.+++++++....-             ..+...+        .....
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l-------------~~~d~~e--------Eeie~  221 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKL-------------EDEDTNE--------EEIEE  221 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhh-------------cccccch--------hhHHH
Confidence                       345688999999999999999999999977665431             0000000        00111


Q ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Q psy3701         248 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK  283 (342)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  283 (342)
                      ....+...++.++..+|+.++|...|...++.+|.+
T Consensus       222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence            124577788999999999999999999998877644

>KOG3785|consensus

Probab=99.47  E-value=2.2e-11  Score=96.48  Aligned_cols=161  Identities=11%  Similarity=-0.030  Sum_probs=130.3

Q ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701          42 YEALENRALAADCYKGALLADLFKLAHELVDLYPD-SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH  120 (342)
Q Consensus        42 ~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~  120 (342)
                      +....+|..|+.+++-.+            ..+.+ ....-..+|.|++.+|+|++|...|.-+.+.+.-+.+.+.+++-
T Consensus        32 fls~rDytGAislLefk~------------~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAc   99 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKL------------NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLAC   99 (557)
T ss_pred             HHhcccchhHHHHHHHhh------------ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHH
Confidence            345678888988888753            22222 23566778999999999999999999999987778899999999


Q ss_pred             HHHhhccHHHHHHHHHHHhcc--------------CC------------CCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701         121 SFAVENEHDQAMAAYFNAFNL--------------FK------------GCHLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       121 ~~~~~g~~~~A~~~~~~al~~--------------~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      ++.-.|.|.+|...-.++-+.              +.            +..+-...++.+.+..-.|++|++.|.+.+.
T Consensus       100 c~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  100 CKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999887766432              11            1122334567777777789999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      .+|+....-..++.+|+++.-|+-+.+.+.-.++..|+++
T Consensus       180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt  219 (557)
T KOG3785|consen  180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST  219 (557)
T ss_pred             cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence            9998888888999999999999999999999999999884

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.47  E-value=7.9e-11  Score=92.96  Aligned_cols=184  Identities=11%  Similarity=-0.089  Sum_probs=113.3

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH---HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA---WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG  153 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  153 (342)
                      ++..++..|..++..|++++|+..|++++...|..+.+   .+.+|.++...+++++|+..+++.++..|+++.      
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~------  104 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------  104 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc------
Confidence            34445555555566666666666666666655554332   255555555555555555555555555555332      


Q ss_pred             HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc------------------ChhHHHHHHHHHHHhhhhcCc
Q psy3701         154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH------------------NYTVAENCFMEALSKVKQLGG  215 (342)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~A~~~~~~al~~~~~~~~  215 (342)
                                               .+.+++.+|.++...+                  ...+|+..|++.++..|++. 
T Consensus       105 -------------------------~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-  158 (243)
T PRK10866        105 -------------------------IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-  158 (243)
T ss_pred             -------------------------hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-
Confidence                                     1233444444432222                  13467788888888888773 


Q ss_pred             cccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHH
Q psy3701         216 EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGY  292 (342)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~  292 (342)
                           ....+...+......             .+.--..+|..|.+.|.|..|+.-++.+++..|+.+   +++..++.
T Consensus       159 -----ya~~A~~rl~~l~~~-------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~  220 (243)
T PRK10866        159 -----YTTDATKRLVFLKDR-------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN  220 (243)
T ss_pred             -----hHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence                 000011111111000             133445789999999999999999999999988764   78899999


Q ss_pred             HHHHhCChHHHHHHHHHH
Q psy3701         293 IQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       293 ~~~~~g~~~~A~~~~~~a  310 (342)
                      .|..+|..++|.......
T Consensus       221 ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        221 AYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHcCChHHHHHHHHHH
Confidence            999999999998876543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.44  E-value=7.5e-11  Score=91.00  Aligned_cols=186  Identities=16%  Similarity=0.055  Sum_probs=114.6

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch---HHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL---PAL  150 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~  150 (342)
                      ++..++..|...+..|++.+|+..|++.+...|..   +.+.+.+|.++...|++++|+..+++.++..|+++.   +++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            35667777777777777777777777777766654   456777777777777777777777777777776543   334


Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG  230 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                      .+|.++....         ...+              ......+...+|+..|+..+...|+++    .  ...+...+.
T Consensus        84 ~~g~~~~~~~---------~~~~--------------~~~~D~~~~~~A~~~~~~li~~yP~S~----y--~~~A~~~l~  134 (203)
T PF13525_consen   84 MLGLSYYKQI---------PGIL--------------RSDRDQTSTRKAIEEFEELIKRYPNSE----Y--AEEAKKRLA  134 (203)
T ss_dssp             HHHHHHHHHH---------HHHH---------------TT---HHHHHHHHHHHHHHHH-TTST----T--HHHHHHHHH
T ss_pred             HHHHHHHHhC---------ccch--------------hcccChHHHHHHHHHHHHHHHHCcCch----H--HHHHHHHHH
Confidence            4444333220         0000              112233455689999999999999885    0  001111111


Q ss_pred             hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCChHHHH
Q psy3701         231 HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGDLDSAV  304 (342)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A~  304 (342)
                      ......             +.--..+|..|.+.|.+..|+..++.+++..|+..   .++..++.++.++|..+.|.
T Consensus       135 ~l~~~l-------------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  135 ELRNRL-------------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHH-------------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHH-------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            111111             34456689999999999999999999999999875   67888999999999988554

>KOG4340|consensus

Probab=99.43  E-value=2e-11  Score=94.54  Aligned_cols=217  Identities=14%  Similarity=0.055  Sum_probs=172.2

Q ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHH
Q psy3701          43 EALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF  122 (342)
Q Consensus        43 ~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  122 (342)
                      ....+|+.|++++..            -.+..|.+...+..+|.||+...++..|..+|++.-...|.........+..+
T Consensus        21 I~d~ry~DaI~~l~s------------~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   21 IRDARYADAIQLLGS------------ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL   88 (459)
T ss_pred             HHHhhHHHHHHHHHH------------HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            445667777777766            45889999999999999999999999999999999999999998888899999


Q ss_pred             HhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHH
Q psy3701         123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENC  202 (342)
Q Consensus       123 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  202 (342)
                      ...+.+.+|+...........-.......-+-+.+..+++..+....++.-.  .++.....+.|.+.++.|+++.|++-
T Consensus        89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqk  166 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQK  166 (459)
T ss_pred             HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHH
Confidence            9999999999988776554221223334456667777888887776665321  25677889999999999999999999


Q ss_pred             HHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Q psy3701         203 FMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV---  279 (342)
Q Consensus       203 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  279 (342)
                      |+.+++...-++                                    .+-++++.+..+.|+++.|+++..+.++.   
T Consensus       167 FqaAlqvsGyqp------------------------------------llAYniALaHy~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  167 FQAALQVSGYQP------------------------------------LLAYNLALAHYSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             HHHHHhhcCCCc------------------------------------hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence            999999887763                                    67788999999999999999988887754   


Q ss_pred             -CCCc-------------------------hHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701         280 -APMK-------------------------ASTFCCIGYIQALTGDLDSAVNYFHK  309 (342)
Q Consensus       280 -~~~~-------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~  309 (342)
                       .|..                         ..++...+.++.+.|+++.|.+.+..
T Consensus       211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD  266 (459)
T KOG4340|consen  211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD  266 (459)
T ss_pred             cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence             2321                         23455567788899999998877654

>KOG1915|consensus

Probab=99.42  E-value=4.7e-09  Score=86.65  Aligned_cols=282  Identities=12%  Similarity=0.091  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD  108 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  108 (342)
                      .++...|..-|+.-..++++..|.+.|+.++            ..+..+...|...+.+-++......|...+++|+.+-
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERAL------------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l  137 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERAL------------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL  137 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence            3455666677788888888888988888875            5555555666666666666666666666666666666


Q ss_pred             CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC--------------------------------chHHHHHHHHH
Q psy3701         109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC--------------------------------HLPALYVGLEC  156 (342)
Q Consensus       109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------~~~~~~l~~~~  156 (342)
                      |.....|+.....-...|+...|.+.|++-++..|+.                                ...|...+..-
T Consensus       138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE  217 (677)
T KOG1915|consen  138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFE  217 (677)
T ss_pred             chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHH
Confidence            6655556555555555566666666666665555541                                23344444444


Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh-
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK-  232 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-  232 (342)
                      .+.|+..-|..+|+++++...++.   .++...|..-..++.++.|..+|+-++..-|.+........+...-...|+. 
T Consensus       218 ~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~  297 (677)
T KOG1915|consen  218 EKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE  297 (677)
T ss_pred             HhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence            555555555555555555443332   1233334444445566666666666666665553111111111111112211 


Q ss_pred             -HH------HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH---------HHHHHHHH-HH
Q psy3701         233 -AE------DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS---------TFCCIGYI-QA  295 (342)
Q Consensus       233 -~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~-~~  295 (342)
                       .+      ...+.-.....+|...++|+.+-.+-...|+.+.-.+.|++|+..-|....         .|.+.+.. -.
T Consensus       298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl  377 (677)
T KOG1915|consen  298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL  377 (677)
T ss_pred             hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence             11      111112224567777889999988888899999999999999987775321         22222221 13


Q ss_pred             HhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701         296 LTGDLDSAVNYFHKTMALKRDDSFATT  322 (342)
Q Consensus       296 ~~g~~~~A~~~~~~al~~~p~~~~~~~  322 (342)
                      ...+.+.+.+.|+.++++-|...+...
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFa  404 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFA  404 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHH
Confidence            568899999999999999887665433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.42  E-value=8e-11  Score=86.99  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      +..++..|..|-..|-+.-|.-.|.+++.+.|+.++++..+|.-+...|+++.|.+.|...++++|....+..+.|..+.
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            34445555555555655666666666666666666666666666666666666666666666666666556666666666


Q ss_pred             hhCCHHHHHHHHHHHHhhCCCCh
Q psy3701         158 LTNNARLASKFFDLALSIAHEDP  180 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~  180 (342)
                      --|++.-|.+-+.+-.+.+|++|
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCCh
Confidence            66666666666666666666555

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.41  E-value=6.8e-10  Score=105.92  Aligned_cols=275  Identities=12%  Similarity=-0.005  Sum_probs=191.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-----SAIAWYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      ..+....|..+...|++++|...+++++            ...|.     ...+...+|.++...|++++|...+++++.
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~  519 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELAL------------AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQ  519 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHH------------hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444457788888999999999998864            32222     134567889999999999999999999987


Q ss_pred             cCCCc------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC--------CchHHHHHHHHHhhhCCHHHHHHHHHHH
Q psy3701         107 LDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG--------CHLPALYVGLECGLTNNARLASKFFDLA  172 (342)
Q Consensus       107 ~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~  172 (342)
                      .....      ..++..+|.++...|++++|...+++++.....        ....+..+|.++...|++++|...++++
T Consensus       520 ~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  599 (903)
T PRK04841        520 MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG  599 (903)
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            53321      245677899999999999999999999886322        1123446788899999999999999998


Q ss_pred             HhhCCC-----ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh-----hHHHHhhhhHHHHHHHhch
Q psy3701         173 LSIAHE-----DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE-----PLLNNLGHKAEDKVKQLGG  242 (342)
Q Consensus       173 ~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  242 (342)
                      +.....     ....+..+|.++...|++++|...+.++..+.+............     ..+...+ ....+......
T Consensus       600 l~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~l~~  678 (903)
T PRK04841        600 LEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG-DKEAAANWLRQ  678 (903)
T ss_pred             HHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC-CHHHHHHHHHh
Confidence            875332     244566789999999999999999999988654431000000000     0001111 11111111111


Q ss_pred             hc-c--CC--CChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC------CchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701         243 EI-I--AD--KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MKASTFCCIGYIQALTGDLDSAVNYFHKTM  311 (342)
Q Consensus       243 ~~-~--~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  311 (342)
                      .. .  ..  .....+..++.++...|++++|...+++++....      ....++..+|.++...|+.++|...+.+++
T Consensus       679 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al  758 (903)
T PRK04841        679 APKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL  758 (903)
T ss_pred             cCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11 0  00  0112356789999999999999999999987632      234578889999999999999999999999


Q ss_pred             hcccCchh
Q psy3701         312 ALKRDDSF  319 (342)
Q Consensus       312 ~~~p~~~~  319 (342)
                      ++......
T Consensus       759 ~la~~~g~  766 (903)
T PRK04841        759 KLANRTGF  766 (903)
T ss_pred             HHhCccch
Confidence            98765544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.41  E-value=1.2e-10  Score=94.90  Aligned_cols=194  Identities=16%  Similarity=0.127  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCC------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKL------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL  154 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  154 (342)
                      +...|..|...+++++|..+|.++....-.      -...+...+.++... ++++|+.++++++.              
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~--------------  102 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE--------------  102 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH--------------
Confidence            344467777778888888888777543211      012233334443333 55555555555542              


Q ss_pred             HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701         155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN-HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA  233 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
                      +|...|++..|-              ..+..+|.+|... |++++|+.+|+++++......                   
T Consensus       103 ~y~~~G~~~~aA--------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-------------------  149 (282)
T PF14938_consen  103 IYREAGRFSQAA--------------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-------------------  149 (282)
T ss_dssp             HHHHCT-HHHHH--------------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------------------
T ss_pred             HHHhcCcHHHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-------------------
Confidence            334444444443              3456778888888 999999999999999876553                   


Q ss_pred             HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHHhCChHHHHHH
Q psy3701         234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-------ASTFCCIGYIQALTGDLDSAVNY  306 (342)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~  306 (342)
                                 ........+..+|.++.+.|+|++|++.|++.....-++       ...++..+.|+...|+...|...
T Consensus       150 -----------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~  218 (282)
T PF14938_consen  150 -----------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA  218 (282)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             -----------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                       001114677889999999999999999999998754322       13456788899999999999999


Q ss_pred             HHHHHhcccCchhH--HhHHHHHHHHhhh
Q psy3701         307 FHKTMALKRDDSFA--TTMLSYVIEQLIE  333 (342)
Q Consensus       307 ~~~al~~~p~~~~~--~~~l~~~~~~~~~  333 (342)
                      +++....+|.....  ...+..+++.+.+
T Consensus       219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~  247 (282)
T PF14938_consen  219 LERYCSQDPSFASSREYKFLEDLLEAYEE  247 (282)
T ss_dssp             HHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence            99999999976543  3445555555443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.41  E-value=1.2e-11  Score=87.31  Aligned_cols=111  Identities=15%  Similarity=0.102  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      +..++.+|..+...|++++|+..|++++...|+++                                 ....+++.+|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~   48 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---------------------------------YAPNAHYWLGEA   48 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------------------------------ccHHHHHHHHHH
Confidence            34567788888888888888888888888777652                                 113577788888


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhH
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM  323 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  323 (342)
                      +...|++++|+..|++++...|++   +.++..+|.++...|++++|..+++++++..|++..+...
T Consensus        49 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        49 YYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            888888888888888888887764   5678888888888888888888888888888887765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=9.4e-12  Score=97.24  Aligned_cols=121  Identities=14%  Similarity=0.113  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC---CHHHHHHHHH
Q psy3701          94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN---NARLASKFFD  170 (342)
Q Consensus        94 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~  170 (342)
                      .+.-+.-++.-+..+|++++.|..||.+|+.+|+++.|...|.+++++.|+++..+..+|.++..+.   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3455666777788899999999999999999999999999999999999999999999999877664   5678999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      +++..+|.+..+.+.+|..++..|+|.+|+..++..++..|.+.
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999988773

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.40  E-value=2.9e-12  Score=80.63  Aligned_cols=66  Identities=27%  Similarity=0.485  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC-ChHHHHHHHHHHHhccc
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG-DLDSAVNYFHKTMALKR  315 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p  315 (342)
                      +..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5789999999999999999999999999999999999999999999999 79999999999999998

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.40  E-value=1.3e-10  Score=89.65  Aligned_cols=159  Identities=15%  Similarity=0.127  Sum_probs=124.6

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD---SAIAWYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      .+...++..|...+..|++.+|+..|++.            +...|.   .+.+.+.+|.+++..|++++|+..+++.+.
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l------------~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKL------------IDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHH------------HHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35667788999999999999999999995            465554   578999999999999999999999999999


Q ss_pred             cCCCcH---HHHHHhhhHHHhhc-----------cHHHHHHHHHHHhccCCCCchHH-----------------HHHHHH
Q psy3701         107 LDKLFL---PAWLMYGHSFAVEN-----------EHDQAMAAYFNAFNLFKGCHLPA-----------------LYVGLE  155 (342)
Q Consensus       107 ~~~~~~---~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~-----------------~~l~~~  155 (342)
                      ..|+++   .+++.+|.++....           ...+|+..|+..+...|++..+-                 +.+|..
T Consensus        71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~  150 (203)
T PF13525_consen   71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF  150 (203)
T ss_dssp             H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998864   57888888866543           34589999999999999976432                 246788


Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhcChhHHH
Q psy3701         156 CGLTNNARLASKFFDLALSIAHEDP---FVIHEMGVIAYQNHNYTVAE  200 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~  200 (342)
                      |.+.|.+..|+..++.+++..|+.+   .++..++..+..+|..+.|.
T Consensus       151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            9999999999999999999999875   46788889999999887443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=6.4e-11  Score=92.66  Aligned_cols=134  Identities=14%  Similarity=0.092  Sum_probs=113.8

Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701         161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL  240 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (342)
                      ..+.-+.-++.-+..+|+|..-|..+|.+|+.+|++..|...|.+++++.|++                           
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n---------------------------  189 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN---------------------------  189 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC---------------------------
Confidence            35566667788888999999999999999999999999999999999999999                           


Q ss_pred             chhccCCCChHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701         241 GGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  317 (342)
                               ++.+..+|.++..+.   ...++...+++++..+|.+..+.+.+|..++..|++.+|...++..++..|.+
T Consensus       190 ---------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         190 ---------PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             ---------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence                     588888888886553   45689999999999999999999999999999999999999999999998877


Q ss_pred             hhHHhHHHHHHHH
Q psy3701         318 SFATTMLSYVIEQ  330 (342)
Q Consensus       318 ~~~~~~l~~~~~~  330 (342)
                      ..-...+......
T Consensus       261 ~~rr~~ie~~ia~  273 (287)
T COG4235         261 DPRRSLIERSIAR  273 (287)
T ss_pred             CchHHHHHHHHHH
Confidence            6555555444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.38  E-value=1.7e-11  Score=86.51  Aligned_cols=106  Identities=10%  Similarity=0.047  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---chHHHH
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HLPALY  151 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~  151 (342)
                      +..++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..+++++...|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4567888888888888888888888888887765   4678888888888888888888888888887774   456777


Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHEDPFVI  183 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  183 (342)
                      +|.++...|++++|+..+++++...|++..+.
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            88888888888888888888888888776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.38  E-value=2.1e-10  Score=90.55  Aligned_cols=184  Identities=11%  Similarity=0.005  Sum_probs=136.5

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIA---WYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      .....++..|......|++++|+..|++.            +...|..+.+   .+.+|.++++.+++++|+..+++.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l------------~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~   97 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEAL------------DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR   97 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            35566778888888899999999999884            5888887654   48999999999999999999999999


Q ss_pred             cCCCc---HHHHHHhhhHHHhhc------------------cHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHH
Q psy3701         107 LDKLF---LPAWLMYGHSFAVEN------------------EHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLA  165 (342)
Q Consensus       107 ~~~~~---~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  165 (342)
                      .+|++   +.+++.+|.++...+                  ...+|+..+++.++..|++..+              .+|
T Consensus        98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A  163 (243)
T PRK10866         98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDA  163 (243)
T ss_pred             hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHH
Confidence            99887   456888887754433                  1346778888888888875432              111


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701         166 SKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII  245 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
                      ...+..+-.   .-..--...|..|.+.|+|..|+.-++.+++..|+.+                               
T Consensus       164 ~~rl~~l~~---~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~-------------------------------  209 (243)
T PRK10866        164 TKRLVFLKD---RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ-------------------------------  209 (243)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc-------------------------------
Confidence            111111110   0112234678889999999999999999999888774                               


Q ss_pred             CCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy3701         246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQ  275 (342)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  275 (342)
                        ...+++..++.+|..+|..++|......
T Consensus       210 --~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        210 --ATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             --hHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence              2357888899999999999998876654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.37  E-value=2.6e-12  Score=80.84  Aligned_cols=67  Identities=25%  Similarity=0.420  Sum_probs=58.0

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc-cHHHHHHHHHHHhccCC
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN-EHDQAMAAYFNAFNLFK  143 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~  143 (342)
                      ++.+|..+|.+++..|++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            57788888888888888888888888888888888888888888888888 78888888888888876

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.36  E-value=1.5e-10  Score=85.55  Aligned_cols=202  Identities=14%  Similarity=0.088  Sum_probs=131.9

Q ss_pred             hccHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHH
Q psy3701          45 LENRALAADCYKGAL-------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM  117 (342)
Q Consensus        45 ~~~~~~A~~~~~~~~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  117 (342)
                      ..+-++|.-+|+++.       +.-|..-+.+.+.+.|.-++++..+|..+...|+++.|.+.|+..++++|....+..+
T Consensus        59 l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN  138 (297)
T COG4785          59 LTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN  138 (297)
T ss_pred             CChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence            345567777777764       4556666778888899999999999999999999999999999999999998888889


Q ss_pred             hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH-HHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701         118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD-LALSIAHEDPFVIHEMGVIAYQNHNY  196 (342)
Q Consensus       118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (342)
                      .|..+..-|++.-|.+.+.+..+.+|++|.--.++-..-. .-++.+|..-+. ++...+ +....|...+..   .|+.
T Consensus       139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~-k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~~y---Lgki  213 (297)
T COG4785         139 RGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ-KLDPKQAKTNLKQRAEKSD-KEQWGWNIVEFY---LGKI  213 (297)
T ss_pred             cceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh-hCCHHHHHHHHHHHHHhcc-HhhhhHHHHHHH---Hhhc
Confidence            9988888999999999999888888887754433322222 234555554443 333322 223333332222   2222


Q ss_pred             hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701         197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA  276 (342)
Q Consensus       197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (342)
                      .+ ...++++..-..++.             .                ......++++.+|..+...|+.++|...|+-+
T Consensus       214 S~-e~l~~~~~a~a~~n~-------------~----------------~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa  263 (297)
T COG4785         214 SE-ETLMERLKADATDNT-------------S----------------LAEHLTETYFYLGKYYLSLGDLDEATALFKLA  263 (297)
T ss_pred             cH-HHHHHHHHhhccchH-------------H----------------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            11 223333333222220             0                00111467788888888888888888888887


Q ss_pred             HhhCC
Q psy3701         277 LVVAP  281 (342)
Q Consensus       277 l~~~~  281 (342)
                      +..+-
T Consensus       264 iannV  268 (297)
T COG4785         264 VANNV  268 (297)
T ss_pred             HHHhH
Confidence            76543

>KOG1915|consensus

Probab=99.36  E-value=7.5e-10  Score=91.21  Aligned_cols=211  Identities=9%  Similarity=0.032  Sum_probs=187.7

Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701          70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA  149 (342)
Q Consensus        70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  149 (342)
                      .+..+.-+...|...|..-..++++..|...|++|+..+..+...|...+.+-+.......|...+.+++.+-|.....|
T Consensus        65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW  144 (677)
T KOG1915|consen   65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW  144 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence            34556677889999999999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh
Q psy3701         150 LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL  229 (342)
Q Consensus       150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      +....+-..+|+...|.++|++-+...| +..+|......-.+-+..+.|..+|++.+-..|+.                
T Consensus       145 yKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v----------------  207 (677)
T KOG1915|consen  145 YKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKV----------------  207 (677)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccH----------------
Confidence            8888888899999999999999999999 46678888888888899999999999999988876                


Q ss_pred             hhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCChHHHHHH
Q psy3701         230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGDLDSAVNY  306 (342)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~  306 (342)
                                           ..|...+..-.+.|+..-|...|++|++.-.++.   ......+..-..+..++.|.-.
T Consensus       208 ---------------------~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i  266 (677)
T KOG1915|consen  208 ---------------------SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI  266 (677)
T ss_pred             ---------------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 6899999999999999999999999998755433   3455566666788899999999


Q ss_pred             HHHHHhcccCch
Q psy3701         307 FHKTMALKRDDS  318 (342)
Q Consensus       307 ~~~al~~~p~~~  318 (342)
                      |+-++..-|.+.
T Consensus       267 ykyAld~~pk~r  278 (677)
T KOG1915|consen  267 YKYALDHIPKGR  278 (677)
T ss_pred             HHHHHHhcCccc
Confidence            999999999873

>PRK11906 transcriptional regulator; Provisional

Probab=99.36  E-value=1.2e-10  Score=96.85  Aligned_cols=133  Identities=11%  Similarity=0.062  Sum_probs=120.7

Q ss_pred             HHHHHHHHHhC---ChHHHHHHHHHHh---hcCCCcHHHHHHhhhHHHhh---------ccHHHHHHHHHHHhccCCCCc
Q psy3701          82 YAVGCYYYLIG---RSDPARRFLGKAT---SLDKLFLPAWLMYGHSFAVE---------NEHDQAMAAYFNAFNLFKGCH  146 (342)
Q Consensus        82 ~~l~~~~~~~~---~~~~A~~~~~~a~---~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~  146 (342)
                      +..|...+..+   ..+.|..+|.+++   .++|....++..++.++...         .+..+|.+..+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            66777776655   4578999999999   99999999999999888764         345689999999999999999


Q ss_pred             hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      .++..+|.+....++++.|...|++++.++|+.+.+|+..|.+....|+.++|+..++++++++|...
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999873

>KOG4340|consensus

Probab=99.34  E-value=4.4e-11  Score=92.71  Aligned_cols=187  Identities=16%  Similarity=0.049  Sum_probs=155.7

Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF  168 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  168 (342)
                      .+..+|..|++++..-.+.+|.+...+..+|.||....++..|..+|++.-...|......++.+..+++.+.+.+|+.+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999888888899999999999999998


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC
Q psy3701         169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK  248 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
                      .........-...+...-+.+.+..+++..+....++.    |.                                  ..
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~----------------------------------en  142 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PS----------------------------------EN  142 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc----cC----------------------------------CC
Confidence            87765432222334455566677777777776665542    31                                  11


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      .+....+.|.+..+.|++++|++-|+.+++...-++..-++++.++.+.|+++.|+++..+.++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            25788899999999999999999999999999888989999999999999999999988777653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.34  E-value=8.5e-12  Score=77.36  Aligned_cols=65  Identities=25%  Similarity=0.419  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      +.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999985

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.34  E-value=4.4e-11  Score=80.75  Aligned_cols=99  Identities=26%  Similarity=0.361  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701         182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR  261 (342)
Q Consensus       182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (342)
                      +++.+|.++...|++++|+..++++++..|.+                                    ..++..+|.++.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~   45 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------------------------------------ADAYYNLAAAYY   45 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------------------------------------HHHHHHHHHHHH
Confidence            46789999999999999999999999998887                                    478899999999


Q ss_pred             HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       262 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                      ..|++++|+..+++++...|.+..++..+|.++...|++++|...+.++++..|+
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          46 KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999999999999999999999998874

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.33  E-value=3.5e-11  Score=81.23  Aligned_cols=98  Identities=21%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT  159 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  159 (342)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+...+..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            35566666666666666666666666666666666666666666666666666666666666666555555666666666


Q ss_pred             CCHHHHHHHHHHHHhhCC
Q psy3701         160 NNARLASKFFDLALSIAH  177 (342)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~  177 (342)
                      |++++|...+.+++...|
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            666666666666555544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.33  E-value=1.7e-10  Score=100.65  Aligned_cols=142  Identities=11%  Similarity=0.026  Sum_probs=118.6

Q ss_pred             hcCCCcHHHH--HHHHHHHHHhCC---hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh--------ccHHHHHHHHHHH
Q psy3701          72 DLYPDSAIAW--YAVGCYYYLIGR---SDPARRFLGKATSLDKLFLPAWLMYGHSFAVE--------NEHDQAMAAYFNA  138 (342)
Q Consensus        72 ~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a  138 (342)
                      ...|.++.+|  +..|..+...++   ..+|+.+|+++++++|++..++..++.++...        ++...+....+++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3456666655  556777766554   78999999999999999999999888877654        2345667777776


Q ss_pred             hcc--CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         139 FNL--FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       139 l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      +..  +|..+.++..+|......|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|..+
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            664  666777888899999999999999999999999999 588999999999999999999999999999999985

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.33  E-value=6.2e-11  Score=89.21  Aligned_cols=67  Identities=27%  Similarity=0.454  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC--------------hHHHHHHHHHHHhcccCc
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD--------------LDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~al~~~p~~  317 (342)
                      ++..+|.++...|++++|+..+++++...|.+...+..+|.++...|+              +++|.+++++++..+|++
T Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            444444444445555555555555554444444444444444444443              678889999999999887


Q ss_pred             h
Q psy3701         318 S  318 (342)
Q Consensus       318 ~  318 (342)
                      .
T Consensus       154 ~  154 (172)
T PRK02603        154 Y  154 (172)
T ss_pred             H
Confidence            3

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.33  E-value=4.1e-11  Score=90.17  Aligned_cols=98  Identities=17%  Similarity=0.077  Sum_probs=84.1

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL  150 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  150 (342)
                      .+..+.+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++...|.+...+.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            44567789999999999999999999999999887653   468999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCHHHHHHHHHH
Q psy3701         151 YVGLECGLTNNARLASKFFDL  171 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~  171 (342)
                      .+|.++...|+...+...+++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~  131 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDE  131 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHH
Confidence            999999998885554444433

>PRK15331 chaperone protein SicA; Provisional

Probab=99.32  E-value=1.1e-10  Score=83.47  Aligned_cols=110  Identities=23%  Similarity=0.224  Sum_probs=102.0

Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701          70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA  149 (342)
Q Consensus        70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  149 (342)
                      +....++..+..+..|.-++..|++++|...|+-....+|.+++.|..||.++...++|++|+..|..+..++++++...
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            34566677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh
Q psy3701         150 LYVGLECGLTNNARLASKFFDLALSIAHEDP  180 (342)
Q Consensus       150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  180 (342)
                      +..|.++..+|+.+.|+..|..++. .|.+.
T Consensus       109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             chHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            9999999999999999999999998 45443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.32  E-value=1.6e-10  Score=84.25  Aligned_cols=115  Identities=15%  Similarity=0.010  Sum_probs=52.9

Q ss_pred             hCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---chHHHHHHHHHhhhCCHHH
Q psy3701          91 IGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HLPALYVGLECGLTNNARL  164 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~  164 (342)
                      .++...+...+++.+..+|+.   ..+.+.+|.++...|++++|...|++++...|+.   ..+.+.++.++...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            344444444444444444443   2233444444444444444444444444443322   1233344444555555555


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701         165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA  206 (342)
Q Consensus       165 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  206 (342)
                      |+..++. ....+..+.++..+|.++...|++++|+..|+++
T Consensus       104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            5554433 1222233444555566666666666666655554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.32  E-value=8.5e-09  Score=82.40  Aligned_cols=211  Identities=23%  Similarity=0.241  Sum_probs=185.7

Q ss_pred             HHhcCCC--cHHHHHHHHHHHHHhCChHHHHHHHHHHhh--cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC
Q psy3701          70 LVDLYPD--SAIAWYAVGCYYYLIGRSDPARRFLGKATS--LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC  145 (342)
Q Consensus        70 ~~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  145 (342)
                      .....+.  ........+..+...+++..+...+.....  ..+.....+...+......+++..++..+.+++...+..
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (291)
T COG0457          49 ALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP  128 (291)
T ss_pred             HHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc
Confidence            3455554  478888999999999999999999999997  788888999999999999999999999999999998887


Q ss_pred             chHHHHHHH-HHhhhCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh-cCcccccc
Q psy3701         146 HLPALYVGL-ECGLTNNARLASKFFDLALSIAH---EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ-LGGEIIAD  220 (342)
Q Consensus       146 ~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~  220 (342)
                      .......+. ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++...+. .       
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------  201 (291)
T COG0457         129 DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD-------  201 (291)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc-------
Confidence            666667777 89999999999999999988776   34556667777788899999999999999999887 4       


Q ss_pred             chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCCh
Q psy3701         221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL  300 (342)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  300 (342)
                                                   ...+..++..+...+++.+|...+.+++...|.....+..++..+...+.+
T Consensus       202 -----------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (291)
T COG0457         202 -----------------------------AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRY  252 (291)
T ss_pred             -----------------------------hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH
Confidence                                         478899999999999999999999999999998777788888888877889


Q ss_pred             HHHHHHHHHHHhcccC
Q psy3701         301 DSAVNYFHKTMALKRD  316 (342)
Q Consensus       301 ~~A~~~~~~al~~~p~  316 (342)
                      +++...+.+++...|.
T Consensus       253 ~~~~~~~~~~~~~~~~  268 (291)
T COG0457         253 EEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            9999999999999997

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.32  E-value=7.6e-11  Score=88.44  Aligned_cols=124  Identities=20%  Similarity=0.249  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHH
Q psy3701         162 ARLASKFFDLALSIAHED--PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ  239 (342)
Q Consensus       162 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (342)
                      +..+...+...++..+.+  ...++.+|.++...|++++|+..|++++.+.|+..                         
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-------------------------   69 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-------------------------   69 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------------------------
Confidence            444445554444444443  45667888888888888888888888887765431                         


Q ss_pred             hchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHH-------HhCChH-------HHHH
Q psy3701         240 LGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQA-------LTGDLD-------SAVN  305 (342)
Q Consensus       240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-------~~g~~~-------~A~~  305 (342)
                              ..+.++.++|.++...|++++|+..+++++.+.|.....+..+|.++.       ..|+++       +|..
T Consensus        70 --------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~  141 (168)
T CHL00033         70 --------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE  141 (168)
T ss_pred             --------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence                    113578888888888888888888888888888888877777777777       666665       5666


Q ss_pred             HHHHHHhcccCch
Q psy3701         306 YFHKTMALKRDDS  318 (342)
Q Consensus       306 ~~~~al~~~p~~~  318 (342)
                      +|++++..+|++.
T Consensus       142 ~~~~a~~~~p~~~  154 (168)
T CHL00033        142 YWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhCcccH
Confidence            6677778888654

>PRK15331 chaperone protein SicA; Provisional

Probab=99.32  E-value=1e-10  Score=83.64  Aligned_cols=121  Identities=15%  Similarity=0.040  Sum_probs=94.5

Q ss_pred             hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN  254 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (342)
                      +.++..+..+..|.-++..|++++|...|+-....+|.+                                    ...+.
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n------------------------------------~~Y~~   75 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN------------------------------------PDYTM   75 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc------------------------------------HHHHH
Confidence            344455667778888888888888888888888877777                                    47788


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      .||.++..+|+|++|+..|..+..++++++...+..|.|+..+|+.+.|+.+|+.++. .|.+......-...++.+.
T Consensus        76 GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331         76 GLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK  152 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888 5766665555444444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.31  E-value=5e-10  Score=91.20  Aligned_cols=224  Identities=12%  Similarity=0.042  Sum_probs=139.5

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      -...+..-|..|...+++++|.++|.++.     .++.+ ..........+...+.++... ++++|+.++++++.+   
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa-----~~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~---  103 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAA-----DCYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI---  103 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHH-----HHHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHH-----HHHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH---
Confidence            34455568899999999999999999973     22222 121222345566666666555 999999999988753   


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh-CCHHHHHHHHHHHHhhCCCC------hHHH
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT-NNARLASKFFDLALSIAHED------PFVI  183 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~  183 (342)
                                 |...|++..|-..+              ..+|.+|... |++++|+++|+++.......      ..++
T Consensus       104 -----------y~~~G~~~~aA~~~--------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~  158 (282)
T PF14938_consen  104 -----------YREAGRFSQAAKCL--------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL  158 (282)
T ss_dssp             -----------HHHCT-HHHHHHHH--------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             -----------HHhcCcHHHHHHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence                       44555555554432              2334455555 56666666666665543211      2456


Q ss_pred             HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh
Q psy3701         184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL  263 (342)
Q Consensus       184 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  263 (342)
                      ..+|.++...|+|++|+..|+++....-.++    .                         ........+...+.++...
T Consensus       159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~----l-------------------------~~~~~~~~~l~a~l~~L~~  209 (282)
T PF14938_consen  159 LKAADLYARLGRYEEAIEIYEEVAKKCLENN----L-------------------------LKYSAKEYFLKAILCHLAM  209 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC----T-------------------------TGHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhhccc----c-------------------------cchhHHHHHHHHHHHHHHc
Confidence            7889999999999999999999887644332    0                         0000124566788899999


Q ss_pred             hhHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHH--HhCChHHHHHHHHHHHhcccCch
Q psy3701         264 KKYEEALEFHKQALVVAPMKA-----STFCCIGYIQA--LTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       264 g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      |+...|...+++....+|...     .....+-.++.  ....+.+|+..|.+..+++|-..
T Consensus       210 ~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~  271 (282)
T PF14938_consen  210 GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT  271 (282)
T ss_dssp             T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence            999999999999999988553     23333444443  34567888888888777766433

>KOG4648|consensus

Probab=99.31  E-value=2e-12  Score=101.89  Aligned_cols=241  Identities=11%  Similarity=-0.000  Sum_probs=172.0

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHH
Q psy3701          36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAW  115 (342)
Q Consensus        36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  115 (342)
                      -..|+.|+.+|.|++|++||.++            +..+|.++..+.+.+.+|+++.++..|...+..++.++.....+|
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~------------ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAY  168 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTA------------IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAY  168 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhh------------hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence            35788888899999999999886            488888888888999999999999999999999998888888888


Q ss_pred             HHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH---------HHH
Q psy3701         116 LMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI---------HEM  186 (342)
Q Consensus       116 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~l  186 (342)
                      ...|.+-...|...+|.+.++.++++.|.+.+..-.++.+-    ...++.    -+.+..|....+.         -.-
T Consensus       169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~  240 (536)
T KOG4648|consen  169 SRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN----SLRERK----IATKSTPGFTPARQGMIQILPIKKP  240 (536)
T ss_pred             HHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhhh----HHhhcCCCCCccccchhhhccccCc
Confidence            88888888889999999999999998888655443333322    111111    0111122211111         122


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY  266 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (342)
                      |..+...|.++.++.++.+-+.....+.                                    .+-.+ +..+.+..++
T Consensus       241 G~~Fsk~~~~~~~i~~~~~~~A~~~~~~------------------------------------~L~~~-~~~~~KI~~~  283 (536)
T KOG4648|consen  241 GYKFSKKAMRSVPVVDVVSPRATIDDSN------------------------------------QLRIS-DEDIDKIFNS  283 (536)
T ss_pred             chhhhhhhccccceeEeeccccccCccc------------------------------------cCccc-HHHHHHHhhc
Confidence            4555666677777766665554443331                                    12222 5667777889


Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      ++++.-..+++..+|.........+.+-.-.|...++...++.++.+.|.+..+...+.+.-..+..
T Consensus       284 ~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~~ii~  350 (536)
T KOG4648|consen  284 NCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDTKIVP  350 (536)
T ss_pred             chhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhcccccc
Confidence            9999988888888877666666666666777888899999999999999998888777776655543

>KOG1070|consensus

Probab=99.31  E-value=1.4e-09  Score=100.10  Aligned_cols=216  Identities=14%  Similarity=0.153  Sum_probs=189.2

Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh-cCCCc----HHHHHHhhhHHHhhccHHHHHHHHHHH
Q psy3701          64 FKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS-LDKLF----LPAWLMYGHSFAVENEHDQAMAAYFNA  138 (342)
Q Consensus        64 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a  138 (342)
                      .+-+++++..+|+....|...-..+.+.++.++|++.+++|+. +++..    ...|..+-+....-|.-+.-.+.|++|
T Consensus      1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence            3455667888999999999999999999999999999999986 44443    346766666677778778888999999


Q ss_pred             hccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccc
Q psy3701         139 FNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII  218 (342)
Q Consensus       139 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  218 (342)
                      .+.... ...+..+..+|...+++++|.++++..++...+...+|..+|..++.+++-+.|...+.+|++.-|...    
T Consensus      1524 cqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e---- 1598 (1710)
T KOG1070|consen 1524 CQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE---- 1598 (1710)
T ss_pred             HHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh----
Confidence            887643 457778999999999999999999999999998999999999999999999999999999999998841    


Q ss_pred             ccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC
Q psy3701         219 ADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG  298 (342)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  298 (342)
                                                    ........+.+-++.|+.+.+...|+-.+..+|...+.|..+...-.+.|
T Consensus      1599 ------------------------------Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1599 ------------------------------HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred             ------------------------------hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence                                          14677778888999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcc
Q psy3701         299 DLDSAVNYFHKTMALK  314 (342)
Q Consensus       299 ~~~~A~~~~~~al~~~  314 (342)
                      +.+.++..|++++.+.
T Consensus      1649 ~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1649 DIKYVRDLFERVIELK 1664 (1710)
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999998864

>KOG2047|consensus

Probab=99.30  E-value=2.6e-08  Score=85.26  Aligned_cols=247  Identities=11%  Similarity=0.039  Sum_probs=128.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHH--------HHH-----------------------------------HHHH
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALL--------ADL-----------------------------------FKLA   67 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--------~~a-----------------------------------~~~~   67 (342)
                      -..+|..++..|.+.|.+++|.+.|++++.        ...                                   +..+
T Consensus       247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~  326 (835)
T KOG2047|consen  247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF  326 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence            455677799999999999999999999972        000                                   0011


Q ss_pred             H------------HHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh-cCCCc-----HHHHHHhhhHHHhhccHH
Q psy3701          68 H------------ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS-LDKLF-----LPAWLMYGHSFAVENEHD  129 (342)
Q Consensus        68 ~------------~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~-----~~~~~~la~~~~~~g~~~  129 (342)
                      +            -++..+|++...|.....  +..|+..+-+..|..|+. .+|..     ...|..+|..|...|+.+
T Consensus       327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence            1            112233444444433322  234455555555555543 34432     344666666666666666


Q ss_pred             HHHHHHHHHhccCCCC----chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC------------------ChHHHHHHH
Q psy3701         130 QAMAAYFNAFNLFKGC----HLPALYVGLECGLTNNARLASKFFDLALSIAHE------------------DPFVIHEMG  187 (342)
Q Consensus       130 ~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~l~  187 (342)
                      .|...|+++.+..=..    ..+|...|..-.+..+++.|.++.+++...-..                  +..+|..++
T Consensus       405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~  484 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA  484 (835)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence            6666666666543221    234444555555555666666666655432110                  123355555


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      ......|-++.....|++.+++.-..                                    +..-.+.|..+....-++
T Consensus       485 DleEs~gtfestk~vYdriidLriaT------------------------------------Pqii~NyAmfLEeh~yfe  528 (835)
T KOG2047|consen  485 DLEESLGTFESTKAVYDRIIDLRIAT------------------------------------PQIIINYAMFLEEHKYFE  528 (835)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhcCC------------------------------------HHHHHHHHHHHHhhHHHH
Confidence            55555565666666666665554333                                    344555555555555555


Q ss_pred             HHHHHHHHHHhhC--CCchHHHHHHHHHH---HHhCChHHHHHHHHHHHhccc
Q psy3701         268 EALEFHKQALVVA--PMKASTFCCIGYIQ---ALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       268 ~A~~~~~~al~~~--~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~al~~~p  315 (342)
                      ++.+.|++.+.+.  |.-.++|...-..+   ..--..+.|+..|+++++..|
T Consensus       529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            6666665555543  23333333222111   112244555566666655544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.30  E-value=1.9e-10  Score=83.81  Aligned_cols=129  Identities=22%  Similarity=0.057  Sum_probs=107.9

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHH
Q psy3701          44 ALENRALAADCYKGALLADLFKLAHELVDLYPDS---AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLM  117 (342)
Q Consensus        44 ~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~  117 (342)
                      ....|+.++..+.......+...++.++..+|+.   ..+.+.+|.+++..|++++|...|++++...|+.   +.+.+.
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            4445666666666666778888899999999988   5678889999999999999999999999987654   457888


Q ss_pred             hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701         118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL  173 (342)
Q Consensus       118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  173 (342)
                      ++.++...|++++|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999999763 3344456677789999999999999999999874

>PRK11906 transcriptional regulator; Provisional

Probab=99.30  E-value=2.3e-10  Score=95.16  Aligned_cols=146  Identities=8%  Similarity=-0.008  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHh---------CChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH
Q psy3701          61 ADLFKLAHELV---DLYPDSAIAWYAVGCYYYLI---------GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH  128 (342)
Q Consensus        61 ~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  128 (342)
                      ..|+.++.+++   ..+|+.+.++..++.|++..         .+..+|.+..+++++++|.++.++..+|.+....+++
T Consensus       275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~  354 (458)
T PRK11906        275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA  354 (458)
T ss_pred             HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence            44555566678   88999999999999999865         2356788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHhcChhHHHHHHHHH
Q psy3701         129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI-AYQNHNYTVAENCFMEA  206 (342)
Q Consensus       129 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a  206 (342)
                      +.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+-
T Consensus       355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999876554444444 44556788888888654

>KOG3081|consensus

Probab=99.29  E-value=4.6e-09  Score=80.33  Aligned_cols=262  Identities=15%  Similarity=0.077  Sum_probs=141.0

Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhh
Q psy3701          40 RVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG  119 (342)
Q Consensus        40 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  119 (342)
                      +-++-.|+|.+++..-.+.             ...+...+....+.+.|..+|++..-+.-....-   .....+...++
T Consensus        16 Rn~fY~Gnyq~~ine~~~~-------------~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a   79 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKF-------------SSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLA   79 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhh-------------ccccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHH
Confidence            4455678888888776663             3344677788888888888888754433322211   11122333344


Q ss_pred             hHHHhhccHHHHHHHHHHHhccC-CC-CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701         120 HSFAVENEHDQAMAAYFNAFNLF-KG-CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT  197 (342)
Q Consensus       120 ~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (342)
                      .....-++.++-+....+.+... .. +......-+.++...|++++|.+.....     .+.++...--.++.++.+.+
T Consensus        80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d  154 (299)
T KOG3081|consen   80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFD  154 (299)
T ss_pred             HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHH
Confidence            44433444433333333322221 11 1122233444555556666665555442     23333334445555555566


Q ss_pred             HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc-CCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701         198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII-ADKWEPLLNNLGHVNRKLKKYEEALEFHKQA  276 (342)
Q Consensus       198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (342)
                      -|.+.++++.+++.+..-.....+|......- ....++.-.+..... .+..+......+.+.+.+|++++|...++.+
T Consensus       155 ~A~~~lk~mq~ided~tLtQLA~awv~la~gg-ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea  233 (299)
T KOG3081|consen  155 LAEKELKKMQQIDEDATLTQLAQAWVKLATGG-EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA  233 (299)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHHHhccc-hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence            66666655555544431000111111111111 112222223332221 2333567788888888888888888888888


Q ss_pred             HhhCCCchHHHHHHHHHHHHhCChHHHH-HHHHHHHhcccCchhHHhH
Q psy3701         277 LVVAPMKASTFCCIGYIQALTGDLDSAV-NYFHKTMALKRDDSFATTM  323 (342)
Q Consensus       277 l~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~  323 (342)
                      +..++++++++.++..+-...|...++. +...+....+|+++.+...
T Consensus       234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~  281 (299)
T KOG3081|consen  234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHL  281 (299)
T ss_pred             HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHH
Confidence            8888888888888888888888775554 4556666777887765443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.29  E-value=1.2e-10  Score=87.42  Aligned_cols=102  Identities=18%  Similarity=0.157  Sum_probs=80.4

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG  153 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  153 (342)
                      ....++.+|.++...|++++|+..|++++.+.|+.   +.++..+|.++...|++++|+..+++++.+.|.....+..+|
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            36778999999999999999999999998886653   458899999999999999999999999999998888888888


Q ss_pred             HHHh-------hhCCHH-------HHHHHHHHHHhhCCC
Q psy3701         154 LECG-------LTNNAR-------LASKFFDLALSIAHE  178 (342)
Q Consensus       154 ~~~~-------~~~~~~-------~A~~~~~~~~~~~~~  178 (342)
                      .++.       ..|+++       +|+..+++++..+|.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            8887       555555       334444444444543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.28  E-value=2.6e-11  Score=79.42  Aligned_cols=84  Identities=21%  Similarity=0.253  Sum_probs=73.1

Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE  271 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (342)
                      .+|+|++|+..++++++..|.++                                  ....++.+|.++.+.|++++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~----------------------------------~~~~~~~la~~~~~~~~y~~A~~   46 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP----------------------------------NSAYLYNLAQCYFQQGKYEEAIE   46 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH----------------------------------HHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh----------------------------------hHHHHHHHHHHHHHCCCHHHHHH
Confidence            36899999999999999998530                                  04678889999999999999999


Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                      .+++ .+.+|.+...++.+|.++..+|++++|++.++++
T Consensus        47 ~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   47 LLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            9999 8888888899999999999999999999999875

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.27  E-value=2.8e-10  Score=99.38  Aligned_cols=142  Identities=15%  Similarity=0.121  Sum_probs=115.7

Q ss_pred             hhHHHHHHHHHHhHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--------ChH
Q psy3701          27 QSEMKSALLLLKGRVYEALEN---RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG--------RSD   95 (342)
Q Consensus        27 ~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------~~~   95 (342)
                      +.+..+.-++..|..+...++   +.+|+.+|+++            ++.+|+++.++..++.++....        +..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~A------------i~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~  401 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEI------------LKSEPDFTYAQAEKALADIVRHSQQPLDEKQLA  401 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------------HHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence            344456666777776665433   56677777775            7999999999999988886643        234


Q ss_pred             HHHHHHHHHhhc--CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701          96 PARRFLGKATSL--DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL  173 (342)
Q Consensus        96 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  173 (342)
                      .+.....+++.+  +|.++.++..+|......|++++|...+++++.++|+ ..++..+|.++...|++++|++.|++++
T Consensus       402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~  480 (517)
T PRK10153        402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAF  480 (517)
T ss_pred             HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            566666676664  7777889999999999999999999999999999994 7899999999999999999999999999


Q ss_pred             hhCCCChH
Q psy3701         174 SIAHEDPF  181 (342)
Q Consensus       174 ~~~~~~~~  181 (342)
                      .++|.++.
T Consensus       481 ~L~P~~pt  488 (517)
T PRK10153        481 NLRPGENT  488 (517)
T ss_pred             hcCCCCch
Confidence            99999885

>KOG0543|consensus

Probab=99.27  E-value=2.1e-10  Score=93.00  Aligned_cols=130  Identities=20%  Similarity=0.220  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      ....|..+++.|+|..|...|++++..-....+...            .....         .......++.|++.|+.+
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~------------ee~~~---------~~~~k~~~~lNlA~c~lK  269 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE------------EEQKK---------AEALKLACHLNLAACYLK  269 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH------------HHHHH---------HHHHHHHHhhHHHHHHHh
Confidence            456789999999999999999999876553310000            00000         000113689999999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      +++|.+|+..+.+++.++|++..+++..|.++..+|+++.|+..|++++++.|+|..+...|..+.++..+
T Consensus       270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888877765543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.23  E-value=3.6e-11  Score=74.51  Aligned_cols=63  Identities=25%  Similarity=0.259  Sum_probs=40.4

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC
Q psy3701          83 AVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC  145 (342)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  145 (342)
                      .+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            456666666666666666666666666666666666666666666666666666666666654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.23  E-value=7.6e-11  Score=77.17  Aligned_cols=81  Identities=21%  Similarity=0.228  Sum_probs=53.0

Q ss_pred             hCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701         159 TNNARLASKFFDLALSIAHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK  236 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                      .|+++.|+..++++++..|.  +...++.+|.+++..|+|++|+..+++ .+.++.+                       
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-----------------------   57 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-----------------------   57 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----------------------
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----------------------
Confidence            46677777777777777664  344566677777777777777777777 5555554                       


Q ss_pred             HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701         237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA  276 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (342)
                                   ....+.+|.++..+|++++|++.++++
T Consensus        58 -------------~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   58 -------------PDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             -------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence                         355566677777777777777777654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.22  E-value=1.7e-08  Score=96.45  Aligned_cols=210  Identities=13%  Similarity=0.038  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC---------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc--
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL---------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH--  146 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--  146 (342)
                      +......+.++...|++++|...+..+....+.         .......++.++...|++++|...+++++...+...  
T Consensus       409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (903)
T PRK04841        409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY  488 (903)
T ss_pred             cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence            445566788888899999999999887654221         123445577888899999999999999988655432  


Q ss_pred             ---hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc
Q psy3701         147 ---LPALYVGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI  217 (342)
Q Consensus       147 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  217 (342)
                         .+...+|.++...|++++|...+++++......      ..++..+|.++...|++++|...+++++........  
T Consensus       489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~--  566 (903)
T PRK04841        489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL--  566 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc--
Confidence               234557888888999999999999988754321      235567888999999999999999999887554310  


Q ss_pred             cccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-----chHHHHHHHH
Q psy3701         218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-----KASTFCCIGY  292 (342)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~  292 (342)
                                                ...+.....+..+|.++...|++++|...+++++.....     ....+..++.
T Consensus       567 --------------------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        567 --------------------------EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             --------------------------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence                                      000111234567889999999999999999999876332     2455667899


Q ss_pred             HHHHhCChHHHHHHHHHHHhccc
Q psy3701         293 IQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       293 ~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                      ++...|++++|...+.++..+.+
T Consensus       621 ~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        621 ISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999977643

>KOG1941|consensus

Probab=99.22  E-value=4.7e-09  Score=83.76  Aligned_cols=240  Identities=19%  Similarity=0.171  Sum_probs=178.3

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhCChHHHHHHHHHHhhc----CC
Q psy3701          37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD---SAIAWYAVGCYYYLIGRSDPARRFLGKATSL----DK  109 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~  109 (342)
                      ..|.-++...++++|+..+.+.+            ..-.+   ....+-.+..+....|.+++++.+--.-+..    ..
T Consensus        11 ~~g~~Ly~s~~~~~al~~w~~~L------------~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d   78 (518)
T KOG1941|consen   11 EKGLQLYQSNQTEKALQVWTKVL------------EKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED   78 (518)
T ss_pred             HHHHhHhcCchHHHHHHHHHHHH------------HHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666667778888887777753            22221   2234445567778888888877665444332    21


Q ss_pred             C--cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh--
Q psy3701         110 L--FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-----LPALYVGLECGLTNNARLASKFFDLALSIAHEDP--  180 (342)
Q Consensus       110 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--  180 (342)
                      .  ..+++.++++.+....++.+++.+-...+.+....+     .+...++..+..++.++++++.|+++++....+.  
T Consensus        79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~  158 (518)
T KOG1941|consen   79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA  158 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence            1  246788999999999999999998888877643332     4566689999999999999999999998754432  


Q ss_pred             ----HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHH
Q psy3701         181 ----FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNL  256 (342)
Q Consensus       181 ----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (342)
                          .++..+|.++....++++|.-+..++.++.....    ...|..-+                      ...+++.+
T Consensus       159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~----l~d~~~ky----------------------r~~~lyhm  212 (518)
T KOG1941|consen  159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG----LKDWSLKY----------------------RAMSLYHM  212 (518)
T ss_pred             eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC----cCchhHHH----------------------HHHHHHHH
Confidence                4678999999999999999999999998876553    11111111                      13577889


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhC------CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         257 GHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      +..+..+|+.-.|.++++++.++.      +-.......+|.+|...|+.+.|..-|+++....
T Consensus       213 aValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  213 AVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            999999999999999999998763      2234567789999999999999999999998653

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.21  E-value=5.8e-08  Score=77.49  Aligned_cols=202  Identities=24%  Similarity=0.229  Sum_probs=170.7

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVD--LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ......+..+...+++..+...+...            ..  ..+.....+...+......+++..++..+.+++...+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKA------------LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD  127 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHH------------HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC
Confidence            34445666777777777777777775            33  67888899999999999999999999999999998888


Q ss_pred             cHHHHHHhhh-HHHhhccHHHHHHHHHHHhccCC---CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC-ChHHHHH
Q psy3701         111 FLPAWLMYGH-SFAVENEHDQAMAAYFNAFNLFK---GCHLPALYVGLECGLTNNARLASKFFDLALSIAHE-DPFVIHE  185 (342)
Q Consensus       111 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  185 (342)
                      ........+. ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++...+. ....+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  207 (291)
T COG0457         128 PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN  207 (291)
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHH
Confidence            7666666666 89999999999999999988776   23445555666678889999999999999999999 6899999


Q ss_pred             HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701         186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      ++..+...+++++|+..+.+++...|..                                    ...+..++..+...+.
T Consensus       208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~  251 (291)
T COG0457         208 LGLLYLKLGKYEEALEYYEKALELDPDN------------------------------------AEALYNLALLLLELGR  251 (291)
T ss_pred             hhHHHHHcccHHHHHHHHHHHHhhCccc------------------------------------HHHHhhHHHHHHHcCC
Confidence            9999999999999999999999998874                                    3567777777777778


Q ss_pred             HHHHHHHHHHHHhhCCC
Q psy3701         266 YEEALEFHKQALVVAPM  282 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~  282 (342)
                      ++++...+.+++...|.
T Consensus       252 ~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         252 YEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            99999999999999987

>KOG1941|consensus

Probab=99.21  E-value=3.8e-09  Score=84.31  Aligned_cols=241  Identities=16%  Similarity=0.085  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcC---C--CcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY---P--DSAIAWYAVGCYYYLIGRSDPARRFLGK  103 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~---p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~  103 (342)
                      .+.-..+..+++.+....++.+++.+-+..            +...   |  .-..+...+|..+..++.++++++.|++
T Consensus        80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~------------l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~  147 (518)
T KOG1941|consen   80 DFLLEAYLNLARSNEKLCEFHKTISYCKTC------------LGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEK  147 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHH
Confidence            344455666777777777777777665553            2222   2  1235677799999999999999999999


Q ss_pred             HhhcCCCcH------HHHHHhhhHHHhhccHHHHHHHHHHHhccCCC----------CchHHHHHHHHHhhhCCHHHHHH
Q psy3701         104 ATSLDKLFL------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG----------CHLPALYVGLECGLTNNARLASK  167 (342)
Q Consensus       104 a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~  167 (342)
                      |+....++.      .++..+|..+....++++|..+..++.++-..          ...+.+.++..+..+|+..+|.+
T Consensus       148 A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e  227 (518)
T KOG1941|consen  148 ALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAME  227 (518)
T ss_pred             HHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence            998754432      46889999999999999999999999887433          12456678899999999999999


Q ss_pred             HHHHHHhhC------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhc
Q psy3701         168 FFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG  241 (342)
Q Consensus       168 ~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (342)
                      +++++.++.      +........+|.+|...|+.+.|..-|+.++..-..-+            ..+            
T Consensus       228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g------------drm------------  283 (518)
T KOG1941|consen  228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG------------DRM------------  283 (518)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh------------hhH------------
Confidence            999998764      22345677899999999999999999999987654432            011            


Q ss_pred             hhccCCCChHHHHHHHHHHHHhhhHHH-----HHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         242 GEIIADKWEPLLNNLGHVNRKLKKYEE-----ALEFHKQALVVAPMK------ASTFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-----A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                            ....++...+.++....-..+     |+++-++++++...-      ...+..++.+|..+|.-++=...+.++
T Consensus       284 ------gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra  357 (518)
T KOG1941|consen  284 ------GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRA  357 (518)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence                  113455556666554444444     888888877765322      256788899998888777766666554


Q ss_pred             H
Q psy3701         311 M  311 (342)
Q Consensus       311 l  311 (342)
                      -
T Consensus       358 ~  358 (518)
T KOG1941|consen  358 H  358 (518)
T ss_pred             H
Confidence            3

>KOG0543|consensus

Probab=99.20  E-value=8.1e-10  Score=89.72  Aligned_cols=135  Identities=14%  Similarity=0.085  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC----c-----------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCC
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKL----F-----------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK  143 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  143 (342)
                      ......|..+++.|+|..|...|++++..-+.    +           ..++.+++.++..++++..|+....++|.++|
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~  288 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP  288 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            34556789999999999999999998875321    1           23588999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHH-HHHHHHHHHhhhhc
Q psy3701         144 GCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVA-ENCFMEALSKVKQL  213 (342)
Q Consensus       144 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~al~~~~~~  213 (342)
                      ++..+++..|.++...|+++.|+..|++++++.|+|..+...+..+-.+..++.+. .+.|.+++...+..
T Consensus       289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~  359 (397)
T KOG0543|consen  289 NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEE  359 (397)
T ss_pred             CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999988887776654 78888888766544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.19  E-value=1.2e-09  Score=86.78  Aligned_cols=111  Identities=14%  Similarity=0.068  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHH-HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701         180 PFVIHEMGVIA-YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH  258 (342)
Q Consensus       180 ~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  258 (342)
                      ...++..+..+ ...|+|++|+..|++.++..|++.                                 ..+.+++.+|.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---------------------------------~a~~A~y~LG~  188 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---------------------------------YQPNANYWLGQ  188 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---------------------------------chHHHHHHHHH
Confidence            34555566554 456778888888888887777762                                 11357777888


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhH
Q psy3701         259 VNRKLKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM  323 (342)
Q Consensus       259 ~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  323 (342)
                      +|...|++++|+..|+++++..|++   +++++.+|.++..+|++++|...|+++++..|+...+...
T Consensus       189 ~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A  256 (263)
T PRK10803        189 LNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA  256 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            8888888888888888888776654   5677777888888888888888888888888877755443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.17  E-value=1.8e-09  Score=85.89  Aligned_cols=108  Identities=11%  Similarity=0.037  Sum_probs=87.7

Q ss_pred             chHHHHHHHHH-hhhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701         146 HLPALYVGLEC-GLTNNARLASKFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK  221 (342)
Q Consensus       146 ~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  221 (342)
                      ....+..+..+ ...|++++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|+++++..|+++       
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~-------  214 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP-------  214 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-------
Confidence            34555666654 45688889988899888888887   46888999999999999999999999998888763       


Q ss_pred             hhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH
Q psy3701         222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST  286 (342)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  286 (342)
                                                ...++++.+|.++...|++++|...|+++++..|+...+
T Consensus       215 --------------------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        215 --------------------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             --------------------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence                                      235788888999989999999999999999988887644

>KOG2053|consensus

Probab=99.17  E-value=1.6e-07  Score=83.43  Aligned_cols=229  Identities=12%  Similarity=0.013  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHH
Q psy3701          54 CYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMA  133 (342)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  133 (342)
                      ......+.+|+....++++..|+...+....|..+++.|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            33444455555666667899999999999999999999999999988888777888888889999999999999999999


Q ss_pred             HHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHH-HHHHHHHHHHhcChhHHH---------HHH
Q psy3701         134 AYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV-IHEMGVIAYQNHNYTVAE---------NCF  203 (342)
Q Consensus       134 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~---------~~~  203 (342)
                      +|+++...+|+ ......+-.+|.+-+.|.+-.+.--+..+..|.++.. |..+..++......+...         ...
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            99999999999 7788888889999999988888777778888988765 444444444443333332         233


Q ss_pred             HHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhC-C
Q psy3701         204 MEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL-VVA-P  281 (342)
Q Consensus       204 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-~  281 (342)
                      ++.++... .                                -...+++. ..-.++..+|++++|.+.+..-+ +.. +
T Consensus       178 ~~~l~~~g-k--------------------------------~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~  223 (932)
T KOG2053|consen  178 QKLLEKKG-K--------------------------------IESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTS  223 (932)
T ss_pred             HHHhccCC-c--------------------------------cchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence            33333220 0                                00001111 22345667889999999984433 333 3


Q ss_pred             CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701         282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       282 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  317 (342)
                      .+...-......+...++|.+-.+...+.+...+|+
T Consensus       224 ~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  224 ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            344444456677788899999999999999988887

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.16  E-value=2.3e-10  Score=71.66  Aligned_cols=68  Identities=19%  Similarity=0.239  Sum_probs=62.5

Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      +...|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999999999999999999999998888777653

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.16  E-value=9.7e-10  Score=75.84  Aligned_cols=96  Identities=17%  Similarity=0.111  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC---CchHHHHH
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG---CHLPALYV  152 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l  152 (342)
                      .+++.+|.++-..|+.++|+.+|++++......   ..+++.+|.++...|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            568899999999999999999999999875443   568889999999999999999999999998888   66777788


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHh
Q psy3701         153 GLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      +.++...|+.++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8999999999999998887764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.12  E-value=3e-09  Score=89.00  Aligned_cols=123  Identities=23%  Similarity=0.148  Sum_probs=90.7

Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH  231 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  231 (342)
                      +-..+...++++.|++.+++..+.+|+   +...++.++...++..+|+..+.++++..|.+                  
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------------------  233 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------------------  233 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------------------
Confidence            334455567788888888877766653   45567777777777778888888888777766                  


Q ss_pred             hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701         232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM  311 (342)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  311 (342)
                                        ...+...+..+...++++.|+...+++++..|++...|+.|+.+|...|++++|+..+..+-
T Consensus       234 ------------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  234 ------------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             ------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence                              46777777778888888888888888888888888888888888888888888876666443


Q ss_pred             hc
Q psy3701         312 AL  313 (342)
Q Consensus       312 ~~  313 (342)
                      -.
T Consensus       296 m~  297 (395)
T PF09295_consen  296 ML  297 (395)
T ss_pred             CC
Confidence            33

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4234|consensus

Probab=99.11  E-value=1.2e-09  Score=79.83  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      +-.-|.-++..|+|++|..-|..++...|..+                               ......+|.+.|.++++
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-------------------------------~e~rsIly~Nraaa~iK  146 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTS-------------------------------TEERSILYSNRAAALIK  146 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-------------------------------HHHHHHHHhhhHHHHHH
Confidence            44568888999999999999999999999874                               11124588899999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      ++.++.|+..+.++++++|.+..++...+.+|.++..+++|++.|+++++.+|....+.....++
T Consensus       147 l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  147 LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999988877666544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.10  E-value=4e-09  Score=88.25  Aligned_cols=121  Identities=14%  Similarity=0.059  Sum_probs=104.8

Q ss_pred             HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701         117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY  196 (342)
Q Consensus       117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (342)
                      .+-..+...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.+++...|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3445566678899999999998888875   6667888888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701         197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA  276 (342)
Q Consensus       197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (342)
                      +.|+...++++...|..                                    ...|..|+.+|...|++++|+..++.+
T Consensus       251 ~lAL~iAk~av~lsP~~------------------------------------f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSE------------------------------------FETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHhCchh------------------------------------HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999999999988                                    589999999999999999998777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3081|consensus

Probab=99.10  E-value=1.2e-07  Score=72.83  Aligned_cols=164  Identities=19%  Similarity=0.066  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      .....-|.++...|++++|.+...+.     .+.++...--.++.++.+.+-|....+++.+++.+.  .+..+|..+..
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~  181 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVK  181 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHH
Confidence            34455578889999999999988773     345566666778899999999999999999988763  34445555443


Q ss_pred             h----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         159 T----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       159 ~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      .    +.+.+|.-+|++.-+..|..+.....++.+++.+|+|++|...++.++..++.+                     
T Consensus       182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d---------------------  240 (299)
T KOG3081|consen  182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD---------------------  240 (299)
T ss_pred             HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC---------------------
Confidence            3    579999999999999888899999999999999999999999999999999988                     


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhCCCchH
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE-FHKQALVVAPMKAS  285 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~  285 (342)
                                     ++.+.++..+-...|...++.+ .+.+....+|.++.
T Consensus       241 ---------------petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  241 ---------------PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             ---------------HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence                           5899999999888998877654 44455556677664

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.07  E-value=8.9e-07  Score=71.82  Aligned_cols=266  Identities=12%  Similarity=0.032  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA-IAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      +...-+..+-++.-+..|+++.|.+-|+..             -.+|+.- -.+..+-.-....|+.+.|+.+-+++-..
T Consensus       117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAM-------------l~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~  183 (531)
T COG3898         117 DQEPLIHLLEAQAALLEGDYEDARKKFEAM-------------LDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK  183 (531)
T ss_pred             cchHHHHHHHHHHHHhcCchHHHHHHHHHH-------------hcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence            344567777888999999999999999985             3455432 22233333345789999999999999999


Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC---CCC---chHHHHHHHHHh-hhCCHHHHHHHHHHHHhhCCCCh
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF---KGC---HLPALYVGLECG-LTNNARLASKFFDLALSIAHEDP  180 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~---~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~  180 (342)
                      .|.-+.++...-...+..|+++.|+++.+......   ++.   ..+...-+.... ..-+...|...-.++.++.|+-.
T Consensus       184 Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlv  263 (531)
T COG3898         184 APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLV  263 (531)
T ss_pred             ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccc
Confidence            99999999988888999999999999988665432   221   111122222211 22468889999999999999998


Q ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHH
Q psy3701         181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHV  259 (342)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~  259 (342)
                      ..-..-+..+++.|+..++-.+++.+.+..|...     .........-|+...+.++.... ....++..+.....+..
T Consensus       264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~a  338 (531)
T COG3898         264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEA  338 (531)
T ss_pred             hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            8888999999999999999999999999998772     22223333444555555555555 44667778888999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH-hCChHHHHHHHHHHHhc
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL-TGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~  313 (342)
                      -...|++..|..--+.+....|.. .++..++.+-.. +|+-.++..++.+++.-
T Consensus       339 Alda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         339 ALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            999999999999999998888854 456667777765 49999999999999874

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.07  E-value=9.5e-10  Score=69.91  Aligned_cols=71  Identities=23%  Similarity=0.294  Sum_probs=65.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      |..+|...+++++|++.+++++..+|+++..+..+|.++..+|++.+|+..++++++..|+++.+......
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            35678999999999999999999999999999999999999999999999999999999999887765543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.06  E-value=5.3e-09  Score=72.20  Aligned_cols=99  Identities=19%  Similarity=0.144  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701         181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN  260 (342)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  260 (342)
                      .+++.+|.++-..|+.++|+..|++++.......                                 ....++..+|.++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---------------------------------~~~~a~i~lastl   48 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---------------------------------DRRRALIQLASTL   48 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---------------------------------HHHHHHHHHHHHH
Confidence            4567778888888888888888888877543331                                 1135777788888


Q ss_pred             HHhhhHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         261 RKLKKYEEALEFHKQALVVAPM---KASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       261 ~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      ..+|++++|+..+++++...|+   +......++.++...|++++|+..+-.++.
T Consensus        49 r~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   49 RNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888888877777   566677778888888888888888777664

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.06  E-value=5.1e-07  Score=69.58  Aligned_cols=192  Identities=15%  Similarity=0.042  Sum_probs=127.9

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG  153 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  153 (342)
                      .+..|+.-|...++.|++++|++.|+......|..   ..+...++.++...+++++|+...++.+.+.|+++.+-    
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d----  108 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD----  108 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh----
Confidence            46677777888888888888888888877776654   35667777777777777777777777777777755331    


Q ss_pred             HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH--------hcChhHHHHHHHHHHHhhhhcCccccccchhhH
Q psy3701         154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ--------NHNYTVAENCFMEALSKVKQLGGEIIADKWEPL  225 (342)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  225 (342)
                                                 .+++..|.+++.        +.-..+|+..|+..++..|++.-.      ..+
T Consensus       109 ---------------------------Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya------~dA  155 (254)
T COG4105         109 ---------------------------YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA------PDA  155 (254)
T ss_pred             ---------------------------HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch------hhH
Confidence                                       122222322221        122356778888888888887400      000


Q ss_pred             HHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCChHH
Q psy3701         226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGDLDS  302 (342)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~  302 (342)
                      ...+....             ...+.--..+|..|.+.|.+..|+.-++.+++..|+..   +++..+..+|..+|-.++
T Consensus       156 ~~~i~~~~-------------d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~  222 (254)
T COG4105         156 KARIVKLN-------------DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE  222 (254)
T ss_pred             HHHHHHHH-------------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHH
Confidence            00000000             00123445688999999999999999999999877654   678889999999999999


Q ss_pred             HHHHHHHHHhcccCch
Q psy3701         303 AVNYFHKTMALKRDDS  318 (342)
Q Consensus       303 A~~~~~~al~~~p~~~  318 (342)
                      |...-.-.-.-.|+++
T Consensus       223 a~~~~~vl~~N~p~s~  238 (254)
T COG4105         223 AKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHHHHHHhcCCCCc
Confidence            9887655444556665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=99.00  E-value=1.7e-07  Score=68.06  Aligned_cols=63  Identities=11%  Similarity=0.122  Sum_probs=31.2

Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701         150 LYVGLECGLTNNARLASKFFDLALS-IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ  212 (342)
Q Consensus       150 ~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  212 (342)
                      +.++......|++.+|...|++++. +..+++..+..++...+..+++..|...+++..+.+|.
T Consensus        93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            3444444555555555555544443 33444555555555555555555555555555554443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.98  E-value=2.3e-07  Score=67.31  Aligned_cols=153  Identities=12%  Similarity=-0.019  Sum_probs=110.4

Q ss_pred             HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhhhCCHHHH
Q psy3701          87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN-LFKGCHLPALYVGLECGLTNNARLA  165 (342)
Q Consensus        87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~l~~~~~~~~~~~~A  165 (342)
                      ...+.=|.+....-..+.+...|.. .-.+.+|......|++.+|...|++++. +..+++..+..++......+++..|
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a  143 (251)
T COG4700          65 ALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA  143 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence            3334445555555556666666653 3466778888888888888888888775 3445566677778888888888888


Q ss_pred             HHHHHHHHhhCCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchh
Q psy3701         166 SKFFDLALSIAHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE  243 (342)
Q Consensus       166 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
                      ...+++..+.+|.  .++....+|.++...|++.+|...|+.++...|..                              
T Consensus       144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~------------------------------  193 (251)
T COG4700         144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP------------------------------  193 (251)
T ss_pred             HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH------------------------------
Confidence            8888888887764  46677788888888888888888888888887776                              


Q ss_pred             ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701         244 IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL  277 (342)
Q Consensus       244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  277 (342)
                             ......+..+.++|+.++|...+....
T Consensus       194 -------~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         194 -------QARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             -------HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence                   466667777888887777766555544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.97  E-value=1.9e-09  Score=67.48  Aligned_cols=62  Identities=11%  Similarity=0.046  Sum_probs=28.7

Q ss_pred             hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       125 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      .|++++|+..|++++..+|++..+++.++.++...|++++|...+++++..+|+++.++..+
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444444333

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.97  E-value=2e-08  Score=77.90  Aligned_cols=108  Identities=16%  Similarity=0.150  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      .+..|.-++..|+|..|...|...++..|++.                                 ..+.+++.||.+++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---------------------------------~~~nA~yWLGe~~y~  190 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---------------------------------YTPNAYYWLGESLYA  190 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---------------------------------ccchhHHHHHHHHHh
Confidence            67888889999999999999999999999874                                 335799999999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhH
Q psy3701         263 LKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM  323 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  323 (342)
                      +|++++|...|..+++..|++   +++++.+|.+..++|+.++|...|+++++..|+.+.+...
T Consensus       191 qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         191 QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            999999999999999988765   5889999999999999999999999999999998866543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.96  E-value=4.8e-08  Score=68.57  Aligned_cols=70  Identities=16%  Similarity=0.172  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCC---------------hHHHHHHHHHHHhc
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGD---------------LDSAVNYFHKTMAL  313 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~---------------~~~A~~~~~~al~~  313 (342)
                      +...+|.+|.+.|++++|+..+++-++++|.++   .+++..|.++..+..               ..+|...|++.++.
T Consensus        49 AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   49 AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444433   234444444444433               56888899999999


Q ss_pred             ccCchhHH
Q psy3701         314 KRDDSFAT  321 (342)
Q Consensus       314 ~p~~~~~~  321 (342)
                      .|++..+.
T Consensus       129 yP~S~ya~  136 (142)
T PF13512_consen  129 YPNSEYAA  136 (142)
T ss_pred             CcCChhHH
Confidence            99887554

>KOG2047|consensus

Probab=98.96  E-value=5.4e-07  Score=77.52  Aligned_cols=161  Identities=14%  Similarity=0.101  Sum_probs=130.9

Q ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc----H
Q psy3701          42 YEALENRALAADCYKGALLADLFKLAHELVDLYPDS-----AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF----L  112 (342)
Q Consensus        42 ~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~  112 (342)
                      -...|+..+-+..|..+           +...+|..     ...|...|..|...|+.+.|...|+++....-..    .
T Consensus       357 ~l~e~~~~~~i~tyteA-----------v~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa  425 (835)
T KOG2047|consen  357 KLYEGNAAEQINTYTEA-----------VKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA  425 (835)
T ss_pred             hhhcCChHHHHHHHHHH-----------HHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence            34456666667777776           35567753     4689999999999999999999999999875432    5


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------------------CchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------------------CHLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      .+|...|..-....+++.|+++.+++...-..                  +...|..++......|-++.....|++++.
T Consensus       426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid  505 (835)
T KOG2047|consen  426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID  505 (835)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            68899999999999999999999998865321                  223455567777778899999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      +.--.|.+-.+.|..+....-++++.+.|++.+.+.+-.
T Consensus       506 LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p  544 (835)
T KOG2047|consen  506 LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP  544 (835)
T ss_pred             HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence            988889999999999999999999999999999987654

>KOG3617|consensus

Probab=98.94  E-value=1.7e-06  Score=76.71  Aligned_cols=259  Identities=16%  Similarity=0.106  Sum_probs=153.9

Q ss_pred             HhHHHHhhccHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701          38 KGRVYEALENRALAADCYKGAL--------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK  103 (342)
Q Consensus        38 ~g~~~~~~~~~~~A~~~~~~~~--------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  103 (342)
                      .+.....+|..++|..+|++..              +++|+++++.-  ..-.--..+++.+..+...++.+.|+++|++
T Consensus       806 vAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~--DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK  883 (1416)
T KOG3617|consen  806 VAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETK--DRIHLRNTYYNYAKYLEARRDIEAALEYYEK  883 (1416)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhc--cceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence            3455667788888888888764              34555544421  1112345788999999999999999999998


Q ss_pred             Hh----------hcCCC----------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccC---------------------
Q psy3701         104 AT----------SLDKL----------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF---------------------  142 (342)
Q Consensus       104 a~----------~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------  142 (342)
                      +-          .-+|.          ++..|...|......|+.+.|+.+|..+-...                     
T Consensus       884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e  963 (1416)
T KOG3617|consen  884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE  963 (1416)
T ss_pred             cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence            62          22332          34567778888899999999999998876442                     


Q ss_pred             CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh------CCCCh---HH-----------HHHHHHHHHHhc-ChhHHHH
Q psy3701         143 KGCHLPALYVGLECGLTNNARLASKFFDLALSI------AHEDP---FV-----------IHEMGVIAYQNH-NYTVAEN  201 (342)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~---~~-----------~~~l~~~~~~~~-~~~~A~~  201 (342)
                      ..+..+.+.+|+.|...|+..+|+..|.++-..      ...+.   ..           ....+..|...| ..+.|+.
T Consensus       964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen  964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred             cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence            224455666666777777777776666654321      11110   00           111222333333 4444444


Q ss_pred             HHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHH------
Q psy3701         202 CFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ------  275 (342)
Q Consensus       202 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------  275 (342)
                      +|.++=-+...-          ...+  ....-.++....+.......+.++..-+..+....+|++|...+-.      
T Consensus      1044 LYHkAGm~~kAL----------elAF--~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1044 LYHKAGMIGKAL----------ELAF--RTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred             HHHhhcchHHHH----------HHHH--hhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            444431111100          0000  0000012222222234445577888888888889999998876544      


Q ss_pred             HHhhC----------------CC---------chHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         276 ALVVA----------------PM---------KASTFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       276 al~~~----------------~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                      ++++.                |.         ...++..+|.++.++|.|..|-+-|.++
T Consensus      1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            33321                11         1356788999999999999998888775

>KOG4648|consensus

Probab=98.93  E-value=7e-09  Score=82.29  Aligned_cols=109  Identities=17%  Similarity=0.154  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      .-..|.-|+++|+|++|+.+|.+++..+|.++                                    ..+.+.+.+|.+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------------------------------------V~~~NRA~AYlk  143 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------------------------------------VYHINRALAYLK  143 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCc------------------------------------cchhhHHHHHHH
Confidence            45679999999999999999999999999884                                    789999999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      ++++..|..-++.++.++.....+|...+.+-..+|+..+|.+.++.++++.|++.+....++.+
T Consensus       144 ~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  144 QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999988766655544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.93  E-value=8.7e-09  Score=65.44  Aligned_cols=62  Identities=18%  Similarity=0.098  Sum_probs=30.9

Q ss_pred             HHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch
Q psy3701          86 CYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL  147 (342)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  147 (342)
                      .+|+..+++++|+.++++++.++|+++..|..+|.++...|++++|+..++++++..|+++.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            34444555555555555555555555555555555555555555555555555555444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.93  E-value=6.8e-08  Score=75.05  Aligned_cols=107  Identities=17%  Similarity=0.108  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhH
Q psy3701         149 ALYVGLECGLTNNARLASKFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPL  225 (342)
Q Consensus       149 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  225 (342)
                      .+..+.-++..|+|.+|...|..-++..|++   +.+++.||.+++.+|++++|...|..+.+-.|+++           
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-----------  212 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-----------  212 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-----------
Confidence            4556666777777777777777777777664   46677788888888888888888888887777663           


Q ss_pred             HHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHH
Q psy3701         226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC  288 (342)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  288 (342)
                                            ..++.++.+|.+..++|+.++|...|+++++..|+...+..
T Consensus       213 ----------------------KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         213 ----------------------KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             ----------------------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence                                  33577888888888888888888888888888887765543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.92  E-value=8e-08  Score=67.45  Aligned_cols=104  Identities=17%  Similarity=0.078  Sum_probs=80.6

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc---hHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH---LPAL  150 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~  150 (342)
                      .+..++.-|...+..|+|++|++.|+......|..   ..+.+.++.+|...+++++|+..+++.++++|.++   .+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            46778888999999999999999999988887754   56788899999999999999999999999988865   4566


Q ss_pred             HHHHHHhhhCC---------------HHHHHHHHHHHHhhCCCCh
Q psy3701         151 YVGLECGLTNN---------------ARLASKFFDLALSIAHEDP  180 (342)
Q Consensus       151 ~l~~~~~~~~~---------------~~~A~~~~~~~~~~~~~~~  180 (342)
                      ..|.++..+..               ...|...|++.+...|++.
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            67777766654               5556666666666666554

>KOG1070|consensus

Probab=98.88  E-value=5e-07  Score=84.05  Aligned_cols=196  Identities=13%  Similarity=0.005  Sum_probs=165.3

Q ss_pred             ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CCCc----hHHHHHHHHHhhhCCHHHHHH
Q psy3701          93 RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KGCH----LPALYVGLECGLTNNARLASK  167 (342)
Q Consensus        93 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~  167 (342)
                      +-.+..+.|++.+.-+|+..-.|+.+..-+...++.++|.+..++++..- +...    ..|..+-+....-|.-+.-.+
T Consensus      1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred             cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence            34456778899999999999999999999999999999999999999753 3322    233333333444466777888


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCC
Q psy3701         168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD  247 (342)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (342)
                      .|+++.+.. +...++..|..+|...+++++|.++++..++...+.                                  
T Consensus      1519 VFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------------------------------- 1563 (1710)
T KOG1070|consen 1519 VFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------------------------------- 1563 (1710)
T ss_pred             HHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------------------------------
Confidence            899988765 345678899999999999999999999999998855                                  


Q ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         248 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM--KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                        ...|..+|..++++.+-+.|...+.+|++.-|.  +.......+.+.++.|+.+.++..|+..+.-+|.-.+.|..+.
T Consensus      1564 --~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1564 --RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             --hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence              589999999999999999999999999999997  7788888999999999999999999999999999988887654

>KOG2471|consensus

Probab=98.87  E-value=5.4e-07  Score=75.10  Aligned_cols=117  Identities=19%  Similarity=0.136  Sum_probs=96.2

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD--------SAIAWYAVGCYYYLIGRSDPARRFLG  102 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~  102 (342)
                      .+..++++.+.++..|++.+|.+.+....           +...|.        ....|.++|.++++.|.|.-+..+|.
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-----------i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~  307 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSN-----------IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFL  307 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcc-----------cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHH
Confidence            34566788999999999999999988763           333443        34567899999999999999999999


Q ss_pred             HHhh-c--------CC---------CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701         103 KATS-L--------DK---------LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus       103 ~a~~-~--------~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      +|++ .        .|         ...+..++.|..+...|++-.|.++|.++......+|..|..++.++..
T Consensus       308 kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  308 KALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            9995 1        11         2356789999999999999999999999999999999999999887653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.87  E-value=6.5e-07  Score=69.03  Aligned_cols=194  Identities=17%  Similarity=0.083  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS---AIAWYAVGCYYYLIGRSDPARRFLGKAT  105 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~  105 (342)
                      ......++..|......|++++|++.|+..            ...+|..   ..+...++.++++.+++++|+...++-+
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l------------~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi   98 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEAL------------DSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI   98 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            345678889999999999999999999995            4666654   6788999999999999999999999999


Q ss_pred             hcCCCcHH---HHHHhhhHHHh--------hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701         106 SLDKLFLP---AWLMYGHSFAV--------ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       106 ~~~~~~~~---~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      .+.|.+++   +++..|.++..        ..-..+|+..++..+...|++..+--....+           ..++..  
T Consensus        99 ~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~--  165 (254)
T COG4105          99 RLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDA--  165 (254)
T ss_pred             HhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHH--
Confidence            99998754   46666666443        2234567777777777777754332111111           011111  


Q ss_pred             hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN  254 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (342)
                          -..--..+|..|.+.|.+-.|+..++.+++..|+.+                                 ...+++.
T Consensus       166 ----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~---------------------------------~~~eaL~  208 (254)
T COG4105         166 ----LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS---------------------------------AVREALA  208 (254)
T ss_pred             ----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc---------------------------------chHHHHH
Confidence                111234678889999999999999999998866652                                 2246788


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCch
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQALVVAPMKA  284 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  284 (342)
                      .+..+|..+|-.++|...-.-.-...|++.
T Consensus       209 ~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         209 RLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            888999999999988776544333345443

>KOG4234|consensus

Probab=98.87  E-value=8.5e-08  Score=70.36  Aligned_cols=112  Identities=9%  Similarity=-0.082  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH-----HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL-----PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      +..+..-|.-++..|+|++|..-|..|+.+.|..+     ..+.+.|.+++.++.++.|+..+.++++++|.+..++...
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            34456668889999999999999999999988753     3577889999999999999999999999999999999999


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI  189 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  189 (342)
                      +.+|.++..+++|+.-|.++++.+|....+...++++
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            9999999999999999999999999877665555444

>KOG2796|consensus

Probab=98.86  E-value=2.3e-06  Score=65.78  Aligned_cols=155  Identities=13%  Similarity=0.121  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701         128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEA  206 (342)
Q Consensus       128 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  206 (342)
                      .+..++.+++-+.      .+.+.+..++.-.|.|.-....+.+.++.+ |.++.....+|.+.++.|+.+.|..+|+++
T Consensus       165 ~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v  238 (366)
T KOG2796|consen  165 EESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV  238 (366)
T ss_pred             hhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            3556666665543      356667888888899999999999999988 678888899999999999999999999976


Q ss_pred             HHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH
Q psy3701         207 LSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST  286 (342)
Q Consensus       207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  286 (342)
                      -+.+..-.                              .-.....+..+.+.++...+++.+|...+.+++..+|.++.+
T Consensus       239 ek~~~kL~------------------------------~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  239 EKVTQKLD------------------------------GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             HHHHhhhh------------------------------ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            64433221                              011113567778888888999999999999999999999999


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         287 FCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       287 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      ..+.+.|..-+|+..+|++..+.+++..|...
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            99999999999999999999999999999765

>KOG1586|consensus

Probab=98.84  E-value=1.5e-06  Score=65.53  Aligned_cols=136  Identities=14%  Similarity=0.068  Sum_probs=100.1

Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHH------HHHHHHHHHHh-cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFV------IHEMGVIAYQN-HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL  229 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      ++..++++|+.++++++++..+-...      +..+|.+|... .++++|+.+|+++-+......               
T Consensus        84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---------------  148 (288)
T KOG1586|consen   84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE---------------  148 (288)
T ss_pred             hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------------
Confidence            34458888888888888876554332      44788888765 899999999999877654442               


Q ss_pred             hhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch-------HHHHHHHHHHHHhCChHH
Q psy3701         230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA-------STFCCIGYIQALTGDLDS  302 (342)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~l~~~~~~~g~~~~  302 (342)
                                     ........+...+..-...++|.+|+..|++.....-++.       ..++.-|.|+.-..+.-.
T Consensus       149 ---------------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~  213 (288)
T KOG1586|consen  149 ---------------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVN  213 (288)
T ss_pred             ---------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHH
Confidence                           0001124566677777889999999999999887655443       345667888888899999


Q ss_pred             HHHHHHHHHhcccCchhHHh
Q psy3701         303 AVNYFHKTMALKRDDSFATT  322 (342)
Q Consensus       303 A~~~~~~al~~~p~~~~~~~  322 (342)
                      +...+++-.+++|.....+.
T Consensus       214 a~~ALeky~~~dP~F~dsRE  233 (288)
T KOG1586|consen  214 AQRALEKYQELDPAFTDSRE  233 (288)
T ss_pred             HHHHHHHHHhcCCcccccHH
Confidence            99999999999998776543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.81  E-value=9e-09  Score=66.31  Aligned_cols=72  Identities=29%  Similarity=0.345  Sum_probs=57.5

Q ss_pred             ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701         179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH  258 (342)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  258 (342)
                      -..++..+|.++..+|++++|+.+|++++++....+                             ...+..+.++.++|.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----------------------------~~~~~~a~~~~~lg~   54 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-----------------------------DDHPDTANTLNNLGE   54 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----------------------------THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-----------------------------CCCHHHHHHHHHHHH
Confidence            356789999999999999999999999998843331                             011122578999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHhh
Q psy3701         259 VNRKLKKYEEALEFHKQALVV  279 (342)
Q Consensus       259 ~~~~~g~~~~A~~~~~~al~~  279 (342)
                      ++...|++++|++++++++++
T Consensus        55 ~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   55 CYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999999875

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.81  E-value=2.9e-08  Score=82.79  Aligned_cols=69  Identities=16%  Similarity=0.092  Sum_probs=65.4

Q ss_pred             cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH---HHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST---FCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      ..|..+..++++|.+|...|+|++|+..|+++++++|++..+   |+++|.+|..+|+.++|+.++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            466778999999999999999999999999999999999854   999999999999999999999999997

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.81  E-value=2.3e-08  Score=83.41  Aligned_cols=71  Identities=17%  Similarity=0.079  Sum_probs=67.0

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH---HHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA---WLMYGHSFAVENEHDQAMAAYFNAFNLF  142 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~  142 (342)
                      ..+|+++..|+++|..++..|++++|+..|+++++++|++.++   |+++|.+|..+|++++|+.++++++++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3578999999999999999999999999999999999999865   9999999999999999999999999973

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.79  E-value=1.1e-08  Score=65.81  Aligned_cols=67  Identities=22%  Similarity=0.322  Sum_probs=53.2

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc----CCC---cHHHHHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL----DKL---FLPAWLMYGHSFAVENEHDQAMAAYFNAFNL  141 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  141 (342)
                      |+-+.++..+|.+|...|++++|+.+|++++++    .++   ...++..+|.++...|++++|++++++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            556778899999999999999999999999865    112   2456788888888889999998888888764

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.77  E-value=2.2e-07  Score=67.39  Aligned_cols=96  Identities=21%  Similarity=0.277  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh----------
Q psy3701         196 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK----------  265 (342)
Q Consensus       196 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------  265 (342)
                      ++.|.+.++.....+|.+                                    ++.+++.|.++..+.+          
T Consensus         7 FE~ark~aea~y~~nP~D------------------------------------adnL~~WG~ALLELAqfk~g~es~~m   50 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLD------------------------------------ADNLTNWGGALLELAQFKQGPESKKM   50 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-------------------------------------HHHHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHh------------------------------------HHHHHHHHHHHHHHHhccCcchHHHH
Confidence            577888888888888888                                    5788888888766543          


Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC-----------hHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGD-----------LDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      +++|+.-|++++.++|+..++++++|.++...+.           |++|..+|+++.+.+|++...+..|..+
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            5678889999999999999999999999986653           7889999999999999999877766544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4555|consensus

Probab=98.72  E-value=8.5e-07  Score=60.42  Aligned_cols=97  Identities=23%  Similarity=0.189  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      +-..|..+...|+.+.|++.|.+++.+.|..                                    +.+|++.+.++.-
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------------------------------------aSayNNRAQa~RL   89 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPER------------------------------------ASAYNNRAQALRL   89 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccc------------------------------------hHhhccHHHHHHH
Confidence            4456788889999999999999999999999                                    5899999999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         263 LKKYEEALEFHKQALVVAPMKA----STFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                      +|+.++|+.-+++++++..+..    .++...|.+|...|+-+.|...|+.+-++..
T Consensus        90 q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen   90 QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            9999999999999999865433    5688899999999999999999999877643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.70  E-value=7.8e-07  Score=64.62  Aligned_cols=96  Identities=20%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC----------hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701         162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN----------YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH  231 (342)
Q Consensus       162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  231 (342)
                      ++.|.+.++.....+|.+++.+++-|.++..+.+          +++|+.-|++++.++|+.                  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~------------------   68 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK------------------   68 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-------------------
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch------------------
Confidence            5667777777777777777777777777665533          467888888889999988                  


Q ss_pred             hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701         232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-----------YEEALEFHKQALVVAPMKASTFCCIGYI  293 (342)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~l~~~  293 (342)
                                        ..++.++|+++...+.           |++|..+|+++...+|++......|..+
T Consensus        69 ------------------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   69 ------------------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                              5888888888876654           7889999999999999987655554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4555|consensus

Probab=98.69  E-value=5.8e-07  Score=61.22  Aligned_cols=99  Identities=14%  Similarity=0.022  Sum_probs=77.8

Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH  231 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  231 (342)
                      -|......|+.+.|++.|.+++.+.|..+.++++.+..+.-+|+.++|+.-+.+++++.....                 
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-----------------  111 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-----------------  111 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc-----------------
Confidence            466677778888888888888888888888888888888888888888888888888765442                 


Q ss_pred             hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701         232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM  282 (342)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  282 (342)
                                     .....++...|.+|...|+.+.|..-|+.+-++...
T Consensus       112 ---------------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  112 ---------------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             ---------------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence                           111357778888888888888888888888776554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.67  E-value=9.3e-06  Score=68.40  Aligned_cols=208  Identities=10%  Similarity=-0.011  Sum_probs=139.7

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC-------------------
Q psy3701          83 AVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK-------------------  143 (342)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------  143 (342)
                      .+..-..+..+.+.-++..++|++++|+.+.+|..|+.-.  .....+|..+++++++...                   
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            4445556677888888888888888888888888877521  2234555556655554411                   


Q ss_pred             ----C--CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh-hhcC
Q psy3701         144 ----G--CHLPALYVGLECGLTNNARLASKFFDLALSIAHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKV-KQLG  214 (342)
Q Consensus       144 ----~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~  214 (342)
                          .  ...+...+|++..+.|+.++|++.++..++..|.  +..++.++..++...++|.++...+.+.-++. |++ 
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS-  329 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS-  329 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch-
Confidence                0  1233456899999999999999999999988775  45688999999999999999999988853221 222 


Q ss_pred             ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH-------------Hhh---hHHHHHHHHHHHHh
Q psy3701         215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR-------------KLK---KYEEALEFHKQALV  278 (342)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g---~~~~A~~~~~~al~  278 (342)
                                                         +...+.-+..-.             +.|   --..|++.+.+|++
T Consensus       330 -----------------------------------Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve  374 (539)
T PF04184_consen  330 -----------------------------------ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE  374 (539)
T ss_pred             -----------------------------------HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH
Confidence                                               222222222111             111   12357889999999


Q ss_pred             hCCCchHHHHHHH------HHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         279 VAPMKASTFCCIG------YIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       279 ~~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      .+|.-+..+..+-      .-..+.|+ .+|+.+---.++.-.+-+.+...|.-..+
T Consensus       375 fNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~lL~~twe  430 (539)
T PF04184_consen  375 FNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNLLHCTWE  430 (539)
T ss_pred             hCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHHHHHHhc
Confidence            9998776544321      12345565 78888877777777667777777776665

The molecular function of this protein is uncertain.

>KOG2610|consensus

Probab=98.66  E-value=8e-06  Score=65.19  Aligned_cols=165  Identities=14%  Similarity=-0.030  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc-CCCCch---HHHHHHHHH
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL-FKGCHL---PALYVGLEC  156 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~---~~~~l~~~~  156 (342)
                      ....+.+.+..|++.+|...+++.++-.|.+.-++..--.++..+|+...-...+++.+.. +|+.|-   ..-.++..+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3444566778899999999999999999999888888788888999999999999999877 666543   333466778


Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK  236 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                      ...|-+++|.+.-+++++++|.+..+....+.++...|++.++.+...+.-..-...        |..            
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--------~ml------------  245 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--------WML------------  245 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--------hHH------------
Confidence            889999999999999999999999999999999999999999999887754332221        000            


Q ss_pred             HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701         237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL  277 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  277 (342)
                                  ...-|-..+.++...+.|+.|++.|.+-+
T Consensus       246 ------------asHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  246 ------------ASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             ------------HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence                        02334456777777888888888887654

>KOG1585|consensus

Probab=98.65  E-value=4.3e-05  Score=58.33  Aligned_cols=200  Identities=12%  Similarity=0.026  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HHHHHHhhhHHHhhccHHHHHHHHHHHhccC-----CCCc
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-----KGCH  146 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~  146 (342)
                      ...+..-+.+|...+++++|..++.++.+-..++      ..++-..+........+.++..+++++..+.     |+..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            3445555677777888999999888888544333      2345566777778888889999999888763     2222


Q ss_pred             hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         147 LPALYVGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      ..-...+--.....++++|+++|++++.+...+      .+.+...+.++.+..++++|-..+.+-........      
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~------  184 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD------  184 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh------
Confidence            222223333556678999999999988765443      23456678888899999998888777544332220      


Q ss_pred             chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHH
Q psy3701         221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA----PMKASTFCCIGYIQAL  296 (342)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~  296 (342)
                                              .-+.....+.....++....+|..|...++...++.    |++..+..+|-.. +.
T Consensus       185 ------------------------~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd  239 (308)
T KOG1585|consen  185 ------------------------AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YD  239 (308)
T ss_pred             ------------------------hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hc
Confidence                                    011112345555666777789999999999977653    4445555555444 35


Q ss_pred             hCChHHHHHHHH
Q psy3701         297 TGDLDSAVNYFH  308 (342)
Q Consensus       297 ~g~~~~A~~~~~  308 (342)
                      .|+.++....+.
T Consensus       240 ~gD~E~~~kvl~  251 (308)
T KOG1585|consen  240 EGDIEEIKKVLS  251 (308)
T ss_pred             cCCHHHHHHHHc
Confidence            677776665543

>KOG4507|consensus

Probab=98.64  E-value=2.2e-06  Score=73.18  Aligned_cols=77  Identities=18%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      ....+++.++...|-..+|-.++.+++.+....+-.++.+|..+..+.+.+.|++.|++++..+|+++.....|..+
T Consensus       643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            45678999999999999999999999999988889999999999999999999999999999999999877665443

>KOG2471|consensus

Probab=98.63  E-value=1.4e-06  Score=72.75  Aligned_cols=150  Identities=18%  Similarity=0.140  Sum_probs=116.7

Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH-HHhhhhcCccccccchhhHHHHh
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA-LSKVKQLGGEIIADKWEPLLNNL  229 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      +....+..+.+...+..-.+.+..+..+.+......+..++..|++.+|.+.+... +...|...               
T Consensus       211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~---------------  275 (696)
T KOG2471|consen  211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT---------------  275 (696)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc---------------
Confidence            34445666777777777777777777888888999999999999999999887653 11111110               


Q ss_pred             hhhHHHHHHHhchhccCCC--ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---------CC---------CchHHHHH
Q psy3701         230 GHKAEDKVKQLGGEIIADK--WEPLLNNLGHVNRKLKKYEEALEFHKQALVV---------AP---------MKASTFCC  289 (342)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~~---------~~~~~~~~  289 (342)
                                     ..|.  ....|+++|.+++++|.|.-+..+|.++++.         .|         ....+.++
T Consensus       276 ---------------~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN  340 (696)
T KOG2471|consen  276 ---------------ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN  340 (696)
T ss_pred             ---------------ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh
Confidence                           0110  1346789999999999999999999999961         11         23478899


Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         290 IGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       290 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      .|..|...|++-.|.++|.+++.....+|..|..|+.|.-.
T Consensus       341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988754

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.62  E-value=3.8e-06  Score=68.32  Aligned_cols=138  Identities=15%  Similarity=0.106  Sum_probs=98.2

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh-hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701         114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL-TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (342)
                      +|..+.....+.+..+.|...|.++.+..+.....|...|.+... .++.+.|.++|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            567777777777888888888888886666667777777777555 4555558888888888888888888888888888


Q ss_pred             hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH
Q psy3701         193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF  272 (342)
Q Consensus       193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (342)
                      .|+.+.|..+|++++..-+...                                 ....+|......-.+.|+.+.....
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~---------------------------------~~~~iw~~~i~fE~~~Gdl~~v~~v  129 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEK---------------------------------QSKKIWKKFIEFESKYGDLESVRKV  129 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHH---------------------------------HCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchh---------------------------------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888888888877654441                                 0134677777777777888888888


Q ss_pred             HHHHHhhCCCch
Q psy3701         273 HKQALVVAPMKA  284 (342)
Q Consensus       273 ~~~al~~~~~~~  284 (342)
                      .+++.+..|+..
T Consensus       130 ~~R~~~~~~~~~  141 (280)
T PF05843_consen  130 EKRAEELFPEDN  141 (280)
T ss_dssp             HHHHHHHTTTS-
T ss_pred             HHHHHHHhhhhh
Confidence            877777777643

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2610|consensus

Probab=98.61  E-value=6.5e-06  Score=65.68  Aligned_cols=165  Identities=12%  Similarity=0.027  Sum_probs=134.5

Q ss_pred             hhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh-CCCC---hHHHHHHHHHHHHh
Q psy3701         118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI-AHED---PFVIHEMGVIAYQN  193 (342)
Q Consensus       118 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~  193 (342)
                      -+.+....|++.+|-..+.+.++..|.+..++..--..+...|+...-...+++++.. +|+-   ..+.-.++..+.+.
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            4456677899999999999999999999999888888999999999999999999876 6665   45566788889999


Q ss_pred             cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q psy3701         194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFH  273 (342)
Q Consensus       194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  273 (342)
                      |-|++|.+..+++++++|.+                                    ..+....+.++...|++.++.++.
T Consensus       189 g~y~dAEk~A~ralqiN~~D------------------------------------~Wa~Ha~aHVlem~~r~Keg~eFM  232 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFD------------------------------------CWASHAKAHVLEMNGRHKEGKEFM  232 (491)
T ss_pred             ccchhHHHHHHhhccCCCcc------------------------------------hHHHHHHHHHHHhcchhhhHHHHH
Confidence            99999999999999999988                                    578888999999999999999998


Q ss_pred             HHHHhhCCCc----hHHHHHHHHHHHHhCChHHHHHHHHHHH--hcccCch
Q psy3701         274 KQALVVAPMK----ASTFCCIGYIQALTGDLDSAVNYFHKTM--ALKRDDS  318 (342)
Q Consensus       274 ~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~  318 (342)
                      .+.-..-...    ..-|..-+.++...+.++.|.+.|.+-+  ++..++.
T Consensus       233 ~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  233 YKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             HhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence            7753221111    1234556778888899999999998654  3444454

>KOG2796|consensus

Probab=98.60  E-value=1.1e-05  Score=62.24  Aligned_cols=135  Identities=8%  Similarity=-0.056  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcC-CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC------CCchHHHH
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLD-KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK------GCHLPALY  151 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~  151 (342)
                      .+.+.+..++...|.|.-....+.+.++.+ |..+.....+|.+.++.|+.+.|..++++.-+...      ....+...
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            456777888889999999999999999988 56777888999999999999999999996554321      23345556


Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      .+.++.-.+++.+|...+.+++..+|.++.+-++.|.|....|+..+|++.++.+++..|..
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            78888889999999999999999999999999999999999999999999999999999876

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.58  E-value=0.00023  Score=58.30  Aligned_cols=203  Identities=11%  Similarity=-0.045  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      +-++..-+..-.-.|+++.|.+-|+..+. +|+. .-.+..|-.-....|..+.|+.+-+++....|.-+.++...-...
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r  198 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR  198 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence            33444446666677777777777776654 2321 111222222334567777777777777777777776666666666


Q ss_pred             hhhCCHHHHHHHHHHHHhh---CCCChH-----HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701         157 GLTNNARLASKFFDLALSI---AHEDPF-----VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN  228 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~---~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      +..|+++.|++..+.....   .++...     .+...+... -..+...|...-.++.++.|+..              
T Consensus       199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlv--------------  263 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLV--------------  263 (531)
T ss_pred             HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccc--------------
Confidence            7777777777777655432   222111     111111111 12345666666677777766652              


Q ss_pred             hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------------------------
Q psy3701         229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL-------------------------------  277 (342)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------------------  277 (342)
                                            ..-..-+..+++.|+..++-..++.+.                               
T Consensus       264 ----------------------Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L  321 (531)
T COG3898         264 ----------------------PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKL  321 (531)
T ss_pred             ----------------------hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                                  233333333344444443333333333                               


Q ss_pred             -hhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         278 -VVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       278 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                       ++.|++.+.....+..-..-|++..|..--+.+....|...
T Consensus       322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres  363 (531)
T COG3898         322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES  363 (531)
T ss_pred             HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh
Confidence             34566666667777777777777777777777777777543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.57  E-value=7.2e-06  Score=66.71  Aligned_cols=135  Identities=10%  Similarity=0.015  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh-hccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV-ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      -+|..+.....+.+..+.|...|.+|.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3677777778888888889999999887666677888888888666 566666899999999888888888888888888


Q ss_pred             hhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         158 LTNNARLASKFFDLALSIAHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      ..|+.+.|..+|++++..-|...   .+|......-...|+.+...++.+++.+..|..
T Consensus        82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            88889999999998888766554   577777777888888888888888888877765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.57  E-value=1.7e-07  Score=52.52  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      .++..+|.+|...|++++|++.|+++++.+|+++.++..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            345556666666666666666666666666666665555543

>KOG3617|consensus

Probab=98.56  E-value=1.6e-05  Score=70.85  Aligned_cols=171  Identities=8%  Similarity=-0.056  Sum_probs=109.7

Q ss_pred             hhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701          26 LQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT  105 (342)
Q Consensus        26 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  105 (342)
                      ++.-....+|-.++.......+.+-|.-++-...........++.. .+|++  .-...+....++|-.++|...|.+.-
T Consensus       751 I~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~-q~~~e--~eakvAvLAieLgMlEeA~~lYr~ck  827 (1416)
T KOG3617|consen  751 IQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ-QNGEE--DEAKVAVLAIELGMLEEALILYRQCK  827 (1416)
T ss_pred             HHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH-hCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3333445677778888888888887777665543333333333332 34432  23345667778889999999998865


Q ss_pred             hcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH----------hh
Q psy3701         106 SLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL----------SI  175 (342)
Q Consensus       106 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------~~  175 (342)
                      ..        -.+-..|...|.+++|.+..+.--++.  -...++..+..+...++.+.|+++|+++-          .-
T Consensus       828 R~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e  897 (1416)
T KOG3617|consen  828 RY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE  897 (1416)
T ss_pred             HH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence            43        345567778888888887655432222  12456777888888888888888888652          12


Q ss_pred             CC----------CChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701         176 AH----------EDPFVIHEMGVIAYQNHNYTVAENCFMEALSK  209 (342)
Q Consensus       176 ~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  209 (342)
                      +|          .++..|...|..+...|+.+.|+.+|..+-..
T Consensus       898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~  941 (1416)
T KOG3617|consen  898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY  941 (1416)
T ss_pred             ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence            22          24455666777777788888888888776443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.52  E-value=2.1e-07  Score=52.10  Aligned_cols=42  Identities=33%  Similarity=0.517  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH  120 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~  120 (342)
                      .++..+|..|...|++++|++.|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            567777888888888888888888888888888887777764

>KOG1914|consensus

Probab=98.50  E-value=0.00021  Score=60.93  Aligned_cols=46  Identities=13%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701          60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT  105 (342)
Q Consensus        60 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  105 (342)
                      .++....+++++...|..+.+|.......+..++|+.-...|.+++
T Consensus        35 ~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL   80 (656)
T KOG1914|consen   35 IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL   80 (656)
T ss_pred             HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4566666666666667666666666666666666766666666654

>KOG2053|consensus

Probab=98.50  E-value=4.3e-05  Score=68.65  Aligned_cols=125  Identities=11%  Similarity=0.006  Sum_probs=108.8

Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF  168 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  168 (342)
                      ...+++.+|.....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+-.+-.+|..+|+.++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            35678999999999999999999999999999999999999999888887777788888888899999999999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      |+++...+|+ ......+-.+|.+.+.|.+-.+.--+..+..|..+
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            9999999998 77788888888888888776666666666777774

>KOG4642|consensus

Probab=98.50  E-value=2.9e-07  Score=69.55  Aligned_cols=95  Identities=13%  Similarity=0.037  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN  160 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  160 (342)
                      +..-|..++...+|+.|+.+|.+++.++|..+..|.+.+.++++..+++.+....++++++.|+...+.+.+|.......
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            34456777778888999999999999999988888899999999999999999999999999998888889999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q psy3701         161 NARLASKFFDLALSI  175 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~  175 (342)
                      .+++|+..+.++..+
T Consensus        93 ~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   93 GYDEAIKVLQRAYSL  107 (284)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999888654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.50  E-value=0.00018  Score=59.89  Aligned_cols=118  Identities=8%  Similarity=-0.031  Sum_probs=69.6

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhc----CCCcHHHHHHhhhHHHh---hccHHHHHHHHHH-HhccCCCCchH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSL----DKLFLPAWLMYGHSFAV---ENEHDQAMAAYFN-AFNLFKGCHLP  148 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~~~~~~~  148 (342)
                      ++++...+-..|....+|+.-++..+..-.+    -++.+.+...+|.++.+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3455556666677777777777777665554    33445556666666666   6777777777777 33444455666


Q ss_pred             HHHHHHHHhhh---------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC
Q psy3701         149 ALYVGLECGLT---------NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN  195 (342)
Q Consensus       149 ~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (342)
                      +...|.+|...         ...++|+..|.++.+.+|+ ...-.+++.++...|.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence            66666665432         2355666666666666643 2233344444444443

>KOG4642|consensus

Probab=98.50  E-value=2.6e-06  Score=64.49  Aligned_cols=98  Identities=14%  Similarity=0.011  Sum_probs=90.4

Q ss_pred             HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701         117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY  196 (342)
Q Consensus       117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (342)
                      .-|..+....+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+....++++++.|+....++.+|.+......|
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            34666777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhcC
Q psy3701         197 TVAENCFMEALSKVKQLG  214 (342)
Q Consensus       197 ~~A~~~~~~al~~~~~~~  214 (342)
                      ++|+..++++..+....+
T Consensus        95 ~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   95 DEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             cHHHHHHHHHHHHHhcCC
Confidence            999999999987765553

>KOG1586|consensus

Probab=98.50  E-value=0.00011  Score=55.81  Aligned_cols=176  Identities=14%  Similarity=0.118  Sum_probs=122.6

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS-AIAWYAVGCYYYLIGRSDPARRFLGKATSLDK  109 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  109 (342)
                      .+.++..-|+.|....++..|-..|-++-     .+..+  ..+.++ +..+...+.+ ++.++.++|+.++++++++..
T Consensus        33 Aadl~~~Aan~yklaK~w~~AG~aflkaA-----~~h~k--~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt  104 (288)
T KOG1586|consen   33 AAELYERAANMYKLAKNWSAAGDAFLKAA-----DLHLK--AGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYT  104 (288)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHh--cCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHH
Confidence            34455556677777777777777776642     11111  112233 3444444555 455699999999999999876


Q ss_pred             CcHH------HHHHhhhHHHhh-ccHHHHHHHHHHHhccCCCCc------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhC
Q psy3701         110 LFLP------AWLMYGHSFAVE-NEHDQAMAAYFNAFNLFKGCH------LPALYVGLECGLTNNARLASKFFDLALSIA  176 (342)
Q Consensus       110 ~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  176 (342)
                      +...      .+..+|.+|... .++++|+.+|+++-+......      ..+...+..-...++|.+|+..|++.....
T Consensus       105 ~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  105 DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6543      355788888766 899999999999987754421      234456677778899999999999988776


Q ss_pred             CCChH-------HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         177 HEDPF-------VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       177 ~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      -+++-       .++.-|.|++-..+.-.+...+++..+++|...
T Consensus       185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            66543       245567777777888888888888888888763

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.43  E-value=8.2e-05  Score=61.79  Aligned_cols=176  Identities=13%  Similarity=-0.037  Sum_probs=124.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhcc----CCCCchHHHHHHHHHhh---hCCHHHHHHHHHH-HHhhCCCChHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNL----FKGCHLPALYVGLECGL---TNNARLASKFFDL-ALSIAHEDPFVI  183 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~~  183 (342)
                      ++....+-.+|....+|+.-++..+..-.+    -+..+.....+|.++.+   .|+.++|++.+.. .....+.+++.+
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            556677777899999999999999888776    45566777788999888   8999999999999 555667789999


Q ss_pred             HHHHHHHHHh---------cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701         184 HEMGVIAYQN---------HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN  254 (342)
Q Consensus       184 ~~l~~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (342)
                      ..+|.+|-..         ...++|+..|.++.+.+|+.                                     ..-.
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-------------------------------------Y~GI  263 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-------------------------------------YSGI  263 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-------------------------------------cchH
Confidence            9999998542         24688999999999998655                                     2333


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHH--------h----hCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQAL--------V----VAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT  322 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al--------~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  322 (342)
                      |++.++...|...+...-.++..        +    ..-.+......++.+..-.|++++|++.+++++.+.|..-....
T Consensus       264 N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~S  343 (374)
T PF13281_consen  264 NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELES  343 (374)
T ss_pred             HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHH
Confidence            44444444443222221111111        1    11233445566778888899999999999999999876654443


Q ss_pred             HH
Q psy3701         323 ML  324 (342)
Q Consensus       323 ~l  324 (342)
                      .+
T Consensus       344 t~  345 (374)
T PF13281_consen  344 TL  345 (374)
T ss_pred             HH
Confidence            33

>KOG0545|consensus

Probab=98.42  E-value=1.6e-05  Score=60.68  Aligned_cols=122  Identities=20%  Similarity=0.201  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC--ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG--GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG  257 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  257 (342)
                      ..++..-|.-++..|+|.+|...|+.|+..-.+-.  +......|..+                    ......++.+++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eL--------------------dk~~tpLllNy~  237 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLEL--------------------DKMITPLLLNYC  237 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHH--------------------HHhhhHHHHhHH
Confidence            34567788888999999999999988876432221  00000111110                    111245888999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701         258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT  321 (342)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  321 (342)
                      .|+...|+|-++++.....+...|.+..+++..|.+....=+.++|...|.++++++|.-..+.
T Consensus       238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999765443

>KOG0530|consensus

Probab=98.42  E-value=0.00016  Score=55.93  Aligned_cols=241  Identities=8%  Similarity=-0.009  Sum_probs=150.7

Q ss_pred             ccHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHhhcCCCcHHHHHHhh
Q psy3701          46 ENRALAADCYKGALL-----ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYG  119 (342)
Q Consensus        46 ~~~~~A~~~~~~~~~-----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la  119 (342)
                      .+|.+++.+|+..+.     ..|+.+.+.++..+|.+..+|...-.+...++ +..+-++++...++-+|++-.+|...-
T Consensus        40 e~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr  119 (318)
T KOG0530|consen   40 EDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR  119 (318)
T ss_pred             hhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH
Confidence            456666666666542     56667777777888888888777766666554 567777788888888888888887777


Q ss_pred             hHHHhhccHH-HHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-c---
Q psy3701         120 HSFAVENEHD-QAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN-H---  194 (342)
Q Consensus       120 ~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---  194 (342)
                      .+....|++. .-++..+.++..+..+..+|...-.+...-+.++.-+.+..+.++.+-.+..+|+..-.+.... |   
T Consensus       120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~  199 (318)
T KOG0530|consen  120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVIS  199 (318)
T ss_pred             HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCcc
Confidence            7777777776 6777778888877777778887777777777788888888888877766666665432222221 1   


Q ss_pred             --ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH-hh--hHHHH
Q psy3701         195 --NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK-LK--KYEEA  269 (342)
Q Consensus       195 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A  269 (342)
                        ..+.-+.+..+.+...|.+                                    ..+|..|.-++.. .|  .+.+-
T Consensus       200 ~~~le~El~yt~~~I~~vP~N------------------------------------eSaWnYL~G~l~~d~gl~s~s~v  243 (318)
T KOG0530|consen  200 KAELERELNYTKDKILLVPNN------------------------------------ESAWNYLKGLLELDSGLSSDSKV  243 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC------------------------------------ccHHHHHHHHHHhccCCcCCchH
Confidence              1233455666667777776                                    4677777766664 33  23334


Q ss_pred             HHHHHHHH-hhCCCchHHHHHHHHHHH------HhCChH---HHHHHHHHHH-hcccCchhHHh
Q psy3701         270 LEFHKQAL-VVAPMKASTFCCIGYIQA------LTGDLD---SAVNYFHKTM-ALKRDDSFATT  322 (342)
Q Consensus       270 ~~~~~~al-~~~~~~~~~~~~l~~~~~------~~g~~~---~A~~~~~~al-~~~p~~~~~~~  322 (342)
                      .......+ +.....+..+-.+...|.      +.+.-+   +|...|+..- +.+|-...-|.
T Consensus       244 v~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~  307 (318)
T KOG0530|consen  244 VSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWR  307 (318)
T ss_pred             HHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            44444443 333344555555555552      122222   4555555543 56664444443

>KOG1585|consensus

Probab=98.41  E-value=4.2e-05  Score=58.43  Aligned_cols=170  Identities=12%  Similarity=0.067  Sum_probs=119.8

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch------HHHHHHHHHhhhCCHHHHHHHHHHHHhhC-----CCChHH
Q psy3701         114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL------PALYVGLECGLTNNARLASKFFDLALSIA-----HEDPFV  182 (342)
Q Consensus       114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~  182 (342)
                      .+..-+.+|....++++|..++.++.+-...+..      ++-..+.....+..+.++..+++++....     |+....
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm  112 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM  112 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence            3445567888889999999999999865544332      23335666777789999999999998753     333333


Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      -...+--..+.-++++|+.+|++++.+-....                              ......+.+...++++.+
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve~~d------------------------------r~~ma~el~gk~sr~lVr  162 (308)
T KOG1585|consen  113 ALEKAAKALENVKPDDALQLYQRALAVVEEDD------------------------------RDQMAFELYGKCSRVLVR  162 (308)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc------------------------------hHHHHHHHHHHhhhHhhh
Confidence            44445555677789999999999988765552                              111113577778899999


Q ss_pred             hhhHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         263 LKKYEEALEFHKQALVV------APMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      ..++.+|-..+.+-...      .++....+.....++....++..|..+++...++
T Consensus       163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence            99999998888775432      2333345556666677778999999999987665

>KOG0985|consensus

Probab=98.40  E-value=0.00071  Score=62.18  Aligned_cols=200  Identities=13%  Similarity=0.062  Sum_probs=115.0

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      .+.+|..+|.+..+.|...+|++.|-++     +++..+.....+..+.|.|++-+.++..+.+.... +..-..+...|
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAY 1176 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHH
Confidence            4556666666666666666666666553     34455555555556666666666655555443322 22222334444


Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK  236 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                      .+.++..+-.+..     ..|+... ....|.-++..|.|+.|.-+|..                               
T Consensus      1177 Akt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~------------------------------- 1219 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN------------------------------- 1219 (1666)
T ss_pred             HHhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH-------------------------------
Confidence            4455444433322     1232222 23445555555555554444432                               


Q ss_pred             HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC-------------------------CchHHHHHHH
Q psy3701         237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP-------------------------MKASTFCCIG  291 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------~~~~~~~~l~  291 (342)
                                   ..-|..++..+..+|+|+.|...-+++-....                         -+++-+-.+.
T Consensus      1220 -------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli 1286 (1666)
T KOG0985|consen 1220 -------------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELI 1286 (1666)
T ss_pred             -------------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHH
Confidence                         23556677777777777777777666532110                         0123344566


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         292 YIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       292 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ..|...|-+++-+..++.++.+..-+-..+..|+.++.++.
T Consensus      1287 ~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred             HHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence            77888899999999999999998888888888888877653

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.39  E-value=4.5e-05  Score=64.40  Aligned_cols=168  Identities=15%  Similarity=0.128  Sum_probs=122.6

Q ss_pred             HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC------------------
Q psy3701         117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE------------------  178 (342)
Q Consensus       117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------  178 (342)
                      .+..-..+..+...-++.-++|++++|+.+.++..++.-.  .....+|+++++++++....                  
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            4445556788889999999999999999999988876532  23456677777776653210                  


Q ss_pred             ---C----hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701         179 ---D----PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP  251 (342)
Q Consensus       179 ---~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
                         +    ..+...+|.+..+.|+.++|++.++..++..|...                                  ...
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~----------------------------------~l~  296 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD----------------------------------NLN  296 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----------------------------------hhh
Confidence               1    23456789999999999999999999999887631                                  146


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHH-hCC---------------hHHHHHHHHHHHhcc
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVV-APMKASTFCCIGYIQAL-TGD---------------LDSAVNYFHKTMALK  314 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al~~~  314 (342)
                      +..++..++..++.|.++...+.+--.. -|+.+...+..+.+-.+ .++               -..|.+...+|++.+
T Consensus       297 IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN  376 (539)
T PF04184_consen  297 IRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN  376 (539)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence            8899999999999999999999886433 25556655555554332 121               234778899999999


Q ss_pred             cCchhH
Q psy3701         315 RDDSFA  320 (342)
Q Consensus       315 p~~~~~  320 (342)
                      |.-+.-
T Consensus       377 PHVp~Y  382 (539)
T PF04184_consen  377 PHVPKY  382 (539)
T ss_pred             CCCchh
Confidence            977743

The molecular function of this protein is uncertain.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.35  E-value=5.3e-07  Score=46.97  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=31.3

Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701         272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN  305 (342)
Q Consensus       272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  305 (342)
                      +|+++++++|+++.+|+++|.++...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999863

>KOG3616|consensus

Probab=98.32  E-value=0.0002  Score=63.45  Aligned_cols=157  Identities=16%  Similarity=0.096  Sum_probs=100.2

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGAL-LADLFKLAHELVDLYPDSAIAW-YAVGCYYYLIGRSDPARRFLGKATSLD  108 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~~~~~~A~~~~~~a~~~~  108 (342)
                      +.+++-.-|..+.+..++++|+++|+++. +.+|+.+.+-+   .|.....+ -..|.-+...|+++.|+..|-.+-.  
T Consensus       660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa---fp~evv~lee~wg~hl~~~~q~daainhfiea~~--  734 (1636)
T KOG3616|consen  660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA---FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--  734 (1636)
T ss_pred             hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh---CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--
Confidence            34555557888888899999999999985 34555555433   34433222 3457778888999999988866422  


Q ss_pred             CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701         109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGV  188 (342)
Q Consensus       109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  188 (342)
                            ...-........++.+|+..+...-..... ...+-.++.-|...|+++-|.+.|.++-.        ...-..
T Consensus       735 ------~~kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~  799 (1636)
T KOG3616|consen  735 ------LIKAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAID  799 (1636)
T ss_pred             ------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHH
Confidence                  122223344556777777776655433221 22344577778888888888888876522        223345


Q ss_pred             HHHHhcChhHHHHHHHHHH
Q psy3701         189 IAYQNHNYTVAENCFMEAL  207 (342)
Q Consensus       189 ~~~~~~~~~~A~~~~~~al  207 (342)
                      +|.+.|+|++|.+.-+++.
T Consensus       800 my~k~~kw~da~kla~e~~  818 (1636)
T KOG3616|consen  800 MYGKAGKWEDAFKLAEECH  818 (1636)
T ss_pred             HHhccccHHHHHHHHHHhc
Confidence            6677888888877766654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.31  E-value=4.6e-07  Score=47.19  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=16.8

Q ss_pred             HHHHhhcCCCcHHHHHHhhhHHHhhccHHHHH
Q psy3701         101 LGKATSLDKLFLPAWLMYGHSFAVENEHDQAM  132 (342)
Q Consensus       101 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  132 (342)
                      |+++++++|+++.+|+.+|.++...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555543

>KOG2300|consensus

Probab=98.30  E-value=0.00073  Score=57.01  Aligned_cols=258  Identities=15%  Similarity=0.091  Sum_probs=165.8

Q ss_pred             hhhhcccchhhhhhhhhhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------HHH
Q psy3701           9 QELLGGEGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS--------AIA   80 (342)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~--------~~~   80 (342)
                      ..++|.-....+.|+.+.  .+.+-++...-.--+..|-+++|.++-++++     ...+++ +..|..        ...
T Consensus       254 e~ilgsps~~l~~wlpke--qicaLV~l~tv~hsm~~gy~~~~~K~tDe~i-----~q~ekl-kq~d~~srilsm~km~~  325 (629)
T KOG2300|consen  254 EKILGSPSPILFEWLPKE--QICALVYLVTVIHSMPAGYFKKAQKYTDEAI-----KQTEKL-KQADLMSRILSMFKMIL  325 (629)
T ss_pred             ccccCCCChHHHhhccHh--hhHhhhhhhHHhhhhhhHHHHHHHHHHHHHH-----HHHhhc-ccccchhHHHHHHHHHH
Confidence            445666666666665532  2333343333333345566777776555443     333332 222212        223


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhc---CCC-------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---ch
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSL---DKL-------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HL  147 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~  147 (342)
                      +-.+..|-.-.|++.+|++....+.+.   .|.       .+..++.+|.-....|.++.|...|..+.+.....   ..
T Consensus       326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~  405 (629)
T KOG2300|consen  326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF  405 (629)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence            445667777889999999988877664   343       24467788888888999999999999999876542   23


Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC----------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHED----------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI  217 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  217 (342)
                      ...++|.+|.+.|+-+.-.+.++..   .|.+          ..+++..|...+.++++.+|...+.+.++.....+   
T Consensus       406 ~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed---  479 (629)
T KOG2300|consen  406 CNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED---  479 (629)
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh---
Confidence            4456899999988776655555543   4432          23567788888999999999999999998762221   


Q ss_pred             cccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC---CCchHH---HHHHH
Q psy3701         218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA---PMKAST---FCCIG  291 (342)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~~~---~~~l~  291 (342)
                                                 ...-.+..+..+|.+....|+..++.+..+-+++..   |+.+..   ..-+-
T Consensus       480 ---------------------------~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~  532 (629)
T KOG2300|consen  480 ---------------------------LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILT  532 (629)
T ss_pred             ---------------------------HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHH
Confidence                                       011113466778999999999999999988888765   444432   23345


Q ss_pred             HHHHHhCC--hHHHHHHH
Q psy3701         292 YIQALTGD--LDSAVNYF  307 (342)
Q Consensus       292 ~~~~~~g~--~~~A~~~~  307 (342)
                      .++...|+  .+...+.|
T Consensus       533 ~L~~a~g~~~~~~e~e~~  550 (629)
T KOG2300|consen  533 DLYQALGEKGNEMENEAF  550 (629)
T ss_pred             HHHHHhCcchhhHHHHHH
Confidence            66677777  44444444

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.29  E-value=0.0019  Score=56.65  Aligned_cols=162  Identities=14%  Similarity=0.082  Sum_probs=121.1

Q ss_pred             hHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH--------HH--h--hhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701         120 HSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL--------EC--G--LTNNARLASKFFDLALSIAHEDPFVIHEMG  187 (342)
Q Consensus       120 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~--------~~--~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  187 (342)
                      .+.--.|+-+.+++.+.++.+. ++-......+..        .+  .  .....+.|.+.+.......|+..-..+..|
T Consensus       196 ~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g  274 (468)
T PF10300_consen  196 SFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG  274 (468)
T ss_pred             hhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3334568999999999998773 321111111111        11  1  345788899999999999999999999999


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      +++...|+.++|++.|++++.....-+                                ......++.+|.++..+++|+
T Consensus       275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~--------------------------------Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  275 RLERLKGNLEEAIESFERAIESQSEWK--------------------------------QLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             HHHHHhcCHHHHHHHHHHhccchhhHH--------------------------------hHHHHHHHHHHHHHHHHchHH
Confidence            999999999999999999885332221                                111357889999999999999


Q ss_pred             HHHHHHHHHHhhCCCc-hHHHHHHHHHHHHhCCh-------HHHHHHHHHHHhcc
Q psy3701         268 EALEFHKQALVVAPMK-ASTFCCIGYIQALTGDL-------DSAVNYFHKTMALK  314 (342)
Q Consensus       268 ~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~  314 (342)
                      +|..++.+..+.+.-. ....+..|.++...|+.       ++|.+.|.++-.+.
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999865533 34456788899999999       88999998886543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.28  E-value=1.8e-06  Score=45.27  Aligned_cols=31  Identities=23%  Similarity=0.554  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                      +|+.+|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.25  E-value=2.8e-06  Score=44.54  Aligned_cols=33  Identities=21%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701         285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  317 (342)
                      .+++.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            345566666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.24  E-value=0.0014  Score=55.65  Aligned_cols=128  Identities=14%  Similarity=0.115  Sum_probs=95.8

Q ss_pred             CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHH
Q psy3701         177 HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNL  256 (342)
Q Consensus       177 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (342)
                      ......|...+.+..+.|+++.|...+.++....+...                                ...+.+....
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~--------------------------------~~~~~v~~e~  190 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE--------------------------------SLLPRVFLEY  190 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc--------------------------------CCCcchHHHH
Confidence            34566788899999999999999999998887664431                                0124566777


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhC-C-C--------------------------------chHHHHHHHHHHHHh-----
Q psy3701         257 GHVNRKLKKYEEALEFHKQALVVA-P-M--------------------------------KASTFCCIGYIQALT-----  297 (342)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~al~~~-~-~--------------------------------~~~~~~~l~~~~~~~-----  297 (342)
                      +..+...|+..+|+..++..+... . .                                ...++..+|......     
T Consensus       191 akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~  270 (352)
T PF02259_consen  191 AKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLS  270 (352)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccc
Confidence            888888888888888888777611 0 0                                123456666666666     


Q ss_pred             -CChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcCC
Q psy3701         298 -GDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESP  336 (342)
Q Consensus       298 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  336 (342)
                       +..+++...|+++++++|+...++..++.......+..+
T Consensus       271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence             888899999999999999999999999988887766554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0551|consensus

Probab=98.24  E-value=0.00016  Score=57.90  Aligned_cols=106  Identities=14%  Similarity=0.090  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-SAIAWYAVGCYYYLIGRSDPARRFLGKATSLD  108 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  108 (342)
                      ..+.-+-.-|+-|++..+|..|+.+|.+++-.+         ..+|+ ++..|.+.+.+.+..|+|..|+....+++..+
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---------c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~  149 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---------CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK  149 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---------CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            345555568999999999999999999985111         12333 46778889999999999999999999999999


Q ss_pred             CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC
Q psy3701         109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG  144 (342)
Q Consensus       109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  144 (342)
                      |.+..+++.-+.++....++++|...++..+.++..
T Consensus       150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  150 PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999999999999999999999999888776654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.23  E-value=0.0013  Score=55.92  Aligned_cols=173  Identities=14%  Similarity=0.027  Sum_probs=113.9

Q ss_pred             CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC----CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc
Q psy3701         142 FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH----EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI  217 (342)
Q Consensus       142 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  217 (342)
                      .......+...+.+..+.|+++.|...+.++....+    ..+.+....+.++...|+..+|+..++..+......... 
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~-  220 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID-  220 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc-
Confidence            334456778889999999999999999999887652    256788889999999999999999999888733222100 


Q ss_pred             cccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh------hhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701         218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL------KKYEEALEFHKQALVVAPMKASTFCCIG  291 (342)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~l~  291 (342)
                       ...............................+.++..+|......      +..++++..|.++++.+|....+|+..|
T Consensus       221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a  299 (352)
T PF02259_consen  221 -SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA  299 (352)
T ss_pred             -cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence             000000000000000000000000001111246777788877777      8899999999999999999999999998


Q ss_pred             HHHHHhCC-----------------hHHHHHHHHHHHhcccC
Q psy3701         292 YIQALTGD-----------------LDSAVNYFHKTMALKRD  316 (342)
Q Consensus       292 ~~~~~~g~-----------------~~~A~~~~~~al~~~p~  316 (342)
                      ..+...-+                 ...|+..|-+++...|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  300 LFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            88764311                 13488888888888877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0376|consensus

Probab=98.23  E-value=3e-06  Score=70.87  Aligned_cols=97  Identities=16%  Similarity=0.123  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHH
Q psy3701          53 DCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM  132 (342)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  132 (342)
                      +.|....++.|+.+|.++++.+|+++..+-+.+..+.+.+++..|+..+.++++.+|....+|+..|.+....+++.+|+
T Consensus        13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~   92 (476)
T KOG0376|consen   13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL   92 (476)
T ss_pred             hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence            33333344444555555555555554444444555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhccCCCCchHH
Q psy3701         133 AAYFNAFNLFKGCHLPA  149 (342)
Q Consensus       133 ~~~~~al~~~~~~~~~~  149 (342)
                      ..|++.....|+.+.+.
T Consensus        93 ~~l~~~~~l~Pnd~~~~  109 (476)
T KOG0376|consen   93 LDLEKVKKLAPNDPDAT  109 (476)
T ss_pred             HHHHHhhhcCcCcHHHH
Confidence            55555555555444433

>KOG0376|consensus

Probab=98.22  E-value=2.2e-06  Score=71.66  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=99.3

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh
Q psy3701         185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK  264 (342)
Q Consensus       185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  264 (342)
                      ..+.-.+.-+.++.|+..|.++++++|+.                                    +..+.+.+.++.+.+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnc------------------------------------a~~~anRa~a~lK~e   52 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNC------------------------------------AIYFANRALAHLKVE   52 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcc------------------------------------eeeechhhhhheeec
Confidence            44566677889999999999999999998                                    467788889999999


Q ss_pred             hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       265 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      ++..|+.-+.++++.+|....+++..|.+....+++.+|...|+....+.|+++.+...+..|-.
T Consensus        53 ~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   53 SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888876643

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.20  E-value=4.2e-06  Score=43.83  Aligned_cols=33  Identities=39%  Similarity=0.558  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK  283 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  283 (342)
                      .+|+++|.++..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            589999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0551|consensus

Probab=98.19  E-value=2.7e-05  Score=62.09  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701         181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN  260 (342)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  260 (342)
                      .-+-.-|.-|++.++|..|+..|.+.++..-.++                                ...+..|.+.+-+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~--------------------------------dlnavLY~NRAAa~  129 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP--------------------------------DLNAVLYTNRAAAQ  129 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc--------------------------------cHHHHHHhhHHHHH
Confidence            3455678888888899999999999888765542                                22356888888888


Q ss_pred             HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhH
Q psy3701         261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA  320 (342)
Q Consensus       261 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  320 (342)
                      ...|+|..|+.-+.+++..+|.+..+++.-+.|+..+.++++|..+++..++++.+...+
T Consensus       130 ~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  130 LYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            899999999999999999999999999988999999999888888888877765544443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.18  E-value=4.2e-06  Score=43.86  Aligned_cols=34  Identities=38%  Similarity=0.617  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      +.+|+.+|.+++..|++++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3566777777777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.16  E-value=0.00013  Score=63.87  Aligned_cols=154  Identities=17%  Similarity=0.140  Sum_probs=117.9

Q ss_pred             hCChHHHHHHHHHHhhcCCCc-HHH------HHHhhhHHH----hhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701          91 IGRSDPARRFLGKATSLDKLF-LPA------WLMYGHSFA----VENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT  159 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  159 (342)
                      .||-+.+++.+.++.+...-. +-+      |+.....+.    .....+.|.+.+....+..|+.....+..|+++...
T Consensus       201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~  280 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK  280 (468)
T ss_pred             CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            478899999999987732211 111      111111111    345678899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701         160 NNARLASKFFDLALSIAHE----DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED  235 (342)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                      |+.++|++.+++++.....    ..-.++.+|.++..+++|++|..++.+..+.+.-+.                     
T Consensus       281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk---------------------  339 (468)
T PF10300_consen  281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK---------------------  339 (468)
T ss_pred             cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH---------------------
Confidence            9999999999998853322    234578899999999999999999999998765553                     


Q ss_pred             HHHHhchhccCCCChHHHHHHHHHHHHhhhH-------HHHHHHHHHHHhh
Q psy3701         236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKY-------EEALEFHKQALVV  279 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~al~~  279 (342)
                                    +...+..|.++...|+.       ++|.+.+.++-..
T Consensus       340 --------------a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  340 --------------AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             --------------HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence                          45667788889999988       8888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=0.00062  Score=53.93  Aligned_cols=135  Identities=9%  Similarity=-0.108  Sum_probs=99.7

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH--H
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG--L  154 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~--~  154 (342)
                      ..+.-+..+.-....|++.+|...|..+++..|++.++...++.++...|+.+.|...+...-....... .....+  .
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~  211 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIE  211 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHH
Confidence            4455566677788899999999999999999999999999999999999999999888765433322211 111111  2


Q ss_pred             HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      .+.+.....+. ..+++.+..+|++...-+.++..+...|+.++|.+.+-..++.+...
T Consensus       212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~  269 (304)
T COG3118         212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF  269 (304)
T ss_pred             HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            22233333322 23455567799999999999999999999999999998888876554

>KOG0545|consensus

Probab=98.13  E-value=3.4e-05  Score=58.88  Aligned_cols=103  Identities=13%  Similarity=0.012  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------CCCcH----------HHHHHhhhHHHhhccHHHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSL--------DKLFL----------PAWLMYGHSFAVENEHDQAMAAYFNAF  139 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al  139 (342)
                      ..++...|+-++..|+|.+|...|..|+..        .|..+          ..+.++..|+...|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            456778899999999999999999888642        33332          346677778888888888888888888


Q ss_pred             ccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh
Q psy3701         140 NLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP  180 (342)
Q Consensus       140 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  180 (342)
                      ...|++..+++..|.++...=+.++|..-|.++++++|.-.
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            88888888888888887777788888888888888777543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.04  E-value=0.0057  Score=51.50  Aligned_cols=140  Identities=12%  Similarity=0.055  Sum_probs=86.0

Q ss_pred             HHHHHHhcC-hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHH------------HHhchhccCC---CCh
Q psy3701         187 GVIAYQNHN-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKV------------KQLGGEIIAD---KWE  250 (342)
Q Consensus       187 ~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~---~~~  250 (342)
                      |.-+.+.|. -++|+..++.+++..+.+.     .....+..-....+..++            ........++   ...
T Consensus       386 Ak~lW~~g~~dekalnLLk~il~ft~yD~-----ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~  460 (549)
T PF07079_consen  386 AKHLWEIGQCDEKALNLLKLILQFTNYDI-----ECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE  460 (549)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHhccccH-----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence            444455565 6788899988888877662     111111111111111111            1111122222   223


Q ss_pred             HHHHHHH--HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC----chhHHhHH
Q psy3701         251 PLLNNLG--HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD----DSFATTML  324 (342)
Q Consensus       251 ~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l  324 (342)
                      +.-+.++  ..+...|+|.++.-+-.=..++.| ++.++..+|.+.....+|++|..++...   .|+    +..+...+
T Consensus       461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl  536 (549)
T PF07079_consen  461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKAL  536 (549)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHH
Confidence            3334443  446788999999999888889999 8999999999999999999999998754   333    23455566


Q ss_pred             HHHHHHhhhcC
Q psy3701         325 SYVIEQLIEES  335 (342)
Q Consensus       325 ~~~~~~~~~~~  335 (342)
                      ..|.+...++.
T Consensus       537 ~lCqKh~~kd~  547 (549)
T PF07079_consen  537 ALCQKHLPKDL  547 (549)
T ss_pred             HHHHHhhhhhh
Confidence            66666665543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4507|consensus

Probab=98.03  E-value=0.00024  Score=61.26  Aligned_cols=103  Identities=23%  Similarity=0.166  Sum_probs=62.4

Q ss_pred             HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh-chhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701         190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL-GGEIIADKWEPLLNNLGHVNRKLKKYEE  268 (342)
Q Consensus       190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~  268 (342)
                      ....|+...|++++..++...|... .++......++...+-.. ++...+ .........+..++.+|+++..+.+.+.
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~-~v~~v~la~~~~~~~~~~-da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~  694 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQ-DVPLVNLANLLIHYGLHL-DATKLLLQALAINSSEPLTFLSLGNAYLALKNISG  694 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhh-cccHHHHHHHHHHhhhhc-cHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence            3446777777777777777666542 112222222222222111 111111 1112223335788899999999999999


Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHH
Q psy3701         269 ALEFHKQALVVAPMKASTFCCIGYIQ  294 (342)
Q Consensus       269 A~~~~~~al~~~~~~~~~~~~l~~~~  294 (342)
                      |++.|+.++..+|+++.+...+-.+-
T Consensus       695 a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  695 ALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            99999999999999987765554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.03  E-value=0.00073  Score=49.28  Aligned_cols=111  Identities=18%  Similarity=0.176  Sum_probs=76.4

Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcC-ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLG-GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      |......++.+.++..+++++.+..... .......|......  .....             ...+...++..+...|+
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~--~l~~~-------------~~~~~~~l~~~~~~~~~   77 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERE--RLREL-------------YLDALERLAEALLEAGD   77 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHH--HHHHH-------------HHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHH--HHHHH-------------HHHHHHHHHHHHHhccC
Confidence            4445566788888888888888765543 11111223221110  00000             13577778888999999


Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      +++|+..+++++..+|.+..++..+..++...|+..+|+..|++..+
T Consensus        78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1914|consensus

Probab=97.96  E-value=0.0078  Score=51.84  Aligned_cols=215  Identities=13%  Similarity=0.040  Sum_probs=148.7

Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHhCC--------------hHHHHHHHHHHhhcC-CCcHHHHHHhhhHHHhhc---
Q psy3701          65 KLAHELVDLYPDSAIAWYAVGCYYYLIGR--------------SDPARRFLGKATSLD-KLFLPAWLMYGHSFAVEN---  126 (342)
Q Consensus        65 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g---  126 (342)
                      -.+++++..-+..+++|+..+..+...++              .+++..+|++++... ..+...++.++..-...-   
T Consensus       266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n  345 (656)
T KOG1914|consen  266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN  345 (656)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence            44455556666778888877766666665              678888888887643 233444555554332222   


Q ss_pred             cHHHHHHHHHHHhccCCCCc-hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHhcChhHHHHHHH
Q psy3701         127 EHDQAMAAYFNAFNLFKGCH-LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI-AYQNHNYTVAENCFM  204 (342)
Q Consensus       127 ~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~  204 (342)
                      .++.....+.+++.....++ .++..+-..-.+..-...|..+|.++-+..-....++..-|.+ |...++.+-|...|+
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe  425 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE  425 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence            36677778888877654433 3444555556666778888889988876544444555555544 456789999999999


Q ss_pred             HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Q psy3701         205 EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV--APM  282 (342)
Q Consensus       205 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~  282 (342)
                      -.++..++.+                                    ..-......+...++-..|...|++++..  .++
T Consensus       426 LGLkkf~d~p------------------------------------~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~  469 (656)
T KOG1914|consen  426 LGLKKFGDSP------------------------------------EYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD  469 (656)
T ss_pred             HHHHhcCCCh------------------------------------HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence            9999998884                                    55556667778889999999999999987  332


Q ss_pred             -chHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         283 -KASTFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       283 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                       ...+|..+-..-..-|+....++.=++-....|
T Consensus       470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence             346787777777788888888887777666666

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.0027  Score=50.50  Aligned_cols=155  Identities=12%  Similarity=-0.036  Sum_probs=109.4

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHH
Q psy3701          37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWL  116 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  116 (342)
                      ..+.-....|++.+|...|..+            +...|++.++...++.++...|+.+.|...+...-....... ...
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~a------------l~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~  205 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQA------------LQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHG  205 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHH------------HHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHH
Confidence            4455566667777777777775            688999999999999999999999999988877543332221 111


Q ss_pred             Hhh--hHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHH
Q psy3701         117 MYG--HSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH--EDPFVIHEMGVIAYQ  192 (342)
Q Consensus       117 ~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~  192 (342)
                      ..+  ..+.+.....+. ..+++.+..+|++..+.+.++..+...|+.++|.+.+-..++.+.  .+..+...+-.++..
T Consensus       206 l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~  284 (304)
T COG3118         206 LQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA  284 (304)
T ss_pred             HHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence            111  222222222222 345566778999999999999999999999999999999988754  355667777777777


Q ss_pred             hcChhHHHHHHHH
Q psy3701         193 NHNYTVAENCFME  205 (342)
Q Consensus       193 ~~~~~~A~~~~~~  205 (342)
                      .|.-+.+...+++
T Consensus       285 ~g~~Dp~~~~~RR  297 (304)
T COG3118         285 FGPADPLVLAYRR  297 (304)
T ss_pred             cCCCCHHHHHHHH
Confidence            7765555555554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.90  E-value=2.6e-05  Score=40.77  Aligned_cols=32  Identities=31%  Similarity=0.625  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                      .+|+.+|.++..+|++++|..+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34566666666666666666666666666663

...

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.89  E-value=0.0026  Score=47.30  Aligned_cols=94  Identities=15%  Similarity=-0.057  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701          82 YAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      ..++..+...+++++|+..++.++....+.   .-+-.+++++...+|.+++|+..+...-...- .+...-..|.++..
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~  171 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHH
Confidence            445566666666666666666665433221   22344556666666666666655443321100 01112234555555


Q ss_pred             hCCHHHHHHHHHHHHhhC
Q psy3701         159 TNNARLASKFFDLALSIA  176 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~  176 (342)
                      .|+-++|+..|++++...
T Consensus       172 kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         172 KGDKQEARAAYEKALESD  189 (207)
T ss_pred             cCchHHHHHHHHHHHHcc
Confidence            555555555555555554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.88  E-value=0.0029  Score=53.34  Aligned_cols=144  Identities=13%  Similarity=0.050  Sum_probs=111.1

Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------------CCC------------cH---HHHHHhhh
Q psy3701          70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--------------DKL------------FL---PAWLMYGH  120 (342)
Q Consensus        70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------~~~------------~~---~~~~~la~  120 (342)
                      ++..+|-+.+++..++.++..+|+.+.|.+++++|+-.              ++.            |-   .+.+....
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            45779999999999999999999999999999988532              111            11   23556677


Q ss_pred             HHHhhccHHHHHHHHHHHhccCCC-CchHHHHH-HHHHhhhCCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHh
Q psy3701         121 SFAVENEHDQAMAAYFNAFNLFKG-CHLPALYV-GLECGLTNNARLASKFFDLALSIAH-----EDPFVIHEMGVIAYQN  193 (342)
Q Consensus       121 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~  193 (342)
                      .+.+.|-+..|.+..+-.+.++|. ++...... =....+.++++--++.++.......     .-|...+..+.+++..
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l  191 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL  191 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence            888999999999999999999999 77655554 4445566788877887777655211     1235567778888888


Q ss_pred             cCh---------------hHHHHHHHHHHHhhhhc
Q psy3701         194 HNY---------------TVAENCFMEALSKVKQL  213 (342)
Q Consensus       194 ~~~---------------~~A~~~~~~al~~~~~~  213 (342)
                      ++-               ++|...+++|+...|..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  192 EKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             cCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            888               89999999999999876

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.85  E-value=0.01  Score=48.92  Aligned_cols=185  Identities=17%  Similarity=0.185  Sum_probs=126.2

Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh----ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh----hC
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE----NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL----TN  160 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~  160 (342)
                      ...+++..+...+.++-...  ++.....++.++...    .+..+|...|+.+.  ....+.+.+.+|.++..    ..
T Consensus        52 ~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~  127 (292)
T COG0790          52 AYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL  127 (292)
T ss_pred             cccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence            34566777777777765522  235566666666543    35677888887443  34456677778887776    44


Q ss_pred             CHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhc-------ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701         161 NARLASKFFDLALSIAHED-PFVIHEMGVIAYQNH-------NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK  232 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  232 (342)
                      +..+|..+|+++....-.. ......+|.++..-.       +...|...|.++-...  +                   
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~-------------------  186 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N-------------------  186 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C-------------------
Confidence            8888888888887764333 234677777776542       2236777777766554  2                   


Q ss_pred             HHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC----------
Q psy3701         233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG----------  298 (342)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g----------  298 (342)
                                       ..+...+|.+|..    ..++.+|..+|.++-+...  ...++.++ ++...|          
T Consensus       187 -----------------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~  246 (292)
T COG0790         187 -----------------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLT  246 (292)
T ss_pred             -----------------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcc
Confidence                             4678888888854    3488999999999998776  77888888 666665          


Q ss_pred             -----ChHHHHHHHHHHHhcccCch
Q psy3701         299 -----DLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       299 -----~~~~A~~~~~~al~~~p~~~  318 (342)
                           +...|..++..+....+...
T Consensus       247 ~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         247 AAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             cccCCCHHHHHHHHHHHHHcCChhH
Confidence                 78888999988887765444

>KOG1550|consensus

Probab=97.85  E-value=0.02  Score=51.62  Aligned_cols=270  Identities=17%  Similarity=0.107  Sum_probs=171.1

Q ss_pred             HHHHHHHHHhHHHHh-----hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-----ChHHHHH
Q psy3701          30 MKSALLLLKGRVYEA-----LENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-----RSDPARR   99 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~   99 (342)
                      -.....+.+|.++..     ..|.+.|+.+|+.+...     +.+....  ..+.+.+.+|.+|.+..     +...|..
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~-----~~~~a~~--~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~  314 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES-----FKKAATK--GLPPAQYGLGRLYLQGLGVEKIDYEKALK  314 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH-----HHHHHhh--cCCccccHHHHHHhcCCCCccccHHHHHH
Confidence            344455566666654     36889999999987421     1111111  25567889999998854     6788999


Q ss_pred             HHHHHhhcCCCcHHHHHHhhhHHHhhc---cHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh----CCHHHHHHHHHHH
Q psy3701         100 FLGKATSLDKLFLPAWLMYGHSFAVEN---EHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT----NNARLASKFFDLA  172 (342)
Q Consensus       100 ~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~  172 (342)
                      +|.++-...  ++++.+.+|.++....   +...|..+|..+...  .+..+.+.++.+|..-    .+...|..++.++
T Consensus       315 ~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~a  390 (552)
T KOG1550|consen  315 LYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKA  390 (552)
T ss_pred             HHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence            999998775  4677888898887766   578999999999765  4567888888887643    4889999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHh-cChhHHHHHHHHHHHhhhhcCccccccchhhHHHH---hhh----hHHHHHHHhchhc
Q psy3701         173 LSIAHEDPFVIHEMGVIAYQN-HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN---LGH----KAEDKVKQLGGEI  244 (342)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~  244 (342)
                      -+..  ++.+...++..+... +++..+...+.......-...  .....+......   ..+    ......... ...
T Consensus       391 A~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~--q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~a  465 (552)
T KOG1550|consen  391 AEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVA--QSNAAYLLDQSEEDLFSRGVISTLERAFSLY-SRA  465 (552)
T ss_pred             HHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHH--hhHHHHHHHhccccccccccccchhHHHHHH-HHH
Confidence            8877  455555555554433 777766665555444332221  000000000000   000    000000000 011


Q ss_pred             cCCCChHHHHHHHHHHHHh----hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh---CChHHHHHHHHHHHhcccCc
Q psy3701         245 IADKWEPLLNNLGHVNRKL----KKYEEALEFHKQALVVAPMKASTFCCIGYIQALT---GDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       245 ~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~  317 (342)
                      .......+...+|.+|..-    .+++.|...|.++....   ....+++|.++..-   .+...|.+++.++.+.+.+.
T Consensus       466 ~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~  542 (552)
T KOG1550|consen  466 AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA  542 (552)
T ss_pred             HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence            2233356777778777654    45899999999998776   88889999888631   12789999999998876644


Q ss_pred             h
Q psy3701         318 S  318 (342)
Q Consensus       318 ~  318 (342)
                      .
T Consensus       543 ~  543 (552)
T KOG1550|consen  543 Y  543 (552)
T ss_pred             h
Confidence            3

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.84  E-value=0.0016  Score=48.31  Aligned_cols=61  Identities=21%  Similarity=0.092  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-ASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      +-..++.+...+|++++|+..+.....  +.. +..-...|.++...|+.++|+..|+++++..
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            444555666666666666555544321  111 2233445666666666666666666666655

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.84  E-value=0.0039  Score=51.96  Aligned_cols=135  Identities=10%  Similarity=-0.005  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH---hcChhHHHHHHH
Q psy3701         128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ---NHNYTVAENCFM  204 (342)
Q Consensus       128 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~  204 (342)
                      .+.-+..+++|++.+|++...+..+-....+..+.++..+-+++++..+|+++.+|...-.....   .-.++.....|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            35567778888888888777777777777777788888888888888888888887665444333   234677888888


Q ss_pred             HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701         205 EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA  280 (342)
Q Consensus       205 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  280 (342)
                      +++..-.......     .........             .......++..+.....+.|..+.|+..++-.++.+
T Consensus       127 ~~l~~L~~~~~~~-----~~~~~~~~~-------------~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  127 KCLRALSRRRSGR-----MTSHPDLPE-------------LEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHhhccc-----cccccchhh-------------HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            8877544331000     000000000             001113566777788889999999999999999875

>KOG0530|consensus

Probab=97.84  E-value=0.0082  Score=46.83  Aligned_cols=206  Identities=12%  Similarity=0.057  Sum_probs=151.5

Q ss_pred             HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh-ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHH-H
Q psy3701          87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE-NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNAR-L  164 (342)
Q Consensus        87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~-~  164 (342)
                      +..+...-+.|++....++.++|.+-.+|...-.++..+ .+..+-++++.+.++-+|.+..+|...-.+....|++. .
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r  131 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR  131 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence            444556778999999999999999988887776666554 46788899999999999999999999988888899888 8


Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhc
Q psy3701         165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI  244 (342)
Q Consensus       165 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
                      -++..+.++..+..+..+|...-.+...-+.|+.-+.+..+.++.+-.+.                              
T Consensus       132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN------------------------------  181 (318)
T KOG0530|consen  132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN------------------------------  181 (318)
T ss_pred             hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc------------------------------
Confidence            88999999999999999999999999999999999999999999887663                              


Q ss_pred             cCCCChHHHHHHHHHH------HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH-hC--ChHHHHHHHHHHH-hcc
Q psy3701         245 IADKWEPLLNNLGHVN------RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL-TG--DLDSAVNYFHKTM-ALK  314 (342)
Q Consensus       245 ~~~~~~~~~~~l~~~~------~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~al-~~~  314 (342)
                            .+|...-.+.      ...-..+.-+.+..+.+...|++..+|..|.-++.. .|  ...+-........ +..
T Consensus       182 ------SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~  255 (318)
T KOG0530|consen  182 ------SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLP  255 (318)
T ss_pred             ------chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccC
Confidence                  1222110000      011233455677788888999999999888877775 44  1233333333333 333


Q ss_pred             cCchhHHhHHHHHH
Q psy3701         315 RDDSFATTMLSYVI  328 (342)
Q Consensus       315 p~~~~~~~~l~~~~  328 (342)
                      -..|.....|..++
T Consensus       256 ~~sP~lla~l~d~~  269 (318)
T KOG0530|consen  256 KRSPFLLAFLLDLY  269 (318)
T ss_pred             CCChhHHHHHHHHH
Confidence            34455444444444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.84  E-value=0.00065  Score=49.53  Aligned_cols=117  Identities=10%  Similarity=-0.072  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH-HHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701          82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH-DQAMAAYFNAFNLFKGCHLPALYVGLECGLTN  160 (342)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  160 (342)
                      ...|......++.+.++..+++++.+.....-.-..-       ..+ ......++..      ...+...++..+...|
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~   76 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAG   76 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence            3345555666777888888888877643321100000       000 1111111111      1224455777788899


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701         161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVK  211 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  211 (342)
                      ++++|+..+++++..+|.+..++..+..++...|+..+|+..|++....-.
T Consensus        77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998866543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1308|consensus

Probab=97.76  E-value=4.8e-05  Score=61.02  Aligned_cols=92  Identities=15%  Similarity=0.039  Sum_probs=71.5

Q ss_pred             HHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHH
Q psy3701          86 CYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLA  165 (342)
Q Consensus        86 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  165 (342)
                      .-.+..|.+++|++.|.+++.++|.....+...+.++...++...|+..+..+++++|+....+-+.+.....+|++.+|
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            34455677888888888888888888777888888888888888888888888888888777777778888888888888


Q ss_pred             HHHHHHHHhhCC
Q psy3701         166 SKFFDLALSIAH  177 (342)
Q Consensus       166 ~~~~~~~~~~~~  177 (342)
                      ...+..+.+++-
T Consensus       202 a~dl~~a~kld~  213 (377)
T KOG1308|consen  202 AHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHhccc
Confidence            888887777653

>KOG0985|consensus

Probab=97.75  E-value=0.013  Score=54.34  Aligned_cols=222  Identities=14%  Similarity=0.021  Sum_probs=151.3

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      .++|..+|.+....|...+|++.|-++                 +++..+........+.|.|++-++++..+-+.... 
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika-----------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E- 1165 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE- 1165 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc-----------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-
Confidence            467778888888888888888888885                 35566778888889999999999999887664322 


Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      +..-..+..+|.+.++..+-.+..     ..|+ ..-....|.-++..|.|+.|.-.|..        ..-|..++..+.
T Consensus      1166 ~~id~eLi~AyAkt~rl~elE~fi-----~gpN-~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1166 PYIDSELIFAYAKTNRLTELEEFI-----AGPN-VANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLV 1231 (1666)
T ss_pred             ccchHHHHHHHHHhchHHHHHHHh-----cCCC-chhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHH
Confidence            333345556677777776655542     2344 33345578888888999988877764        344778999999


Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE  271 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (342)
                      .+|+|+.|+...+++-.          ...|....+..-+..+-.+.+.-....- -.++-+-.+...|...|-+++-+.
T Consensus      1232 ~LgeyQ~AVD~aRKAns----------~ktWK~VcfaCvd~~EFrlAQiCGL~ii-vhadeLeeli~~Yq~rGyFeElIs 1300 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANS----------TKTWKEVCFACVDKEEFRLAQICGLNII-VHADELEELIEYYQDRGYFEELIS 1300 (1666)
T ss_pred             HHHHHHHHHHHhhhccc----------hhHHHHHHHHHhchhhhhHHHhcCceEE-EehHhHHHHHHHHHhcCcHHHHHH
Confidence            99999999998887633          2234443333333222222222111110 013455667788889999999999


Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHH
Q psy3701         272 FHKQALVVAPMKASTFCCIGYIQAL  296 (342)
Q Consensus       272 ~~~~al~~~~~~~~~~~~l~~~~~~  296 (342)
                      .++.++.+..-+...+..+|.+|.+
T Consensus      1301 l~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1301 LLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHHhhhchhHHHHHHHHHHHHHHHh
Confidence            9999988877676667777777654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.74  E-value=6.5e-05  Score=39.17  Aligned_cols=32  Identities=41%  Similarity=0.648  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPM  282 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  282 (342)
                      .+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57899999999999999999999999999885

...

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.74  E-value=0.016  Score=47.26  Aligned_cols=160  Identities=15%  Similarity=0.066  Sum_probs=105.5

Q ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCc----HHHHHHHHHHHHHhC-ChHHHHHHHHHHhhcC----C--
Q psy3701          42 YEALENRALAADCYKGALLADLFKLAHELV-DLYPDS----AIAWYAVGCYYYLIG-RSDPARRFLGKATSLD----K--  109 (342)
Q Consensus        42 ~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~-~~~p~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~----~--  109 (342)
                      ...+|+++.|..++.++.         ... ..+|+.    ...+++.|......+ +++.|..+++++.+.-    +  
T Consensus         3 A~~~~~~~~A~~~~~K~~---------~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~   73 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAK---------DLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD   73 (278)
T ss_pred             chhhCCHHHHHHHHHHhh---------hHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc
Confidence            457899999999999974         111 335543    457788899999999 9999999999998772    1  


Q ss_pred             -Cc-------HHHHHHhhhHHHhhccHH---HHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC-
Q psy3701         110 -LF-------LPAWLMYGHSFAVENEHD---QAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH-  177 (342)
Q Consensus       110 -~~-------~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-  177 (342)
                       ..       ..++..++.++...+.++   +|....+.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+ 
T Consensus        74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~  153 (278)
T PF08631_consen   74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH  153 (278)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc
Confidence             11       234677888888877654   455566666666677676665555555558899999999999887654 


Q ss_pred             CChHHHHHHHHH-HHHhcChhHHHHHHHHHHHhh
Q psy3701         178 EDPFVIHEMGVI-AYQNHNYTVAENCFMEALSKV  210 (342)
Q Consensus       178 ~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~~  210 (342)
                      .....-..+..+ .........|...+...+...
T Consensus       154 ~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r  187 (278)
T PF08631_consen  154 SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNR  187 (278)
T ss_pred             ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence            222221222222 112234456777777666543

It is also involved in sporulation [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.72  E-value=0.0046  Score=51.53  Aligned_cols=147  Identities=10%  Similarity=-0.087  Sum_probs=112.0

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHhCC------------hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHH
Q psy3701          67 AHELVDLYPDSAIAWYAVGCYYYLIGR------------SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA  134 (342)
Q Consensus        67 ~~~~~~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  134 (342)
                      +++.+..+|.+..+|..+....-..-.            .+.-+..+++|++.+|++...+..+-.+.....+.++..+.
T Consensus         8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~   87 (321)
T PF08424_consen    8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK   87 (321)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            344578899999999999876654432            45667889999999999999999888888889999999999


Q ss_pred             HHHHhccCCCCchHHHHHHHHHhh---hCCHHHHHHHHHHHHhhCCC------------------ChHHHHHHHHHHHHh
Q psy3701         135 YFNAFNLFKGCHLPALYVGLECGL---TNNARLASKFFDLALSIAHE------------------DPFVIHEMGVIAYQN  193 (342)
Q Consensus       135 ~~~al~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~  193 (342)
                      +++++..+|++...|...-.....   .-.++.....|.+++..-..                  -..++..+.......
T Consensus        88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a  167 (321)
T PF08424_consen   88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA  167 (321)
T ss_pred             HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence            999999999988777664333222   23566777777777653210                  123456677778889


Q ss_pred             cChhHHHHHHHHHHHhhhhc
Q psy3701         194 HNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       194 ~~~~~A~~~~~~al~~~~~~  213 (342)
                      |-.+.|+..++-.++.+=-.
T Consensus       168 G~~E~Ava~~Qa~lE~n~~~  187 (321)
T PF08424_consen  168 GYTERAVALWQALLEFNFFR  187 (321)
T ss_pred             CchHHHHHHHHHHHHHHcCC
Confidence            99999999999999987433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.70  E-value=0.00034  Score=40.30  Aligned_cols=46  Identities=11%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      .++.+|..+.++|++++|..+.+.++++.|++..+......+-.+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            4566777777777777777777777777777777766655554443

>KOG1308|consensus

Probab=97.66  E-value=6e-05  Score=60.49  Aligned_cols=95  Identities=14%  Similarity=-0.019  Sum_probs=86.9

Q ss_pred             hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhH
Q psy3701         119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV  198 (342)
Q Consensus       119 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (342)
                      +.-....|.++.|++.|..++.++|.....+...+.++.++++...|+.-+..++.++|+...-+-..|.....+|+|++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            33455678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhc
Q psy3701         199 AENCFMEALSKVKQL  213 (342)
Q Consensus       199 A~~~~~~al~~~~~~  213 (342)
                      |...+..+.+++-+.
T Consensus       201 aa~dl~~a~kld~dE  215 (377)
T KOG1308|consen  201 AAHDLALACKLDYDE  215 (377)
T ss_pred             HHHHHHHHHhccccH
Confidence            999999998876544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.64  E-value=0.03  Score=47.42  Aligned_cols=216  Identities=10%  Similarity=0.052  Sum_probs=139.8

Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc---
Q psy3701          65 KLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---  141 (342)
Q Consensus        65 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  141 (342)
                      -++++++.--|-.++.|+-........++-++|+...++++...|.   ....++.++...++.+.-..+|++..+.   
T Consensus       289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r  365 (660)
T COG5107         289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR  365 (660)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence            3445556667778888988888888899999999999998888876   4556666666666655555555544322   


Q ss_pred             ---------------CCCC-ch-----------HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHh
Q psy3701         142 ---------------FKGC-HL-----------PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI-AYQN  193 (342)
Q Consensus       142 ---------------~~~~-~~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  193 (342)
                                     +|.. ++           ++...-..-.+..-.+.|...|-++-+..-..+.++..-|.+ +...
T Consensus       366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~  445 (660)
T COG5107         366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT  445 (660)
T ss_pred             HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence                           1100 00           111111222333445666777776655432334444444433 4557


Q ss_pred             cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q psy3701         194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFH  273 (342)
Q Consensus       194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  273 (342)
                      |++.-|-..|+-.+...|+++                                    ..-...-..+...++-..|...|
T Consensus       446 ~d~~ta~~ifelGl~~f~d~~------------------------------------~y~~kyl~fLi~inde~naraLF  489 (660)
T COG5107         446 GDRATAYNIFELGLLKFPDST------------------------------------LYKEKYLLFLIRINDEENARALF  489 (660)
T ss_pred             CCcchHHHHHHHHHHhCCCch------------------------------------HHHHHHHHHHHHhCcHHHHHHHH
Confidence            888888888888888888874                                    23333444566788889999999


Q ss_pred             HHHHhhCCCc--hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         274 KQALVVAPMK--ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       274 ~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      ++++..-...  ..+|..+-..-..-|+...+...=++..++.|....
T Consensus       490 etsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~  537 (660)
T COG5107         490 ETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL  537 (660)
T ss_pred             HHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence            9887654333  456666666667778888888888888888886543

>KOG1258|consensus

Probab=97.62  E-value=0.039  Score=48.35  Aligned_cols=120  Identities=10%  Similarity=-0.027  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH---HHhhhhHHHH-HHHhchhccCCCChHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL---NNLGHKAEDK-VKQLGGEIIADKWEPLLNN  255 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  255 (342)
                      ...|......-...|+++...-.|++++--.....     ..|....   ...+...-.. ..........+..+.+...
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-----efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~  371 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-----EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL  371 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-----HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence            34677777777889999999999999887655542     2222111   1111111111 0011112233444556666


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHH
Q psy3701         256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV  304 (342)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  304 (342)
                      -+..-...|++..|...+++..+..|+...+-........+.|+.+.+.
T Consensus       372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            6666777788888888888888777777777666677777777777777

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.59  E-value=8.7e-05  Score=39.24  Aligned_cols=25  Identities=24%  Similarity=0.598  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701         287 FCCIGYIQALTGDLDSAVNYFHKTM  311 (342)
Q Consensus       287 ~~~l~~~~~~~g~~~~A~~~~~~al  311 (342)
                      +.++|.+|...|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555543

>KOG1258|consensus

Probab=97.58  E-value=0.046  Score=47.97  Aligned_cols=191  Identities=12%  Similarity=-0.027  Sum_probs=146.5

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-CCCchHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-KGCHLPALYVGLE  155 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~  155 (342)
                      +...|......-...|+++...-.|++++--.....+.|...+.-....|+.+-|-..+.++.+.. |..+.....-+..
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            456777888888899999999999999998888889999999999999999999999998888875 5667777778888


Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHH-hhhhcCccccccchhhHHHHhhhhHH
Q psy3701         156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS-KVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      .-..|++..|...+++.....|+...+-.....+....|+.+.+.. ....+. ..+...                    
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~--------------------  434 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKE--------------------  434 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccccc--------------------
Confidence            8889999999999999998889988888888888889999888874 222221 111110                    


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVN-RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG  298 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  298 (342)
                                ........+...+... .-.++.+.|...+.+++...|.+...+..+.......+
T Consensus       435 ----------~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  435 ----------NNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             ----------CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence                      0111123334444433 34578889999999999999999888877777666554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.58  E-value=0.0076  Score=50.90  Aligned_cols=98  Identities=11%  Similarity=-0.027  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhh-cCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQ-LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR  261 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (342)
                      .+.....+.+.|-+..|.++.+-.+.++|. ++                                   ..+...+-....
T Consensus       106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP-----------------------------------~g~ll~ID~~AL  150 (360)
T PF04910_consen  106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP-----------------------------------LGVLLFIDYYAL  150 (360)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-----------------------------------chhHHHHHHHHH
Confidence            445566677888888888888888888888 54                                   334444555556


Q ss_pred             HhhhHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHHHhCCh---------------HHHHHHHHHHHhccc
Q psy3701         262 KLKKYEEALEFHKQALVVAP-----MKASTFCCIGYIQALTGDL---------------DSAVNYFHKTMALKR  315 (342)
Q Consensus       262 ~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~al~~~p  315 (342)
                      +.++++--+..++.......     .-|..-+..+.++...++.               +.|...+++|+...|
T Consensus       151 rs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP  224 (360)
T PF04910_consen  151 RSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP  224 (360)
T ss_pred             hcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence            66777766666665544211     1335566777888888887               889999999988877

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.56  E-value=0.00016  Score=37.27  Aligned_cols=30  Identities=23%  Similarity=0.379  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         287 FCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       287 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                      ++.+|.++...|++++|+..|+++++..|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444455555555555555555555554443

>KOG1464|consensus

Probab=97.56  E-value=0.012  Score=46.24  Aligned_cols=200  Identities=13%  Similarity=0.088  Sum_probs=116.6

Q ss_pred             hCChHHHHHHHHHHhhcCCCcHH----HHHHhhhHHHhhccHHHHHHHHHHHhccCCC-----CchHHHHHHHHHh-hhC
Q psy3701          91 IGRSDPARRFLGKATSLDKLFLP----AWLMYGHSFAVENEHDQAMAAYFNAFNLFKG-----CHLPALYVGLECG-LTN  160 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~l~~~~~-~~~  160 (342)
                      ..+.++|+..|++.+++.+...+    ++-.+..+.+..|++++-+..|.+.+..-..     ...-..+-..-|. ...
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            34788999999999999887543    5666778888999999988888887754221     1111111111111 122


Q ss_pred             CHHHHHHHHHHHHhh--CCCChHHH----HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         161 NARLASKFFDLALSI--AHEDPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      +.+--...|+..+..  +..+...|    ..+|.+++..++|.+-.+.+++.-.......|+-..               
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~---------------  184 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQ---------------  184 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhh---------------
Confidence            333333333333221  22233444    368999999999988877777765544333211000               


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch--HH----HHHHHHHHHHhCChHHHHHHHH
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA--ST----FCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~----~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                               .......++|..-...|..+++..+-...|++++.+...-|  .+    .-.=|..+.+.|++++|-..|-
T Consensus       185 ---------kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFF  255 (440)
T KOG1464|consen  185 ---------KKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFF  255 (440)
T ss_pred             ---------hccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHH
Confidence                     01111134455555667777777777778888876653322  22    2223555677888888888887


Q ss_pred             HHHhcc
Q psy3701         309 KTMALK  314 (342)
Q Consensus       309 ~al~~~  314 (342)
                      .+..-.
T Consensus       256 EAFKNY  261 (440)
T KOG1464|consen  256 EAFKNY  261 (440)
T ss_pred             HHHhcc
Confidence            777653

>KOG3616|consensus

Probab=97.50  E-value=0.0082  Score=53.78  Aligned_cols=159  Identities=11%  Similarity=0.021  Sum_probs=92.9

Q ss_pred             HhHHHHhhccHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701          38 KGRVYEALENRALAADCYKGAL--------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK  103 (342)
Q Consensus        38 ~g~~~~~~~~~~~A~~~~~~~~--------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  103 (342)
                      -|.-+...|+++.|+..|-++.              |.+|+.+.+.+.... .....+-.++.-|...|+++.|.+.|.+
T Consensus       712 wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e  790 (1636)
T KOG3616|consen  712 WGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTE  790 (1636)
T ss_pred             HhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHh
Confidence            4556677788888888776654              456666666543322 2233455678888999999999999877


Q ss_pred             HhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-hHHHHHHHHHhh-------------hCCHHHHHHHH
Q psy3701         104 ATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-LPALYVGLECGL-------------TNNARLASKFF  169 (342)
Q Consensus       104 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~-------------~~~~~~A~~~~  169 (342)
                      +-.        ...-...|...|++.+|.+.-.+...  |... ..+...+.-+-.             .|.++.|++.|
T Consensus       791 ~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmy  860 (1636)
T KOG3616|consen  791 ADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMY  860 (1636)
T ss_pred             cch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHH
Confidence            522        22233456677888887777666543  2211 122222222333             34444555555


Q ss_pred             HHHHh----------hCCCC-hHHHHHHHHHHHHhcChhHHHHHHHHHH
Q psy3701         170 DLALS----------IAHED-PFVIHEMGVIAYQNHNYTVAENCFMEAL  207 (342)
Q Consensus       170 ~~~~~----------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al  207 (342)
                      .+.-.          ..|+. .+.+..+|.-+...|+.+.|...|-++-
T Consensus       861 dk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~  909 (1636)
T KOG3616|consen  861 DKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG  909 (1636)
T ss_pred             HhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence            43211          11221 2345667777777888888777776653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.49  E-value=0.00038  Score=35.85  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMK  283 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  283 (342)
                      +++.+|.++...|++++|+..|++.++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67899999999999999999999999999974

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.48  E-value=0.00029  Score=37.23  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      ++..+|.+|...|+|++|+.+|++++.+.++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            36788999999999999999999977665544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.48  E-value=0.043  Score=45.26  Aligned_cols=154  Identities=17%  Similarity=0.069  Sum_probs=113.6

Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----CChHHHHHHHHHHhhcCCCcHHHH
Q psy3701          40 RVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLI----GRSDPARRFLGKATSLDKLFLPAW  115 (342)
Q Consensus        40 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~  115 (342)
                      ......+++..|...+..+-            .  -.++.....++.+|...    .+..+|..+|+.+  ....++.+.
T Consensus        49 ~~~~~~~~~~~a~~~~~~a~------------~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~  112 (292)
T COG0790          49 AGSAYPPDYAKALKSYEKAA------------E--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEAL  112 (292)
T ss_pred             ccccccccHHHHHHHHHHhh------------h--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHH
Confidence            33445677777777777752            1  23447778888888754    3678899999954  445567888


Q ss_pred             HHhhhHHHh----hccHHHHHHHHHHHhccCCCC-chHHHHHHHHHhhhC-------CHHHHHHHHHHHHhhCCCChHHH
Q psy3701         116 LMYGHSFAV----ENEHDQAMAAYFNAFNLFKGC-HLPALYVGLECGLTN-------NARLASKFFDLALSIAHEDPFVI  183 (342)
Q Consensus       116 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~  183 (342)
                      +.+|.++..    ..+..+|..+|+++.+..-.. ..+...++..+..-.       +...|...|.++-...  ++.+.
T Consensus       113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~  190 (292)
T COG0790         113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQ  190 (292)
T ss_pred             HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHH
Confidence            899999887    458999999999999875443 234777777776642       3347888998887765  78888


Q ss_pred             HHHHHHHHH----hcChhHHHHHHHHHHHhhh
Q psy3701         184 HEMGVIAYQ----NHNYTVAENCFMEALSKVK  211 (342)
Q Consensus       184 ~~l~~~~~~----~~~~~~A~~~~~~al~~~~  211 (342)
                      ..+|.+|..    ..++++|..+|.++-+...
T Consensus       191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999988865    3478999999999988765

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.47  E-value=0.0013  Score=43.11  Aligned_cols=67  Identities=18%  Similarity=0.157  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc--hhHHhHHHHHHHHhhhcC
Q psy3701         269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD--SFATTMLSYVIEQLIEES  335 (342)
Q Consensus       269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~  335 (342)
                      .+..+++.++.+|++..+.+.++..+...|++++|++.+-.+++.+|++  ..+...+-.++..++...
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            3566788888999999999999999999999999999999999988766  577777877877776544

>KOG1550|consensus

Probab=97.45  E-value=0.039  Score=49.84  Aligned_cols=133  Identities=20%  Similarity=0.166  Sum_probs=88.2

Q ss_pred             CCCcHHHHHHHHHHHHHh-----CChHHHHHHHHHHhhc-----CCCcHHHHHHhhhHHHhhc-----cHHHHHHHHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLI-----GRSDPARRFLGKATSL-----DKLFLPAWLMYGHSFAVEN-----EHDQAMAAYFNA  138 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a  138 (342)
                      +-.+..+...+|.++..-     .|.+.|+.+|+.+...     ....+.+.+.+|.+|....     +...|+.+|.++
T Consensus       240 ~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a  319 (552)
T KOG1550|consen  240 KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA  319 (552)
T ss_pred             hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence            445677788888888765     5788888888888661     1114456677777777643     566777777777


Q ss_pred             hccCCCCchHHHHHHHHHhhhC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh----cChhHHHHHHHHHHHhh
Q psy3701         139 FNLFKGCHLPALYVGLECGLTN---NARLASKFFDLALSIAHEDPFVIHEMGVIAYQN----HNYTVAENCFMEALSKV  210 (342)
Q Consensus       139 l~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~  210 (342)
                      -...  ++.+.+.+|.++..-.   +...|.++|..+...  .+..+.+.++.++..-    .+...|..++.++.+..
T Consensus       320 A~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  320 AELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            6654  3456667777766544   456777777777653  3566677777776542    35667777777777665

>PRK10941 hypothetical protein; Provisional

Probab=97.44  E-value=0.0023  Score=51.29  Aligned_cols=77  Identities=18%  Similarity=0.100  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      .....++-.++.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++.-++..|+++.+...-.+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            45777888899999999999999999999999999999999999999999999999999999999999977654433

>KOG0890|consensus

Probab=97.37  E-value=0.22  Score=50.95  Aligned_cols=274  Identities=9%  Similarity=-0.061  Sum_probs=151.5

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHH----H---HHHHH-----HHHHHHhcCCCcHHHHH----------HHHHHHHHhCCh
Q psy3701          37 LKGRVYEALENRALAADCYKGAL----L---ADLFK-----LAHELVDLYPDSAIAWY----------AVGCYYYLIGRS   94 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~----~---~~a~~-----~~~~~~~~~p~~~~~~~----------~l~~~~~~~~~~   94 (342)
                      .++++-...+.|.+|+-++++-.    .   .++.-     +|..+  .+|+....-.          ..-..+...|++
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i--~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSI--HDPDGVEGVSARRFADPSLYQQILEHEASGNW 1465 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhc--CCcchhhhHHHHhhcCccHHHHHHHHHhhccH
Confidence            46667777788888887777721    1   11111     11111  2444333222          223344567889


Q ss_pred             HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH-HHhhhCCHHHHHHHHH---
Q psy3701          95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL-ECGLTNNARLASKFFD---  170 (342)
Q Consensus        95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~---  170 (342)
                      ..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-+..++. +-.+.++++.-.....   
T Consensus      1466 ~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n 1545 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRN 1545 (2382)
T ss_pred             HHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhccc
Confidence            999999999999998877777777777777788877777665555544443433433322 2345555555444422   


Q ss_pred             ----------HH-HhhCCCChHHH-HHHHHHHH----------HhcChhHHHHHHHHHHH-------------hhhhcCc
Q psy3701         171 ----------LA-LSIAHEDPFVI-HEMGVIAY----------QNHNYTVAENCFMEALS-------------KVKQLGG  215 (342)
Q Consensus       171 ----------~~-~~~~~~~~~~~-~~l~~~~~----------~~~~~~~A~~~~~~al~-------------~~~~~~~  215 (342)
                                +. +.....+.-.. ..+...-.          ..|-|..+.++.-+.-.             ..++...
T Consensus      1546 ~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s 1625 (2382)
T KOG0890|consen 1546 IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDS 1625 (2382)
T ss_pred             ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc
Confidence                      00 11111111100 00000000          00122222222222111             1111112


Q ss_pred             cccccchhhHHHHhhhhHH--HHHHHhch--------hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701         216 EIIADKWEPLLNNLGHKAE--DKVKQLGG--------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS  285 (342)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  285 (342)
                      ......|...+...+....  +.+-.+++        ........+.|...|.+....|+++.|..++-+|.+..  -+.
T Consensus      1626 ~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~ 1703 (2382)
T KOG0890|consen 1626 ANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPE 1703 (2382)
T ss_pred             cccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cch
Confidence            2223344443333332221  11111111        12355678899999999999999999999999998766  567


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         286 TFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      +....|..++.+|+...|+..+++.++.+
T Consensus      1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            88899999999999999999999999653

>KOG3364|consensus

Probab=97.36  E-value=0.0073  Score=41.96  Aligned_cols=84  Identities=8%  Similarity=0.126  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHh---hhHHHHHHHHHHHHh-hCCC-chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701         250 EPLLNNLGHVNRKL---KKYEEALEFHKQALV-VAPM-KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML  324 (342)
Q Consensus       250 ~~~~~~l~~~~~~~---g~~~~A~~~~~~al~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  324 (342)
                      ....+++++++.+.   .+..+.+..++..++ -.|. ..+..+.++..+.+.|+|+.++.+....++..|++..+...-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            56888999998765   456788999999996 4443 346788899999999999999999999999999999988776


Q ss_pred             HHHHHHhhh
Q psy3701         325 SYVIEQLIE  333 (342)
Q Consensus       325 ~~~~~~~~~  333 (342)
                      ..+.....+
T Consensus       112 ~~ied~itk  120 (149)
T KOG3364|consen  112 ETIEDKITK  120 (149)
T ss_pred             HHHHHHHhh
Confidence            666655543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.34  E-value=0.004  Score=45.06  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ..+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+.+..|..+.+..+++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34444455555556666666666665556666666666666666666666666666666666666666666666666644


Q ss_pred             h
Q psy3701         331 L  331 (342)
Q Consensus       331 ~  331 (342)
                      .
T Consensus        91 ~   91 (160)
T PF09613_consen   91 L   91 (160)
T ss_pred             c
Confidence            3

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.33  E-value=0.13  Score=47.47  Aligned_cols=117  Identities=9%  Similarity=-0.016  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC--c-------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc--
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL--F-------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH--  146 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--  146 (342)
                      |..-...+.......++.+|..+..++-..-|.  .       ....-..|.+....|++++|++..+.++..-|.+.  
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            344445566666677777777776665543222  1       12334456666677777777777777777666532  


Q ss_pred             ---hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhc
Q psy3701         147 ---LPALYVGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNH  194 (342)
Q Consensus       147 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~  194 (342)
                         .+...+|.+..-.|++++|..+..++.+.....      ..+....+.++..+|
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence               234446666667777777777777666553211      122334455666666

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.33  E-value=0.0031  Score=42.31  Aligned_cols=44  Identities=16%  Similarity=0.097  Sum_probs=22.3

Q ss_pred             HHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701         131 AMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       131 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      +++++.++..+.|..+..++.+|.-+....-|+++..-.++++.
T Consensus        63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            44455555555555544555555544444455555555555544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.31  E-value=0.083  Score=44.86  Aligned_cols=46  Identities=15%  Similarity=0.260  Sum_probs=32.4

Q ss_pred             HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHH
Q psy3701          71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWL  116 (342)
Q Consensus        71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  116 (342)
                      ++.+|++...|+.+...+-.+|.+++-.+.+++...-.|-.+.+|.
T Consensus        35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~   80 (660)
T COG5107          35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWR   80 (660)
T ss_pred             hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHH
Confidence            5677777777777777777777777777777777666665554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.29  E-value=0.0048  Score=44.64  Aligned_cols=77  Identities=13%  Similarity=-0.063  Sum_probs=36.4

Q ss_pred             hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC
Q psy3701         119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN  195 (342)
Q Consensus       119 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (342)
                      ..+-...++.+++...+...--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..+|+
T Consensus        17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            33333444444444444444444444444444444444444455555544444444444444444444444444444

>KOG2300|consensus

Probab=97.27  E-value=0.097  Score=44.84  Aligned_cols=168  Identities=14%  Similarity=0.016  Sum_probs=117.5

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-------SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        38 ~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      +.-+-.-.|++.+|+.......     .    .....|.       .+.....+|.....-+.++.|...|..+.+.-..
T Consensus       329 iv~c~lv~~~~~~al~~i~dm~-----~----w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~  399 (629)
T KOG2300|consen  329 IVMCRLVRGDYVEALEEIVDMK-----N----WCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES  399 (629)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHH-----H----HHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH
Confidence            4455556788888877666542     1    2233444       4667888899999999999999999999876433


Q ss_pred             -c--HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--
Q psy3701         111 -F--LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------HLPALYVGLECGLTNNARLASKFFDLALSIAHE--  178 (342)
Q Consensus       111 -~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--  178 (342)
                       +  .....++|.+|.+.|+-+.-.+..+..-..+...       ..+++..|...+.++++.||...+.+.++...-  
T Consensus       400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed  479 (629)
T KOG2300|consen  400 IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED  479 (629)
T ss_pred             HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence             2  2345678999999887665554444333222111       134455677788899999999999999987521  


Q ss_pred             ----ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         179 ----DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       179 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                          ..-.+..+|.+....|+..++.+..+-+++...+.+
T Consensus       480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~  519 (629)
T KOG2300|consen  480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP  519 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence                122456788999999999999999999988776653

>KOG2041|consensus

Probab=97.26  E-value=0.033  Score=49.72  Aligned_cols=206  Identities=12%  Similarity=-0.006  Sum_probs=121.0

Q ss_pred             HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC-----cH---HHHHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701          71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL-----FL---PAWLMYGHSFAVENEHDQAMAAYFNAFNLF  142 (342)
Q Consensus        71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~  142 (342)
                      ++.+| ++..|..++......-.++-|...|-+.-....-     -.   .--...+.+-.--|++++|.+.|-.+-+.+
T Consensus       686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD  764 (1189)
T KOG2041|consen  686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD  764 (1189)
T ss_pred             HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence            34466 5899999999999888888888888765322110     00   001234555556789999999886543221


Q ss_pred             CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         143 KGCHLPALYVGLECGLTNNARLASKFFDLALSIAH--EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                              .....+.+.|++-...+.++..-.-..  .-..++.++|..+..+..|++|.++|.+.-.....-       
T Consensus       765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~-------  829 (1189)
T KOG2041|consen  765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQI-------  829 (1189)
T ss_pred             --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHH-------
Confidence                    112345667777777666654322111  124678999999999999999999998754322111       


Q ss_pred             chhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701         221 KWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD  299 (342)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  299 (342)
                         ..+..+..+ .    .+.. ...-|.....+-.+|..+...|.-++|.+.|-+.-  .|.-      --.....+++
T Consensus       830 ---ecly~le~f-~----~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQ  893 (1189)
T KOG2041|consen  830 ---ECLYRLELF-G----ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQ  893 (1189)
T ss_pred             ---HHHHHHHhh-h----hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHH
Confidence               111111110 0    0111 11234444577778888888888888888776531  1211      1223455667


Q ss_pred             hHHHHHHHH
Q psy3701         300 LDSAVNYFH  308 (342)
Q Consensus       300 ~~~A~~~~~  308 (342)
                      |.+|.+.-+
T Consensus       894 W~~avelaq  902 (1189)
T KOG2041|consen  894 WGEAVELAQ  902 (1189)
T ss_pred             HHHHHHHHH
Confidence            777766554

>KOG3824|consensus

Probab=97.21  E-value=0.0018  Score=51.63  Aligned_cols=73  Identities=19%  Similarity=0.254  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      .+.+.-..+.|+.++|...|+-++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.++..+-.+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            3445556778999999999999999999999999999999999999999999999999999999988776543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.20  E-value=0.079  Score=43.32  Aligned_cols=135  Identities=14%  Similarity=0.073  Sum_probs=80.1

Q ss_pred             hhCCHHHHHHHHHHHHhhC-CCC-------hHHHHHHHHHHHHhc-ChhHHHHHHHHHHHhhhh-cCccccccchhhHHH
Q psy3701         158 LTNNARLASKFFDLALSIA-HED-------PFVIHEMGVIAYQNH-NYTVAENCFMEALSKVKQ-LGGEIIADKWEPLLN  227 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~  227 (342)
                      ..|+.+.|..++.++-... ..+       ...+++.|......+ ++++|+.+++++.++-.. ..........     
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~-----   79 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG-----   79 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH-----
Confidence            4455566666655554433 222       235677788888888 999999999999988433 1000000000     


Q ss_pred             HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHH
Q psy3701         228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE---EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV  304 (342)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  304 (342)
                                        ......++..++.++...+.++   +|....+.+-...|+.+..+...-.+..+.++.+.+.
T Consensus        80 ------------------~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~  141 (278)
T PF08631_consen   80 ------------------SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE  141 (278)
T ss_pred             ------------------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH
Confidence                              0001346666777777665543   4555555555566776766655555555577778888


Q ss_pred             HHHHHHHhccc
Q psy3701         305 NYFHKTMALKR  315 (342)
Q Consensus       305 ~~~~~al~~~p  315 (342)
                      +.+.+++...+
T Consensus       142 ~~L~~mi~~~~  152 (278)
T PF08631_consen  142 EILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHhcc
Confidence            88777776543

It is also involved in sporulation [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.18  E-value=0.19  Score=46.41  Aligned_cols=237  Identities=14%  Similarity=0.013  Sum_probs=149.7

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-------SAIAWYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      .....+.......++.+|..+..+..         ..+ ..|.       .++..-..|.+....|++++|.+..+.++.
T Consensus       417 Lvll~aW~~~s~~r~~ea~~li~~l~---------~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~  486 (894)
T COG2909         417 LVLLQAWLLASQHRLAEAETLIARLE---------HFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV  486 (894)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHH---------HHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34456777778888888888877752         011 1111       134445568888999999999999999998


Q ss_pred             cCCCc-----HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc----h--HHHHHHHHHhhhCC--HHHHHHHHHHH-
Q psy3701         107 LDKLF-----LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH----L--PALYVGLECGLTNN--ARLASKFFDLA-  172 (342)
Q Consensus       107 ~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~--~~~~l~~~~~~~~~--~~~A~~~~~~~-  172 (342)
                      .-|.+     ..+...+|.+..-.|++++|..+.+.+.+......    .  +....+.++..+|+  +.+....+... 
T Consensus       487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~  566 (894)
T COG2909         487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIR  566 (894)
T ss_pred             hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            87764     34577889999999999999999999888744322    2  22234667778883  33333333322 


Q ss_pred             ---HhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCC
Q psy3701         173 ---LSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW  249 (342)
Q Consensus       173 ---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
                         +...|.+.......+.++...-+++.+..-....++......                              ..+..
T Consensus       567 ~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~------------------------------~~~~~  616 (894)
T COG2909         567 EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT------------------------------PQPLL  616 (894)
T ss_pred             HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc------------------------------cchhH
Confidence               222344444444455555544446666666666665543331                              11111


Q ss_pred             -hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-hH------HHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         250 -EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-AS------TFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       250 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                       ....+.++.+....|++++|...+.+......+. +.      ++.........+|+...|..+..+.
T Consensus       617 ~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         617 SRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence             1233588999999999999999999887654322 11      1111222234678988888888773

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.15  E-value=0.018  Score=38.79  Aligned_cols=30  Identities=27%  Similarity=0.263  Sum_probs=17.1

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVV  279 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  279 (342)
                      +..++.+|.-+.....|+++..-.++++.+
T Consensus        78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            455566665555555566666665555543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.15  E-value=0.0048  Score=35.58  Aligned_cols=43  Identities=23%  Similarity=0.224  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI  293 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  293 (342)
                      +.++.+|..+.++|+|++|..+.+.++++.|++..+......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            3567899999999999999999999999999998776554443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.11  E-value=0.011  Score=38.67  Aligned_cols=60  Identities=20%  Similarity=0.101  Sum_probs=34.4

Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc--HHHHHHhhhHHHhhccHH
Q psy3701          70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF--LPAWLMYGHSFAVENEHD  129 (342)
Q Consensus        70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~  129 (342)
                      .+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..+...+-.++...|.-+
T Consensus        14 ~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen   14 ALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            356677777777777777777777777777777777666554  344444444555555433

>KOG3824|consensus

Probab=97.09  E-value=0.0025  Score=50.79  Aligned_cols=60  Identities=13%  Similarity=0.066  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701          61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGH  120 (342)
Q Consensus        61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~  120 (342)
                      ++|..+++.++...|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.++
T Consensus       133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            333333333457777777777777777777777777777777777777777777666554

>smart00028 TPR Tetratricopeptide repeats

Probab=97.07  E-value=0.0013  Score=33.34  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         286 TFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                      ++..+|.++..+|++++|..+++++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344455555555555555555555555544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.02  E-value=0.017  Score=49.13  Aligned_cols=126  Identities=13%  Similarity=-0.109  Sum_probs=103.2

Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF  168 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  168 (342)
                      +..|+.-.|-+-...++...|.+|......+.+....|+|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            45677888888888888889999988888999999999999999988776665555555666666778888999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      -.-.+...-+++++...-+.....+|-++++...+++.+.++|...
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            8888887777787776666677788889999999999999988764

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.00  E-value=0.28  Score=45.13  Aligned_cols=256  Identities=16%  Similarity=0.141  Sum_probs=148.6

Q ss_pred             hhhhhhhhhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCC----------------cHH
Q psy3701          19 FFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELV-D--LYPD----------------SAI   79 (342)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~-~--~~p~----------------~~~   79 (342)
                      .+.|++  ..+...-+++.-|-.....+..++|.+++.+++     ...++.. .  ..|.                ...
T Consensus       290 ~f~wl~--~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l-----~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~  362 (608)
T PF10345_consen  290 VFSWLP--KEELYALVYFLSGLHNLYKGSMDKSEKFLEKAL-----KQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY  362 (608)
T ss_pred             EEeecC--HHHHHHHHHHHHHHHHhhccCchHHHHHHHHHH-----HHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Confidence            444544  345566677778888888888889999988875     3333333 1  1111                122


Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcC---CC------cHHHHHHhhhHHHhhccHHHHHHHHH--------HHhccC
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLD---KL------FLPAWLMYGHSFAVENEHDQAMAAYF--------NAFNLF  142 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~  142 (342)
                      ..+..+.+.+-.+++..|....+.+....   |.      .+..++..|..+...|+.+.|...|.        .+....
T Consensus       363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~  442 (608)
T PF10345_consen  363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKS  442 (608)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCC
Confidence            44566778888999999999888776542   22      36678899999999999999999998        333444


Q ss_pred             CCCc---hHHHHHHHHHhhhCCHHH----HHHHHHHHHhhCCCChHHHHHHHHHHH-------HhcChhHHHHHHHHHHH
Q psy3701         143 KGCH---LPALYVGLECGLTNNARL----ASKFFDLALSIAHEDPFVIHEMGVIAY-------QNHNYTVAENCFMEALS  208 (342)
Q Consensus       143 ~~~~---~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~A~~~~~~al~  208 (342)
                      +.+.   .+..++..++...+.-..    ..+.+++.-....+.+...+..+....       ..-...++...+.++++
T Consensus       443 ~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~  522 (608)
T PF10345_consen  443 KFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALK  522 (608)
T ss_pred             cchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHH
Confidence            4322   223345555555544333    344444332222122222222222211       12233467777777776


Q ss_pred             hh-hhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc---h
Q psy3701         209 KV-KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK---A  284 (342)
Q Consensus       209 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~  284 (342)
                      .. ....                              ......-++..++..+. .|+..+.......+.......   .
T Consensus       523 ~~~~~~~------------------------------n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~  571 (608)
T PF10345_consen  523 MANNKLG------------------------------NSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYS  571 (608)
T ss_pred             HHHHhhc------------------------------cchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            65 2111                              11112335555666666 677777666666666544332   3


Q ss_pred             -HHHH-----HHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         285 -STFC-----CIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       285 -~~~~-----~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                       ..|.     .+...+...|+.++|.....+.-.
T Consensus       572 ~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  572 DQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             hHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence             3332     355567788999999988777644

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2396|consensus

Probab=96.96  E-value=0.018  Score=49.27  Aligned_cols=93  Identities=6%  Similarity=-0.002  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc-HHHHHHHHHHH
Q psy3701          60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE-HDQAMAAYFNA  138 (342)
Q Consensus        60 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a  138 (342)
                      ......+|+.+....+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            45667777777777777888888777777777777888888888888888888888777765555554 77788888888


Q ss_pred             hccCCCCchHHHHH
Q psy3701         139 FNLFKGCHLPALYV  152 (342)
Q Consensus       139 l~~~~~~~~~~~~l  152 (342)
                      ++.+|+++..|...
T Consensus       167 LR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEY  180 (568)
T ss_pred             hhcCCCChHHHHHH
Confidence            88888877766543

>KOG3783|consensus

Probab=96.93  E-value=0.24  Score=43.18  Aligned_cols=238  Identities=12%  Similarity=-0.027  Sum_probs=134.2

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH----HHHHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701          66 LAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL----PAWLMYGHSFAVENEHDQAMAAYFNAFNL  141 (342)
Q Consensus        66 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~  141 (342)
                      .........|+++.-....+..+...|+.+.|+..++..+.  +..-    -.++.+|.++..+.+|.+|-..+......
T Consensus       255 ~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de  332 (546)
T KOG3783|consen  255 ALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE  332 (546)
T ss_pred             HhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence            33344566788888788888888888888888888888777  3322    23566788888888888888888888777


Q ss_pred             CCCCchHHHHHH-HHHhh--------hCCHHHHHHHHHHHH---hhCCCChHH---HHHHHHHHHHhcChhHHHHHHHHH
Q psy3701         142 FKGCHLPALYVG-LECGL--------TNNARLASKFFDLAL---SIAHEDPFV---IHEMGVIAYQNHNYTVAENCFMEA  206 (342)
Q Consensus       142 ~~~~~~~~~~l~-~~~~~--------~~~~~~A~~~~~~~~---~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a  206 (342)
                      ..-+...+.+++ -++..        .|+-++|..+++...   ...|.+..+   ....+.-+...+.           
T Consensus       333 sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-----------  401 (546)
T KOG3783|consen  333 SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-----------  401 (546)
T ss_pred             hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-----------
Confidence            665554555544 33322        234444444333322   222222111   0111111111110           


Q ss_pred             HHhhhhcCccccccchhhHHHHhhhhHHHHHH----Hhch--hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701         207 LSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK----QLGG--EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA  280 (342)
Q Consensus       207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  280 (342)
                        .++...-..+..-....++...+.......    ....  ....++..--+..+|.++..+|+...|..+|..+++..
T Consensus       402 --~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e  479 (546)
T KOG3783|consen  402 --LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE  479 (546)
T ss_pred             --ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence              000000000000011111111111111111    1111  11233334456678999999999999999999888431


Q ss_pred             ---CC----chHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcccCch
Q psy3701         281 ---PM----KASTFCCIGYIQALTGD-LDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       281 ---~~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~  318 (342)
                         ..    .|.+++.+|..+..+|. ..++..++.+|-+...++.
T Consensus       480 ~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~  525 (546)
T KOG3783|consen  480 SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE  525 (546)
T ss_pred             HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence               11    25789999999999999 9999999999998875544

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.92  E-value=0.061  Score=36.58  Aligned_cols=96  Identities=17%  Similarity=0.114  Sum_probs=58.4

Q ss_pred             hCCHHHHHHHHHHHHhhCCC------------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH
Q psy3701         159 TNNARLASKFFDLALSIAHE------------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL  226 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  226 (342)
                      .|-+++|...++++......            +..++-.++..+..+|+|++++...++++....... ++        .
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG-EL--------~   92 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG-EL--------H   92 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---T--------T
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc-cc--------c
Confidence            34555555555555543321            234566788888899999998888888877543331 00        0


Q ss_pred             HHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701         227 NNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV  279 (342)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  279 (342)
                      ..                ....|..+.++.+..+...|+.++|+..|+.+-++
T Consensus        93 qd----------------eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   93 QD----------------EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             ST----------------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cc----------------cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            00                00012456677888889999999999999888654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2041|consensus

Probab=96.91  E-value=0.14  Score=45.95  Aligned_cols=162  Identities=13%  Similarity=-0.051  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          28 SEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        28 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      +.+....|..+++.....-.++.|...|-+.-.-..+++..++-......    ...+.+-.--|++++|.+.|-.+-+.
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~----~q~aei~~~~g~feeaek~yld~drr  763 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKE----QQRAEISAFYGEFEEAEKLYLDADRR  763 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHH----HHhHhHhhhhcchhHhhhhhhccchh
Confidence            34556778888888887777888877776642211122222221111111    11222333335555555555332111


Q ss_pred             -------------------------CC---CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701         108 -------------------------DK---LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT  159 (342)
Q Consensus       108 -------------------------~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  159 (342)
                                               +.   ....++..+|..+..+..+++|.++|.+.-..        -....+++..
T Consensus       764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~l  835 (1189)
T KOG2041|consen  764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRL  835 (1189)
T ss_pred             hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHH
Confidence                                     01   11346667777777777777777776654221        1234455555


Q ss_pred             CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701         160 NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME  205 (342)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  205 (342)
                      .++++-.    .....-|++...+-.+|..+...|--++|++.|-+
T Consensus       836 e~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  836 ELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            5555433    22334577777788888888888888888877754

>smart00028 TPR Tetratricopeptide repeats

Probab=96.91  E-value=0.0026  Score=32.13  Aligned_cols=32  Identities=44%  Similarity=0.633  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPM  282 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  282 (342)
                      .++..+|.++...|++++|+..++++++..|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46789999999999999999999999998875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10941 hypothetical protein; Provisional

Probab=96.90  E-value=0.011  Score=47.51  Aligned_cols=75  Identities=13%  Similarity=-0.002  Sum_probs=54.2

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy3701         115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI  189 (342)
Q Consensus       115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  189 (342)
                      ..++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.....+
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            445566777777777777777777777777777777777777777777777777777777777777665444333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.89  E-value=0.0018  Score=49.34  Aligned_cols=62  Identities=24%  Similarity=0.308  Sum_probs=57.1

Q ss_pred             HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhH
Q psy3701         259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA  320 (342)
Q Consensus       259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  320 (342)
                      ...+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|++...
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence            45567899999999999999999999999999999999999999999999999999987643

>KOG2396|consensus

Probab=96.88  E-value=0.021  Score=48.84  Aligned_cols=61  Identities=13%  Similarity=0.224  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC-hHHHHHHHHHHhhcCCCcHHHHHHhhh
Q psy3701          60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR-SDPARRFLGKATSLDKLFLPAWLMYGH  120 (342)
Q Consensus        60 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~  120 (342)
                      ..+.-.++.+++..+|++++.|..-|...+..+. .+.|...|.++++.+|+++..|...-+
T Consensus       121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence            4567788889999999999999999988888876 888999999999999999988765443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.83  E-value=0.027  Score=43.70  Aligned_cols=69  Identities=26%  Similarity=0.370  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHhhhHH-------HHHHHHHHHHhhCCC------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         250 EPLLNNLGHVNRKLKKYE-------EALEFHKQALVVAPM------KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~-------~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                      +.++..+|++|...|+.+       .|...|+++++....      ...+.+.+|.+..+.|++++|..+|.+++.....
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            578888999999888854       566666666654322      2467888999999999999999999999986443


Q ss_pred             ch
Q psy3701         317 DS  318 (342)
Q Consensus       317 ~~  318 (342)
                      +.
T Consensus       198 s~  199 (214)
T PF09986_consen  198 SK  199 (214)
T ss_pred             CC
Confidence            33

>KOG0890|consensus

Probab=96.83  E-value=0.72  Score=47.60  Aligned_cols=117  Identities=15%  Similarity=0.113  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      ...|...|++....|+++.|..++-+|.+..                                      .+.+....|..
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------------------------------------~~~i~~E~AK~ 1711 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--------------------------------------LPEIVLERAKL 1711 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------------------------------------cchHHHHHHHH
Confidence            4456666666666666666666665555443                                      14688999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhC-CC----------c------hHHHHHHHHHHHHhCCh--HHHHHHHHHHHhcccCchhH
Q psy3701         260 NRKLKKYEEALEFHKQALVVA-PM----------K------ASTFCCIGYIQALTGDL--DSAVNYFHKTMALKRDDSFA  320 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~-~~----------~------~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~  320 (342)
                      +...|+-..|+..+++.++.+ |+          .      ..+...++......|++  .+-+++|+.+.++.|.....
T Consensus      1712 lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~ 1791 (2382)
T KOG0890|consen 1712 LWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDK 1791 (2382)
T ss_pred             HHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCc
Confidence            999999999999999999754 22          1      12334444555556664  45678999999999998888


Q ss_pred             HhHHHHHHHHhhhc
Q psy3701         321 TTMLSYVIEQLIEE  334 (342)
Q Consensus       321 ~~~l~~~~~~~~~~  334 (342)
                      ++.++.-+.++.++
T Consensus      1792 hy~l~~yy~kll~~ 1805 (2382)
T KOG0890|consen 1792 HYHLGKYYDKLLED 1805 (2382)
T ss_pred             eeeHHHHHHHHhhh
Confidence            88888776666544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.82  E-value=0.021  Score=40.67  Aligned_cols=73  Identities=14%  Similarity=-0.011  Sum_probs=40.6

Q ss_pred             hhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701         124 VENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY  196 (342)
Q Consensus       124 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (342)
                      ..++++++...+...--+.|+.+..-..-|.++...|++.+|+..++......+..+...-.++.|+..+|+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            3555555555555555555555555555555555555566655555555555555455555555555555543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4814|consensus

Probab=96.81  E-value=0.024  Score=50.02  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      +.+-|.-+++..+|..+++.|...+..-|.+.                              .+...+....+++.||..
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~------------------------------~~~~FaK~qR~l~~CYL~  406 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN------------------------------YSDRFAKIQRALQVCYLK  406 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchh------------------------------hhhHHHHHHHHHHHHHhh
Confidence            34556677888999999999999998888774                              223335678889999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      +.+.+.|.+++++|-+.+|.++-....+-.+....|.-++|+.+........
T Consensus       407 L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  407 LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            9999999999999999999999888888888999999999999988776543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.78  E-value=0.086  Score=35.90  Aligned_cols=101  Identities=16%  Similarity=0.101  Sum_probs=68.2

Q ss_pred             HHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701         189 IAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE  268 (342)
Q Consensus       189 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  268 (342)
                      -....|-|++|...++++++.....|.+-...                        .....+-.+..|+.++..+|+|++
T Consensus        18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFD------------------------h~GFDA~chA~Ls~A~~~Lgry~e   73 (144)
T PF12968_consen   18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFD------------------------HDGFDAFCHAGLSGALAGLGRYDE   73 (144)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---------------------------HHHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccCChHhhcc------------------------cccHHHHHHHHHHHHHHhhccHHH
Confidence            34556889999999999999887664110000                        000013466778889999999998


Q ss_pred             HHHHHHHHHh-------hCCCchH----HHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         269 ALEFHKQALV-------VAPMKAS----TFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       269 A~~~~~~al~-------~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      ++..-++++.       ++.+...    +.++.+..+..+|+.++|+..|+.+-+.
T Consensus        74 ~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   74 CLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            8877777764       4455444    3467888899999999999999988664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.15  Score=44.77  Aligned_cols=83  Identities=13%  Similarity=-0.043  Sum_probs=41.5

Q ss_pred             HHHHHHHHhccCCCCchHHHH--HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHH-HH
Q psy3701         131 AMAAYFNAFNLFKGCHLPALY--VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME-AL  207 (342)
Q Consensus       131 A~~~~~~al~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al  207 (342)
                      ++..+...+.++|.++.....  +...+...+....+.-.....+..+|.+..+..+++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444454455555554444322  244444455555555555556666666666666655555554444444333333 44


Q ss_pred             Hhhhhc
Q psy3701         208 SKVKQL  213 (342)
Q Consensus       208 ~~~~~~  213 (342)
                      ...|.+
T Consensus       130 ~~~~~~  135 (620)
T COG3914         130 WLSPDN  135 (620)
T ss_pred             hcCcch
Confidence            444444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.73  E-value=0.022  Score=40.53  Aligned_cols=80  Identities=11%  Similarity=0.106  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      +..+...-...++.+++...+...--+.|+.+.....-|.++...|+|.+|+..++...+-.|..+....+++.|+...+
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33344444456677777777766666677777777777777777777777777777777766666766777777766544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.72  E-value=0.48  Score=43.65  Aligned_cols=273  Identities=15%  Similarity=0.041  Sum_probs=145.5

Q ss_pred             hhhhHHHHHHHHHHhHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHH
Q psy3701          25 QLQSEMKSALLLLKGRVYE-ALENRALAADCYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARR   99 (342)
Q Consensus        25 ~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~   99 (342)
                      ++++..++.+.+.+|.++. ...+++.|..++.++.          .+...++-    ..+-+.++.++.+.+... |..
T Consensus        52 ~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~----------~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~  120 (608)
T PF10345_consen   52 KLSPRQEARVRLRLASILLEETENLDLAETYLEKAI----------LLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALK  120 (608)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HhccccchHHHHHHHHHHHHHHHHhcCHHH-HHH
Confidence            5567788889999999887 7899999999999985          22222322    223445566766666655 777


Q ss_pred             HHHHHhhcCCC---cHHH-HHHh--hhHHHhhccHHHHHHHHHHHhccCC--CCchHHH----HHHHHHhhhCCHHHHHH
Q psy3701         100 FLGKATSLDKL---FLPA-WLMY--GHSFAVENEHDQAMAAYFNAFNLFK--GCHLPAL----YVGLECGLTNNARLASK  167 (342)
Q Consensus       100 ~~~~a~~~~~~---~~~~-~~~l--a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~----~l~~~~~~~~~~~~A~~  167 (342)
                      .+++.++....   .... .+.+  .......+++..|++.++.......  +++.+..    ..+.+....+..+++++
T Consensus       121 ~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~  200 (608)
T PF10345_consen  121 NLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLE  200 (608)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence            77777765433   1111 1111  2222223677777777777776652  3332222    23445555666666666


Q ss_pred             HHHHHHhhCC------C----ChHHHHHHHH--HHHHhcChhHHHHHHHH---HHHhhhhcC--------ccc-------
Q psy3701         168 FFDLALSIAH------E----DPFVIHEMGV--IAYQNHNYTVAENCFME---ALSKVKQLG--------GEI-------  217 (342)
Q Consensus       168 ~~~~~~~~~~------~----~~~~~~~l~~--~~~~~~~~~~A~~~~~~---al~~~~~~~--------~~~-------  217 (342)
                      .++++.....      +    ...+|..+-.  +....|+++.+...+++   .++...+.+        +.+       
T Consensus       201 ~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~  280 (608)
T PF10345_consen  201 LLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEG  280 (608)
T ss_pred             HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccc
Confidence            6666533211      1    1223333332  23344554444433322   222211110        000       


Q ss_pred             -------------------cccchh-hHHH--------HhhhhHHHHHHHhchhc----cCCC----------------C
Q psy3701         218 -------------------IADKWE-PLLN--------NLGHKAEDKVKQLGGEI----IADK----------------W  249 (342)
Q Consensus       218 -------------------~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~----~~~~----------------~  249 (342)
                                         ....+. ....        ....+.++.+...+...    ..+.                .
T Consensus       281 ~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~  360 (608)
T PF10345_consen  281 SSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQ  360 (608)
T ss_pred             cccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHH
Confidence                               000001 0000        01111222222222211    0000                1


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC---CC------chHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA---PM------KASTFCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                      .......+.+..-.+++..|....+.+....   |.      .+..++..|..+...|+.+.|...|.
T Consensus       361 ~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  361 CYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            2244456667778899999998888777543   22      36678889999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.56  E-value=0.097  Score=39.41  Aligned_cols=65  Identities=14%  Similarity=0.002  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLF  142 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  142 (342)
                      ..++..+|..|.+.|+.++|++.|.++.+.....   .+.+..+..+....+++........++-...
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4677888888999999999999888877654332   4566777777788888888888777776553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1839|consensus

Probab=96.54  E-value=0.077  Score=50.97  Aligned_cols=173  Identities=15%  Similarity=0.032  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHhCChHHHHH------HHH-HHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--------C
Q psy3701          79 IAWYAVGCYYYLIGRSDPARR------FLG-KATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--------K  143 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~------~~~-~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~  143 (342)
                      .-....|......|.+.+|.+      .+. ..-.+.|.....+..++.++...|+.++|+..-.++.-+.        |
T Consensus       933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen  933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred             hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence            344556666677777777777      554 3334578888899999999999999999999988876553        3


Q ss_pred             CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCc
Q psy3701         144 GCHLPALYVGLECGLTNNARLASKFFDLALSI--------AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG  215 (342)
Q Consensus       144 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  215 (342)
                      +....+..++......++...|...+.++..+        .|.-.....+++.++...++++.|+.+.+.|...+.... 
T Consensus      1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~- 1091 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL- 1091 (1236)
T ss_pred             HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc-
Confidence            44566777888888888999999998888764        344455667888899999999999999999998655442 


Q ss_pred             cccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701         216 EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV  279 (342)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  279 (342)
                                                 ....-.....+..++..+..++++..|+...+....+
T Consensus      1092 ---------------------------g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1092 ---------------------------GPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             ---------------------------CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence                                       0011223456677788888888888887777666543

>KOG3364|consensus

Probab=96.51  E-value=0.12  Score=36.16  Aligned_cols=77  Identities=12%  Similarity=0.092  Sum_probs=55.8

Q ss_pred             ChHHHHHHHHHHHHhc---ChhHHHHHHHHHHH-hhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701         179 DPFVIHEMGVIAYQNH---NYTVAENCFMEALS-KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN  254 (342)
Q Consensus       179 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (342)
                      .....++++.++....   +..+.+.+++..++ -.|...                                   -+..+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r-----------------------------------Re~ly   75 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR-----------------------------------RECLY   75 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc-----------------------------------hhhhh
Confidence            3455677777777654   44567888888876 333332                                   45677


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHH
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI  290 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  290 (342)
                      .++..+.+.|+|++++.+.+..++..|++..+....
T Consensus        76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            788888999999999999999999999887765443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.49  E-value=0.036  Score=47.36  Aligned_cols=123  Identities=16%  Similarity=0.098  Sum_probs=74.6

Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK  236 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                      ...|+.-.|-+-+..++...|.+|......+.+...+|+|+.+...+.-+-..-....                      
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~----------------------  357 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD----------------------  357 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc----------------------
Confidence            4457888888888888888899998888889999999999988877765544332221                      


Q ss_pred             HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                                    .+...+-.....+|++++|...-+-.+...-+++++...-+.....+|-++++..++++.+.++|
T Consensus       358 --------------~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~  422 (831)
T PRK15180        358 --------------STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP  422 (831)
T ss_pred             --------------hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence                          22222333344455555555555554444444444443334444444555555555555555544

>KOG2422|consensus

Probab=96.47  E-value=0.26  Score=43.35  Aligned_cols=116  Identities=15%  Similarity=0.081  Sum_probs=80.4

Q ss_pred             hCChHHHHHHHHHHhhc------------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc-----------------
Q psy3701          91 IGRSDPARRFLGKATSL------------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL-----------------  141 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------  141 (342)
                      ...|++|...|.-+...            .|.+.+.+..++.+...+|+.+-|....++++=.                 
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            34578888888777653            4666788999999999999998888877777632                 


Q ss_pred             ----CCCCchH---HHHHHHHHhhhCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH-HHhcChhHHHHHHHHH
Q psy3701         142 ----FKGCHLP---ALYVGLECGLTNNARLASKFFDLALSIAHE-DPFVIHEMGVIA-YQNHNYTVAENCFMEA  206 (342)
Q Consensus       142 ----~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~~~~~~A~~~~~~a  206 (342)
                          .|.+...   .+..-..+.+.|-+..|.++++-.+.++|. +|.....+..+| .+..+|+=-+..++..
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                1222211   122333456679999999999999999998 777665555554 3456676666666554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.47  E-value=0.22  Score=36.64  Aligned_cols=144  Identities=13%  Similarity=0.043  Sum_probs=87.9

Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDP--FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      ...+..++|+..|...-+..-...  -+....+.+....|+...|+..|..+-...|...                    
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~--------------------  128 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ--------------------  128 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc--------------------
Confidence            344666777777776665443332  3455667777888888888888887765544331                    


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL-VVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                                  .....+...-+.++...|-|++-..-.+..- ..+|-...+.-.||..-++.|++.+|..+|.+... 
T Consensus       129 ------------~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-  195 (221)
T COG4649         129 ------------IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-  195 (221)
T ss_pred             ------------hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-
Confidence                        0001244455666777788877655544322 12333445667788888888888888888888776 


Q ss_pred             ccCchhHHhHHHHHHHHhhh
Q psy3701         314 KRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       314 ~p~~~~~~~~l~~~~~~~~~  333 (342)
                      +..-|.....-+.+..++..
T Consensus       196 Da~aprnirqRAq~mldlI~  215 (221)
T COG4649         196 DAQAPRNIRQRAQIMLDLID  215 (221)
T ss_pred             cccCcHHHHHHHHHHHHHHh
Confidence            44444444444555544443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.37  E-value=0.46  Score=41.56  Aligned_cols=101  Identities=16%  Similarity=0.113  Sum_probs=58.4

Q ss_pred             HHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHH
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASK  167 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  167 (342)
                      ...++++++.+..... ++-|.- ..-...++..+...|..+.|+...        .++...+.+   ..+.|+.+.|.+
T Consensus       272 v~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A~~  339 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIALE  339 (443)
T ss_dssp             HHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHHHH
T ss_pred             HHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHHHH
Confidence            3467777766665411 122222 233555666777788888877752        233344443   356778888776


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701         168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA  206 (342)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  206 (342)
                      ..++     .+++..|..+|.....+|+++-|..+|+++
T Consensus       340 ~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  340 IAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            5433     346778889999999999998888888874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.33  E-value=0.008  Score=45.92  Aligned_cols=60  Identities=23%  Similarity=0.299  Sum_probs=50.4

Q ss_pred             HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc
Q psy3701          87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH  146 (342)
Q Consensus        87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  146 (342)
                      .....++.+.|.+.+.+++.+.|+....|+.+|......|+++.|...|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345677888888888888888888888888888888888888888888888888888754

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.33  E-value=0.21  Score=38.82  Aligned_cols=79  Identities=20%  Similarity=0.280  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHhCChHHHHHH
Q psy3701          27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYP------DSAIAWYAVGCYYYLIGRSDPARRF  100 (342)
Q Consensus        27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~  100 (342)
                      .....+.++..++.+|...|+-+.....+++|     ...+.++.....      +.....+.+|....+.|++++|.++
T Consensus       113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~A-----l~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~  187 (214)
T PF09986_consen  113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKA-----LEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRW  187 (214)
T ss_pred             CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH-----HHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            44456777777899999988866666666654     355555554332      2356788899999999999999999


Q ss_pred             HHHHhhcCCC
Q psy3701         101 LGKATSLDKL  110 (342)
Q Consensus       101 ~~~a~~~~~~  110 (342)
                      |.+++.....
T Consensus       188 fs~vi~~~~~  197 (214)
T PF09986_consen  188 FSRVIGSKKA  197 (214)
T ss_pred             HHHHHcCCCC
Confidence            9998876443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.29  E-value=0.011  Score=32.08  Aligned_cols=29  Identities=45%  Similarity=0.634  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVV  279 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  279 (342)
                      .++.++|.+|...|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45666777777777777777777766654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.38  Score=42.43  Aligned_cols=118  Identities=14%  Similarity=-0.045  Sum_probs=85.3

Q ss_pred             hcCCCcHHHHHH--HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHH-HhccCCCCchH
Q psy3701          72 DLYPDSAIAWYA--VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFN-AFNLFKGCHLP  148 (342)
Q Consensus        72 ~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~  148 (342)
                      ..+|.++..+..  +...+...++...+.-.+..++..+|++..+..+++......|....+...+.. +....|.+...
T Consensus        59 ~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~  138 (620)
T COG3914          59 AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF  138 (620)
T ss_pred             ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence            456666665433  466667777877888888888888888888888888887777776666655555 77777777666


Q ss_pred             HHHH------HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy3701         149 ALYV------GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI  189 (342)
Q Consensus       149 ~~~l------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  189 (342)
                      ...+      +.....+|+..++.....++....|.++.+...+...
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         139 LGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            5554      7777777888888888888888888876654444333

>KOG3783|consensus

Probab=96.26  E-value=0.46  Score=41.51  Aligned_cols=206  Identities=13%  Similarity=0.016  Sum_probs=118.3

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH
Q psy3701          35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA  114 (342)
Q Consensus        35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  114 (342)
                      .+..++.+...|+.+.|+..++.+..          .....-....++.+|.++..+.+|..|...+......+.-....
T Consensus       270 ll~~ar~l~~~g~~eaa~~~~~~~v~----------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~  339 (546)
T KOG3783|consen  270 LLMEARILSIKGNSEAAIDMESLSIP----------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF  339 (546)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHhccc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence            33467777777887777777777531          00001124456788888888999999999998887776544444


Q ss_pred             HHHhh-hHHHh--------hccHHHHHHHHHHHh---cc----CCCC--------------------chH--HHHHHHHH
Q psy3701         115 WLMYG-HSFAV--------ENEHDQAMAAYFNAF---NL----FKGC--------------------HLP--ALYVGLEC  156 (342)
Q Consensus       115 ~~~la-~~~~~--------~g~~~~A~~~~~~al---~~----~~~~--------------------~~~--~~~l~~~~  156 (342)
                      |..++ -|+..        .|+-+.|..+.+...   ..    .|-.                    ..+  ++.+  +|
T Consensus       340 Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El--~Y  417 (546)
T KOG3783|consen  340 YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL--AY  417 (546)
T ss_pred             HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH--HH
Confidence            44333 33322        234444333333222   11    1110                    001  1111  12


Q ss_pred             hhhC----CHHHHHHHHHHHH---hh-CCCCh-HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701         157 GLTN----NARLASKFFDLAL---SI-AHEDP-FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN  227 (342)
Q Consensus       157 ~~~~----~~~~A~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  227 (342)
                      .-.|    ..++.. -++...   .. ++++. -....+|.++..+|+...|..+|...++......             
T Consensus       418 ~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~-------------  483 (546)
T KOG3783|consen  418 FWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRT-------------  483 (546)
T ss_pred             HHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-------------
Confidence            2111    111222 111111   11 22222 2356789999999999999999998886532221             


Q ss_pred             HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCC
Q psy3701         228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPM  282 (342)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~  282 (342)
                                      ....-.+-+++.+|..+..+|. ..++..++.+|-....+
T Consensus       484 ----------------~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  484 ----------------EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             ----------------cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence                            1233346799999999999998 99999999999876643

>KOG1839|consensus

Probab=96.25  E-value=0.099  Score=50.27  Aligned_cols=176  Identities=13%  Similarity=0.036  Sum_probs=127.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAH-ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--  107 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~-~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--  107 (342)
                      .+......|+.....|.+.+|.+ ..++     +.++. ..-..+|+.+..+..++..+...++.++|+..-.++.-+  
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~s-----lnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~e 1004 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYE-LPES-----LNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISE 1004 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhh-hhhh-----hhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeec
Confidence            34444556777777777777766 2222     22333 234568999999999999999999999999998887654  


Q ss_pred             ------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701         108 ------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL--------FKGCHLPALYVGLECGLTNNARLASKFFDLAL  173 (342)
Q Consensus       108 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  173 (342)
                            .|+....+..++......++...|+..+.++..+        .|........++.++...++++.|+++.+.+.
T Consensus      1005 R~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~ 1084 (1236)
T KOG1839|consen 1005 RVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESAL 1084 (1236)
T ss_pred             hhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence                  2445567888888888888888999988888765        24444455668888888899999999999998


Q ss_pred             hhCCC--------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701         174 SIAHE--------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ  212 (342)
Q Consensus       174 ~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  212 (342)
                      ..+..        ....+..++.++...+++..|+...+....+.+.
T Consensus      1085 a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1085 AKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred             HHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence            85421        2345666777777777777777777666655443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.24  E-value=0.019  Score=46.03  Aligned_cols=86  Identities=13%  Similarity=0.031  Sum_probs=63.7

Q ss_pred             HHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH-HHHHHhhhCCHHHHHHHHHHHHhhCCCC
Q psy3701         101 LGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY-VGLECGLTNNARLASKFFDLALSIAHED  179 (342)
Q Consensus       101 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (342)
                      |.++....|.++..|...+......|.+.+--..|.++++..|.+.+.|.. -+.-+...++.+.+...|.++++.+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            444555567777777777777777777778788888888888888777776 4455667778888888888888888888


Q ss_pred             hHHHHHH
Q psy3701         180 PFVIHEM  186 (342)
Q Consensus       180 ~~~~~~l  186 (342)
                      |.+|...
T Consensus       176 p~iw~ey  182 (435)
T COG5191         176 PRIWIEY  182 (435)
T ss_pred             chHHHHH
Confidence            8776543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.22  E-value=0.089  Score=39.60  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhh
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHED---PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP  224 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  224 (342)
                      ++..+|..|.+.|+.++|++.|.++.......   .+.+..+..+.+..+++.....+..++-..-.... .     |  
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~-d-----~--  109 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG-D-----W--  109 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc-h-----H--
Confidence            44456666666666666666666655543222   34566777777788888888888777765543321 0     0  


Q ss_pred             HHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701         225 LLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV  279 (342)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  279 (342)
                                            .........-|..+...++|.+|...|-.+...
T Consensus       110 ----------------------~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  110 ----------------------ERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence                                  000123344566667778888888887766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1538|consensus

Probab=96.19  E-value=0.9  Score=40.82  Aligned_cols=69  Identities=10%  Similarity=-0.006  Sum_probs=39.3

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701          35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY--PDSAIAWYAVGCYYYLIGRSDPARRFLGKA  104 (342)
Q Consensus        35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  104 (342)
                      |..++......=+++-|.+.|.+...-.-+.+.-++-+..  ...|. -..++..+.-.|++.+|.+.|.+.
T Consensus       588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538|consen  588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHc
Confidence            3445555555556777777777665433333333332221  11122 245677778888888888888763

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.06  E-value=0.38  Score=35.43  Aligned_cols=136  Identities=14%  Similarity=0.056  Sum_probs=83.6

Q ss_pred             hhccHHHHHHHHHHHhccCCCCc--hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhcChh
Q psy3701         124 VENEHDQAMAAYFNAFNLFKGCH--LPALYVGLECGLTNNARLASKFFDLALSIAHED----PFVIHEMGVIAYQNHNYT  197 (342)
Q Consensus       124 ~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~  197 (342)
                      ..|..++|+..|...-+..-...  .+.+..+.+....|+...|+..|.++-...|..    ..+...-+.++...|.|+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            45667777777777666544332  344556777888888888888888876554321    122344566677778887


Q ss_pred             HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701         198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL  277 (342)
Q Consensus       198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  277 (342)
                      +.....+..-.  +.                                 +|....+.-.||..-.+.|++.+|...|....
T Consensus       150 dV~srvepLa~--d~---------------------------------n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         150 DVSSRVEPLAG--DG---------------------------------NPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             HHHHHhhhccC--CC---------------------------------ChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            76554443211  11                                 12224566678888888888888888888876


Q ss_pred             hhCCCchHHHHHHHHHHH
Q psy3701         278 VVAPMKASTFCCIGYIQA  295 (342)
Q Consensus       278 ~~~~~~~~~~~~l~~~~~  295 (342)
                      . +...+....+.+.+..
T Consensus       195 ~-Da~aprnirqRAq~ml  211 (221)
T COG4649         195 N-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             c-cccCcHHHHHHHHHHH
Confidence            5 4444444445554443

>KOG2422|consensus

Probab=96.01  E-value=0.41  Score=42.15  Aligned_cols=141  Identities=13%  Similarity=0.013  Sum_probs=100.1

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc-----CC----------------CcHH---HHHHhhhHHHhhcc
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL-----DK----------------LFLP---AWLMYGHSFAVENE  127 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~----------------~~~~---~~~~la~~~~~~g~  127 (342)
                      ...|-+.+.+..++.+...+|+.+-|....++++-.     .|                .+-.   +.+..-..+.+.|-
T Consensus       278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC  357 (665)
T KOG2422|consen  278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC  357 (665)
T ss_pred             ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            456888999999999999999999888888877521     12                2222   22334455667899


Q ss_pred             HHHHHHHHHHHhccCCC-CchHHHHHHHHHh-hhCCHHHHHHHHHHHH-----hhCCCChHHHHHHHHHHHHhcC---hh
Q psy3701         128 HDQAMAAYFNAFNLFKG-CHLPALYVGLECG-LTNNARLASKFFDLAL-----SIAHEDPFVIHEMGVIAYQNHN---YT  197 (342)
Q Consensus       128 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~---~~  197 (342)
                      +..|.++++-.+.++|. ++.+...+..+|. +..+|+--++.++..-     ...|+-+ .-..++..|.....   -+
T Consensus       358 ~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rq  436 (665)
T KOG2422|consen  358 WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQ  436 (665)
T ss_pred             hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHH
Confidence            99999999999999998 8877777666654 4567777777777653     2334332 23456666666555   56


Q ss_pred             HHHHHHHHHHHhhhhc
Q psy3701         198 VAENCFMEALSKVKQL  213 (342)
Q Consensus       198 ~A~~~~~~al~~~~~~  213 (342)
                      .|...+.+|+...|..
T Consensus       437 sa~~~l~qAl~~~P~v  452 (665)
T KOG2422|consen  437 SALNALLQALKHHPLV  452 (665)
T ss_pred             HHHHHHHHHHHhCcHH
Confidence            7889999999988854

>KOG1310|consensus

Probab=96.00  E-value=0.032  Score=48.18  Aligned_cols=90  Identities=16%  Similarity=-0.028  Sum_probs=66.9

Q ss_pred             hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh---hhHHHH
Q psy3701         193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL---KKYEEA  269 (342)
Q Consensus       193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A  269 (342)
                      .+....++..|.+++...|..                                    ...+.+.+.++++.   |+.-.|
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~------------------------------------~~~l~nraa~lmkRkW~~d~~~A  430 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDA------------------------------------IYLLENRAAALMKRKWRGDSYLA  430 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccch------------------------------------hHHHHhHHHHHHhhhccccHHHH
Confidence            344566777777777777666                                    46777777777654   456677


Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         270 LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       270 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      +.-+..+++++|....+|+.|+.++..++++.+|+.+...+....|.+.
T Consensus       431 lrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  431 LRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            7777888888888888888888888888888888888877777777443

>KOG1310|consensus

Probab=95.94  E-value=0.032  Score=48.18  Aligned_cols=92  Identities=13%  Similarity=0.033  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh---CChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHH
Q psy3701          53 DCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLI---GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHD  129 (342)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  129 (342)
                      +.|.......++..+.+.+...|.....+.+.+.++.+.   |+.-.|+.....+++++|....+|+.|+.++...+++.
T Consensus       383 d~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~  462 (758)
T KOG1310|consen  383 DGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL  462 (758)
T ss_pred             chhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence            334444456666667777777777777776666666654   34555666666677777777777777777777777777


Q ss_pred             HHHHHHHHHhccCCC
Q psy3701         130 QAMAAYFNAFNLFKG  144 (342)
Q Consensus       130 ~A~~~~~~al~~~~~  144 (342)
                      +|+.+...+....|.
T Consensus       463 eal~~~~alq~~~Pt  477 (758)
T KOG1310|consen  463 EALSCHWALQMSFPT  477 (758)
T ss_pred             HhhhhHHHHhhcCch
Confidence            777766666666664

>KOG4814|consensus

Probab=95.92  E-value=0.11  Score=46.02  Aligned_cols=95  Identities=11%  Similarity=-0.048  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL  154 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  154 (342)
                      +.+-|.-.++..+|..++++|...+..-|.+      ......+..||....+.|.|.+++++|-+.+|.++.....+..
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            3445677788899999999999998876654      3456778899999999999999999999999999988888888


Q ss_pred             HHhhhCCHHHHHHHHHHHHhh
Q psy3701         155 ECGLTNNARLASKFFDLALSI  175 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~  175 (342)
                      +....+.-++|+.+.......
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh
Confidence            888899999999988877654

>KOG1464|consensus

Probab=95.91  E-value=0.42  Score=37.92  Aligned_cols=168  Identities=11%  Similarity=0.053  Sum_probs=92.2

Q ss_pred             hccHHHHHHHHHHHhccCCCCc----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHH
Q psy3701         125 ENEHDQAMAAYFNAFNLFKGCH----LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAE  200 (342)
Q Consensus       125 ~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  200 (342)
                      ..+.++|+..|++++++.+...    .++-.+..+.++++++++-.+.|.+.+..-..           ....+--++++
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS-----------AVTrNySEKsI  108 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS-----------AVTRNYSEKSI  108 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-----------HHhccccHHHH
Confidence            3467777777777777766533    23334555666677777777666666542110           00001111122


Q ss_pred             HHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701         201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA  280 (342)
Q Consensus       201 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  280 (342)
                      ...-..+...             .-+..+...++..+..+.......-|...-..+|.+|+..|+|.+-.+.+++.-...
T Consensus       109 N~IlDyiStS-------------~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC  175 (440)
T KOG1464|consen  109 NSILDYISTS-------------KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC  175 (440)
T ss_pred             HHHHHHHhhh-------------hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence            1111111111             111223334444444444444455555666779999999999988777776654432


Q ss_pred             CC------------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         281 PM------------KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       281 ~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                      ..            -.+++..-...|..+.+...-...|++++.+...
T Consensus       176 q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA  223 (440)
T KOG1464|consen  176 QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA  223 (440)
T ss_pred             ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc
Confidence            11            1234555566777788888888889999877543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.84  E-value=0.023  Score=45.62  Aligned_cols=83  Identities=6%  Similarity=0.114  Sum_probs=73.7

Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHH-hhhHHHhhccHHHHHHHHHHHhccCCCCchH
Q psy3701          70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM-YGHSFAVENEHDQAMAAYFNAFNLFKGCHLP  148 (342)
Q Consensus        70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  148 (342)
                      .....|+++..|...+..-...+.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|.++..
T Consensus        99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i  178 (435)
T COG5191          99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI  178 (435)
T ss_pred             hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence            345678899999999999899999999999999999999999999987 5667888999999999999999999999988


Q ss_pred             HHHH
Q psy3701         149 ALYV  152 (342)
Q Consensus       149 ~~~l  152 (342)
                      |...
T Consensus       179 w~ey  182 (435)
T COG5191         179 WIEY  182 (435)
T ss_pred             HHHH
Confidence            7653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.84  E-value=0.022  Score=30.92  Aligned_cols=29  Identities=10%  Similarity=0.265  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         285 STFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      .++.++|.+|..+|++++|..++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            56789999999999999999999999876

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.1  Score=41.40  Aligned_cols=77  Identities=22%  Similarity=0.173  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      .....++=..+...++++.|....++.+..+|.++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+-..-..
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            34556667778899999999999999999999999999999999999999999999999999999999876544333

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.61  E-value=0.065  Score=35.53  Aligned_cols=65  Identities=25%  Similarity=0.309  Sum_probs=45.7

Q ss_pred             HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701         190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA  269 (342)
Q Consensus       190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  269 (342)
                      ..+.|+|.+|++.+.+.+...........                           ......+..++|.+....|++++|
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~---------------------------~~~~~~all~lA~~~~~~G~~~~A   60 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSS---------------------------NSGLAYALLNLAELHRRFGHYEEA   60 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchh---------------------------hHHHHHHHHHHHHHHHHhCCHHHH
Confidence            45678999999999998887665520000                           001234667788888888888888


Q ss_pred             HHHHHHHHhhCC
Q psy3701         270 LEFHKQALVVAP  281 (342)
Q Consensus       270 ~~~~~~al~~~~  281 (342)
                      +..+++++++..
T Consensus        61 ~~~l~eAi~~Ar   72 (94)
T PF12862_consen   61 LQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHHHHHHH
Confidence            888888887653

>KOG3807|consensus

Probab=95.53  E-value=1.1  Score=36.78  Aligned_cols=118  Identities=8%  Similarity=0.022  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC
Q psy3701          82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN  161 (342)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  161 (342)
                      +.+-...++..+..+-++....+++++|+...++..++.--  .--..+|.+.++++++....    .+.........|.
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~  261 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQSQQCQHQSP  261 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhcc
Confidence            44445556667777778888888888888888888777532  22355677777777765332    1111111122222


Q ss_pred             HHHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701         162 ARLASKFFDLALSIAHEDP--FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ  212 (342)
Q Consensus       162 ~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  212 (342)
                      ..+|.      .+. ..+.  .+-..++.|..++|+..+|++.++...+..|-
T Consensus       262 ~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl  307 (556)
T KOG3807|consen  262 QHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL  307 (556)
T ss_pred             chhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence            22221      111 1122  23456788888899999999988887776653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.36  E-value=0.32  Score=32.18  Aligned_cols=58  Identities=12%  Similarity=0.115  Sum_probs=41.4

Q ss_pred             hhhCCHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         157 GLTNNARLASKFFDLALSIAHE---------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      .+.|++.+|++.+.+.+.....         ...+...+|.++...|++++|+..+++++++.....
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~   75 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG   75 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence            4456666666665555543221         134567789999999999999999999999887763

>KOG0529|consensus

Probab=95.32  E-value=1.4  Score=37.30  Aligned_cols=178  Identities=12%  Similarity=0.067  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701          95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus        95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      ++++..-.+.+..+|+...+|...-.++...-..          .+..|.            .+..-.++-+.+...+++
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~----------~~~~~~------------ek~~~ld~eL~~~~~~L~  103 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR----------AQLEPL------------EKQALLDEELKYVESALK  103 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh----------hcCCHH------------HHHHhhHHHHHHHHHHHH
Confidence            5666777777777887766665433332211110          011111            111234556666677777


Q ss_pred             hCCCChHHHHHHHHHHHHhcC--hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHH
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHN--YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL  252 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (342)
                      .+|++..+|+....++.+.+.  +..=+.+.+++++.+|.+-                                    .+
T Consensus       104 ~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf------------------------------------h~  147 (421)
T KOG0529|consen  104 VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF------------------------------------HA  147 (421)
T ss_pred             hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc------------------------------------cc
Confidence            777777777777777766543  4566777777777777662                                    23


Q ss_pred             HHHHHHHHHHh----hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH------hCC------hHHHHHHHHHHHhcccC
Q psy3701         253 LNNLGHVNRKL----KKYEEALEFHKQALVVAPMKASTFCCIGYIQAL------TGD------LDSAVNYFHKTMALKRD  316 (342)
Q Consensus       253 ~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~------~g~------~~~A~~~~~~al~~~p~  316 (342)
                      |...=.+....    ....+=+++..+++..++.+..+|.....++..      .|+      ...-.+.-..++-.+|+
T Consensus       148 W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~  227 (421)
T KOG0529|consen  148 WHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPE  227 (421)
T ss_pred             hHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence            32222222111    123444566666666666666666666555542      221      12233444555666777


Q ss_pred             chhHHhHHHHHHHH
Q psy3701         317 DSFATTMLSYVIEQ  330 (342)
Q Consensus       317 ~~~~~~~l~~~~~~  330 (342)
                      |..+|..-..++.+
T Consensus       228 DqS~WfY~rWLl~~  241 (421)
T KOG0529|consen  228 DQSCWFYHRWLLGR  241 (421)
T ss_pred             ccceeeehHHhhcc
Confidence            77666654444443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.31  E-value=0.12  Score=42.30  Aligned_cols=62  Identities=19%  Similarity=0.318  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      |+.+|.+|+.+.|++...+..+|.+....|+.-.|+-+|-+++....-.+.+..+|..+++.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999998765568899999999888

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.24  E-value=0.17  Score=42.66  Aligned_cols=108  Identities=12%  Similarity=0.083  Sum_probs=76.0

Q ss_pred             HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701         186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      -|...+++++|..|..-|..++++..+..  ........   ..++...             -..-+-..+..||.++++
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~--a~~k~~~~---~~~di~~-------------vaSfIetklv~CYL~~rk  243 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGA--ALSKPFKA---SAEDISS-------------VASFIETKLVTCYLRMRK  243 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhh--hccCCCCC---ChhhHHH-------------HHHHHHHHHHHhhhhcCC
Confidence            35667788888888888888888765542  00000000   0000000             001244568899999999


Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701         266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM  311 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  311 (342)
                      .+-|+....+.+..+|....-+...+.++..+.+|.+|-+.+--+.
T Consensus       244 pdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  244 PDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             CchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987765553

>KOG0529|consensus

Probab=95.04  E-value=1.9  Score=36.58  Aligned_cols=157  Identities=10%  Similarity=0.033  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------------hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc-
Q psy3701          61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYL------------IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE-  127 (342)
Q Consensus        61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-  127 (342)
                      .+++.+-.+++..+|+...+|...=.++..            ..-.++-+.+...++..+|+...+|+....++.+.+. 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~  125 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS  125 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence            566677777889999988888765443322            2245677788899999999999999999999887664 


Q ss_pred             -HHHHHHHHHHHhccCCCCchHHHHHHHHHhhh----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH------hcC-
Q psy3701         128 -HDQAMAAYFNAFNLFKGCHLPALYVGLECGLT----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ------NHN-  195 (342)
Q Consensus       128 -~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~-  195 (342)
                       +..-+...+++++.+|.+..+|.+.-.+....    ....+=+++..+++..++.+..+|.....++..      .|+ 
T Consensus       126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~  205 (421)
T KOG0529|consen  126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF  205 (421)
T ss_pred             hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence             68889999999999999988887754443332    345677888999999999999999887766652      231 


Q ss_pred             -----hhHHHHHHHHHHHhhhhcCccc
Q psy3701         196 -----YTVAENCFMEALSKVKQLGGEI  217 (342)
Q Consensus       196 -----~~~A~~~~~~al~~~~~~~~~~  217 (342)
                           ...-+..-..++-.+|.+...+
T Consensus       206 ~~~~~l~sEle~v~saiFTdp~DqS~W  232 (421)
T KOG0529|consen  206 MPKELLQSELEMVHSAIFTDPEDQSCW  232 (421)
T ss_pred             CCHHHHHHHHHHHHHHHhcCcccccee
Confidence                 1233455556666778776333

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.94  E-value=0.1  Score=27.27  Aligned_cols=30  Identities=20%  Similarity=0.355  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHhCChHHHHHH--HHHHHhccc
Q psy3701         286 TFCCIGYIQALTGDLDSAVNY--FHKTMALKR  315 (342)
Q Consensus       286 ~~~~l~~~~~~~g~~~~A~~~--~~~al~~~p  315 (342)
                      .++.+|..+..+|++++|+..  |+-+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344555555555555555555  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.87  E-value=0.099  Score=27.36  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHhCChHHHHHH--HHHHhhcCCC
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRF--LGKATSLDKL  110 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~--~~~a~~~~~~  110 (342)
                      +.++.+|..+..+|++++|+..  |.-+..+++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3456666666667777777766  3355544443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.70  E-value=2.8  Score=36.84  Aligned_cols=82  Identities=16%  Similarity=0.038  Sum_probs=45.0

Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                      ++..|..||.....+|+++-|..+|+++-.        +-.+..+|...|+.+.-.+..+.+.....     ++..-.++
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~  412 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAA  412 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHH
Confidence            456777777777777777777777776532        33455556666666555444444433221     11222334


Q ss_pred             HHhcChhHHHHHHHH
Q psy3701         191 YQNHNYTVAENCFME  205 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~  205 (342)
                      +..|+.++.++.+.+
T Consensus       413 ~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  413 LLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHT-HHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            455666666666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.64  E-value=0.062  Score=25.71  Aligned_cols=21  Identities=19%  Similarity=0.148  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHhCChHHHHHHH
Q psy3701         287 FCCIGYIQALTGDLDSAVNYF  307 (342)
Q Consensus       287 ~~~l~~~~~~~g~~~~A~~~~  307 (342)
                      ...+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            444555555555555555544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.58  E-value=2.7  Score=36.24  Aligned_cols=131  Identities=8%  Similarity=-0.065  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH-----HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLP-----AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL  154 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  154 (342)
                      .+..-|-++..++++.+|...|.+..+...+.+.     .+.++..-..-.++.+.-....-..-+..|..+......|.
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            4556688888999999999999998776554432     23333333344566777666666667777887788888899


Q ss_pred             HHhhhCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhh
Q psy3701         155 ECGLTNNARLASKFFDLALSIAHED---------------PFVIHEMGVIAYQNHNYTVAENCFMEALSKV  210 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  210 (342)
                      ..++.+.+.+|++.+......-.+.               ...-...+.++...|++.++...+.+.+..-
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l  158 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL  158 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            9999999999999887665442111               1112345788899999999999998887653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.51  E-value=0.3  Score=39.42  Aligned_cols=64  Identities=9%  Similarity=0.144  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      ..++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|++.-..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4688889999999999999999999999999999999999999999999999999999987663

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.50  E-value=0.68  Score=39.25  Aligned_cols=58  Identities=14%  Similarity=0.097  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHH
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA  138 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  138 (342)
                      --.+..||...++.+-|+....+.+.++|....-+...|.++....+|.+|-..+--+
T Consensus       231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999987765443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.49  E-value=0.29  Score=39.00  Aligned_cols=70  Identities=11%  Similarity=-0.021  Sum_probs=51.2

Q ss_pred             HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      ++=..+...++++.|..+.++.+.++|.++..+.-.|.+|.+.|.+.-|++.+...++..|+++.+-...
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            3445666777777777777777777777777777777778777877777777777777777776654433

>KOG2581|consensus

Probab=94.48  E-value=2.7  Score=35.69  Aligned_cols=66  Identities=24%  Similarity=0.269  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhh--C--CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVV--A--PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  317 (342)
                      ..+.+-..|...+.|+.|.....+..--  .  ...+...+.+|.+..-+++|..|.++|-+|+...|.+
T Consensus       211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            3334445555556666665555443310  0  0122344556666666666666666666666666653

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.47  E-value=0.57  Score=29.42  Aligned_cols=60  Identities=15%  Similarity=0.092  Sum_probs=42.3

Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH---HHHHHhcChhHHHHHHHHHHHhhh
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG---VIAYQNHNYTVAENCFMEALSKVK  211 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~al~~~~  211 (342)
                      -|.-++..++.++|+..++++++..++.+..+..+|   .+|...|+|.+.+.+..+-+.+..
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~   74 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE   74 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455677788888888888887777766555544   567788888888887766666544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.28  E-value=0.071  Score=25.49  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHH
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFL  101 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~  101 (342)
                      +.+.+|.++...|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.23  E-value=0.31  Score=39.35  Aligned_cols=65  Identities=9%  Similarity=-0.026  Sum_probs=50.1

Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI  175 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  175 (342)
                      ...++..++..+...|+++.++..+++.+..+|.+...+..+-..|...|+...|+..|++.-+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            35567777777777888888888888888888887777777778888888888888888777653

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.03  E-value=0.73  Score=44.11  Aligned_cols=106  Identities=7%  Similarity=-0.048  Sum_probs=71.2

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh-
Q psy3701         185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL-  263 (342)
Q Consensus       185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  263 (342)
                      ....++...+.|+.|+..|++.....|...+                                 --++.+..|.++... 
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~  526 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKE---------------------------------GYEAQFRLGITLLEKA  526 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCccc---------------------------------chHHHHHhhHHHHHHH
Confidence            4456777888999999999999888876630                                 024555556555432 


Q ss_pred             ------hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701         264 ------KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML  324 (342)
Q Consensus       264 ------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  324 (342)
                            ..+++|+.-|++.- -.|.-|--|...|.+|.++|++++-++++.-+++..|++|..-..-
T Consensus       527 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (932)
T PRK13184        527 SEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLR  592 (932)
T ss_pred             HhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHH
Confidence                  24566666665532 2345555677777778888888888888888888888777654433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.99  E-value=0.093  Score=27.82  Aligned_cols=28  Identities=14%  Similarity=-0.009  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      ++..+|.+....++|++|+..|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4555666666666666666666665543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2114|consensus

Probab=93.90  E-value=3  Score=38.80  Aligned_cols=52  Identities=25%  Similarity=0.200  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          55 YKGALLADLFKLAHELVDLYPD-SAIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        55 ~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      +++.+++-|+.+++.. ..+++ -...+...|..++..|++++|...|-+.+..
T Consensus       345 ~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  345 FKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            3444444444444432 33333 2466778899999999999999999998864

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.88  E-value=0.14  Score=27.11  Aligned_cols=29  Identities=14%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         285 STFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       285 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      +++..+|.+-...++|++|+.-|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35666777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.63  E-value=7.4  Score=37.70  Aligned_cols=129  Identities=17%  Similarity=0.022  Sum_probs=90.5

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhh-------ccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701          84 VGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVE-------NEHDQAMAAYFNAFNLFKGCHLPALYVG  153 (342)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~~~~~~~~~~l~  153 (342)
                      ...++...+.|++|+..|++.-...|..   -++.+..|.....+       ..+++|+..|++.- -.|.-+.-+...|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence            3456677788899999999988888765   35667777666543       24677887777654 3466677788888


Q ss_pred             HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc-----ChhHHHHHHHHHHHhhhhc
Q psy3701         154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH-----NYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~al~~~~~~  213 (342)
                      .+|.++|++++-++++.-+++..|.+|.+-...-.+-+++.     +-..|....--++...|..
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK  624 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999988765443333222221     2245556666667777765

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=93.60  E-value=0.56  Score=36.04  Aligned_cols=65  Identities=12%  Similarity=0.163  Sum_probs=57.1

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701         257 GHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT  321 (342)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  321 (342)
                      ..-+.+.+..++|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|++..-.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a   72 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGA   72 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHH
Confidence            34466778999999999999999999999888899999999999999999999999999887433

>KOG3807|consensus

Probab=93.45  E-value=3.8  Score=33.83  Aligned_cols=144  Identities=15%  Similarity=0.054  Sum_probs=82.5

Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG  230 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                      .+-....+..+..+-++.-..+++++|....++..++.-  ...-..+|.+.++++++.....-             +..
T Consensus       189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~y-------------r~s  253 (556)
T KOG3807|consen  189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIY-------------RQS  253 (556)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHH-------------hhH
Confidence            344445555667777777788888888887777766542  22334577777777777544331             000


Q ss_pred             hhHHHHHHHhchhccCCCC--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch--HHHHHHHHHHHHhCChHHHHHH
Q psy3701         231 HKAEDKVKQLGGEIIADKW--EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA--STFCCIGYIQALTGDLDSAVNY  306 (342)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~  306 (342)
                      +.....-...+.....+..  ..+...++.|..++|+..+|++.++...+..|-..  .++-++-..+....-|.+....
T Consensus       254 qq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav  333 (556)
T KOG3807|consen  254 QQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV  333 (556)
T ss_pred             HHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000000000001111111  23455689999999999999999999888776322  4555666666665555544444


Q ss_pred             HHH
Q psy3701         307 FHK  309 (342)
Q Consensus       307 ~~~  309 (342)
                      +-+
T Consensus       334 Lak  336 (556)
T KOG3807|consen  334 LAK  336 (556)
T ss_pred             HHh
Confidence            433

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=93.43  E-value=3.5  Score=33.32  Aligned_cols=202  Identities=9%  Similarity=-0.025  Sum_probs=107.0

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHhhcCCC--------cHHHHHHhhhHHHhhccHHHHHHHHH---HHhccCCC--CchHH
Q psy3701          83 AVGCYYYLIGRSDPARRFLGKATSLDKL--------FLPAWLMYGHSFAVENEHDQAMAAYF---NAFNLFKG--CHLPA  149 (342)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~~~--~~~~~  149 (342)
                      .++.-....+++++|+..|.+.+...-.        ...+...++.+|...|++..--+...   .+......  .....
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii   87 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII   87 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence            3444445556666666666666554111        12234556666666665543222221   11111111  00000


Q ss_pred             HHH-HHHHhhhCCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccch
Q psy3701         150 LYV-GLECGLTNNARLASKFFDLALSIAHEDP------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKW  222 (342)
Q Consensus       150 ~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  222 (342)
                      ..+ -..-.....++.-+..+...++......      ..-..+..++++.|+|.+|+......+..-....        
T Consensus        88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--------  159 (421)
T COG5159          88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--------  159 (421)
T ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--------
Confidence            000 0111122344555555555544332222      1234567888999999999988777665433221        


Q ss_pred             hhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCchHHH--HHHHHHHH
Q psy3701         223 EPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMKASTF--CCIGYIQA  295 (342)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~--~~l~~~~~  295 (342)
                                            ..+....++..-..+|....+..++...+..|-..     .|....+.  ..-|....
T Consensus       160 ----------------------DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc  217 (421)
T COG5159         160 ----------------------DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC  217 (421)
T ss_pred             ----------------------CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence                                  33444567777788888888888887777666443     23222221  22345556


Q ss_pred             HhCChHHHHHHHHHHHhcc
Q psy3701         296 LTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       296 ~~g~~~~A~~~~~~al~~~  314 (342)
                      .-.+|..|..+|-++++-.
T Consensus       218 dd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         218 DDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             ccccchhHHHHHHHHHhcc
Confidence            6678999999999988743

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.36  E-value=1  Score=28.29  Aligned_cols=53  Identities=11%  Similarity=-0.066  Sum_probs=29.9

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHh---hhHHHhhccHHHHHHHHH
Q psy3701          84 VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMY---GHSFAVENEHDQAMAAYF  136 (342)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l---a~~~~~~g~~~~A~~~~~  136 (342)
                      .|.-++...+.++|+..++++++..++.++-+..+   ..++...|++.+++.+..
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556666666666666666665555444333   345556666666655543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK11619 lytic murein transglycosylase; Provisional

Probab=92.98  E-value=7.7  Score=36.07  Aligned_cols=57  Identities=9%  Similarity=-0.096  Sum_probs=43.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      ........++++.+...+...-..........+.+|..+...|+.++|...|+++..
T Consensus       318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            344455788888877777775443345667788999999999999999999999854

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.93  E-value=3.3  Score=31.65  Aligned_cols=54  Identities=13%  Similarity=0.117  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC----chHHHHHHHHHHHHhCChHHHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM----KASTFCCIGYIQALTGDLDSAV  304 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~  304 (342)
                      ++..+.+|..|. ..+.++|+..+-+++++.+.    +++++..|+.++.++|+++.|.
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            566667776665 45677777777777776533    3677777777777777777764

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.92  E-value=0.42  Score=39.05  Aligned_cols=62  Identities=11%  Similarity=-0.040  Sum_probs=41.5

Q ss_pred             HHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701          97 ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus        97 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      |+.+|.+|+.+.|.+...|..+|.+....|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56777777777777777777777777777777777777777776654455566666655555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=92.88  E-value=4.8  Score=33.36  Aligned_cols=162  Identities=10%  Similarity=-0.001  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHhccCCCCchHHHHHHHHHhhh--------------------------CCHHHHHHHHHHHHhhC-CCChH
Q psy3701         129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLT--------------------------NNARLASKFFDLALSIA-HEDPF  181 (342)
Q Consensus       129 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~A~~~~~~~~~~~-~~~~~  181 (342)
                      ++|+..-+-...+.|+.++++-.++.+....                          +-.+++...+.+++... |.-..
T Consensus       213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq  292 (415)
T COG4941         213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ  292 (415)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence            5666666666666676666665555443322                          23456666666665543 22222


Q ss_pred             HHHHHHHHHHH-----hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHH
Q psy3701         182 VIHEMGVIAYQ-----NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNL  256 (342)
Q Consensus       182 ~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (342)
                      +.-.++.++..     .-+|..-..+|+-.....|+.                                     .+-.|.
T Consensus       293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-------------------------------------vV~LNR  335 (415)
T COG4941         293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-------------------------------------VVTLNR  335 (415)
T ss_pred             HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-------------------------------------eEeehH
Confidence            22333333332     224445555555555555544                                     244556


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         257 GHVNRKLKKYEEALEFHKQALVV--APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      +.+..+..-.+.++...+.....  -......+...|..+.++|+.++|...|++++.+.++..+..+...+.
T Consensus       336 AVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~  408 (415)
T COG4941         336 AVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL  408 (415)
T ss_pred             HHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            66665555556666666555443  123445667789999999999999999999999998887766655443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.73  E-value=6.6  Score=34.63  Aligned_cols=60  Identities=17%  Similarity=0.052  Sum_probs=40.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH--------------------hCChHHHHHHHHHHHhcccCc
Q psy3701         258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL--------------------TGDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~al~~~p~~  317 (342)
                      .-|....++++|++.+.-.++.+..+..+.-.+..-+..                    -.++.+++.-|++.+..+..+
T Consensus       213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn  292 (711)
T COG1747         213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN  292 (711)
T ss_pred             HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence            445667889999999999998888777666555544443                    234556666666666555444

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.72  E-value=2.4  Score=32.40  Aligned_cols=73  Identities=11%  Similarity=0.124  Sum_probs=51.3

Q ss_pred             cHHHHHHHHHHHhccCC-CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhcChhHHH
Q psy3701         127 EHDQAMAAYFNAFNLFK-GCHLPALYVGLECGLTNNARLASKFFDLALSIAHE----DPFVIHEMGVIAYQNHNYTVAE  200 (342)
Q Consensus       127 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~  200 (342)
                      .-++|...|-++-.... +++...+.+|..|. ..+.++++..+.+++++.+.    +++++..++.++..+|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            34566666665543322 24455555665555 67888899999988887644    4788999999999999998874

>KOG0546|consensus

Probab=92.49  E-value=0.29  Score=40.37  Aligned_cols=127  Identities=17%  Similarity=0.127  Sum_probs=89.3

Q ss_pred             HHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701         186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       186 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      .+.-.++.++++.|..-+.+++..-...+..   ..+            +...  +.............+++.+-...+.
T Consensus       228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~---~~~------------e~~~--~~~~~~~~r~~~~~n~~~~~lk~~~  290 (372)
T KOG0546|consen  228 IGNKEFKKQRYREALAKYRKALRYLSEQSRD---REK------------EQEN--RIPPLRELRFSIRRNLAAVGLKVKG  290 (372)
T ss_pred             cchhhhhhccHhHHHHHHHHHhhhhcccccc---ccc------------cccc--ccccccccccccccchHHhcccccC
Confidence            4556778888888888888877643211000   000            0000  0001111123455668888889999


Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      +..|+.....++..++....+++..+..+....++++|++.++.+....|++......+...-.
T Consensus       291 ~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  291 RGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             CCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            9999998888888888889999999999999999999999999999999999977766654443

>KOG1538|consensus

Probab=92.04  E-value=9.4  Score=34.80  Aligned_cols=22  Identities=23%  Similarity=0.187  Sum_probs=15.1

Q ss_pred             HHhHHHHhhccHHHHHHHHHHH
Q psy3701          37 LKGRVYEALENRALAADCYKGA   58 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~   58 (342)
                      +++....-.|.|.+|.++|.+.
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHc
Confidence            4566666677777777777664

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.99  E-value=0.78  Score=36.91  Aligned_cols=59  Identities=8%  Similarity=-0.060  Sum_probs=45.2

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701         115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL  173 (342)
Q Consensus       115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  173 (342)
                      ....+..|...|.+.+|+++.++++.++|-+...+..+-.++...|+--.+.+.|++.-
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34456667778888888888888888888888888888888888888777777776654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.99  E-value=0.75  Score=37.00  Aligned_cols=60  Identities=23%  Similarity=0.284  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM  311 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  311 (342)
                      .+...+..|...|.+.+|+++.++++..+|-+...+..+-.++..+|+--.+...|++.-
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            445567778899999999999999999999999999999999999999888888877653

>KOG1463|consensus

Probab=91.70  E-value=6.9  Score=32.53  Aligned_cols=256  Identities=16%  Similarity=0.070  Sum_probs=139.5

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGAL-------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT  105 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~-------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  105 (342)
                      .....+|+.+...|+..+-.+...+..       ..++..+.+.+++..+..             .+..+.-+..+..++
T Consensus        49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~-------------~~~~~~~i~l~~~cI  115 (411)
T KOG1463|consen   49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKI-------------DDGTGDQIELCTECI  115 (411)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-------------CCCcchHHHHHHHHH
Confidence            344467888888888877666555533       123333333333322211             112223333444444


Q ss_pred             hcCCCcHH------HHHHhhhHHHhhccHHHHHHHHHHHhc----cCCC--CchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701         106 SLDKLFLP------AWLMYGHSFAVENEHDQAMAAYFNAFN----LFKG--CHLPALYVGLECGLTNNARLASKFFDLAL  173 (342)
Q Consensus       106 ~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  173 (342)
                      +.....-.      .-..+...|...++|.+|+......++    ++..  -..++..-...|....+..+|...+..+-
T Consensus       116 eWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsAR  195 (411)
T KOG1463|consen  116 EWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSAR  195 (411)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHH
Confidence            33222211      234578889999999999988766554    2322  23455566778888999999988888775


Q ss_pred             hhC-----CCCh--HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701         174 SIA-----HEDP--FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA  246 (342)
Q Consensus       174 ~~~-----~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (342)
                      ...     |...  .+-..-|.++....+|..|..+|-++++-...-....      .+.                    
T Consensus       196 T~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v------~A~--------------------  249 (411)
T KOG1463|consen  196 TTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV------KAL--------------------  249 (411)
T ss_pred             HhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH------HHH--------------------
Confidence            432     2111  1222335566666899999999999887554332000      000                    


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH--hCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701         247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL--TGDLDSAVNYFHKTMALKRDDSFATTML  324 (342)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l  324 (342)
                        ...-|..+..+....-+--.++-.-+.+++....+.++....+.++.+  +.+|+.|...|+.-+..+|   .+...+
T Consensus       250 --~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl  324 (411)
T KOG1463|consen  250 --TSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHL  324 (411)
T ss_pred             --HHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHH
Confidence              001122222222222222334444445555555666777777777653  4577777777777666544   555555


Q ss_pred             HHHHHHhh
Q psy3701         325 SYVIEQLI  332 (342)
Q Consensus       325 ~~~~~~~~  332 (342)
                      ..++..+.
T Consensus       325 ~~Lyd~lL  332 (411)
T KOG1463|consen  325 QSLYDNLL  332 (411)
T ss_pred             HHHHHHHH
Confidence            55554443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.40  E-value=1.2  Score=24.53  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=12.9

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHH
Q psy3701         289 CIGYIQALTGDLDSAVNYFHKTM  311 (342)
Q Consensus       289 ~l~~~~~~~g~~~~A~~~~~~al  311 (342)
                      .++..|..+|+.+.|+..+++++
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHH
Confidence            45555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.23  E-value=5.9  Score=34.16  Aligned_cols=58  Identities=14%  Similarity=-0.051  Sum_probs=38.9

Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHh--------hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701         152 VGLECGLTNNARLASKFFDLALS--------IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK  209 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  209 (342)
                      +.+++..+|+|..|++.++..--        ..+-+..+++..|.+|+.+++|.+|++.|..++-.
T Consensus       128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777777666554311        11224456788899999999999999988887654

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.22  E-value=2.1  Score=36.77  Aligned_cols=68  Identities=13%  Similarity=0.064  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      ...+.+++.-+|+|..|++.++.. +++....                           -...++....+++.+|-+|+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l---------------------------~~~V~~~~is~~YyvGFaylM  176 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGL---------------------------YTKVPACHISTYYYVGFAYLM  176 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-Ccccchh---------------------------hccCcchheehHHHHHHHHHH
Confidence            456778889999999999988653 2221110                           001223335788999999999


Q ss_pred             hhhHHHHHHHHHHHHh
Q psy3701         263 LKKYEEALEFHKQALV  278 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~  278 (342)
                      +++|.+|++.|...+.
T Consensus       177 lrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  177 LRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998874

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=91.18  E-value=0.74  Score=22.86  Aligned_cols=29  Identities=14%  Similarity=0.080  Sum_probs=19.6

Q ss_pred             CCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701         160 NNARLASKFFDLALSIAHEDPFVIHEMGV  188 (342)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  188 (342)
                      |+.+.+...|++++...|.++.+|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            35566777777777777777777766554

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=91.03  E-value=6.7  Score=31.19  Aligned_cols=60  Identities=5%  Similarity=-0.020  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCCc-HHHHHHhhhHHH-hhccHHHHHHHHHHHhc
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLF-LPAWLMYGHSFA-VENEHDQAMAAYFNAFN  140 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~-~~g~~~~A~~~~~~al~  140 (342)
                      +..++.+..+.|+|++.+.+.++++..+|.. .+-...++.+|- ..|....+...+.....
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~   65 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ   65 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence            5667888888999999999999998887653 333444444442 23444444444444333

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.87  E-value=0.73  Score=22.87  Aligned_cols=27  Identities=19%  Similarity=0.145  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701         265 KYEEALEFHKQALVVAPMKASTFCCIG  291 (342)
Q Consensus       265 ~~~~A~~~~~~al~~~~~~~~~~~~l~  291 (342)
                      +.+.|...|++++...|.++..|...+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            445555566666655555555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.75  E-value=2.5  Score=33.95  Aligned_cols=61  Identities=11%  Similarity=0.050  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HHHHHHhhhHHHhhccHHHHHHHHHHH
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNA  138 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a  138 (342)
                      ......+|..|+..|++++|.++|+.+.......      ......+..|+...|+.+..+...-+.
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3445667778888888888888887775432221      233445566666666666666554443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.39  E-value=0.69  Score=25.49  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701         254 NNLGHVNRKLKKYEEALEFHKQALVV  279 (342)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~al~~  279 (342)
                      +.++.+|..+|+.+.|.+.+++.+..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            57899999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=90.25  E-value=5.4  Score=34.36  Aligned_cols=23  Identities=17%  Similarity=0.011  Sum_probs=14.3

Q ss_pred             HHHHHHhCChHHHHHHHHHHhhc
Q psy3701          85 GCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      |..++..-++.+|.+.+++.+..
T Consensus       176 ~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  176 GYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHH
Confidence            44445566777777777766554

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=90.24  E-value=11  Score=32.52  Aligned_cols=58  Identities=12%  Similarity=0.008  Sum_probs=33.3

Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCCChH--HHHH--HHHHHHHhcChhHHHHHHHHHHHh
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHEDPF--VIHE--MGVIAYQNHNYTVAENCFMEALSK  209 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~--l~~~~~~~~~~~~A~~~~~~al~~  209 (342)
                      .+...+..++|..|.+.+......-|....  .+..  .|..+...-++++|.+.+++.+..
T Consensus       137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  137 RAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            344556667777777777776664233322  2222  233444566777777777776654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.01  E-value=13  Score=32.90  Aligned_cols=78  Identities=14%  Similarity=0.079  Sum_probs=42.2

Q ss_pred             HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701         190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA  269 (342)
Q Consensus       190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  269 (342)
                      |....++++|+..+...++.+..+.     .+.-.+..++...+           ......+-|....++-..-.++.++
T Consensus       215 Ys~~eN~~eai~Ilk~il~~d~k~~-----~ar~~~i~~lRd~y-----------~~~~~~e~yl~~s~i~~~~rnf~~~  278 (711)
T COG1747         215 YSENENWTEAIRILKHILEHDEKDV-----WARKEIIENLRDKY-----------RGHSQLEEYLKISNISQSGRNFFEA  278 (711)
T ss_pred             hccccCHHHHHHHHHHHhhhcchhh-----hHHHHHHHHHHHHh-----------ccchhHHHHHHhcchhhccccHHHH
Confidence            3456788899999988888877762     11111111111111           1111123344444444445677888


Q ss_pred             HHHHHHHHhhCCCc
Q psy3701         270 LEFHKQALVVAPMK  283 (342)
Q Consensus       270 ~~~~~~al~~~~~~  283 (342)
                      +.-|++.+..+..+
T Consensus       279 l~dFek~m~f~eGn  292 (711)
T COG1747         279 LNDFEKLMHFDEGN  292 (711)
T ss_pred             HHHHHHHheeccCc
Confidence            88888887665443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=89.85  E-value=5.7  Score=28.44  Aligned_cols=47  Identities=11%  Similarity=0.046  Sum_probs=25.5

Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFM  204 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  204 (342)
                      ...+.....+.+++..+..++.++..+..+..++.+. +..+.+..++
T Consensus        18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~   64 (140)
T smart00299       18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD   64 (140)
T ss_pred             HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence            3345566666666666666555556666666666543 2233344443

>PF12854 PPR_1: PPR repeat

Probab=89.77  E-value=1.1  Score=22.91  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHH
Q psy3701         285 STFCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       285 ~~~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                      .+|..+-..+.+.|+.++|.+.|+
T Consensus         8 ~ty~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen    8 VTYNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344444444555555555554444

>PF13041 PPR_2: PPR repeat family

Probab=89.66  E-value=2.4  Score=23.90  Aligned_cols=29  Identities=31%  Similarity=0.208  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVV  279 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  279 (342)
                      ..|..+-..+.+.|++++|.+.|++..+.
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            45666667777777777777777776654

>PF12854 PPR_1: PPR repeat

Probab=89.60  E-value=1.1  Score=22.98  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=16.3

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGK  103 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~  103 (342)
                      +..+|..+-..+.+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            345566666666666666666666554

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.58  E-value=3.6  Score=25.77  Aligned_cols=46  Identities=24%  Similarity=0.250  Sum_probs=35.7

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWY   82 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~   82 (342)
                      +..+...+.-+-..|++++|+.+|+++     +.++.+++...|+++.-..
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~a-----Ie~L~q~~~~~pD~~~k~~   51 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKA-----IEVLSQIVKNYPDSPTRLI   51 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHHHHHHHhCCChHHHHH
Confidence            344556788888999999999999996     4778888888888765433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.33  E-value=2.4  Score=30.51  Aligned_cols=50  Identities=18%  Similarity=0.104  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcC
Q psy3701         286 TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEES  335 (342)
Q Consensus       286 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  335 (342)
                      .....+.-....|++.-|.+....++..+|++..++...+.++.+++...
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            34445555556666666666666666666666666666666666655443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=89.20  E-value=11  Score=30.69  Aligned_cols=57  Identities=12%  Similarity=-0.076  Sum_probs=33.8

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHH
Q psy3701          37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA   97 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A   97 (342)
                      .+++-....+++++|+..|.+.+-..+..- +   +.-.+...+...++..|...|++..-
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~d-e---k~~nEqE~tvlel~~lyv~~g~~~~l   64 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKD-E---KTLNEQEATVLELFKLYVSKGDYCSL   64 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChh-h---hhhhHHHHHHHHHHHHHHhcCCcchH
Confidence            456667778889999988888541100000 0   00112345677888888888876543

>PF13041 PPR_2: PPR repeat family

Probab=88.82  E-value=2.7  Score=23.71  Aligned_cols=30  Identities=10%  Similarity=0.009  Sum_probs=18.0

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSK  209 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  209 (342)
                      ...|..+-..+.+.|++++|.+.|++..+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            344555666666666666666666666543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=88.72  E-value=11  Score=30.43  Aligned_cols=61  Identities=8%  Similarity=-0.041  Sum_probs=33.4

Q ss_pred             CcHHHHHHHHHHHHHhCChH-HHHHHHHHHhhcC------CCcHHHHHHhhhHHHhhccHHHHHHHHH
Q psy3701          76 DSAIAWYAVGCYYYLIGRSD-PARRFLGKATSLD------KLFLPAWLMYGHSFAVENEHDQAMAAYF  136 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~  136 (342)
                      .+......++.+......-+ +-.++.+++++..      -.++..+..+|..+...|++.+|...+-
T Consensus        47 ~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   47 VDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             -SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            34444456666655554322 2333444444432      2357788888888888888888877663

; PDB: 3LKU_E 2WPV_G.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=88.49  E-value=11  Score=30.16  Aligned_cols=61  Identities=13%  Similarity=0.104  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGYIQALTGDLDSAVNYFHKTM  311 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al  311 (342)
                      .+...+|..|...|++++|+++|+.+.......      ..+...+..|+...|+.+..+...-+.+
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            466678999999999999999999996554322      3566778888889999888777654443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=88.36  E-value=17  Score=31.90  Aligned_cols=29  Identities=3%  Similarity=-0.149  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLD  108 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  108 (342)
                      ....+|+.++..++|+-|...|+.+..-.
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df  238 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDF  238 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            45668999999999999999998877643

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG2063|consensus

Probab=88.23  E-value=25  Score=33.80  Aligned_cols=173  Identities=12%  Similarity=0.006  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcC----CCcHHHHHHhhhHHHhhccH--HHHHHHHHHHhccCCCCchH------
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLD----KLFLPAWLMYGHSFAVENEH--DQAMAAYFNAFNLFKGCHLP------  148 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~------  148 (342)
                      +..|+..|...|++++|++.+.+...-.    +.....+-..-..+...+..  +-..++-.-.+..+|....-      
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~  586 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED  586 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence            5667888888888888888888877633    33333333333333344433  44555555555555542110      


Q ss_pred             -----HH--HHHHHHhhhCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhc--------ChhHHHHH--HHHHHHhh
Q psy3701         149 -----AL--YVGLECGLTNNARLASKFFDLALSIAHE-DPFVIHEMGVIAYQNH--------NYTVAENC--FMEALSKV  210 (342)
Q Consensus       149 -----~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--------~~~~A~~~--~~~al~~~  210 (342)
                           -.  ....-+......+-++.+++.++..+.. +...+..+...|.+.=        +-+++.+.  .++....-
T Consensus       587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l  666 (877)
T KOG2063|consen  587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL  666 (877)
T ss_pred             hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence                 00  1222355667777788888888776654 3444555555444321        11222222  11111111


Q ss_pred             hhcCccccccchhhHHHHhhhhHHHHHHHhch---hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701         211 KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG---EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV  278 (342)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  278 (342)
                      +.+.                        .+..   ....+ ....|...+..+.++|+.++|+..|-..+.
T Consensus       667 ~~s~------------------------~Y~p~~~L~~~~-~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  667 ESSD------------------------LYDPQLLLERLN-GDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             hhhc------------------------ccCcchhhhhcc-chhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence            1110                        0000   01111 145778888888999999999988876654

>KOG0546|consensus

Probab=87.38  E-value=1.4  Score=36.51  Aligned_cols=108  Identities=14%  Similarity=-0.079  Sum_probs=75.0

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhhcCC---C----------------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC
Q psy3701          84 VGCYYYLIGRSDPARRFLGKATSLDK---L----------------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG  144 (342)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~a~~~~~---~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  144 (342)
                      .|.-.+..++++.|..-+.++...-.   .                -.....+++.+-...+.+..|+..-..++..++.
T Consensus       228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s  307 (372)
T KOG0546|consen  228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS  307 (372)
T ss_pred             cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence            45567777888887777776654211   0                0112344666667777777777777777777777


Q ss_pred             CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         145 CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      ...+++..+..+....++++|++.++.+....|.+..+...+..+-.
T Consensus       308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            78888888888888888888888888888888887776555544433

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=86.78  E-value=17  Score=30.30  Aligned_cols=152  Identities=11%  Similarity=0.024  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC--------------------------hHHHHHHHHHHhhcCC-CcHH
Q psy3701          61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR--------------------------SDPARRFLGKATSLDK-LFLP  113 (342)
Q Consensus        61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--------------------------~~~A~~~~~~a~~~~~-~~~~  113 (342)
                      .+++.+..-+...-|..++++-.++...++..+                          .+++...+.+++.... ....
T Consensus       213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq  292 (415)
T COG4941         213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ  292 (415)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence            677888888889999999988888777664321                          4567777777766532 2111


Q ss_pred             HHHHhhhHHH-----hhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh--CCCChHHHHHH
Q psy3701         114 AWLMYGHSFA-----VENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI--AHEDPFVIHEM  186 (342)
Q Consensus       114 ~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l  186 (342)
                      ..-.++.++.     ..-++..-..+|.-.....|+ +.+-.+.+.......-...++...+.....  -.+....+...
T Consensus       293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~R  371 (415)
T COG4941         293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAAR  371 (415)
T ss_pred             HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHH
Confidence            2222222222     223555555666666666665 556666777777666777777777766553  22344567788


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      |.++.+.|+.++|...|++++.+.++.
T Consensus       372 adlL~rLgr~~eAr~aydrAi~La~~~  398 (415)
T COG4941         372 ADLLARLGRVEEARAAYDRAIALARNA  398 (415)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence            999999999999999999999998776

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=86.77  E-value=1.3  Score=21.56  Aligned_cols=26  Identities=31%  Similarity=0.299  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701         253 LNNLGHVNRKLKKYEEALEFHKQALV  278 (342)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~al~  278 (342)
                      |..+-..|.+.|++++|.+.+++..+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            44555666666666666666666543

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2581|consensus

Probab=86.37  E-value=20  Score=30.74  Aligned_cols=147  Identities=17%  Similarity=0.050  Sum_probs=89.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc---
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL---  107 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---  107 (342)
                      +...+++..-......++.+|..+-+..+..  +....+ -..+--.+..|+.+..+|-..|+...-...+...+..   
T Consensus       125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~--i~~~nr-RtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL  201 (493)
T KOG2581|consen  125 EAYLYLLVLLFLIDQKEYKEADKISDALLAS--ISIQNR-RTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL  201 (493)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHhcch-hhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence            3334334444555678888888776664311  000000 0011123567788888888888876666666554432   


Q ss_pred             --CCCc-HHHHHHhhhHHHhhccHHHHHHHHHHHhccC--CCCc--hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh
Q psy3701         108 --DKLF-LPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCH--LPALYVGLECGLTNNARLASKFFDLALSIAHEDP  180 (342)
Q Consensus       108 --~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  180 (342)
                        +... .-....+-+.|...+.|+.|-....+..--.  .++.  ...+++|.+..-+++|..|.+++-+++...|.+.
T Consensus       202 rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  202 RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence              2221 2334556778888899999988877765221  1222  3345688888888899999999999998888743

>KOG1463|consensus

Probab=86.17  E-value=19  Score=30.14  Aligned_cols=101  Identities=17%  Similarity=0.094  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh
Q psy3701         184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL  263 (342)
Q Consensus       184 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  263 (342)
                      ..+..+|+..++|.+|+......++--....                              ..+...+++..-..+|...
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlD------------------------------DK~lLvev~llESK~y~~l  181 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLD------------------------------DKILLVEVHLLESKAYHAL  181 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc------------------------------cccceeeehhhhhHHHHHH
Confidence            4678889999999999988877665433221                              2233345666667788888


Q ss_pred             hhHHHHHHHHHHHHhhC-----CCch--HHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         264 KKYEEALEFHKQALVVA-----PMKA--STFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       264 g~~~~A~~~~~~al~~~-----~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      .+..+|...+..|-...     |...  ..-..-|..+..-.+|..|..+|-++.+-.
T Consensus       182 ~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf  239 (411)
T KOG1463|consen  182 RNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF  239 (411)
T ss_pred             hcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence            88888888887765432     2111  112233555666689999999999998743

>KOG4014|consensus

Probab=85.99  E-value=13  Score=28.07  Aligned_cols=161  Identities=16%  Similarity=0.052  Sum_probs=99.6

Q ss_pred             HHHHHHHhHHHHh-hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----hCChHHHHHHHHHHh
Q psy3701          32 SALLLLKGRVYEA-LENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYL-----IGRSDPARRFLGKAT  105 (342)
Q Consensus        32 ~~~~~~~g~~~~~-~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~  105 (342)
                      .+....+|..+.. +.+|++|...|..-             -.....+...+.+|..++.     .++...|++.+..+.
T Consensus        34 Pe~C~lLgdYlEgi~knF~~A~kv~K~n-------------Cden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC  100 (248)
T KOG4014|consen   34 PESCQLLGDYLEGIQKNFQAAVKVFKKN-------------CDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC  100 (248)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh
Confidence            3455667766654 56788888888773             2233456667777766653     357889999999887


Q ss_pred             hcCCCcHHHHHHhhhHHHhh-----c--cHHHHHHHHHHHhccCCCCchHHHHHHHHHh---------------------
Q psy3701         106 SLDKLFLPAWLMYGHSFAVE-----N--EHDQAMAAYFNAFNLFKGCHLPALYVGLECG---------------------  157 (342)
Q Consensus       106 ~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~---------------------  157 (342)
                      ..  +.+.+...+|.++..-     +  +.++|.+++.++-.+...  .+.+.+...+.                     
T Consensus       101 ~~--n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~--~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~  176 (248)
T KOG4014|consen  101 DA--NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG--EACFLLSTMYMGGKEKFKTNAPGEGKPLDRAE  176 (248)
T ss_pred             cc--CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc--hHHHHHHHHHhccchhhcccCCCCCCCcchhh
Confidence            74  4566777777666532     2  367899999988776543  33344333332                     


Q ss_pred             ---hhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh----cChhHHHHHHHHHHHhhh
Q psy3701         158 ---LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN----HNYTVAENCFMEALSKVK  211 (342)
Q Consensus       158 ---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~  211 (342)
                         ...+.+.|.++--++-++  +++.+.-++.+.|-.-    .+-++|..+-.++.++..
T Consensus       177 ~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~  235 (248)
T KOG4014|consen  177 LGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIME  235 (248)
T ss_pred             hhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHH
Confidence               334556666666666554  3555666666655431    345677777777766543

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=85.29  E-value=6.3  Score=30.16  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       265 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      ..+..++..++.+...| ++.++..++.++...|+.++|....+++..+.|.+.
T Consensus       126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~  178 (193)
T PF11846_consen  126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADE  178 (193)
T ss_pred             HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence            34555666677777777 678888999999999999999999999999999444

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=85.13  E-value=19  Score=29.35  Aligned_cols=164  Identities=9%  Similarity=-0.005  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHH--HHHHHHHHhCChHHHHHHHHHHhhc-CCC-----cHHHHHHhh
Q psy3701          50 LAADCYKGALLADLFKLAHELVDL--YPDSAIAWY--AVGCYYYLIGRSDPARRFLGKATSL-DKL-----FLPAWLMYG  119 (342)
Q Consensus        50 ~A~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~--~l~~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~~~~~~la  119 (342)
                      +|.+.+...+.++...-+-+.+..  +|.....|.  ..+..-......++-++-+.+.++. ..+     -.+++.++|
T Consensus        43 ka~e~l~~~i~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~a  122 (412)
T COG5187          43 KALEHLERLIIDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIA  122 (412)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence            366666666555443333333333  565444432  2333333334445555555444432 222     257899999


Q ss_pred             hHHHhhccHHHHHHHHHHHhccCCCC------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHH
Q psy3701         120 HSFAVENEHDQAMAAYFNAFNLFKGC------HLPALYVGLECGLTNNARLASKFFDLALSIAHEDP---FVIHEMGVIA  190 (342)
Q Consensus       120 ~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~  190 (342)
                      ..|.+.++.+.+.+...+.++..-..      ......+|.+|..+.-.++.++..+..++...+-.   ..-...|...
T Consensus       123 eyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~  202 (412)
T COG5187         123 EYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFK  202 (412)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHH
Confidence            99999999999999988877654321      12234467777777767777777777776554321   2233456666


Q ss_pred             HHhcChhHHHHHHHHHHHhhhhc
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      +...++.+|-..+...+......
T Consensus       203 m~~RnFkeAa~Ll~d~l~tF~S~  225 (412)
T COG5187         203 MMRRNFKEAAILLSDILPTFESS  225 (412)
T ss_pred             HHHHhhHHHHHHHHHHhcccccc
Confidence            77788899988888877655444

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.07  E-value=19  Score=29.20  Aligned_cols=68  Identities=19%  Similarity=0.056  Sum_probs=43.0

Q ss_pred             CCCChHHHHHHHHHHHHhhhHHHHHHHHHHH----------------HhhCCCchHHHHHHHHH-HHHhCChHHHHHHHH
Q psy3701         246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQA----------------LVVAPMKASTFCCIGYI-QALTGDLDSAVNYFH  308 (342)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------l~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~  308 (342)
                      +...+..+..+|..+.+.|++.+|..+|-..                .+-.|...+.+...+.+ |...|+...|...+.
T Consensus        86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~  165 (260)
T PF04190_consen   86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD  165 (260)
T ss_dssp             TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4445789999999999999999998777321                11234445555444433 566789998888776


Q ss_pred             HHHhc
Q psy3701         309 KTMAL  313 (342)
Q Consensus       309 ~al~~  313 (342)
                      .-.+.
T Consensus       166 ~f~~~  170 (260)
T PF04190_consen  166 TFTSK  170 (260)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

; PDB: 3LKU_E 2WPV_G.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=84.19  E-value=28  Score=30.51  Aligned_cols=163  Identities=14%  Similarity=-0.003  Sum_probs=86.2

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh-------HHHHHHHH
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGALLA----DLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS-------DPARRFLG  102 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-------~~A~~~~~  102 (342)
                      ..-.+|...+..++|+-|...|+....+    ++...          .+.+....|.+.+..+..       ++...+++
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~----------~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le  279 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKY----------LAGAQEMAALSLLMQGQSISAKIRKDEIEPYLE  279 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHH----------HHhHHHHHHHHHHhcCCCCccccccccHHHHHH
Confidence            3345899999999999999999986411    00000          122333344455544422       23334444


Q ss_pred             HHhhc-----------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc--CCCCc---h--HHHHHHHHH--hhhCCH
Q psy3701         103 KATSL-----------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL--FKGCH---L--PALYVGLEC--GLTNNA  162 (342)
Q Consensus       103 ~a~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~---~--~~~~l~~~~--~~~~~~  162 (342)
                      .++..           ......+....+.++...|.+.+|...+-+....  ..+..   .  .+-.++.++  ......
T Consensus       280 ~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~  359 (414)
T PF12739_consen  280 NAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRP  359 (414)
T ss_pred             HHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCC
Confidence            43321           1122345566677777888887777766665544  22211   1  112233333  111000


Q ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         163 RLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       163 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      .....-+++       ...-+..-|.-+...|+...|..+|.+++......
T Consensus       360 ~~~~~r~RK-------~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~~  403 (414)
T PF12739_consen  360 SPGLTRFRK-------YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEGK  403 (414)
T ss_pred             CccchhhHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence            000000000       11123345677889999999999999999887644

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG4279|consensus

Probab=83.88  E-value=38  Score=31.78  Aligned_cols=124  Identities=6%  Similarity=-0.027  Sum_probs=74.4

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HHHHHHhhhHHH---hhccHHHHHHHHHHHhccCC-CCc
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LPAWLMYGHSFA---VENEHDQAMAAYFNAFNLFK-GCH  146 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~-~~~  146 (342)
                      .+++-.++-..|....+|+.-++..+..-.+ |+.      ....+..+.++-   .-|+-++|+...-.+++... -.+
T Consensus       200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap  278 (1226)
T KOG4279|consen  200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP  278 (1226)
T ss_pred             CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence            4677777888888888888888777665443 321      111122222222   34677888888777777643 344


Q ss_pred             hHHHHHHHHHhh---------hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC-hhHHHHH
Q psy3701         147 LPALYVGLECGL---------TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN-YTVAENC  202 (342)
Q Consensus       147 ~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~  202 (342)
                      ..+...|++|..         .+..+.|+++|+++++..|.... -.+++.++...|+ ++...+.
T Consensus       279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~El  343 (1226)
T KOG4279|consen  279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLEL  343 (1226)
T ss_pred             ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHH
Confidence            555555666543         35677888888888888875432 2455555555553 3444433

>KOG4151|consensus

Probab=83.85  E-value=5.7  Score=36.78  Aligned_cols=110  Identities=17%  Similarity=0.107  Sum_probs=85.0

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH--H
Q psy3701         185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR--K  262 (342)
Q Consensus       185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~  262 (342)
                      .-|..++..+++..+.--|..++.+-|.+.                                ...+....+.+.+++  .
T Consensus        58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~--------------------------------~~~a~~~~~~~s~~m~~~  105 (748)
T KOG4151|consen   58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDH--------------------------------HVVATLRSNQASCYMQLG  105 (748)
T ss_pred             hhhhHHhhhhhhhccchhhhhhheeccccc--------------------------------hhhhhHHHHHHHHHhhcC
Confidence            345667778888888888888888888552                                222345556666655  4


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      .|++.+++.-..-++...|....++...+.+|...++.+-|++...-.....|.+..+...+.+
T Consensus       106 l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~e  169 (748)
T KOG4151|consen  106 LGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEE  169 (748)
T ss_pred             ccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence            5789999999999999999999999999999999999999999988888899998665553333

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=82.76  E-value=24  Score=28.63  Aligned_cols=139  Identities=13%  Similarity=0.037  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHH
Q psy3701         162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ  239 (342)
Q Consensus       162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (342)
                      .+.-+..+..+++.+|.+..+|...-.++..-  .++..-....++.++.++.+-     ..|..-..            
T Consensus        90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNy-----H~W~YR~~------------  152 (328)
T COG5536          90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNY-----HVWSYRRW------------  152 (328)
T ss_pred             hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccc-----ceeeeEee------------
Confidence            34445567777778888877777766665543  456666777777777777762     11110000            


Q ss_pred             hchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHH---HHHHHHhCC------hHHHHHHHHHH
Q psy3701         240 LGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI---GYIQALTGD------LDSAVNYFHKT  310 (342)
Q Consensus       240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l---~~~~~~~g~------~~~A~~~~~~a  310 (342)
                                  +.. -+.-...-..+..-.++-...+..++.+..+|...   -......|+      +++-+++.-.+
T Consensus       153 ------------vl~-~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~  219 (328)
T COG5536         153 ------------VLR-TIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDK  219 (328)
T ss_pred             ------------eee-cchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhh
Confidence                        000 01111112223333555556667777777777655   222223333      34455666666


Q ss_pred             HhcccCchhHHhHHHHHHHH
Q psy3701         311 MALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       311 l~~~p~~~~~~~~l~~~~~~  330 (342)
                      +-.+|++..++..+..+.+.
T Consensus       220 if~~p~~~S~w~y~r~~~~~  239 (328)
T COG5536         220 IFTDPDNQSVWGYLRGVSSE  239 (328)
T ss_pred             hhcCccccchhhHHHHHhcc
Confidence            77788888777766555443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.55  E-value=5.8  Score=28.54  Aligned_cols=51  Identities=12%  Similarity=-0.118  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH  128 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  128 (342)
                      .+.....+...+..|++.-|..+.+.++..+|++..+...++.++..+|.-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            455566677777788888888888888888888888887777777766653

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=82.36  E-value=3.4  Score=20.61  Aligned_cols=26  Identities=38%  Similarity=0.304  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701         253 LNNLGHVNRKLKKYEEALEFHKQALV  278 (342)
Q Consensus       253 ~~~l~~~~~~~g~~~~A~~~~~~al~  278 (342)
                      |..+-..|.+.|++++|.+.|.+..+
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34455556666666666666665543

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG0276|consensus

Probab=81.45  E-value=23  Score=32.12  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=20.9

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      ++..-|..||.+....+++..|.++|.++..
T Consensus       664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  664 NSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            4556677777777777777777777776543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=81.33  E-value=16  Score=25.98  Aligned_cols=54  Identities=9%  Similarity=-0.009  Sum_probs=37.1

Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      +...|+-++--+.+....+....++..+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus        96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            445666666666666666656677899999999999999999999999988764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4279|consensus

Probab=80.83  E-value=51  Score=31.06  Aligned_cols=102  Identities=9%  Similarity=-0.071  Sum_probs=70.8

Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------CchHHHHHHHHHhh---hCCHHHHHHHHHHHHhhC-CCCh
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------CHLPALYVGLECGL---TNNARLASKFFDLALSIA-HEDP  180 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~  180 (342)
                      .++.-.++-..|....+|+.-++..+..-.+ |+      .....+..+.++-+   -|+-++|+...-.+++.. |-.+
T Consensus       200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap  278 (1226)
T KOG4279|consen  200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP  278 (1226)
T ss_pred             CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence            3667777888899999999888877665444 32      12223333444333   478888998888877754 4456


Q ss_pred             HHHHHHHHHHHH---------hcChhHHHHHHHHHHHhhhhc
Q psy3701         181 FVIHEMGVIAYQ---------NHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       181 ~~~~~l~~~~~~---------~~~~~~A~~~~~~al~~~~~~  213 (342)
                      +.+...|++|-.         .+..+.|+.+|+++.+..|..
T Consensus       279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~  320 (1226)
T KOG4279|consen  279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE  320 (1226)
T ss_pred             ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence            777777877753         345578999999999998876

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=80.24  E-value=8.7  Score=32.97  Aligned_cols=43  Identities=14%  Similarity=0.013  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHH
Q psy3701          94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYF  136 (342)
Q Consensus        94 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  136 (342)
                      .-+|+..++.++..+|.+......+..+|...|-.+.|...|.
T Consensus       199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~  241 (365)
T PF09797_consen  199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE  241 (365)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3455555666666666666666666666666666666666654

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
3hym_B	330	Insights Into Anaphase Promoting Complex Tpr Subdom		2e-84
2xpi_A	597	Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1		1e-35
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-05
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		7e-05
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		8e-05

>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain Assembly From A Cdc26-Apc6 Structure Length = 330

Iteration: 1
 Score =  309 bits (791), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/280 (53%), Positives = 196/280 (70%), Gaps = 28/280 (10%)
Query: 62  DLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGH 120
           +LF L+H+LVDLYP + ++W+AVGCYY  +G +++ ARR+L KAT+L+K + PAW+ YGH
Sbjct: 74  ELFYLSHKLVDLYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133
Query: 121 SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
           SFAVE+EHDQA AAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA EDP
Sbjct: 134 SFAVESEHDQAXAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193
Query: 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
           FV HE+GV+A+QN  +  AE  F++AL K+K +G E+  DKWEPLLN             
Sbjct: 194 FVXHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN------------- 240
Query: 241 GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL 300
                         NLGHV RKLKKY EAL++H+QALV+ P  AST+  IGYI +L G+ 
Sbjct: 241 --------------NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNF 286
Query: 301 DSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
           ++AV+YFH  + L+RDD+F+ T L + IE  I +S  + G
Sbjct: 287 ENAVDYFHTALGLRRDDTFSVTXLGHCIEXYIGDSEAYIG 326

>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1 Length = 597

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 140/268 (52%), Gaps = 29/268 (10%)
Query: 63  LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSF 122
           L+ ++++LVD +P+ A+ W AVG YY  + +   ARR+  K++++D  F PAW+ + HSF
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF 417
Query: 123 AVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV 182
           A+E EHDQA++AY  A  LF+G HLP L++G++     N  LA+++   + ++   DP +
Sbjct: 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477
Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
           ++E+GV+A+   +   A N F  AL  VK                    K +   K    
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVK--------------------KTQSNEK---- 513
Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302
                 W     NLGH  RKLK Y+ A++   Q L+++   A+    I  +         
Sbjct: 514 -----PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568
Query: 303 AVNYFHKTMALKRDDSFATTMLSYVIEQ 330
           A+ + H+++A+  ++  A+ +L   +E+
Sbjct: 569 AITHLHESLAISPNEIMASDLLKRALEE 596

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
           NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L 
Sbjct: 48  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107
Query: 315 RDDSFATTMLS 325
            +++ A   L 
Sbjct: 108 PNNAEAKQNLG 118

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
           NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L 
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 315 RDDSFATTMLS 325
            +++ A   L 
Sbjct: 74  PNNAEAKQNLG 84

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
           NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L 
Sbjct: 48  NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 107
Query: 315 RDDSFATTMLS 325
            +++ A   L 
Sbjct: 108 PNNAEAKQNLG 118

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
           NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%)
Query: 71  VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQ 130
           ++  P+ A+AW  +GC +   G    A     KA +LD  FL A++  G+        D+
Sbjct: 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221
Query: 131 AMAAYFNAFNLFKG---CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG 187
           A+AAY  A +L       H     V  E GL +   LA   +  A+ +    P     + 
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLID---LAIDTYRRAIELQPHFPDAYCNLA 278
Query: 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI--- 244
               +  +   AE+C+  AL          +       LNNL +     +K+  G I   
Sbjct: 279 NALKEKGSVAEAEDCYNTALR---------LCPTHADSLNNLAN-----IKREQGNIEEA 324
Query: 245 ---------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG 291
                    +  ++    +NL  V ++  K +EAL  +K+A+ ++P  A  +  +G
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
           NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L
Sbjct: 8   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-68
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-65
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-14
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-10
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-10
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-04

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  216 bits (551), Expect = 4e-68
 Identities = 151/282 (53%), Positives = 200/282 (70%), Gaps = 28/282 (9%)

Query: 60  LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR-SDPARRFLGKATSLDKLFLPAWLMY 118
             +LF L+H+LVDLYP + ++W+AVGCYY ++G  ++ ARR+L KAT+L+K + PAW+ Y
Sbjct: 72  ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY 131

Query: 119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE 178
           GHSFAVE+EHDQAMAAYF A  L KGCHLP LY+GLE GLTNN++LA +FF  ALSIA E
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191

Query: 179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK 238
           DPFV+HE+GV+A+QN  +  AE  F++AL                           +K+K
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDAL---------------------------EKIK 224

Query: 239 QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTG 298
            +G E+  DKWEPLLNNLGHV RKLKKY EAL++H+QALV+ P  AST+  IGYI +L G
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284

Query: 299 DLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESPPFPG 340
           + ++AV+YFH  + L+RDD+F+ TML + IE  I +S  + G
Sbjct: 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 29/262 (11%), Positives = 64/262 (24%), Gaps = 41/262 (15%)

Query: 69  ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH 128
           E VD   ++     ++   +Y         +        D        ++  +    N+ 
Sbjct: 13  ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA 72

Query: 129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL---ASKFFDLALSIAHEDPFVIHE 185
           ++         +L+     P  +  + C           A ++   A ++          
Sbjct: 73  NELFYLSHKLVDLYP--SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA 130

Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII 245
            G        +  A   +  A                   L    H              
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQ-----------------LMKGCHLP------------ 161

Query: 246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN 305
                  +  +G         + A  F  QAL +AP        +G +    G+  +A  
Sbjct: 162 -------MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214

Query: 306 YFHKTMALKRDDSFATTMLSYV 327
           +F   +   +      T+  + 
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWE 236

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
            G V   L+  A A D ++ AL             L P +A  + A+G  + L+G  + A
Sbjct: 242 LGHVCRKLKKYAEALDYHRQAL------------VLIPQNASTYSAIGYIHSLMGNFENA 289

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
             +   A  L +    +  M GH   +     +A    
Sbjct: 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  215 bits (548), Expect = 4e-65
 Identities = 84/319 (26%), Positives = 143/319 (44%), Gaps = 51/319 (15%)

Query: 34  LLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELV 71
           LLL K                    L                         L+ ++++LV
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366

Query: 72  DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQA 131
           D +P+ A+ W AVG YY  + +   ARR+  K++++D  F PAW+ + HSFA+E EHDQA
Sbjct: 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426

Query: 132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191
           ++AY  A  LF+G HLP L++G++     N  LA+++   + ++   DP +++E+GV+A+
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486

Query: 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP 251
              +   A N F  AL  VK+                                    W  
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSN-----------------------------EKPWAA 517

Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
              NLGH  RKLK Y+ A++   Q L+++   A+    I  +         A+ + H+++
Sbjct: 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577

Query: 312 ALKRDDSFATTMLSYVIEQ 330
           A+  ++  A+ +L   +E+
Sbjct: 578 AISPNEIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 33/293 (11%), Positives = 76/293 (25%), Gaps = 81/293 (27%)

Query: 29  EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYY 88
           ++++++  L+G+VY  L N   A +CYK AL             +      A+       
Sbjct: 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEAL------------MVDAKCYEAFD------ 238

Query: 89  YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLP 148
                                      L+  H    + E D  +   ++ ++      L 
Sbjct: 239 --------------------------QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272

Query: 149 ALY-VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEAL 207
           +LY + L      +    ++ +  +++   +   ++       +    +        + L
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332

Query: 208 SKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE 267
                                                I      +         +  +  
Sbjct: 333 E------------------------------------IDPYNLDVYPLHLASLHESGEKN 356

Query: 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
           +        +   P KA T+  +G        +  A  YF K+  +      A
Sbjct: 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.5 bits (126), Expect = 9e-08
 Identities = 28/295 (9%), Positives = 66/295 (22%), Gaps = 29/295 (9%)

Query: 48  RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYY---------------LIG 92
           R    D            +  +++D+  +   A++    Y                 L  
Sbjct: 88  RLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN 147

Query: 93  RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152
           RS   R            +  A  + G +     +   A         +     +     
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM-CYLR 206

Query: 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
           G      +N   A + +  AL +   D         +   +      E   +  L+    
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263

Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL-------LNNLGHVNRKLKK 265
              +     +   L  L         +L                   L           +
Sbjct: 264 SKED---AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320

Query: 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
           + + L    + L + P     +         +G+ +      +  +    + +  
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 22/113 (19%), Positives = 37/113 (32%)

Query: 68  HELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE 127
             L  L  D+    YA+G   Y  G+ D A++       LD      +L  G        
Sbjct: 8   AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67

Query: 128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
           ++QA+ +Y     +         +         +   A   F  A ++A   P
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 15/66 (22%), Positives = 24/66 (36%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
              LG   + L  YE+AL+ +    ++   +              GDLD A + F+   A
Sbjct: 55  FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114

Query: 313 LKRDDS 318
           L     
Sbjct: 115 LAAAQP 120

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 10/68 (14%), Positives = 26/68 (38%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
           L  LG    +  K+++A +  +   ++    A  F  +G  +   G  + A+  +     
Sbjct: 21  LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80

Query: 313 LKRDDSFA 320
           +  ++   
Sbjct: 81  MDINEPRF 88

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 71.0 bits (175), Expect = 6e-14
 Identities = 43/297 (14%), Positives = 92/297 (30%), Gaps = 36/297 (12%)

Query: 35  LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
           LLL   ++        +A     A+               P  A A+  +G  Y   G+ 
Sbjct: 36  LLLLSSIHFQCRRLDRSAHFSTLAI------------KQNPLLAEAYSNLGNVYKERGQL 83

Query: 95  DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
             A      A  L   F+  ++    +     + + A+ AY +A        L  +   L
Sbjct: 84  QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP--DLYCVRSDL 141

Query: 155 ECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
              L    RL  A   +  A+            +G +        +A + F +A++    
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---- 197

Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGG---------EIIADKWEPLLNNLGHVNRKL 263
                +   +     NLG     + +              +  +       NL  V  + 
Sbjct: 198 -----LDPNFLDAYINLG-NVLKEARIFDRAVAAYLRALSLSPNHAVVH-GNLACVYYEQ 250

Query: 264 KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
              + A++ +++A+ + P     +C +       G +  A + ++  + L    + +
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 46/281 (16%), Positives = 102/281 (36%), Gaps = 22/281 (7%)

Query: 50  LAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109
           LA   Y+        +   +L    PD+      +   ++   R D +  F   A   + 
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASK 167
           L   A+   G+ +    +  +A+  Y +A  L         Y+ L   L     +  A +
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQ 122

Query: 168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN 227
            +  AL    +   V  ++G +         A+ C+++A+              +    +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE---------TQPNFAVAWS 173

Query: 228 NLGHKAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 279
           NLG    +   ++   I        +   +     NLG+V ++ + ++ A+  + +AL +
Sbjct: 174 NLG-CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232

Query: 280 APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
           +P  A     +  +    G +D A++ + + + L+     A
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 56/307 (18%), Positives = 103/307 (33%), Gaps = 40/307 (13%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
                 A  +   A   Y  AL               PD       +G     +GR + A
Sbjct: 107 LAAALVAAGDMEGAVQAYVSAL------------QYNPDLYCVRSDLGNLLKALGRLEEA 154

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
           +    KA      F  AW   G  F  + E   A+  +  A  L    +    Y+ L   
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNV 212

Query: 158 LTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
           L        A   +  ALS++     V   +  + Y+     +A + +  A+        
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE------- 265

Query: 216 EIIADKWEPLLNNLG--HKAEDKVKQLGGEIIAD-----KWEP----LLNNLGHVNRKLK 264
             +   +     NL    K +  V     E         +  P     LNNL ++ R+  
Sbjct: 266 --LQPHFPDAYCNLANALKEKGSVA----EAEDCYNTALRLCPTHADSLNNLANIKREQG 319

Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML 324
             EEA+  +++AL V P  A+    +  +    G L  A+ ++ + + +    + A + +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

Query: 325 SYVIEQL 331
              ++++
Sbjct: 380 GNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 44/293 (15%), Positives = 91/293 (31%), Gaps = 34/293 (11%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
            G VY+       A + Y+ AL             L PD    +  +       G  + A
Sbjct: 73  LGNVYKERGQLQEAIEHYRHAL------------RLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
            +    A   +          G+        ++A A Y  A       +    +  L C 
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP--NFAVAWSNLGCV 178

Query: 158 LTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
                 +  A   F+ A+++          +G +  +   +  A   ++ AL        
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-------- 230

Query: 216 EIIADKWEPLLNNLGHKAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRKLKKYE 267
            +  +       NL      +   +   I        +   +     NL +  ++     
Sbjct: 231 SLSPNHAVVH-GNLAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

Query: 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
           EA + +  AL + P  A +   +  I+   G+++ AV  + K + +  + + A
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 36/240 (15%)

Query: 81  WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN 140
              +    Y  G  + A R   +    +       L+           D++      A  
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 141 LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAE 200
                      +G         + A + +  AL +  +       +        +   A 
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260
             ++ AL                                            + ++LG++ 
Sbjct: 122 QAYVSALQ------------------------------------YNPDLYCVRSDLGNLL 145

Query: 261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
           + L + EEA   + +A+   P  A  +  +G +    G++  A+++F K + L  +   A
Sbjct: 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 45/304 (14%), Positives = 81/304 (26%), Gaps = 51/304 (16%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
           +G       +   A   ++ A+               P    AW  +G       +   A
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAV------------QQDPKHMEAWQYLGTTQAENEQELLA 117

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
              L +   L      A +    SF  E+   QA     +                    
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW------------------- 158

Query: 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217
           L      A                    +      +  +   +  F+ A+   +     I
Sbjct: 159 LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV---RLDPTSI 215

Query: 218 IADKWEPLLNNLG---------HKAEDKVKQ-LGGEIIADKWEPLLNNLGHVNRKLKKYE 267
             D        LG          KA D     L   +  + +  L N LG       + E
Sbjct: 216 DPDVQ----CGLGVLFNLSGEYDKAVDCFTAAL--SVRPNDYL-LWNKLGATLANGNQSE 268

Query: 268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327
           EA+  +++AL + P    +   +G      G    AV +F + + ++R           +
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328

Query: 328 IEQL 331
            E +
Sbjct: 329 SENI 332

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 47/295 (15%), Positives = 86/295 (29%), Gaps = 31/295 (10%)

Query: 22  WFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAW 81
           ++ +LQ+E++              +   L +  Y        F+  + L D         
Sbjct: 16  FWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQ---FEEENPLRD-----HPQP 67

Query: 82  YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
           +  G      G    A      A   D   + AW   G + A   +   A++A      L
Sbjct: 68  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 127

Query: 142 FKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVA 199
            K  +  AL   L    TN +    A +     L                          
Sbjct: 128 -KPDNQTALM-ALAVSFTNESLQRQACEILRDWLRYTPAYA--------HLVTPAEEGAG 177

Query: 200 ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259
                 +   +  L  + +  + + L       A   V+     I  D        LG +
Sbjct: 178 GAGLGPSKRILGSLLSDSLFLEVKELFL----AA---VRLDPTSIDPDVQ----CGLGVL 226

Query: 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
                +Y++A++    AL V P     +  +G   A     + AV  + + + L+
Sbjct: 227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 37/280 (13%), Positives = 63/280 (22%), Gaps = 64/280 (22%)

Query: 37  LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDP 96
             G      E   LA    +  L            +L PD+  A  A+   +        
Sbjct: 103 YLGTTQAENEQELLAISALRRCL------------ELKPDNQTALMALAVSFTNESLQRQ 150

Query: 97  ARRFLGKATSLDKLFLPAWLMYGHSFAVEN---------------EHDQAMAAYFNAFNL 141
           A   L         +                                 +    +  A  L
Sbjct: 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210

Query: 142 FKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVA 199
                 P +  GL      +     A   F  ALS+   D  + +++G      +    A
Sbjct: 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270

Query: 200 ENCFMEALSKVKQLGGEIIADKWEPLLNNLG----------------------HKAEDKV 237
              +  AL        E+          NLG                       +     
Sbjct: 271 VAAYRRAL--------ELQPGYIRSR-YNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321

Query: 238 KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL 277
           +  GG +  + W    + L      L + +       + L
Sbjct: 322 RGEGGAMSENIW----STLRLALSMLGQSDAYGAADARDL 357

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 57/306 (18%), Positives = 104/306 (33%), Gaps = 57/306 (18%)

Query: 39  GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
           G  Y  L +   A   +K  L      LA  + D     A +   +G    ++GR D A 
Sbjct: 93  GNAYFYLGDYNKAMQYHKHDL-----TLAKSMNDR-LGEAKSSGNLGNTLKVMGRFDEAA 146

Query: 99  RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLEC 156
               +  +L +              + +   +   A +N  N++  KG HL     G   
Sbjct: 147 ICCERHLTLAR-------------QLGDRLSEG-RALYNLGNVYHAKGKHLGQRNPGKFG 192

Query: 157 GLTNNA-RLASKFFDLALSIAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEALSK 209
                A   A +F+   L +  +  D          +G   Y   ++  A     E L  
Sbjct: 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252

Query: 210 VKQLG---GEIIADKWEPLLNNLGH---------KAEDKVKQ-LG-GEIIADKWE--PLL 253
            ++ G    E  A       +NLG+          A +  K+ L     + ++       
Sbjct: 253 AREFGDRAAERRA------NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSC 306

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYF 307
            +LG+    L ++  A+E+H + L +A        +A     +G   +  G  + A+ Y 
Sbjct: 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366

Query: 308 HKTMAL 313
            + + L
Sbjct: 367 EQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 51/245 (20%)

Query: 119 GHSFAVENEHDQAMAAYFNAFNLFKGCH--LPALY--VGLECGLTNNARLASKFFDLALS 174
           G       +    +A +  A          L A+Y  +G       +   A ++    L+
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114

Query: 175 IAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI-IADKWEPLLN 227
           +A    D          +G        +  A  C    L+  +QLG  +         L 
Sbjct: 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR----ALY 170

Query: 228 NLGHKAEDKVKQLGGEIIADKWEPL------------------------------LNNLG 257
           NLG+    K K LG        + +                                NLG
Sbjct: 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLG 230

Query: 258 HVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
           +    L  ++ A+E H++ L +A        +      +G      G  + A  ++ +T+
Sbjct: 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290

Query: 312 ALKRD 316
           AL  +
Sbjct: 291 ALAVE 295

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 24/181 (13%), Positives = 46/181 (25%), Gaps = 44/181 (24%)

Query: 147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDP------FVIHEMGVIAYQNHNYTVAE 200
           L A    +      +    +   D                  +   G       +     
Sbjct: 9   LSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68

Query: 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260
             F  A+                          ED         ++     + + LG+  
Sbjct: 69  AFFQAAIQA----------------------GTEDL------RTLSA----IYSQLGNAY 96

Query: 261 RKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
             L  Y +A+++HK  L +A        +A +   +G    + G  D A     + + L 
Sbjct: 97  FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156

Query: 315 R 315
           R
Sbjct: 157 R 157

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 51/274 (18%), Positives = 86/274 (31%), Gaps = 65/274 (23%)

Query: 39  GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
           G   + +     AA C +  L      LA +L D       A Y +G  Y+  G+    R
Sbjct: 133 GNTLKVMGRFDEAAICCERHL-----TLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQR 186

Query: 99  RFLGKATSLDKLFLPAWLMYGHSFA----VENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
                   + +    A   Y  +      + +   Q  A      NL           G 
Sbjct: 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA--CG--NL-----------GN 231

Query: 155 ECGLTNNARLASKFFDLALSIAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEALS 208
              L  + + A +     L IA E  D          +G        +  A   +   L+
Sbjct: 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291

Query: 209 KVKQLG---GEIIADKWEPLLNNLGH---------KAEDK-------VKQLG---GEIIA 246
              +LG    E  +        +LG+          A +         ++LG   GE  A
Sbjct: 292 LAVELGEREVEAQS------CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345

Query: 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280
                   +LG+ +  +  +E AL++ +Q L +A
Sbjct: 346 ------CWSLGNAHSAIGGHERALKYAEQHLQLA 373

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 46/313 (14%), Positives = 87/313 (27%), Gaps = 63/313 (20%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
           +G     L N A AA  ++                  P+   AW ++G       +   A
Sbjct: 27  EGLSMLKLANLAEAALAFEAV------------CQAAPEREEAWRSLGLTQAENEKDGLA 74

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---FKGCHLPALYVGL 154
              L  A  LD   +        S   E+  + A+A+          ++      L   +
Sbjct: 75  IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV 134

Query: 155 ECGLTNNARL------------ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENC 202
           +    N                       AL +   D  +   +GV+   ++NY  A   
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194

Query: 203 FMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK 262
              A+        E+  D  +                            L N LG     
Sbjct: 195 LRRAV--------ELRPDDAQ----------------------------LWNKLGATLAN 218

Query: 263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT 322
             + +EAL+ + +AL + P        +    +     D A     + + ++   +  T 
Sbjct: 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278

Query: 323 MLSYVIEQLIEES 335
             S    + + + 
Sbjct: 279 EASREATRSMWDF 291

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 33/246 (13%), Positives = 58/246 (23%), Gaps = 55/246 (22%)

Query: 75  PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
                     G     +     A                AW   G + A   +   A+ A
Sbjct: 18  YMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIA 77

Query: 135 YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH 194
                                              + A  +  +D  V   + V     H
Sbjct: 78  L----------------------------------NHARMLDPKDIAVHAALAVSHTNEH 103

Query: 195 NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254
           N   A       L             ++E L +               +   D  +  + 
Sbjct: 104 NANAALASLRAWLL---------SQPQYEQLGSVNL------------QADVDIDDLNVQ 142

Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
           +         +Y E       AL + P  A     +G +  L+ + DSA     + + L+
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202

Query: 315 RDDSFA 320
            DD+  
Sbjct: 203 PDDAQL 208

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 20/113 (17%), Positives = 41/113 (36%)

Query: 69  ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH 128
           ++  +  D     Y+    +Y  GR + A  F       D   +   +     + ++ + 
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPF 181
            QA   Y  AF L K  + P  + G           A + F+L +  ++++  
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 8/68 (11%), Positives = 22/68 (32%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
           +  L  + +  +++++A + +  A  +     +     G  Q        A   F   + 
Sbjct: 73  IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132

Query: 313 LKRDDSFA 320
              D+   
Sbjct: 133 HSNDEKLK 140

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 9/68 (13%), Positives = 21/68 (30%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
           + +  +      + EEA  F +   +           +  I  +      A + +    A
Sbjct: 39  IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98

Query: 313 LKRDDSFA 320
           L ++D   
Sbjct: 99  LGKNDYTP 106

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 61.9 bits (150), Expect = 7e-12
 Identities = 17/113 (15%), Positives = 31/113 (27%)

Query: 68  HELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE 127
             L ++  D+    Y++    Y  G  + A         LD      +L  G       +
Sbjct: 11  AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70

Query: 128 HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
           +D A+ +Y     +         +             A     LA  +    P
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 2/100 (2%)

Query: 42  YEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFL 101
            E L + A     Y+     D   +   L  L    +  +  +G     +G+ D A    
Sbjct: 21  LEQLYSLAFNQ--YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78

Query: 102 GKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
                +D                  E  +A +  F A  L
Sbjct: 79  SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 9/66 (13%), Positives = 20/66 (30%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
              LG   + + +Y+ A+  +    V+   +              G+L  A +       
Sbjct: 58  FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117

Query: 313 LKRDDS 318
           L  +  
Sbjct: 118 LIANXP 123

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 46/309 (14%), Positives = 98/309 (31%), Gaps = 30/309 (9%)

Query: 37  LKGRVYEALENRALAADCYKGAL--LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
           L      + E+   A + +  A     +     +E   L    AI+    G + +L    
Sbjct: 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253

Query: 95  DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
             A   + KA  L      +++      A  N+  +    +  A  L         + G 
Sbjct: 254 LGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312

Query: 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214
              +  N   A K FD A  +  E+ F   ++  +AY+ + +   E  F EA        
Sbjct: 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR------ 366

Query: 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRK---- 262
                 +   + N    +           +        + +K + +   +  +  K    
Sbjct: 367 ---KFPEAPEVPNFFA-EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422

Query: 263 -----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317
                ++ + EA    ++A  + P        +  ++    D+D A+  F ++  L R  
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482

Query: 318 SFATTMLSY 326
                 +++
Sbjct: 483 EEKLQAITF 491

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 39/314 (12%), Positives = 83/314 (26%), Gaps = 49/314 (15%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
               Y ++ +     +    AL            +L PD +            +G+   A
Sbjct: 45  LSACYVSVGDLKKVVEMSTKAL------------ELKPDYSKVLLRRASANEGLGKFADA 92

Query: 98  RRFLGKATSLDKL---FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF------------ 142
              L   +         +   L    +    ++  +       A                
Sbjct: 93  MFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152

Query: 143 -KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN-----Y 196
            K  +LP++             L    +D +     E    +  +   + ++++     +
Sbjct: 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212

Query: 197 TVAENCFMEALSKVKQLG--GEIIADKWEPL---LNNLGHKAE-----DKVKQLGGEIIA 246
           T A   F E L K  +     E +A   E                    K  +L   + +
Sbjct: 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS 272

Query: 247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNY 306
                    +  +        E   +  +AL +    +S +   G +  +  + D A   
Sbjct: 273 ------YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKD 326

Query: 307 FHKTMALKRDDSFA 320
           F K   L  ++ F 
Sbjct: 327 FDKAKELDPENIFP 340

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 38/308 (12%)

Query: 43  EALENRALAAD---CYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARR 99
            AL+++         Y  A+    +  A   ++L  D  + +  +   Y  +G       
Sbjct: 7   LALKDKGNQFFRNKKYDDAI--KYYNWA---LELKED-PVFYSNLSACYVSVGDLKKVVE 60

Query: 100 FLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159
              KA  L   +    L    +     +   AM    +  +L    +  ++   LE  L 
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLN 119

Query: 160 ----NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
               +  +      D A +   E      +      +N     +   F            
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 216 EIIADKWEP----LLNNLGHKAEDKVKQLGG---EIIADKWEPL---------------- 252
              +++ +      L+NL  ++ +   +      +      E L                
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
           L + G           A E  K+A+ + P + +++  +  I A   D     NYF K + 
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALK 298

Query: 313 LKRDDSFA 320
           L  ++S  
Sbjct: 299 LDSNNSSV 306

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 39/285 (13%), Positives = 79/285 (27%), Gaps = 41/285 (14%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWY-AVGCYYYLIGRSDP 96
               +  +    L    Y  +  AD  +L + L +LY  S  ++  A   +       + 
Sbjct: 163 SMASFFGIFKPELTFANYDESNEADK-ELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221

Query: 97  ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY-VGLE 155
                 +   L +    +    G    ++N+   A      A  LF    + +   + L 
Sbjct: 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALI 279

Query: 156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
               N++     +FD AL +   +  V +  G + +   NY  A   F +A         
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE------- 332

Query: 216 EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ 275
                                        +  +       L  +  +  K+++      +
Sbjct: 333 -----------------------------LDPENIFPYIQLACLAYRENKFDDCETLFSE 363

Query: 276 ALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
           A    P           I     D D A+  +   + L+      
Sbjct: 364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 27/299 (9%), Positives = 74/299 (24%), Gaps = 48/299 (16%)

Query: 34  LLLLKGRVYEALENRALAADCYKGAL-LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG 92
            +L +    +A+            A                     +        ++ I 
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171

Query: 93  RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152
           + +       ++   DK  +               +D+A  ++  A  LF+         
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSP--ESYDKADESFTKAARLFEE-------- 221

Query: 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
                            +    +  +    +   G+  +  ++   A     +A+     
Sbjct: 222 ------------QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE---- 265

Query: 213 LGGEIIADKWEPLLN------NLGHKAE-----DKVKQLGGEIIADKWEPLLNNLGHVNR 261
                +  +    +       +     E     DK  +L     +  +     + G +N 
Sbjct: 266 -----LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-SSVY----YHRGQMNF 315

Query: 262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
            L+ Y++A +   +A  + P     +  +  +       D     F +      +    
Sbjct: 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 36/264 (13%), Positives = 65/264 (24%), Gaps = 69/264 (26%)

Query: 72  DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQA 131
           +     +     +   Y        A   +  A   D     AWL+    +     +D+A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY 191
             ++                                    ALSI  +   + +  G    
Sbjct: 62  QESF----------------------------------RQALSIKPDSAEINNNYGWFLC 87

Query: 192 QNHN-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE 250
              N    +   F +AL                       + A                 
Sbjct: 88  GRLNRPAESMAYFDKAL---------------ADPTYPTPYIA----------------- 115

Query: 251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310
               N G  + K  ++  A  + K++L   P     F  +   + L G L  A  YF K 
Sbjct: 116 --NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173

Query: 311 MALKRDDSFATTMLSYVIEQLIEE 334
            +          +L + I + +  
Sbjct: 174 QSRVEVLQADDLLLGWKIAKALGN 197

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 21/180 (11%)

Query: 39  GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
              Y   ++   A    + AL +D            P + +AW      Y  +  +D A+
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSD------------PKNELAWLVRAEIYQYLKVNDKAQ 62

Query: 99  RFLGKATSLDKLFLPAWLMYGHSFAVE-NEHDQAMAAYFNAF-NLFKGCHLPALY----V 152
               +A S+          YG       N   ++MA +  A  +        A       
Sbjct: 63  ESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122

Query: 153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
             + G    A         +L+   + P    E+            A+  F +  S+V+ 
Sbjct: 123 SAKQGQFGLAEAY---LKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%)

Query: 72  DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQA 131
             YP   IA    G      G+   A  +L ++ +    F PA+     +  +  +   A
Sbjct: 107 PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166

Query: 132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL 173
              +    +  +      L +G +         A+  ++  L
Sbjct: 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 29/156 (18%)

Query: 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLG---------H 231
             +G +      +  A   F     + ++ G    E  A      L+ +G          
Sbjct: 30  FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRA------LHQVGMVERMAGNWD 83

Query: 232 KAEDKVKQ---LGGEIIADKWE--PLLNNLGHVNRKLKKYEEALEFHKQALVVA------ 280
            A     +   L   +  D          +  V         A + ++++LV A      
Sbjct: 84  AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143

Query: 281 PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316
              A  F  +G +     +L  A  ++ +   +  +
Sbjct: 144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 55/314 (17%), Positives = 103/314 (32%), Gaps = 64/314 (20%)

Query: 39  GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
           G  Y  L + A A + +   L      LA  + D     A A   +G    ++G  D A 
Sbjct: 50  GNAYFYLHDYAKALEYHHHDL-----TLARTIGD-QLGEAKASGNLGNTLKVLGNFDEAI 103

Query: 99  RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLEC 156
               +   + +              + ++  +A  A +N  N++  KG            
Sbjct: 104 VCCQRHLDISR-------------ELNDKVGEA-RALYNLGNVYHAKGKSFGCPGPQDTG 149

Query: 157 GLTNNARL----ASKFFDLALSIAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEA 206
               + R     A   ++  LS+     D          +G   Y   N+  A     + 
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 207 LSKVKQLGGEI-IADKWEPLLNNLG---------HKAEDKVKQ-------LGGE-IIADK 248
           L   K+ G +           +NLG           A +  K+       L    + A  
Sbjct: 210 LLIAKEFGDKAAERR----AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ- 264

Query: 249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDS 302
                 +LG+    L+ YE+A+++H + L +A        +      +G      G+ D 
Sbjct: 265 ---SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321

Query: 303 AVNYFHKTMALKRD 316
           A+++  K + + R+
Sbjct: 322 AMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA----PMKASTFCCIGYIQALTGDLDSAVNYFH 308
           L   G    K       + F + A+ V        ++ +  +G       D   A+ Y H
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67

Query: 309 KTMALKR 315
             + L R
Sbjct: 68  HDLTLAR 74

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 40/161 (24%)

Query: 165 ASKFFDLALSIAHEDPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220
              FF+ A+ +  ED   +     ++G   +  H+Y  A       L+  + +G +    
Sbjct: 24  GVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---- 79

Query: 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280
                                    A        NLG+  + L  ++EA+   ++ L ++
Sbjct: 80  ----------------------LGEAK----ASGNLGNTLKVLGNFDEAIVCCQRHLDIS 113

Query: 281 ------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR 315
                   +A     +G +    G               + 
Sbjct: 114 RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED 154

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 37/257 (14%), Positives = 75/257 (29%), Gaps = 60/257 (23%)

Query: 73  LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM 132
              ++  A+  +G  Y   G ++ A+  L KA  +D     A       F  E E   A 
Sbjct: 32  GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLAD 91

Query: 133 AAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192
             Y                                    AL+    +  V++  G   Y+
Sbjct: 92  EEY----------------------------------RKALASDSRNARVLNNYGGFLYE 117

Query: 193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG---------HKAEDKVKQLGGE 243
              Y  A    +EA          +  ++      NLG          +A++  ++    
Sbjct: 118 QKRYEEAYQRLLEASQDT------LYPERSRVF-ENLGLVSLQMKKPAQAKEYFEK---- 166

Query: 244 IIADKWEP----LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD 299
             + +       +   +  +  K ++Y  A +++          A +      +  +  D
Sbjct: 167 --SLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED 224

Query: 300 LDSAVNYFHKTMALKRD 316
            D+A +Y  +   L   
Sbjct: 225 RDTAASYGLQLKRLYPG 241

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 11/67 (16%), Positives = 23/67 (34%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
             LG    +    E+A    ++AL + P  A     +  +     +   A   + K +A 
Sbjct: 41  IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100

Query: 314 KRDDSFA 320
              ++  
Sbjct: 101 DSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 20/159 (12%)

Query: 172 ALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH 231
                 E      ++G+   Q  N   A+    +AL          I          L  
Sbjct: 29  TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE---------IDPSSADAHAALAV 79

Query: 232 KAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--P 281
                  +                +   +LNN G    + K+YEEA +   +A      P
Sbjct: 80  -VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP 138

Query: 282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
            ++  F  +G +         A  YF K++ L R+    
Sbjct: 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 56/314 (17%), Positives = 104/314 (33%), Gaps = 64/314 (20%)

Query: 39  GRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
           G  Y  L + A A + +   L      LA  + D     A A   +G    ++G  D A 
Sbjct: 54  GNAYFYLHDYAKALEYHHHDL-----TLARTIGDQ-LGEAKASGNLGNTLKVLGNFDEAI 107

Query: 99  RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--KGCHLPALYVGLEC 156
               +   + +              + ++  +A  A +N  N++  KG            
Sbjct: 108 VCCQRHLDISR-------------ELNDKVGEA-RALYNLGNVYHAKGKSFGCPGPQDVG 153

Query: 157 GLTNNARL----ASKFFDLALSIAHE--DPFVI----HEMGVIAYQNHNYTVAENCFMEA 206
                 R     A  F++  LS+     D          +G   Y   N+  A     + 
Sbjct: 154 EFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213

Query: 207 LSKVKQLGGEI-IADKWEPLLNNLGH---------KAEDKVKQ-------LGGE-IIADK 248
           L   K+ G +           +NLG+          A +  K+       L    + A  
Sbjct: 214 LLIAKEFGDKAAERR----AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ- 268

Query: 249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDS 302
                 +LG+    L+ YE+A+++H + L +A        +      +G      G+ D 
Sbjct: 269 ---SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325

Query: 303 AVNYFHKTMALKRD 316
           A+++  K + + R+
Sbjct: 326 AMHFAEKHLEISRE 339

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNY 306
            + LG+    L  Y +ALE+H   L +A        +A     +G    + G+ D A+  
Sbjct: 50  YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC 109

Query: 307 FHKTMALKR 315
             + + + R
Sbjct: 110 CQRHLDISR 118

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA----PMKASTFCCIGYIQALTGDLDSAVNYFH 308
           L   G    K       + F + A+ V        ++ +  +G       D   A+ Y H
Sbjct: 12  LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71

Query: 309 KTMALKR 315
             + L R
Sbjct: 72  HDLTLAR 78

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 40/172 (23%)

Query: 165 ASKFFDLALSIAHEDPFVI----HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD 220
              FF+ A+ +  ED   +     ++G   +  H+Y  A       L+  + +G +    
Sbjct: 28  GVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ---- 83

Query: 221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA 280
                                    A        NLG+  + L  ++EA+   ++ L ++
Sbjct: 84  ----------------------LGEAK----ASGNLGNTLKVLGNFDEAIVCCQRHLDIS 117

Query: 281 ------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326
                   +A     +G +    G               +         + +
Sbjct: 118 RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 32/296 (10%), Positives = 67/296 (22%), Gaps = 40/296 (13%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
                +ALE           A              L P+  +A  + G     +      
Sbjct: 146 HDGGKQALETVQALLPVLCQAH------------GLTPEQVVAIASNGGGKQALETVQRL 193

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
              L +A  L    + A    G          + +     A  L     + A+      G
Sbjct: 194 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TPQQVVAIA---SNG 249

Query: 158 LTNNA----RLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL 213
               A    +        A  +  +    I                     +A       
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH------ 303

Query: 214 GGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL---------LNNLGHVNRKLK 264
              +   +   + +N G K      +    ++    +           + +     + L+
Sbjct: 304 --GLTPQQVVAIASNGGGKQA---LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358

Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
             +  L    QA  + P +       G  +     +   +    +   L  +   A
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 27/296 (9%), Positives = 62/296 (20%), Gaps = 34/296 (11%)

Query: 35  LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
           +       +ALE           A              L P   +A  +       +   
Sbjct: 75  IASHDGGKQALETVQRLLPVLCQAH------------GLTPQQVVAIASHDGGKQALETV 122

Query: 95  DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
                 L +A  L    + A   +             +     A  L             
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT--PEQVVAIASN 180

Query: 155 ECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
             G      +         A  +  +    I   G                 +A      
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG---- 236

Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI--------IADKWEPLLNNLGHVNRKLK 264
                +  +    + + G   +  ++ +   +        +  +    + +     + L+
Sbjct: 237 -----LTPQQVVAIASNG-GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290

Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
             +  L    QA  + P +       G  +     +   +    +   L      A
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 27/272 (9%), Positives = 66/272 (24%), Gaps = 20/272 (7%)

Query: 58  ALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM 117
           A+ A    L    ++L P+  +A  +       +         L +A  L    + A   
Sbjct: 52  AVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 111

Query: 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV-GLECGLTNNARLASKFFDLALSIA 176
           +           + +     A  L     + A+             +        A  + 
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGL-TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170

Query: 177 HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK 236
            E    I   G                 +A           +  +    + + G   +  
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHG---------LTPQQVVAIASNGG-GKQA 220

Query: 237 VKQLGGEI--------IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFC 288
           ++ +   +        +  +    + + G   + L+  +  L    QA  + P +     
Sbjct: 221 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 280

Query: 289 CIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
                +     +   +    +   L      A
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 29/296 (9%), Positives = 64/296 (21%), Gaps = 34/296 (11%)

Query: 35  LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
           +       +ALE           A              L P+  +A  +       +   
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAH------------GLTPEQVVAIASHDGGKQALETV 156

Query: 95  DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
                 L +A  L    + A    G          + +     A  L             
Sbjct: 157 QALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASN 214

Query: 155 ECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
             G      +         A  +  +    I   G                 +A      
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH----- 269

Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII----ADKWEP----LLNNLGHVNRKLK 264
               +   +    + +     +  ++ +   +     A    P     + + G   + L+
Sbjct: 270 ---GLTPQQVV-AIASNS-GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
             +  L    QA  + P +          +     +   +    +   L  +   A
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 31/289 (10%), Positives = 55/289 (19%), Gaps = 66/289 (22%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
            G   +ALE           A              L P   +A  +       +      
Sbjct: 248 NGGGKQALETVQRLLPVLCQAH------------GLTPQQVVAIASNSGGKQALETVQRL 295

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---------FKGCHLP 148
              L +A  L    + A    G          + +     A  L                
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 355

Query: 149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
           AL            +        A  +  E    I   G                 +A  
Sbjct: 356 AL---------ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406

Query: 209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE 268
                                    E                    +     + L+  + 
Sbjct: 407 ----------------------LTPEQ----------VVAI----ASHDGGKQALETVQR 430

Query: 269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317
            L    QA  + P +       G  +     + + ++     +A   +D
Sbjct: 431 LLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 30/294 (10%), Positives = 66/294 (22%), Gaps = 36/294 (12%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
            G   +ALE           A              L P   +A  + G     +      
Sbjct: 180 NGGGKQALETVQRLLPVLCQAH------------GLTPQQVVAIASNGGGKQALETVQRL 227

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
              L +A  L    + A    G          + +     A  L     + A+      G
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TPQQVVAIA-SNSGG 285

Query: 158 LTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
                 +         A  +  +    I   G                 +A         
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG------- 338

Query: 216 EIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL---------LNNLGHVNRKLKKY 266
             +  +    + +     +  ++ +   ++    +           + + G   + L+  
Sbjct: 339 --LTPQQVVAIASHD-GGKQALETVQ-RLLPVLCQAHGLTPEQVVAIASNGGGKQALETV 394

Query: 267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
           +  L    QA  + P +          +     +   +    +   L      A
Sbjct: 395 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 30/213 (14%), Positives = 46/213 (21%), Gaps = 39/213 (18%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
            G   +ALE           A              L P   +A  +       +      
Sbjct: 316 NGGGKQALETVQRLLPVLCQAH------------GLTPQQVVAIASHDGGKQALETVQRL 363

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF---------KGCHLP 148
              L +A  L    + A    G          + +     A  L                
Sbjct: 364 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQ 423

Query: 149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
           AL            +        A  +  +    I   G       +     +    AL 
Sbjct: 424 AL---------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPAL- 473

Query: 209 KVKQLGGEIIADKWEPLLNNLG-HKAEDKVKQL 240
                    + +     L  LG   A D VK+L
Sbjct: 474 -------AALTNDHLVALACLGGRPALDAVKKL 499

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 46/312 (14%), Positives = 93/312 (29%), Gaps = 37/312 (11%)

Query: 27  QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGC 86
           Q +  +  L  +G  +   +N   A   Y+ A+            +L P+  + +  +  
Sbjct: 20  QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI------------ELDPNEPVFYSNISA 67

Query: 87  YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH 146
            Y   G  +    F  KA  +      A L    +         AM    +  +L     
Sbjct: 68  CYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSLNGDFD 126

Query: 147 LPALYVGLECGLTNNAR-----LASKFFDLALSIAHEDPFVIHEMGVIA--------YQN 193
             ++   LE  L   A        SK       +   +  +    G+            +
Sbjct: 127 GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186

Query: 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ-LGGEIIADKWEP- 251
            NY  A     +AL ++         D+   + N+L  K+ D     L    + D     
Sbjct: 187 SNYDTAYALLSDALQRLYSA-----TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241

Query: 252 ---LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFH 308
               L   G  +       +A    ++++ + P   +++  +    A   +      +F 
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQ 300

Query: 309 KTMALKRDDSFA 320
           K + L  +    
Sbjct: 301 KAVDLNPEYPPT 312

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 40/294 (13%), Positives = 88/294 (29%), Gaps = 37/294 (12%)

Query: 35  LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
           L   G  +    N   A    + ++            +L+P    ++  +         S
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESI------------NLHPT-PNSYIFLALTLADKENS 292

Query: 95  DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
               +F  KA  L+  + P +   G  + +  ++  A   +  A +L         Y+ L
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--ENVYPYIQL 350

Query: 155 ECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ 212
            C L    +   +  FF+         P V      I     ++  A   +  A      
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR---- 406

Query: 213 LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF 272
                + +  E +   +G         +G   I  +     ++        +K+  A++ 
Sbjct: 407 -----LEEVQEKIHVGIGP-------LIGKATILARQ----SSQDPTQLDEEKFNAAIKL 450

Query: 273 HKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326
             +A  + P        +  ++     +D A+  F  +  L R         ++
Sbjct: 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 37/301 (12%), Positives = 76/301 (25%), Gaps = 37/301 (12%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAH-----ELVDLYPDSAIAWYAVGCYYYLIG 92
           +    E+L N   A        L   F  A      E         +    +        
Sbjct: 99  RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158

Query: 93  RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV 152
           +  P+   L     +    L        S    + +D A A   +A             V
Sbjct: 159 QVLPSNTSLASFFGIFDSHL-----EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213

Query: 153 GLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKV 210
             +    +            +   +       +   G+  +  +N   A+    E+++  
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273

Query: 211 KQ------LGGEIIADKWEPLLNNLGHKAE-----DKVKQLGGEIIADKWEPLLNNLGHV 259
                   L            L +  +  E      K   L  E     +     + G +
Sbjct: 274 PTPNSYIFLAL---------TLADKENSQEFFKFFQKAVDLNPEY-PPTY----YHRGQM 319

Query: 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF 319
              L+ Y+ A E  ++A  + P     +  +  +    G    +  +F++T         
Sbjct: 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE 379

Query: 320 A 320
            
Sbjct: 380 V 380

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 38/333 (11%), Positives = 83/333 (24%), Gaps = 50/333 (15%)

Query: 35  LLLKGRVYEALE--NRALAAD-------CYKGALLADLFKLAHELVD------LYPDSAI 79
           LL  G++ +AL   + A+  D         +  +   + K    L D      L  D   
Sbjct: 13  LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA 72

Query: 80  AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE-------------- 125
           A    G      G+ D A     K    +                +              
Sbjct: 73  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132

Query: 126 -NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFV 182
             ++  A+        +        L                A      A  +  ++   
Sbjct: 133 GADYTAAITFLDKILEVCVWD--AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190

Query: 183 IHEMGVIAYQNHNYTVAENCFMEAL------SKVKQLGGEIIADKWEPLLNNLGHKAE-- 234
            +++  + YQ  ++ ++ +   E L       +      ++              +    
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250

Query: 235 -------DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF 287
                  + V +    + A+        + H   K +K  EA+    + L + P   +  
Sbjct: 251 TDATSKYESVMKTEPSV-AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309

Query: 288 CCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
                   +    D A+  +        +D   
Sbjct: 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 43/293 (14%), Positives = 79/293 (26%), Gaps = 67/293 (22%)

Query: 35  LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
            L  G+   A    A A   +  A+            D  PD+ IA+Y     +  +G+S
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAV------------DGDPDNYIAYYRRATVFLAMGKS 53

Query: 95  DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
             A   L K  +L   F  A L  GH    + + D+A   +                   
Sbjct: 54  KAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS------------- 100

Query: 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214
                 N     +    +  +  ++   +    + A+   +YT A     + L       
Sbjct: 101 ------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE------ 148

Query: 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHK 274
                                         +      L         K  +  +A+   K
Sbjct: 149 ------------------------------VCVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 275 QALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327
            A  +       F  I  +    GD + +++   + + L +D          V
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 46/309 (14%), Positives = 84/309 (27%), Gaps = 60/309 (19%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
           +G       +  +     + A            +   P  A AW  +G           A
Sbjct: 71  EGLKRLKEGDLPVTILFMEAA------------ILQDPGDAEAWQFLGITQAENENEQAA 118

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---FKGCHLPALYVGL 154
              L +   L    L A +    S+   +    A  A  N       +K           
Sbjct: 119 IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178

Query: 155 ECGLTNNARLASKFFD---------LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME 205
                + + + S   +            +    DP +   +GV+ + +  +  A + F  
Sbjct: 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238

Query: 206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265
           AL         +  + +                             L N LG       +
Sbjct: 239 AL--------TVRPEDYS----------------------------LWNRLGATLANGDR 262

Query: 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325
            EEA+E + +AL + P    +   +G      G    AV+ F   ++L+R       +  
Sbjct: 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322

Query: 326 YVIEQLIEE 334
             I   I  
Sbjct: 323 PAISGNIWA 331

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 36/245 (14%), Positives = 66/245 (26%), Gaps = 28/245 (11%)

Query: 72  DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQA 131
           +         +  G      G       F+  A   D     AW   G + A       A
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118

Query: 132 MAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVI 189
           + A      L +  +L AL   L    TN +    A +     +    +  +++      
Sbjct: 119 IVALQRCLEL-QPNNLKALM-ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176

Query: 190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW 249
                  + +                 +     E    N            G  I  D  
Sbjct: 177 PGLTRRMSKSPVDSSVLE--------GVKELYLEAAHQN------------GDMIDPDLQ 216

Query: 250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHK 309
                 LG +     ++  A++    AL V P   S +  +G   A     + AV  + +
Sbjct: 217 ----TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272

Query: 310 TMALK 314
            + ++
Sbjct: 273 ALEIQ 277

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 43/263 (16%), Positives = 74/263 (28%), Gaps = 38/263 (14%)

Query: 60  LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119
           LA + ++         + A   Y  G  Y  +G    AR    +A ++       +   G
Sbjct: 25  LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 84

Query: 120 HSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAH 177
                    D A  A+ +   L    +  A ++     L    R   A            
Sbjct: 85  IYLTQAGNFDAAYEAFDSVLEL-DPTYNYA-HLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKV 237
            DPF    +  +A Q  +   A+    +   K         +DK +   N +        
Sbjct: 143 NDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK---------SDKEQWGWNIVE------- 185

Query: 238 KQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT 297
                             LG+++ +    E           +A   + T   +G      
Sbjct: 186 ----------------FYLGNISEQ-TLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 228

Query: 298 GDLDSAVNYFHKTMALKRDDSFA 320
           GDLDSA   F   +A    +   
Sbjct: 229 GDLDSATALFKLAVANNVHNFVE 251

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 36/157 (22%)

Query: 186 MGVIAYQNHNYTVAENCFMEALSKVKQLG---GEIIADKWEPLLNNLG---------HKA 233
           +G   Y   N+  A     + L   K+ G    E IA       +NLG           A
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIA------YSNLGNAYIFLGEFETA 68

Query: 234 EDKVKQ-------LGGEI-IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA----- 280
            +  K+       L      A        +LG+    L+ YE+A+++H + L +A     
Sbjct: 69  SEYYKKTLLLARQLKDRAVEAQ----SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 281 -PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316
              +      +G      G+ D A+++  K + + R+
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNY 306
             NLG+ +  L  + +A+  H+Q L++A        +   +  +G      G+ ++A  Y
Sbjct: 12  FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEY 71

Query: 307 FHKTMALKR 315
           + KT+ L R
Sbjct: 72  YKKTLLLAR 80

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 31/267 (11%)

Query: 35  LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
           L  +G      +    A   Y+ A      K    + D   + A   + V   YY + ++
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAE-----KELPFVSD-DIEKAEFHFKVAEAYYHMKQT 157

Query: 95  DPARRFLGKATSLDKLFLP-------AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL 147
             +   + +A  + +           +  +   ++     +D+A+     A  L      
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217

Query: 148 PALY------VGLECGLTNNARLASKFFDLALSIAHED-----PFVIHEMGVIAYQNHNY 196
                     +      + + ++A + F  A  ++ E      P V+  +     +    
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277

Query: 197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK------VKQLGGEIIADKWE 250
             A     E L  +     +   + +   L  +  +  D+      +     + +    E
Sbjct: 278 QKAFQFIEEGLDHITARSHKFYKELFL-FLQAVYKETVDERKIHDLLSYFEKKNLHAYIE 336

Query: 251 PLLNNLGHVNRKLKKYEEALEFHKQAL 277
               +   V      +E+A  F+++ L
Sbjct: 337 ACARSAAAVFESSCHFEQAAAFYRKVL 363

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 32/227 (14%), Positives = 64/227 (28%), Gaps = 31/227 (13%)

Query: 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFV-- 182
           + E DQ +  Y++   +     L   Y+       N   +      +          +  
Sbjct: 44  QMEEDQDLLIYYS--LMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY 101

Query: 183 --IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLG--------- 230
             +   G+  +    Y  A   + EA  ++  +  +I  A+        +          
Sbjct: 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAE----FHFKVAEAYYHMKQT 157

Query: 231 HKAED---KVKQLGGEIIADKWE--PLLNNLGHVNRKLKKYEEALEFHKQALVVA----- 280
           H +     +   +              L  +       K Y++AL   + AL +A     
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217

Query: 281 -PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326
               A +   I      +GD   AV +F K   + R+          
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 37/304 (12%), Positives = 75/304 (24%), Gaps = 62/304 (20%)

Query: 36  LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD--SAIAWYAVGCYYYLIGR 93
           L+  R    L+             + +L +                + +  G Y +    
Sbjct: 57  LMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKE 116

Query: 94  SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG 153
              A  +  +A                   V ++ ++A   +F               V 
Sbjct: 117 YVEAIGYYREAEKELP-------------FVSDDIEKA-EFHFK--------------VA 148

Query: 154 LECGLTNNARLASKFFDLALSIAHEDPFVIHE-------MGVIAYQNHNYTVAENCFMEA 206
                     ++      AL I    P            +        +Y  A      A
Sbjct: 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA 208

Query: 207 LSKVKQLGGE-IIADKWEPLLNNLGH---------KAED---KVKQLGGEIIADKWEPLL 253
           L     +  +  IA      L N+ +          A +   K  ++  E + D    +L
Sbjct: 209 LELAMDIQNDRFIAI----SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVA--------PMKASTFCCIGYIQALTGDLDSAVN 305
             L     K  + ++A +F ++ L                    +         +   ++
Sbjct: 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324

Query: 306 YFHK 309
           YF K
Sbjct: 325 YFEK 328

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.8 bits (144), Expect = 5e-10
 Identities = 31/251 (12%), Positives = 62/251 (24%), Gaps = 70/251 (27%)

Query: 75  PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
           P  A +   +       G  + A R   KA  +   F  A          + +  +A+  
Sbjct: 6   PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65

Query: 135 YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH 194
           Y                                    A+ I+         MG    +  
Sbjct: 66  Y----------------------------------KEAIRISPTFADAYSNMGNTLKEMQ 91

Query: 195 NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN 254
           +   A  C+  A+                                     I   +    +
Sbjct: 92  DVQGALQCYTRAIQ------------------------------------INPAFADAHS 115

Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
           NL  +++      EA+  ++ AL + P     +C + +   +  D         K +++ 
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175

Query: 315 RDDSFATTMLS 325
            D      + S
Sbjct: 176 ADQLEKNRLPS 186

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 40/80 (50%)

Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
            LNNL ++ R+    EEA+  +++AL V P  A+    +  +    G L  A+ ++ + +
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 312 ALKRDDSFATTMLSYVIEQL 331
            +    + A + +   ++++
Sbjct: 71  RISPTFADAYSNMGNTLKEM 90

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 36/163 (22%)

Query: 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224
           A + +  AL +  E       +  +  Q      A   + EA+                 
Sbjct: 28  AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---------------- 71

Query: 225 LLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA 284
                               I+  +    +N+G+  ++++  + AL+ + +A+ + P  A
Sbjct: 72  --------------------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA 111

Query: 285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327
                +  I   +G++  A+  +   + LK D   A   L++ 
Sbjct: 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.1 bits (111), Expect = 5e-06
 Identities = 16/78 (20%), Positives = 38/78 (48%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
           +NL  V ++  K +EAL  +K+A+ ++P  A  +  +G       D+  A+  + + + +
Sbjct: 47  SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 106

Query: 314 KRDDSFATTMLSYVIEQL 331
               + A + L+ + +  
Sbjct: 107 NPAFADAHSNLASIHKDS 124

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 34  LLLLKGRVYEALE--NRALA-------ADCYKGALLADLFKLA------HELVDLYPDSA 78
           +   +G + EA+    +AL        A     ++L    KL        E + + P  A
Sbjct: 18  IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77

Query: 79  IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA 138
            A+  +G     +     A +   +A  ++  F  A               +A+A+Y  A
Sbjct: 78  DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA 137

Query: 139 FNL 141
             L
Sbjct: 138 LKL 140

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 39/300 (13%), Positives = 78/300 (26%), Gaps = 23/300 (7%)

Query: 35  LLLKGRVYEALENRALAADCYKGAL-LADLFKLAHELVDLY--PDSAIAWYAVGCYYYLI 91
            L +G +         A D +K  L          E        D      +     +  
Sbjct: 97  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156

Query: 92  GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY 151
           G    A  FL K   +         +    F  E E  +A++    A  L          
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216

Query: 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVK 211
           +        +  L+       L +  +            + ++      N  +E+  ++ 
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLDQDHK--------RCFAHYKQVKKLNKLIESAEELI 268

Query: 212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271
           + G      ++    +       + V +    I A+        + H   K +K  EA+ 
Sbjct: 269 RDG------RYTDATSKY-----ESVMKTEPSI-AEYTVRSKERICHCFSKDEKPVEAIR 316

Query: 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331
              + L + P   +          +    D A+  +        +D      L      L
Sbjct: 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 46/289 (15%), Positives = 78/289 (26%), Gaps = 63/289 (21%)

Query: 42  YEALENRA---LAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR 98
            E         LAA     AL        H  VD  PD+ IA+Y     +  +G+S  A 
Sbjct: 26  VEKHLELGKKLLAAGQLADAL-----SQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAAL 80

Query: 99  RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL 158
             L K   L   F  A L  GH    + + D+A   +                       
Sbjct: 81  PDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----------------- 123

Query: 159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII 218
             N     +    +  I  ++   +    + A+ + +YT A     + L           
Sbjct: 124 --NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE---------- 171

Query: 219 ADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV 278
                                     +      L         K  +  +A+   K A  
Sbjct: 172 --------------------------VCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205

Query: 279 VAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV 327
           +       F  I  +    GD + +++   + + L +D          V
Sbjct: 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 38/279 (13%), Positives = 72/279 (25%), Gaps = 62/279 (22%)

Query: 34  LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR 93
           L  L+   +        A    K A              L  D+  A+Y +   YY +G 
Sbjct: 179 LRELRAECFIKEGEPRKAISDLKAAS------------KLKNDNTEAFYKISTLYYQLGD 226

Query: 94  SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA-----YFNAFNLFKGC--- 145
            + +   + +   LD+     +  Y     +    + A        Y +A + ++     
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286

Query: 146 --HLPALYVGLECGL------TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT 197
              +    V  +  +            A +     L +  ++   + +          Y 
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346

Query: 198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH--------KAEDKVKQLG-------G 242
            A   +  A             +  + +   L          +  D  K LG        
Sbjct: 347 EAIQDYETAQE---------HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397

Query: 243 EII------ADKWEP----LLNNLGHVNRKLKKYEEALE 271
           EII      A +W P             +K      A E
Sbjct: 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 35/268 (13%), Positives = 90/268 (33%), Gaps = 32/268 (11%)

Query: 35  LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS 94
              +G           A   +K A           + D   + A  ++ +   YY + ++
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAE-----SKLIFVKD-RIEKAEFFFKMSESYYYMKQT 159

Query: 95  DPARRFLGKATSLDKLFL-------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL 147
             +  +  +A  + K              ++  +F    +++ A++ +  A+++ +    
Sbjct: 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219

Query: 148 PALY------VGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHN 195
           P L       +GL     +    A  +F  A+++  E       P     +  I Y+   
Sbjct: 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279

Query: 196 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK------VKQLGGEIIADKW 249
              A     + ++  ++ G  I   ++E  L +L     D+         L  +++    
Sbjct: 280 IDKAHEYHSKGMAYSQKAGDVIYLSEFE-FLKSLYLSGPDEEAIQGFFDFLESKMLYADL 338

Query: 250 EPLLNNLGHVNRKLKKYEEALEFHKQAL 277
           E    ++     + K +++A  +  +  
Sbjct: 339 EDFAIDVAKYYHERKNFQKASAYFLKVE 366

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 29/217 (13%)

Query: 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI- 183
           + E DQ +  Y++         L  L    +  +    RL+    ++    A     +  
Sbjct: 44  QMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEY 103

Query: 184 ---HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI-IADKWEPLLNNLG--------- 230
                 G+       Y  A   F +A SK+  +   I  A+        +          
Sbjct: 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAE----FFFKMSESYYYMKQT 159

Query: 231 HKAED---KVKQLGGEIIADKWE--PLLNNLGHVNRKLKKYEEALEFHKQALVVA----- 280
           + + D   +  ++  E  A         +        LK+YE+A+   ++A  +A     
Sbjct: 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219

Query: 281 -PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316
             +   T   IG  +      + A+ YF + +A+  +
Sbjct: 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 59.3 bits (143), Expect = 6e-10
 Identities = 44/298 (14%), Positives = 78/298 (26%), Gaps = 61/298 (20%)

Query: 43  EALENRALAADCY-----------KGALLADLFKLAHELVD----LYPDSAIAWYAVGCY 87
             ++      D Y           K   + +  +   + ++         A A    G  
Sbjct: 52  GLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKA 111

Query: 88  YYLIGRSDP-ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA-------- 138
             +     P A   L KA  L+   + AW   G  +  + +   A   +  A        
Sbjct: 112 LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171

Query: 139 --FNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY 196
              NL     L  L        + +   + +   LA+ +   D    + +G         
Sbjct: 172 SLQNL--SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG--------- 220

Query: 197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP----L 252
               N ++       Q                   +A     Q       D+       L
Sbjct: 221 ----NAYLSLYFNTGQNPKIS-------------QQALSAYAQA---EKVDRKASSNPDL 260

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT 310
             N   +++  + Y EALE   QA  + P           +      L S +    KT
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 31/289 (10%), Positives = 63/289 (21%), Gaps = 26/289 (8%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
                +ALE                          L P   +A  +       +      
Sbjct: 435 HDGGKQALETVQRLLPVLCQTH------------GLTPAQVVAIASHDGGKQALETVQQL 482

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
              L +A  L    + A               + +     A  L     +     G    
Sbjct: 483 LPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 542

Query: 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217
                +        A  +  +    I   G                 +A          +
Sbjct: 543 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--------GL 594

Query: 218 IADKWEPLLNNLG--HKAEDKVKQLGGEIIADKWEP----LLNNLGHVNRKLKKYEEALE 271
              +   + +N+G     E   + L     A    P     + +     + L+  +  L 
Sbjct: 595 TQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLP 654

Query: 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
              QA  + P +       G  +     +   +    +   L ++   A
Sbjct: 655 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 36/277 (12%), Positives = 74/277 (26%), Gaps = 31/277 (11%)

Query: 58  ALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLM 117
           A+ A    L    ++L P   +A  +       +         L +A  L    + A   
Sbjct: 172 AVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 231

Query: 118 YGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNA----RLASKFFDLAL 173
           +           + +     A  L     + A+           A    +        A 
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGL-PPDQVVAIA---SNIGGKQALETVQRLLPVLCQAH 287

Query: 174 SIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN-LGHK 232
            +  +    I   G                 +A          +  D+   + ++  G +
Sbjct: 288 GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH--------GLTPDQVVAIASHDGGKQ 339

Query: 233 AEDKVKQLGGEIIADKWEPL---------LNNLGHVNRKLKKYEEALEFHKQALVVAPMK 283
           A + V++L    +    +           + + G   + L+  +  L    QA  + P +
Sbjct: 340 ALETVQRL----LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

Query: 284 ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
                  G  QAL   +   +    +   L  D   A
Sbjct: 396 VVAIASNGGKQAL-ETVQRLLPVLCQAHGLTPDQVVA 431

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 34/295 (11%), Positives = 68/295 (23%), Gaps = 38/295 (12%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
                +AL            A              L PD  +A  + G     +      
Sbjct: 503 NIGGKQALATVQRLLPVLCQAH------------GLTPDQVVAIASNGGGKQALETVQRL 550

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
              L +A  L    + A    G          + +     A  L     + A+      G
Sbjct: 551 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TQVQVVAIA-SNIGG 608

Query: 158 LTN--NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGG 215
                  +        A  +       I                     +A         
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH-------- 660

Query: 216 EIIADKWEPLLNNLG-HKAEDKVKQLGGEIIADKWEPL---------LNNLGHVNRKLKK 265
            +  D+   + +N G  +A + V++L    +    +           + +     + L+ 
Sbjct: 661 GLTPDQVVAIASNGGGKQALETVQRL----LPVLCQAHGLTQEQVVAIASNNGGKQALET 716

Query: 266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
            +  L    QA  + P +       G  +     +   +    +   L      A
Sbjct: 717 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 43/319 (13%), Positives = 76/319 (23%), Gaps = 34/319 (10%)

Query: 23  FSQLQSEMKSALLLLKGRVYEALENRALA-----ADCYKGALLADLFKLAHELVDLYPDS 77
             Q Q ++K  +     + +EAL           A     A L  +      ++   P++
Sbjct: 59  SQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEA 118

Query: 78  AIA-WYAVGCYY----YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM 132
                  VG  +     L      A    G    LD   L      G   A+E  H    
Sbjct: 119 THEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRN 178

Query: 133 AAYFNAFNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIA 190
           A      NL     + A+      G      +         A  +       I       
Sbjct: 179 ALTGAPLNL-TPAQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK 236

Query: 191 YQNHNYTVAENCFMEALS----KVKQLGGEIIADKWEPLLNNLGHKAE-----DKVKQLG 241
                         +A      +V  +   I           L           +   L 
Sbjct: 237 QALETMQRLLPVLCQAHGLPPDQVVAIASNIGG------KQALETVQRLLPVLCQAHGLT 290

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
            + +       + + G   + L+  +  L    QA  + P +          +     + 
Sbjct: 291 PDQVV-----AIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 345

Query: 302 SAVNYFHKTMALKRDDSFA 320
             +    +   L  D   A
Sbjct: 346 RLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 32/289 (11%), Positives = 61/289 (21%), Gaps = 60/289 (20%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
                +ALE           A              L PD  +A  + G     +      
Sbjct: 639 HDGGKQALETVQRLLPVLCQAH------------GLTPDQVVAIASNGGGKQALETVQRL 686

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG 157
              L +A  L                     +Q   A  +           AL       
Sbjct: 687 LPVLCQAHGLT-------------------QEQV-VAIAS-----NNGGKQAL------- 714

Query: 158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI 217
                +        A  +  +    I   G                 +A          +
Sbjct: 715 --ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--------GL 764

Query: 218 IADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNL------GHVNRKLKKYEEALE 271
              +   + +N+G K   +  Q    ++       L  +          + L+  +  L 
Sbjct: 765 TPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLP 824

Query: 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
              QA  +   +          +     +   +    +   L  D   A
Sbjct: 825 VLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVA 873

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 44/306 (14%), Positives = 86/306 (28%), Gaps = 58/306 (18%)

Query: 43  EALENRALAADC---YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARR 99
           +     A        Y  A+     ++ ++L     +S   +      YY + + D A++
Sbjct: 4   DVEFRYADFLFKNNNYAEAI-----EVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQK 58

Query: 100 FLG---KATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156
            +       +  K     +  YG     + +   A+  Y  A +           +G   
Sbjct: 59  DIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE 216
               N  LA ++ +  +     DP V +E+G   Y N  Y  A++ F++ L         
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN---- 174

Query: 217 IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFH 273
                                       I   +          N       K   A  ++
Sbjct: 175 ----------------------------IYIGY----LWRARANAAQDPDTKQGLAKPYY 202

Query: 274 KQALVVAPMKAST--------FCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS 325
           ++ + V     +            I Y   +  D   A   +   +AL   +  A   L 
Sbjct: 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262

Query: 326 YVIEQL 331
             +E  
Sbjct: 263 MKLEHH 268

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 23/182 (12%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
            G++       +LA   Y+ A+            D        +  +G Y+Y  G    A
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAV------------DRDTTRLDMYGQIGSYFYNKGNFPLA 127

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL--- 154
            +++ K           +   G ++    E+ +A +++     L    ++  L+      
Sbjct: 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA 187

Query: 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--------HNYTVAENCFMEA 206
                    LA  +++  + +         +  + A +          +   A+  +   
Sbjct: 188 AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247

Query: 207 LS 208
           L+
Sbjct: 248 LA 249

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 28/256 (10%), Positives = 55/256 (21%), Gaps = 40/256 (15%)

Query: 34  LLLLKGRVYEALENRALAAD---CYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYL 90
           L   K         RA+       Y  A      +     V+     +  +   G     
Sbjct: 29  LEAKKYNSPYIYNRRAVCYYELAKYDLAQKD--IETYFSKVNATKAKSADFEYYGKILMK 86

Query: 91  IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL 150
            G+   A +    A   D   L  +   G  F  +     A+               P +
Sbjct: 87  KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--TDPKV 144

Query: 151 YVGLECGLTNNARL--ASKFFDLALSIAHEDPFVIHEMGVIAY---QNHNYTVAENCFME 205
           +  L      N     A   F   L +                    +    +A+  + +
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204

Query: 206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK 265
            +          +         +   +A                      + +     + 
Sbjct: 205 LIE---------VCAPGGAKYKDELIEA-------------------NEYIAYYYTINRD 236

Query: 266 YEEALEFHKQALVVAP 281
             +A    K  L + P
Sbjct: 237 KVKADAAWKNILALDP 252

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 31/281 (11%), Positives = 63/281 (22%), Gaps = 46/281 (16%)

Query: 43  EALENRALAAD---CYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARR 99
           +  +           +  A+    +  A    +L+ D            Y  G  + A  
Sbjct: 6   DKEKAEGNKFYKARQFDEAIEH--YNKA---WELHKDIT-YLNNRAAAEYEKGEYETAIS 59

Query: 100 FLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT 159
            L  A    +     + +   SFA        +         ++   L            
Sbjct: 60  TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK-SLTEHRTADILTKL 118

Query: 160 NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA 219
            NA    K  +    +  E        G   +   ++  A   + E +            
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK----------- 167

Query: 220 DKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV 279
                                     A +     +N      KL  + EA+    +A+  
Sbjct: 168 -------------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202

Query: 280 APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
            P     +      Q    +  SA+           + +  
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 13/67 (19%), Positives = 25/67 (37%)

Query: 69  ELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH 128
            ++    D+ +  + +G  Y    + D A   L  A   D  +  AW   G +   + + 
Sbjct: 10  AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69

Query: 129 DQAMAAY 135
             A  A+
Sbjct: 70  AGARQAW 76

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 13/65 (20%), Positives = 25/65 (38%)

Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
           L   LG    + ++++ AL   + AL   P  +  +  +G      GD   A   +   +
Sbjct: 21  LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80

Query: 312 ALKRD 316
           A  + 
Sbjct: 81  AAAQS 85

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 28/200 (14%), Positives = 61/200 (30%), Gaps = 2/200 (1%)

Query: 65  KLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV 124
                 V   P   +AW  +      +G +      + +  +L      A    G     
Sbjct: 10  LQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT 69

Query: 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH 184
           +  H +A      A +        AL++G        A  A+  +  A  +  E+P++  
Sbjct: 70  QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129

Query: 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI 244
           ++     +  ++   +    +  + V Q  G    + +  L  +     +    +   + 
Sbjct: 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ--GVGAVEPFAFLSEDASAAEQLACARTRAQA 187

Query: 245 IADKWEPLLNNLGHVNRKLK 264
           IA    PL          L+
Sbjct: 188 IAASVRPLAPTRVRSKGPLR 207

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 17/169 (10%), Positives = 41/169 (24%), Gaps = 16/169 (9%)

Query: 165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP 224
                  A+    +D      +        + T  E      L+         +      
Sbjct: 8   ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---------LHPGHPE 58

Query: 225 LLNNLGHKAEDKVKQLGGEIIADK-------WEPLLNNLGHVNRKLKKYEEALEFHKQAL 277
            +  LG     + +     ++  +          +   LGH      + E A   + +A 
Sbjct: 59  AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118

Query: 278 VVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY 326
            + P +      +   +    D  +      +  A       A    ++
Sbjct: 119 QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAF 167

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 18/117 (15%), Positives = 25/117 (21%)

Query: 92  GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY 151
                    L  A         AWLM   +     +      A      L  G       
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
           +G           A+     A   A E P +   +G           A   +  A  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 19/171 (11%), Positives = 48/171 (28%), Gaps = 30/171 (17%)

Query: 184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG------------- 230
            + G++         A     +A     + G    A      L+  G             
Sbjct: 80  EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM---ALDRAGKLMEPLDLSKAVH 136

Query: 231 --HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PM 282
              +A    +       A +    +     +  + +K++EA    ++   +       P 
Sbjct: 137 LYQQAAAVFENEERLRQAAEL---IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193

Query: 283 KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE 333
                     +Q    D  +A     ++ ++     F+ +     +E L++
Sbjct: 194 CYKKCIAQVLVQLHRADYVAAQKCVRESYSI---PGFSGSEDCAALEDLLQ 241

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 54/336 (16%), Positives = 106/336 (31%), Gaps = 63/336 (18%)

Query: 26  LQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVG 85
              E K+ +  L   +         A +C + A   +L +  H        S + W    
Sbjct: 45  QNREFKATMCNLLAYLKHLKGQNEAALECLRKAE--ELIQQEHAD-QAEIRSLVTWGNYA 101

Query: 86  CYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC 145
             YY +GR    + ++ K   + + F   + +           +         +   K  
Sbjct: 102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI-----------ESPELDCEEGWTRLK-- 148

Query: 146 HLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFME 205
                     CG   N R A   F+ AL    ++P     + + +Y+  N+  ++N   +
Sbjct: 149 ----------CGGNQNER-AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI-D 196

Query: 206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW-------EP----LLN 254
            L +  +L  +      + L   L  K     ++   E   +K         P    +L 
Sbjct: 197 PLRQAIRLNPD-----NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251

Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI-------------------QA 295
           +     R+  + ++A+E  K+AL   P  A   C IG                     + 
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311

Query: 296 LTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331
           L   +  AV +  K      +     ++L+ +    
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 41/300 (13%), Positives = 69/300 (23%), Gaps = 68/300 (22%)

Query: 24  SQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYA 83
            +L  E     L   G   E       A  C++ AL            +  P +      
Sbjct: 136 PELDCEEGWTRLKCGGNQNER------AKVCFEKAL------------EKKPKNPEFTSG 177

Query: 84  VGCYYYLI---GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN 140
           +    Y +     S  A   L +A  L+       ++         E  +          
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE------ 231

Query: 141 LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAE 200
                                     K  + AL  A     V+        +      A 
Sbjct: 232 ------------------------GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI 267

Query: 201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN 260
               +AL                 L   +G     KV Q+             N +    
Sbjct: 268 ELLKKALE---------YIPNNAYLHCQIGCCYRAKVFQVMNL--------RENGMYGKR 310

Query: 261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
           + L+    A+   K+A             +  + AL    + A  YF K  + +      
Sbjct: 311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 40/293 (13%), Positives = 67/293 (22%), Gaps = 43/293 (14%)

Query: 29  EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYY 88
            +K  L L   ++ E  E         + AL            +  P       +   +Y
Sbjct: 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEAL------------EKAPGVTDVLRSAAKFY 257

Query: 89  YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLP 148
                 D A   L KA              G               Y             
Sbjct: 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIG-------------CCYRAKVFQVMNLREN 304

Query: 149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
            +Y   +  L      A      A         V   +  +      Y  AE  F +  S
Sbjct: 305 GMYGKRK--LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362

Query: 209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII----ADKWEPLLNNLGHVNRKLK 264
           K      E+     + L    G+    ++K     I       K          +  KL+
Sbjct: 363 K------ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416

Query: 265 KYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD 317
           K  +        L      +     + ++Q L   +  A     + +      
Sbjct: 417 KIAK------MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 41/279 (14%), Positives = 71/279 (25%), Gaps = 75/279 (26%)

Query: 42  YEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFL 101
                 R      Y+ A  A  F  A   ++   + AI +         +   + A  F 
Sbjct: 26  GGQQMGRGSEFGDYEKAAEA--FTKA---IEENKEDAIPYINFANLLSSVNELERALAFY 80

Query: 102 GKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN 161
            KA  LD     A+   G+ + V+  + +A                              
Sbjct: 81  DKALELDSSAATAYYGAGNVYVVKEMYKEAKDM--------------------------- 113

Query: 162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK 221
                  F+ AL    E+  + + +G +  +     +A      A+              
Sbjct: 114 -------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE------------- 153

Query: 222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
               LN    +A                       G         +EAL          P
Sbjct: 154 ----LNENDTEA-------------------RFQFGMCLANEGMLDEALSQFAAVTEQDP 190

Query: 282 MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
             A  F   G   A   + + A+    K + ++ D   A
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 35/211 (16%)

Query: 125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH 184
            + H  +        ++        +  G E G    A    + F  A+    ED     
Sbjct: 5   HHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAA---EAFTKAIEENKEDAIPYI 61

Query: 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI---IADKWEPLLNNLGHKAEDKVKQLG 241
               +    +    A   + +AL        E+    A  +       G+      +   
Sbjct: 62  NFANLLSSVNELERALAFYDKAL--------ELDSSAATAY----YGAGN-VYVVKEMYK 108

Query: 242 GEII------------ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 289
                            D +      LG V  KL++ + AL + ++A+ +          
Sbjct: 109 EAKDMFEKALRAGMENGDLF----YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ 164

Query: 290 IGYIQALTGDLDSAVNYFHKTMALKRDDSFA 320
            G   A  G LD A++ F          + A
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 46.2 bits (111), Expect = 9e-07
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
            NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L
Sbjct: 13  YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72

Query: 314 KRDDSFA 320
             +++ A
Sbjct: 73  DPNNAEA 79

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.5 bits (96), Expect = 9e-05
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
            NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L
Sbjct: 47  YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

Query: 314 KRDDSFA 320
             +++ A
Sbjct: 107 DPNNAEA 113

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 41/240 (17%), Positives = 76/240 (31%), Gaps = 50/240 (20%)

Query: 47  NRALAADC---YKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK 103
           N  + A     +KGAL      +           +   + +GC Y ++     A +   +
Sbjct: 11  NEGVLAADKKDWKGAL-DAFSAVQ-------DPHSRICFNIGCMYTILKNMTEAEKAFTR 62

Query: 104 ATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNAR 163
           + + DK    A+   G  +    ++D A+     A    +G  L                
Sbjct: 63  SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK------------ 110

Query: 164 LASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE 223
                  L L        V++ +  +  +   +  AE     A S            K E
Sbjct: 111 ------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM-----------KSE 153

Query: 224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE---FHKQALVVA 280
           P  + +    E   KQ         +EP++  +G + R  ++    L    +  +A VVA
Sbjct: 154 PRHSKIDKAMECVWKQKL-------YEPVVIPVGRLFRPNERQVAQLAKKDYLGKATVVA 206

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
           L N G +    K ++ AL+            +     IG +  +  ++  A   F +++ 
Sbjct: 9   LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65

Query: 313 LKRDDSFA 320
             +  + A
Sbjct: 66  RDKHLAVA 73

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.9 bits (105), Expect = 3e-06
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
            NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L
Sbjct: 13  YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72

Query: 314 KRD 316
             +
Sbjct: 73  DPN 75

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
            NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L
Sbjct: 5   YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64

Query: 314 KRDDSFA 320
               + A
Sbjct: 65  DPRSAEA 71

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
            NLG+   K   Y+EA+E++++AL + P  A  +  +G      GD D A+ Y+ K + L
Sbjct: 39  YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98

Query: 314 KRDDSFA 320
               + A
Sbjct: 99  DPRSAEA 105

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 20/136 (14%)

Query: 185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI 244
           +    A +      A + F + +         +  D+ E        K  +   +L    
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTI--------ALNIDRTEMYYWTNVDKNSEISSKL---- 56

Query: 245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV 304
                      L    +K + Y++A  F+K+ L  AP           +Q   G    A+
Sbjct: 57  --------ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 305 NYFHKTMALKRDDSFA 320
             + K + L+ D+  A
Sbjct: 109 RMYEKILQLEADNLAA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 27/190 (14%), Positives = 48/190 (25%), Gaps = 45/190 (23%)

Query: 19  FFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA 78
           ++       SE+ S L       Y+   N   A   YK  L               P++ 
Sbjct: 41  YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL------------QKAPNNV 88

Query: 79  IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA 138
               A        G+   A R   K   L+   L A +  G+ + +  E ++        
Sbjct: 89  DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK------- 141

Query: 139 FNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV 198
                                       +     LS   +  +  +  G+       Y  
Sbjct: 142 --------------------------KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175

Query: 199 AENCFMEALS 208
           A N   + + 
Sbjct: 176 ARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 25/218 (11%), Positives = 54/218 (24%), Gaps = 37/218 (16%)

Query: 114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL 173
             L    +     ++ QA++ +     L                  +   +   ++    
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNI----------------DRTEM--YYWTNVD 47

Query: 174 SIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA 233
             +     +  E+ +   +N NY  A   + E L           A      L     + 
Sbjct: 48  KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ---------KAPNNVDCLEACA-EM 97

Query: 234 EDKVKQLGGEI--------IADKWEPLLNNLGHV-NRKLKKYEEALEFHKQALVVAPMKA 284
           +    Q    +        +          LG+      ++ ++ LE   + L       
Sbjct: 98  QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157

Query: 285 STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT 322
                 G  +  T   + A N   K +          T
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 12/67 (17%), Positives = 19/67 (28%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
            +LG    K    +   E  +++L  AP        +G         D AV    K    
Sbjct: 46  LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105

Query: 314 KRDDSFA 320
              +   
Sbjct: 106 NPINFNV 112

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
             LG    +++KY+ A+    +     P+  +    +G      G  D A++ F   + L
Sbjct: 80  TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139

Query: 314 KRDDSFA 320
           + ++   
Sbjct: 140 RPNEGKV 146

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 27/67 (40%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
             LG     L +++EA++  K AL + P +      I +     G  + A+ +F K   L
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173

Query: 314 KRDDSFA 320
               S  
Sbjct: 174 DEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 11/67 (16%), Positives = 23/67 (34%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
            + G  + K  +Y +A+   +Q              +G     TG +D       +++A 
Sbjct: 12  RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD 71

Query: 314 KRDDSFA 320
             D+   
Sbjct: 72  APDNVKV 78

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 12/98 (12%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
           +G     L N A AA  ++     +            P+   AW ++G       +   A
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKE------------PEREEAWRSLGLTQAENEKDGLA 70

Query: 98  RRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
              L  A  LD   +        S   E+  + A+A+ 
Sbjct: 71  IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 10/62 (16%), Positives = 16/62 (25%)

Query: 80  AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAF 139
                G     +     A          +     AW   G + A   +   A+ A  +A 
Sbjct: 19  NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78

Query: 140 NL 141
            L
Sbjct: 79  ML 80

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 33  ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG 92
           AL+ +       L+ + LAA       L         L     + +I +        + G
Sbjct: 240 ALVDIVRHSQHPLDEKQLAA-------LNTEIDNIVTL-PELNNLSIIYQIKAVSALVKG 291

Query: 93  RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
           ++D + + +     L+  +L  +++ G  + ++  + +A  AY  AFNL
Sbjct: 292 KTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNL 339

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 9/61 (14%), Positives = 20/61 (32%)

Query: 75  PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
           P+     YA+   +     +  A     +    D  ++  +   G  +   +  D A+  
Sbjct: 4   PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63

Query: 135 Y 135
           Y
Sbjct: 64  Y 64

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 10/69 (14%), Positives = 25/69 (36%)

Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM 311
               L   + K      AL   ++ +   P    T+  +G +       D A++ + + +
Sbjct: 9   TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68

Query: 312 ALKRDDSFA 320
            + R++   
Sbjct: 69  EVAREEGTQ 77

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 34/243 (13%), Positives = 59/243 (24%), Gaps = 52/243 (21%)

Query: 75  PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
             +      +G   Y +GR D A     +A   +     A      +       + A+  
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 135 YFNA-----------FNLFKGCHLPALYVGLECGLTNNARL--ASKFFDLALSIAHEDPF 181
                            L       ALY   E        L  A      A  +      
Sbjct: 62  GKTLVARTPRYLGGYMVL--SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

Query: 182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLG 241
           +  + G++         AE    +AL+         + D                     
Sbjct: 120 LHLQRGLVYALLGERDKAEASLKQALA---------LEDT-------------------- 150

Query: 242 GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD 301
                +      + L  +   + + +EAL  + +AL  AP              L G  +
Sbjct: 151 ----PEIR----SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202

Query: 302 SAV 304
            A 
Sbjct: 203 EAA 205

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 22/67 (32%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
             LG     L +Y+ AL   ++AL   P        +   Q   G ++ A+      +A 
Sbjct: 9   LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68

Query: 314 KRDDSFA 320
                  
Sbjct: 69  TPRYLGG 75

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
              G V   L + ++A    KQAL +          +  +    G LD A+  + K +  
Sbjct: 122 LQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQ 180

Query: 314 KRDDSFA 320
              D   
Sbjct: 181 APKDLDL 187

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 13/65 (20%), Positives = 20/65 (30%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
              LG   R L +Y +A       +   P   +       +    G  +  V    K +A
Sbjct: 30  YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89

Query: 313 LKRDD 317
              DD
Sbjct: 90  ETSDD 94

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 114 AWLMYGHSFAVENEHDQAMAAYFNAFNL------FKGCHLPALYVGLECGLTNNARLASK 167
            W + G  +  +N++  ++ AY  A  L              LY      +T   R    
Sbjct: 46  QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM-- 103

Query: 168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALS 208
             D AL++   +   +  +   A+   NY  A   + + + 
Sbjct: 104 -IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 15/104 (14%)

Query: 35  LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-- 92
             L G  Y    + + +   Y+ AL             L  ++A  + A+    Y     
Sbjct: 47  WALLGEYYLWQNDYSNSLLAYRQAL------------QLRGENAELYAALATVLYYQASQ 94

Query: 93  -RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAY 135
             +   R  + KA +LD   + A ++      ++  + QA+  +
Sbjct: 95  HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.8 bits (100), Expect = 8e-05
 Identities = 36/286 (12%), Positives = 59/286 (20%), Gaps = 60/286 (20%)

Query: 24  SQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYA 83
                E      +   R Y A     +  D               E+         A   
Sbjct: 26  KPSSPERDVERDVFLYRAYLAQRKYGVVLD---------------EIKPSSAPELQAVRM 70

Query: 84  VGCYYYLIGRSDPARRFLGK--ATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL 141
              Y     R D     L +  + S+D       LM    +  +   D A+       +L
Sbjct: 71  FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130

Query: 142 FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--HNYTVA 199
                   + + L     +   LA K          +          ++          A
Sbjct: 131 ECMAMTVQILLKL-----DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185

Query: 200 ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV 259
              F E   K                                          LLN     
Sbjct: 186 YYIFQEMADK------------------------------------CSPTLLLLNGQAAC 209

Query: 260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN 305
           +    ++E A    ++AL        T   +  +    G      N
Sbjct: 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN 255

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 40.5 bits (96), Expect = 9e-05
 Identities = 9/67 (13%), Positives = 27/67 (40%)

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
              G +      Y E+++  ++A+ + P ++  +   G         + AV+ ++  + +
Sbjct: 10  YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69

Query: 314 KRDDSFA 320
             D+   
Sbjct: 70  IEDEYNK 76

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 50/265 (18%)

Query: 97  ARRFLGKATSLDKLFLPAW-LMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE 155
               L +A   +K  +P+   M   S +   + ++A      A  +++            
Sbjct: 4   PVELLKRA---EKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYR------------ 48

Query: 156 CGLTNNARLASKFFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK 209
             L     LA   F  A           E      E         N   A +    A+  
Sbjct: 49  --LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106

Query: 210 VKQLGGEI--------IADKWEPLLNNLG------HKAEDKVKQLGGEIIADKWEPLLNN 255
               G           + +  E  L++          A +   Q     +++K       
Sbjct: 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK---CFIK 163

Query: 256 LGHVNRKLKKYEEALEFHKQALVVAPMK-------ASTFCCIGYIQALTGDLDSAVNYFH 308
              +     +Y EA + + + +  +             F   G  Q    D  +A     
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

Query: 309 KTMALKRDDSFATTMLSYVIEQLIE 333
           +      D +FA +  S  ++ LI+
Sbjct: 224 E--GQSEDPNFADSRESNFLKSLID 246

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 19/152 (12%)

Query: 183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG 242
               G   ++      A   +  A++ +       +  K++ +   +      K      
Sbjct: 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV------KN----- 230

Query: 243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS 302
                   P   N+     KLK+Y+EA+      L             G  +A  G +DS
Sbjct: 231 --------PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDS 282

Query: 303 AVNYFHKTMALKRDDSFATTMLSYVIEQLIEE 334
           A + F K      DD      L  + EQ    
Sbjct: 283 ARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI-------GYIQALTGDLDSAV 304
             NN   V  + KK+ E ++F ++A+ V     + +  I       G       DL  AV
Sbjct: 44  FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAV 103

Query: 305 NYFHKTMALKRD 316
            +FH++++  RD
Sbjct: 104 QWFHRSLSEFRD 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	100.0
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	100.0
3u4t_A	272	TPR repeat-containing protein; structural genomics	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	100.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.98
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.98
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.98
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.98
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.97
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.97
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.97
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.97
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.97
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.96
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.96
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.96
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.96
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.96
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.96
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.95
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.95
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.95
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.95
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.95
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.95
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.95
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.94
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.94
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.94
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.93
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.93
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.93
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.93
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.93
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.92
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.92
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.91
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.91
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.91
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.91
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.91
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.91
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.9
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.9
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.9
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.88
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.88
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.88
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.88
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.88
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.87
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.86
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.86
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.86
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.86
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.85
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.85
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.84
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.84
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.84
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.83
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.83
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.83
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.82
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.82
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.82
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.81
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.8
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.8
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.8
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.79
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.79
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.78
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.78
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.77
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.76
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.76
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.75
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.75
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.75
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.75
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.74
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.74
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.74
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.74
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.74
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.73
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.73
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.73
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.73
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.71
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.71
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.71
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.7
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.7
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.7
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.68
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.68
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.68
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.68
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.65
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.65
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.65
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.64
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.64
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.63
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.63
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.63
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.63
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.63
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.62
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.61
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.6
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.6
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.58
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.58
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.58
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.55
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.55
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.44
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.41
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.39
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.37
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.3
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.27
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.27
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.26
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.23
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.22
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.22
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.22
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.19
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.18
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.15
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.14
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.11
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.1
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.96
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.91
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.86
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.82
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.81
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.78
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.74
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.73
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.62
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.58
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.48
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.34
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.25
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.23
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.07
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.06
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.82
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.79
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.68
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.4
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.23
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.14
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.99
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.97
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.89
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.84
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.68
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.65
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.61
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.58
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.55
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.54
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.54
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.46
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.44
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.35
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.3
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.09
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.03
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.94
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.72
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.41
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.01
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.28
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	91.79
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	90.89
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.6
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.16
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	83.54
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	83.5
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	83.1
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.24

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.8e-35  Score=252.75  Aligned_cols=298  Identities=17%  Similarity=0.179  Sum_probs=217.1

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYY   88 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~   88 (342)
                      ....++.+|.++...|++++|+..|++++                      +++|...+++++..+|++..++..+|.++
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  145 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45577788888999999999998888875                      14566667777777777777777777777


Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHH
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKF  168 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  168 (342)
                      ...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  225 (388)
T 1w3b_A          146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA  225 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCC
Q psy3701         169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIAD  247 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  247 (342)
                      +++++..+|+++.++..+|.++...|++++|+..|+++++.+|.++..  .......+...|+ ..++...+.. ....|
T Consensus       226 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~g~-~~~A~~~~~~al~~~p  302 (388)
T 1w3b_A          226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKGS-VAEAEDCYNTALRLCP  302 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHHHSC-HHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHhhCc
Confidence            777777777777777777777777777777777777777777765310  0001111122222 2233333333 33456


Q ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         248 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       248 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      ....++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~  382 (388)
T 1w3b_A          303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence            66778888888888888888888888888888888888888888888888888888888888888888888888888887


Q ss_pred             HHHh
Q psy3701         328 IEQL  331 (342)
Q Consensus       328 ~~~~  331 (342)
                      +...
T Consensus       383 ~~~~  386 (388)
T 1w3b_A          383 LKEM  386 (388)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            7654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.2e-35  Score=244.05  Aligned_cols=282  Identities=54%  Similarity=0.964  Sum_probs=215.2

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYYL   90 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~   90 (342)
                      .++..+|..+...|++++|+..|++++                      +++|+..+++++..+|.++.++..+|.++..
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  102 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM  102 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            455677888888888888888888864                      2555566666667777777777777777777


Q ss_pred             hC-ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701          91 IG-RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF  169 (342)
Q Consensus        91 ~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  169 (342)
                      .| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+
T Consensus       103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (330)
T 3hym_B          103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF  182 (330)
T ss_dssp             SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            77 77777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCC
Q psy3701         170 DLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW  249 (342)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
                      ++++...|+++.++..+|.++...|++++|+..++++++..+...+                           ....+..
T Consensus       183 ~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------------~~~~~~~  235 (330)
T 3hym_B          183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN---------------------------EVTVDKW  235 (330)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------------SCTTTTC
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------------cccccHH
Confidence            7777777777777777777777777777777777777776644320                           0012444


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.++.
T Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HhhhcCCCCCCC
Q psy3701         330 QLIEESPPFPGN  341 (342)
Q Consensus       330 ~~~~~~~~~~~~  341 (342)
                      ....+.+.++++
T Consensus       316 ~~~g~~~a~~~~  327 (330)
T 3hym_B          316 MYIGDSEAYIGA  327 (330)
T ss_dssp             TTTTC-------
T ss_pred             HHhCchhccCCC
Confidence            777776666653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3.1e-34  Score=245.09  Aligned_cols=297  Identities=15%  Similarity=0.148  Sum_probs=231.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCYYY   89 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~   89 (342)
                      ...+..+|.++...|++++|+..+++++                      +++|+..+++++..+|+++.++..+|.++.
T Consensus        33 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  112 (388)
T 1w3b_A           33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV  112 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence            4566789999999999999999888765                      367777777777777777777777777777


Q ss_pred             HhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701          90 LIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF  169 (342)
Q Consensus        90 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  169 (342)
                      ..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|
T Consensus       113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  192 (388)
T 1w3b_A          113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF  192 (388)
T ss_dssp             HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77888888888877777777777777777887777788888888888888777777777777888888888888888888


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCC
Q psy3701         170 DLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADK  248 (342)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  248 (342)
                      +++++.+|+++.++..+|.++...|++++|+..+++++..+|++..  .......++...++ .+++...+.. ....|.
T Consensus       193 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~  269 (388)
T 1w3b_A          193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV--VHGNLACVYYEQGL-IDLAIDTYRRAIELQPH  269 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTC-HHHHHHHHHHHHHTCSS
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCC
Confidence            8888888888788888888888888888888888888877776630  00001112222222 2344444444 445677


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      .+.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus       270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  349 (388)
T 1w3b_A          270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL  349 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHh
Q psy3701         329 EQL  331 (342)
Q Consensus       329 ~~~  331 (342)
                      ...
T Consensus       350 ~~~  352 (388)
T 1w3b_A          350 QQQ  352 (388)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=5.2e-33  Score=234.49  Aligned_cols=289  Identities=12%  Similarity=-0.008  Sum_probs=240.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC--
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK--  109 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--  109 (342)
                      ..+++.+|.++...|++++|+..|++            ++..+|+++.++..+|.++...|++++|+..|++++..+|  
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  104 (359)
T 3ieg_A           37 YIAYYRRATVFLAMGKSKAALPDLTK------------VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE  104 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHH------------HHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Confidence            34555666666666666666666666            4688999999999999999999999999999999999999  


Q ss_pred             -CcHHHHHHh------------hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC
Q psy3701         110 -LFLPAWLMY------------GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIA  176 (342)
Q Consensus       110 -~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  176 (342)
                       +++.++..+            |.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  184 (359)
T 3ieg_A          105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK  184 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence             888888777            7899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc----------hhhHHHHhhhhHHHHHHHhch-hcc
Q psy3701         177 HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK----------WEPLLNNLGHKAEDKVKQLGG-EII  245 (342)
Q Consensus       177 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~  245 (342)
                      |.++.++..+|.++...|++++|+..++++++..|.++.......          ....+...++ ..++...+.. ...
T Consensus       185 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~  263 (359)
T 3ieg_A          185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKT  263 (359)
T ss_dssp             SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999988741110000          0111222222 2233333333 223


Q ss_pred             CCCCh----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701         246 ADKWE----PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT  321 (342)
Q Consensus       246 ~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  321 (342)
                      .|...    .++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++
T Consensus       264 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  343 (359)
T 3ieg_A          264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR  343 (359)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence            34433    45778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhh
Q psy3701         322 TMLSYVIEQLIE  333 (342)
Q Consensus       322 ~~l~~~~~~~~~  333 (342)
                      ..++.+...+.+
T Consensus       344 ~~l~~~~~~~~~  355 (359)
T 3ieg_A          344 EGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988877654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=100.00  E-value=3.6e-34  Score=241.44  Aligned_cols=256  Identities=10%  Similarity=-0.046  Sum_probs=240.2

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC-hHHHHHHHHHHhhcC
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR-SDPARRFLGKATSLD  108 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~  108 (342)
                      ....++..+|.++...|++++|+..|+++            +..+|++..+|+.+|.++...|+ +++|+.+|++++.++
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~a------------l~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~  162 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDA------------IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ  162 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHH------------HHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence            35677888999999999999999999996            59999999999999999999997 999999999999999


Q ss_pred             CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701         109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGV  188 (342)
Q Consensus       109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  188 (342)
                      |++..+|+.+|.++...|++++|+..|+++++++|.+..+|..+|.++...|++++|+..|+++++++|++..+|+.+|.
T Consensus       163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~  242 (382)
T 2h6f_A          163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF  242 (382)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-hcChhHH-----HHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         189 IAYQ-NHNYTVA-----ENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       189 ~~~~-~~~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      ++.. .|.+++|     +.+|++++.++|++                                    ..+|.++|.++..
T Consensus       243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~------------------------------------~~a~~~l~~ll~~  286 (382)
T 2h6f_A          243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHN------------------------------------ESAWNYLKGILQD  286 (382)
T ss_dssp             HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHTT
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHCCCC------------------------------------HHHHHHHHHHHHc
Confidence            9999 5665888     59999999999999                                    5899999999999


Q ss_pred             hh--hHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC--------C-hHHHHHHHHHH-HhcccCchhHHhHHHHHHHH
Q psy3701         263 LK--KYEEALEFHKQALVVAPMKASTFCCIGYIQALTG--------D-LDSAVNYFHKT-MALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       263 ~g--~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~  330 (342)
                      .|  ++++|++.++++ +.+|+++.++..+|.++..+|        + +++|+.+|+++ ++++|.....|..++..+..
T Consensus       287 ~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          287 RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            88  799999999998 999999999999999999985        2 58999999999 99999999999999998877


Q ss_pred             hhhc
Q psy3701         331 LIEE  334 (342)
Q Consensus       331 ~~~~  334 (342)
                      ....
T Consensus       366 ~~~~  369 (382)
T 2h6f_A          366 KHST  369 (382)
T ss_dssp             HHCC
T ss_pred             Hhcc
Confidence            5443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=4.6e-34  Score=242.01  Aligned_cols=254  Identities=17%  Similarity=0.093  Sum_probs=230.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      +...++.+|..+...|++++|+..|+++            +..+|+++.++..+|.++...|++++|+..|+++++.+|+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a------------l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  131 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAA------------ILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN  131 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            3455788999999999999999999996            5889999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH----------HHHHhhhCCHHHHHHHHHHHHhhCCC--
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV----------GLECGLTNNARLASKFFDLALSIAHE--  178 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~~~~~~~~--  178 (342)
                      ++.++..+|.++...|++++|+..++++++..|.+...+..+          |.++...|++++|+..+++++...|+  
T Consensus       132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  211 (365)
T 4eqf_A          132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI  211 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred             CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence            999999999999999999999999999999999866655544          89999999999999999999999999  


Q ss_pred             ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701         179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH  258 (342)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  258 (342)
                      ++.++..+|.++...|++++|+..|+++++..|.+                                    ..++..+|.
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~l~~  255 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------------------------------------YSLWNRLGA  255 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHH
Confidence            89999999999999999999999999999999988                                    589999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc------------hhHHhHHHH
Q psy3701         259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD------------SFATTMLSY  326 (342)
Q Consensus       259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~  326 (342)
                      ++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|++            ..++..++.
T Consensus       256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~  335 (365)
T 4eqf_A          256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI  335 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999883            567888888


Q ss_pred             HHHHhh
Q psy3701         327 VIEQLI  332 (342)
Q Consensus       327 ~~~~~~  332 (342)
                      ++...+
T Consensus       336 ~~~~~g  341 (365)
T 4eqf_A          336 ALSLMD  341 (365)
T ss_dssp             HHHHHT
T ss_pred             HHHHcC
Confidence            876554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=2.7e-32  Score=237.49  Aligned_cols=302  Identities=13%  Similarity=-0.007  Sum_probs=247.0

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCY   87 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~   87 (342)
                      .+...++.+|..+...|++++|+..|++++                      +++|+..+++++..+|+++.++..+|.+
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  103 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            355677788888888888888888888765                      3677777888888899999999999999


Q ss_pred             HHHhCChHHHHHHHHHHhhcCCCcH---HHHHHh------------hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          88 YYLIGRSDPARRFLGKATSLDKLFL---PAWLMY------------GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        88 ~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      +...|++++|+..|++++..+|++.   .++..+            |.++...|++++|+..++++++..|.+..++..+
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  183 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR  183 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999998887   666555            6668889999999999999999999988889999


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc----------h
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK----------W  222 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~----------~  222 (342)
                      |.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...|++........          .
T Consensus       184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (450)
T 2y4t_A          184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES  263 (450)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998887741110000          0


Q ss_pred             hhHHHHhhhhHHHHHHHhch-hccCCCC----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh
Q psy3701         223 EPLLNNLGHKAEDKVKQLGG-EIIADKW----EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT  297 (342)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  297 (342)
                      ...+...++ ..++...+.. ....|..    ...+..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus       264 ~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  342 (450)
T 2y4t_A          264 AEELIRDGR-YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE  342 (450)
T ss_dssp             HHHHHHHTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            112222222 2233344433 2334443    347899999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         298 GDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       298 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      |++++|+..|+++++++|+++.++..++.+.....
T Consensus       343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK  377 (450)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999997765543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=1e-32  Score=233.78  Aligned_cols=253  Identities=20%  Similarity=0.133  Sum_probs=238.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      ...++.+|..+...|++++|+..|+++            +..+|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~a------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  131 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAA------------VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN  131 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHH------------HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence            456778999999999999999999996            58899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH----------------HHHHHHhhhCCHHHHHHHHHHHHhh
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL----------------YVGLECGLTNNARLASKFFDLALSI  175 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------~l~~~~~~~~~~~~A~~~~~~~~~~  175 (342)
                      +.++..+|.++...|++++|+..+++++...|.+...+.                .++.++ ..|++++|+..+++++..
T Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~  210 (368)
T 1fch_A          132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL  210 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999877765                466666 999999999999999999


Q ss_pred             CCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHH
Q psy3701         176 AHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLL  253 (342)
Q Consensus       176 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (342)
                      .|+  ++.++..+|.++...|++++|+..+++++...|.+                                    ..++
T Consensus       211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------------~~~~  254 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------------------------------------YLLW  254 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------------------------------------HHHH
Confidence            999  89999999999999999999999999999999988                                    5899


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc-----------hhHHh
Q psy3701         254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD-----------SFATT  322 (342)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~  322 (342)
                      ..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|++           ..++.
T Consensus       255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  334 (368)
T 1fch_A          255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS  334 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998           88999


Q ss_pred             HHHHHHHHhhh
Q psy3701         323 MLSYVIEQLIE  333 (342)
Q Consensus       323 ~l~~~~~~~~~  333 (342)
                      .++.++...++
T Consensus       335 ~l~~~~~~~g~  345 (368)
T 1fch_A          335 TLRLALSMLGQ  345 (368)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhCC
Confidence            99999987764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-32  Score=244.75  Aligned_cols=270  Identities=32%  Similarity=0.551  Sum_probs=234.4

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGAL----------------------LADLFKLAHELVDLYPDSAIAWYAVGCY   87 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~----------------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~   87 (342)
                      .+..++..+|..+...|++++|+..|++++                      .++|..++++++...|+++.++..+|.+
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  382 (597)
T 2xpi_A          303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY  382 (597)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            456778889999999999999999999875                      3677788888888888888888888888


Q ss_pred             HHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHH
Q psy3701          88 YYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASK  167 (342)
Q Consensus        88 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  167 (342)
                      |...|++++|+.+|+++++.+|.+..+|..+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|++
T Consensus       383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  462 (597)
T 2xpi_A          383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE  462 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCC
Q psy3701         168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD  247 (342)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (342)
                      .|+++++..|.++.++..+|.++...|++++|+..|+++++..|..+                              ..|
T Consensus       463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------------------~~p  512 (597)
T 2xpi_A          463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ------------------------------SNE  512 (597)
T ss_dssp             HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC------------------------------CCS
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc------------------------------cch
Confidence            88888888888888888888888888888888888888888766532                              122


Q ss_pred             C-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         248 K-WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       248 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      . ...++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.
T Consensus       513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  592 (597)
T 2xpi_A          513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR  592 (597)
T ss_dssp             GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            2 257999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHH
Q psy3701         327 VIE  329 (342)
Q Consensus       327 ~~~  329 (342)
                      ++.
T Consensus       593 ~~~  595 (597)
T 2xpi_A          593 ALE  595 (597)
T ss_dssp             TTC
T ss_pred             HHh
Confidence            764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=100.00  E-value=8e-32  Score=224.44  Aligned_cols=255  Identities=16%  Similarity=0.113  Sum_probs=236.7

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ....++.+|..+...|++++|+..|+++            +..+|+++.++..+|.++...|++++|+..++++++.+|.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~   87 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAV------------CQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   87 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC
Confidence            4456778999999999999999999996            5889999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH--------------HH-HHhhhCCHHHHHHHHHHHHhh
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV--------------GL-ECGLTNNARLASKFFDLALSI  175 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~  175 (342)
                      ++.++..+|.++...|++++|+..+++++...|.+...+..+              +. ++...|++++|+..++++++.
T Consensus        88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  167 (327)
T 3cv0_A           88 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM  167 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999988877776              66 688999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701         176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN  255 (342)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (342)
                      .|.++.++..+|.++...|++++|+..++++++..|.+                                    ..++..
T Consensus       168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~  211 (327)
T 3cv0_A          168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD------------------------------------AQLWNK  211 (327)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------------------------------------HHHHHH
Confidence            99999999999999999999999999999999999888                                    589999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC------------chhHHhH
Q psy3701         256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD------------DSFATTM  323 (342)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~  323 (342)
                      +|.++...|++++|+..++++++..|++..++..+|.++...|++++|+.+|+++++..|+            ++.++..
T Consensus       212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  291 (327)
T 3cv0_A          212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF  291 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999            7889999


Q ss_pred             HHHHHHHhhh
Q psy3701         324 LSYVIEQLIE  333 (342)
Q Consensus       324 l~~~~~~~~~  333 (342)
                      ++.++...++
T Consensus       292 l~~~~~~~g~  301 (327)
T 3cv0_A          292 FRMLLNVMNR  301 (327)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHhcCC
Confidence            9998877653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-32  Score=215.09  Aligned_cols=201  Identities=13%  Similarity=0.016  Sum_probs=179.7

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL  154 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  154 (342)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh-----------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh
Q psy3701         155 ECGLT-----------NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE  223 (342)
Q Consensus       155 ~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  223 (342)
                      ++...           |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ ++          
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~----------  150 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT----------  150 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC----------
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc----------
Confidence            99999           999999999999999999999999999999999999999999999999999 65          


Q ss_pred             hHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHH
Q psy3701         224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSA  303 (342)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  303 (342)
                                                +.++.++|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus       151 --------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A  204 (217)
T 2pl2_A          151 --------------------------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA  204 (217)
T ss_dssp             --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred             --------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence                                      689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy3701         304 VNYFHKTMA  312 (342)
Q Consensus       304 ~~~~~~al~  312 (342)
                      +..|+++..
T Consensus       205 ~~~~~~~~~  213 (217)
T 2pl2_A          205 ARAAALEHH  213 (217)
T ss_dssp             ---------
T ss_pred             HHHHHHHhh
Confidence            999998754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=100.00  E-value=2.1e-32  Score=222.24  Aligned_cols=252  Identities=17%  Similarity=0.120  Sum_probs=225.4

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      +..+++..|..+...|++++|+..|+++            ++.+|+++.++..+|.++...|++++|+..++++++ .|.
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~------------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~   68 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKL------------EAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVN   68 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHH------------HHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHH------------HHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC
Confidence            3456778999999999999999999996            588999999999999999999999999999999999 444


Q ss_pred             c----HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         111 F----LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       111 ~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      +    ..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus        69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  148 (272)
T 3u4t_A           69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL  148 (272)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            4    445999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-  265 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-  265 (342)
                      |...+..+++++|+..|+++++..|.+                                    ..++..+|.++...|+ 
T Consensus       149 ~~~~~~~~~~~~A~~~~~~a~~~~p~~------------------------------------~~~~~~~~~~~~~~~~~  192 (272)
T 3u4t_A          149 GQAYYYNKEYVKADSSFVKVLELKPNI------------------------------------YIGYLWRARANAAQDPD  192 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccc------------------------------------hHHHHHHHHHHHHcCcc
Confidence            955555679999999999999999988                                    5899999999999999 


Q ss_pred             --HHHHHHHHHHHHhhC---CCc-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         266 --YEEALEFHKQALVVA---PMK-----ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       266 --~~~A~~~~~~al~~~---~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                        +++|+..++++++..   |+.     ..++..+|.++...|++++|+.+|+++++++|+++.++..++.+....
T Consensus       193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred             hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence              999999999999886   442     368899999999999999999999999999999999999988776543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.1e-31  Score=221.17  Aligned_cols=250  Identities=14%  Similarity=0.113  Sum_probs=238.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc-
Q psy3701          48 RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN-  126 (342)
Q Consensus        48 ~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-  126 (342)
                      +..|...+..+.+++|+..+++++..+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.++...| 
T Consensus        26 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (330)
T 3hym_B           26 VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH  105 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh
Confidence            5677888888999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701         127 EHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA  206 (342)
Q Consensus       127 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  206 (342)
                      ++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|++...+..+|.++...|++++|+..++++
T Consensus       106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  185 (330)
T 3hym_B          106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA  185 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC------
Q psy3701         207 LSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------  280 (342)
Q Consensus       207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------  280 (342)
                      ++..|.+                                    ..++..+|.++...|++++|+..++++++..      
T Consensus       186 l~~~~~~------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  229 (330)
T 3hym_B          186 LSIAPED------------------------------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE  229 (330)
T ss_dssp             HTTCTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred             HHhCCCC------------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence            9999988                                    5899999999999999999999999999986      


Q ss_pred             ---CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         281 ---PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       281 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                         |..+.++..+|.++...|++++|+.+|+++++++|+++.++..++.++...++
T Consensus       230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence               66778999999999999999999999999999999999999999999877553

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-31  Score=215.86  Aligned_cols=240  Identities=12%  Similarity=0.072  Sum_probs=226.6

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      .+..+..+|..+...|++++|+..|++++            ..+ .++.++..+|.++...|++++|+..++++++.+|+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~------------~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~   70 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAW------------ELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE   70 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHH------------Hhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence            46678899999999999999999999974            666 78999999999999999999999999999999887


Q ss_pred             c-------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701         111 F-------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI  183 (342)
Q Consensus       111 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  183 (342)
                      +       +.++..+|.++...|++++|+..+++++...|.        +.++...|++++|+..+++++..+|.++.++
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  142 (258)
T 3uq3_A           71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEA  142 (258)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHH
Confidence            7       789999999999999999999999999999887        5678888999999999999999999999999


Q ss_pred             HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh
Q psy3701         184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL  263 (342)
Q Consensus       184 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  263 (342)
                      ..+|.++...|++++|+..++++++..|.+                                    ..++..+|.++...
T Consensus       143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------~~~~~~l~~~~~~~  186 (258)
T 3uq3_A          143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPED------------------------------------ARGYSNRAAALAKL  186 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCccc------------------------------------HHHHHHHHHHHHHh
Confidence            999999999999999999999999999988                                    58999999999999


Q ss_pred             hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc------cCchhHHhHHHHH
Q psy3701         264 KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK------RDDSFATTMLSYV  327 (342)
Q Consensus       264 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~  327 (342)
                      |++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++      |++..++..+..+
T Consensus       187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999      9888888887765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=100.00  E-value=8e-32  Score=227.12  Aligned_cols=225  Identities=9%  Similarity=0.017  Sum_probs=214.6

Q ss_pred             HhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc-HHHHHHHHHHHhccCCCCchHH
Q psy3701          71 VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE-HDQAMAAYFNAFNLFKGCHLPA  149 (342)
Q Consensus        71 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~  149 (342)
                      +..+|++..+|..+|.++...|++++|+..|++++.++|++..+|..+|.++...|+ +++|+..|+++++++|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            356788899999999999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh
Q psy3701         150 LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL  229 (342)
Q Consensus       150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      ..+|.++..+|++++|+..|++++.++|++..+|..+|.++...|++++|+..|+++++++|.+                
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~----------------  233 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN----------------  233 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC----------------
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------
Confidence            9999999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             hhhHHHHHHHhchhccCCCChHHHHHHHHHHHH-hhhHHHH-----HHHHHHHHhhCCCchHHHHHHHHHHHHhC--ChH
Q psy3701         230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK-LKKYEEA-----LEFHKQALVVAPMKASTFCCIGYIQALTG--DLD  301 (342)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~l~~~~~~~g--~~~  301 (342)
                                          ..+|+++|.++.. .|..++|     +.+|++++.++|++..+|..+|.++...|  +++
T Consensus       234 --------------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~  293 (382)
T 2h6f_A          234 --------------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYP  293 (382)
T ss_dssp             --------------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCH
T ss_pred             --------------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchH
Confidence                                6899999999999 5555777     59999999999999999999999999988  699


Q ss_pred             HHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       302 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      +|++.++++ +.+|+++.++..++.++...+
T Consensus       294 ~a~~~~~~~-~~~p~~~~al~~La~~~~~~~  323 (382)
T 2h6f_A          294 NLLNQLLDL-QPSHSSPYLIAFLVDIYEDML  323 (382)
T ss_dssp             HHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence            999999998 999999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=6.2e-30  Score=215.63  Aligned_cols=287  Identities=16%  Similarity=0.072  Sum_probs=246.1

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      +...++.+|..+...|++++|+..|+++            +..+|+++.++..+|.++...|++++|+..++++++.+|+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~------------l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   69 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAA------------VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD   69 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            3567788999999999999999999996            5889999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC---CCchHHHHH------------HHHHhhhCCHHHHHHHHHHHHhh
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK---GCHLPALYV------------GLECGLTNNARLASKFFDLALSI  175 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~  175 (342)
                      ++.++..+|.++...|++++|+..++++++..|   .+..++..+            |.++...|++++|+..++++++.
T Consensus        70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  149 (359)
T 3ieg_A           70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV  149 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999   877777766            78999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHH
Q psy3701         176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLN  254 (342)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  254 (342)
                      .|.++.++..+|.++...|++++|+..++++++..|.++...  .....++...++. .++...+.. ....|.....+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~  226 (359)
T 3ieg_A          150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF--YKISTLYYQLGDH-ELSLSEVRECLKLDQDHKRCFA  226 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH--HHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCH-HHHHHHHHHHHhhCccchHHHH
Confidence            999999999999999999999999999999999998874110  1111222222222 233333333 334455444433


Q ss_pred             ------------HHHHHHHHhhhHHHHHHHHHHHHhhCCCchH----HHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         255 ------------NLGHVNRKLKKYEEALEFHKQALVVAPMKAS----TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       255 ------------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                                  .+|.++...|++++|+..++++++..|+++.    ++..+|.++...|++++|+..|+++++.+|+++
T Consensus       227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  306 (359)
T 3ieg_A          227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV  306 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence                        4588899999999999999999999999874    466799999999999999999999999999999


Q ss_pred             hHHhHHHHHHHHhh
Q psy3701         319 FATTMLSYVIEQLI  332 (342)
Q Consensus       319 ~~~~~l~~~~~~~~  332 (342)
                      .++..++.++...+
T Consensus       307 ~~~~~~~~~~~~~g  320 (359)
T 3ieg_A          307 NALKDRAEAYLIEE  320 (359)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999887654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.98  E-value=5.8e-30  Score=230.63  Aligned_cols=284  Identities=15%  Similarity=0.051  Sum_probs=228.1

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL  112 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  112 (342)
                      .++..++..+...|++++|+..|+++.            .. |.+..++..+|.++...|++++|+..|+++++.+|.+.
T Consensus       273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~------------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  339 (597)
T 2xpi_A          273 SLYMLKLNKTSHEDELRRAEDYLSSIN------------GL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL  339 (597)
T ss_dssp             HHHHTTSCTTTTHHHHHHHHHHHHTST------------TG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHhh------------cC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH
Confidence            334445778888999999999998863            33 67788888888888888888888888888888888888


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (342)
                      .++..++.++...|++++|+..++++++..|.+..++..+|.++...|++++|++.|+++++..|.+..+|..+|.++..
T Consensus       340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  419 (597)
T 2xpi_A          340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI  419 (597)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701         193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALE  271 (342)
Q Consensus       193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (342)
                      .|++++|+..|+++++..|.+...  .......+...| ..+++...+.. ....|..+.++..+|.++.+.|++++|+.
T Consensus       420 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  496 (597)
T 2xpi_A          420 EGEHDQAISAYTTAARLFQGTHLP--YLFLGMQHMQLG-NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN  496 (597)
T ss_dssp             HTCHHHHHHHHHHHHHTTTTCSHH--HHHHHHHHHHHT-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHH--HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            888888888888888887766310  001111222222 22334444433 33455567899999999999999999999


Q ss_pred             HHHHHHhh------CCCc-hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         272 FHKQALVV------APMK-ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       272 ~~~~al~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      .|+++++.      +|+. ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...+
T Consensus       497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  564 (597)
T 2xpi_A          497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK  564 (597)
T ss_dssp             HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            99999998      5654 7899999999999999999999999999999999999999999887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.98  E-value=1.9e-29  Score=219.53  Aligned_cols=282  Identities=16%  Similarity=0.082  Sum_probs=241.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc
Q psy3701          48 RALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE  127 (342)
Q Consensus        48 ~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  127 (342)
                      +..+..++..+.+++|+..+++++..+|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus        30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  109 (450)
T 2y4t_A           30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK  109 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            34566777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCc---hHHHHH------------HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701         128 HDQAMAAYFNAFNLFKGCH---LPALYV------------GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       128 ~~~A~~~~~~al~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (342)
                      +++|+..|+++++.+|.+.   .++..+            |.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus       110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  189 (450)
T 2y4t_A          110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK  189 (450)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999887   665554            6679999999999999999999999999999999999999


Q ss_pred             hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHH------------HHH
Q psy3701         193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNL------------GHV  259 (342)
Q Consensus       193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l------------~~~  259 (342)
                      .|++++|+..|+++++.+|.+...  .......+...++ ..++...+.. ....|.....+..+            |.+
T Consensus       190 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  266 (450)
T 2y4t_A          190 EGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGD-HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE  266 (450)
T ss_dssp             TTCGGGGHHHHHHHHHHHCSCHHH--HHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCC-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999877311  0111122222222 2334444433 34456566666555            999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCch----HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKA----STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      +...|++++|+..|+++++..|+++    ..+..+|.++...|++++|+..++++++++|+++.++..++.++...+
T Consensus       267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  343 (450)
T 2y4t_A          267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE  343 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence            9999999999999999999999985    478899999999999999999999999999999999999998886654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=8.9e-30  Score=225.18  Aligned_cols=257  Identities=16%  Similarity=0.099  Sum_probs=240.0

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcC
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD  108 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  108 (342)
                      .....+++.+|.++...|++++|+..|+++            +..+|. +.++..+|.++...|++++|+..+++++..+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~------------l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  300 (514)
T 2gw1_A          234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKA------------IELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD  300 (514)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHH------------HHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence            455678888999999999999999999996            578898 9999999999999999999999999999999


Q ss_pred             CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701         109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGV  188 (342)
Q Consensus       109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  188 (342)
                      |.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.
T Consensus       301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  380 (514)
T 2gw1_A          301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE  380 (514)
T ss_dssp             TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH---hhh
Q psy3701         189 IAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK---LKK  265 (342)
Q Consensus       189 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~  265 (342)
                      ++...|++++|+..+++++...|.++                              .......++..+|.++..   .|+
T Consensus       381 ~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~~~~~~  430 (514)
T 2gw1_A          381 ILTDKNDFDKALKQYDLAIELENKLD------------------------------GIYVGIAPLVGKATLLTRNPTVEN  430 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTSS------------------------------SCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhhhccc------------------------------hHHHHHHHHHHHHHHHhhhhhcCC
Confidence            99999999999999999999999884                              111113489999999999   999


Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      +++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+....
T Consensus       431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998887765443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.98  E-value=9.4e-30  Score=226.35  Aligned_cols=285  Identities=14%  Similarity=0.117  Sum_probs=190.5

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK  109 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  109 (342)
                      ..+..++.+|..+...|++++|+..|+++            +..+|+++.++..+|.++...|++++|+..|+++++.+|
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p   90 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYA------------IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP   90 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHH------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHH------------HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            45678889999999999999999999996            588999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH----------------------------------------
Q psy3701         110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA----------------------------------------  149 (342)
Q Consensus       110 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------------------  149 (342)
                      +++.++..+|.++...|++++|+..|+ ++...|+....+                                        
T Consensus        91 ~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~  169 (537)
T 3fp2_A           91 DHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS  169 (537)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH
Confidence            999999999999999999999988884 665555432211                                        


Q ss_pred             ----------------------------HHHHH--------HHhhhCCHHHHHHHHHHHHhhCCCChH-------HHHHH
Q psy3701         150 ----------------------------LYVGL--------ECGLTNNARLASKFFDLALSIAHEDPF-------VIHEM  186 (342)
Q Consensus       150 ----------------------------~~l~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l  186 (342)
                                                  ..++.        .....|++++|+..++++++..|+++.       ++..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  249 (537)
T 3fp2_A          170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT  249 (537)
T ss_dssp             HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred             HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence                                        00111        111123566666666666666666644       35555


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhh
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      |.++...|++++|+..++++++.+|...   ........+...++ ..++...+.. ....|..+.++..+|.++...|+
T Consensus       250 g~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (537)
T 3fp2_A          250 GIFHFLKNNLLDAQVLLQESINLHPTPN---SYIFLALTLADKEN-SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD  325 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHH---HHHHHHHHTCCSSC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhcC-HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Confidence            6666666666666666666666665410   00000011111111 1222222222 23344556677777777777777


Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         266 YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      +++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.++...
T Consensus       326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  391 (537)
T 3fp2_A          326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR  391 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            777777777777777777777777777777777777777777777777777777777776666543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=3.1e-29  Score=223.03  Aligned_cols=250  Identities=14%  Similarity=0.081  Sum_probs=230.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      ..++..+|.++...|++++|+..|+++            +..+|+ +.++..+|.++...|++++|+..+++++..+|++
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~------------~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  309 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQES------------INLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY  309 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHH------------HhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC
Confidence            456778999999999999999999996            578898 9999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      +.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++.
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT  389 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh--------
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL--------  263 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  263 (342)
                      ..|++++|+..|+++++..|.+.                              ........+..+|.++...        
T Consensus       390 ~~g~~~~A~~~~~~a~~~~~~~~------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~  439 (537)
T 3fp2_A          390 DRGDFDTAIKQYDIAKRLEEVQE------------------------------KIHVGIGPLIGKATILARQSSQDPTQL  439 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHCS------------------------------SCSSTTHHHHHHHHHHHHHHTC----C
T ss_pred             HhCCHHHHHHHHHHHHHcCCcch------------------------------hhHHHHHHHHHHHHHHHHHhhccchhh
Confidence            99999999999999999999874                              1111234567788999999        


Q ss_pred             --hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701         264 --KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML  324 (342)
Q Consensus       264 --g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  324 (342)
                        |++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++++.|+++.....+
T Consensus       440 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  502 (537)
T 3fp2_A          440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT  502 (537)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence              9999999999999999999999999999999999999999999999999999988765544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.97  E-value=2.4e-30  Score=202.66  Aligned_cols=197  Identities=16%  Similarity=0.088  Sum_probs=176.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      ...++.+|.++...|++++|+..|+++            ++.+|+++.+++.+|.++...|++++|+..|+++++++|++
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~a------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~   72 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERA------------LKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY   72 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHH------------HTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            456778999999999999999999996            59999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHhh-----------ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh
Q psy3701         112 LPAWLMYGHSFAVE-----------NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP  180 (342)
Q Consensus       112 ~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  180 (342)
                      +.++..+|.++...           |++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++ +++
T Consensus        73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~  151 (217)
T 2pl2_A           73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP  151 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence            99999999999999           999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701         181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN  260 (342)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  260 (342)
                      .++..+|.++...|++++|+..|+++++.+|++                                    ..++..+|.++
T Consensus       152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~------------------------------------~~~~~~la~~~  195 (217)
T 2pl2_A          152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKD------------------------------------LDLRVRYASAL  195 (217)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------hHHHHHHHHHH
Confidence            999999999999999999999999999999998                                    58999999999


Q ss_pred             HHhhhHHHHHHHHHHHH
Q psy3701         261 RKLKKYEEALEFHKQAL  277 (342)
Q Consensus       261 ~~~g~~~~A~~~~~~al  277 (342)
                      ...|++++|+..|+++-
T Consensus       196 ~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          196 LLKGKAEEAARAAALEH  212 (217)
T ss_dssp             TC---------------
T ss_pred             HHccCHHHHHHHHHHHh
Confidence            99999999999998864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-29  Score=224.13  Aligned_cols=217  Identities=16%  Similarity=0.062  Sum_probs=143.9

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      +.++..+|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  315 (514)
T 2gw1_A          237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF  315 (514)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH
Confidence            344555566666666666666666666666666 5566666666666666666666666666666666666666666666


Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEAL  270 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~  270 (342)
                      ..|++++|+..++++++..|.+...  .......+...+ ...++...+.. ....|....++..+|.++...|++++|+
T Consensus       316 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  392 (514)
T 2gw1_A          316 ILQNYDQAGKDFDKAKELDPENIFP--YIQLACLAYREN-KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKAL  392 (514)
T ss_dssp             HTTCTTHHHHHHHHHHHTCSSCSHH--HHHHHHHTTTTT-CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhChhhHHH--HHHHHHHHHHcC-CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHH
Confidence            6666666666666666666655310  000001111112 22233333333 3345556678888888888888888888


Q ss_pred             HHHHHHHhhCCCchH------HHHHHHHHHHH---hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         271 EFHKQALVVAPMKAS------TFCCIGYIQAL---TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       271 ~~~~~al~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ..++++++..|+++.      ++..+|.++..   .|++++|+..|+++++.+|+++.++..++.++...+
T Consensus       393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  463 (514)
T 2gw1_A          393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE  463 (514)
T ss_dssp             HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence            888888888877754      88888888888   888888888888888888888888888888876654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=1.7e-30  Score=220.18  Aligned_cols=246  Identities=14%  Similarity=0.110  Sum_probs=215.7

Q ss_pred             HHHHhhccHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH
Q psy3701          40 RVYEALENRALAAD-CYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA  114 (342)
Q Consensus        40 ~~~~~~~~~~~A~~-~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  114 (342)
                      .++...|+|++|+. .|++++            ...|.+    ...++.+|.++...|++++|+..|+++++.+|.++.+
T Consensus        33 ~~~~~~~~~~~a~~~~~~~a~------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  100 (368)
T 1fch_A           33 EAHPWLSDYDDLTSATYDKGY------------QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA  100 (368)
T ss_dssp             -------------CHHHHCCC------------CCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred             hhhHHHHHHHHHHhhhhhHHH------------hcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            36677789999998 888863            666665    4568999999999999999999999999999999999


Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHH----------
Q psy3701         115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIH----------  184 (342)
Q Consensus       115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------  184 (342)
                      +..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.+...+.          
T Consensus       101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (368)
T 1fch_A          101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG  180 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999877664          


Q ss_pred             ------HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701         185 ------EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH  258 (342)
Q Consensus       185 ------~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  258 (342)
                            .++.++ ..|++++|+..++++++..|...                                  .+.++..+|.
T Consensus       181 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~----------------------------------~~~~~~~l~~  225 (368)
T 1fch_A          181 LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI----------------------------------DPDVQCGLGV  225 (368)
T ss_dssp             -----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC----------------------------------CHHHHHHHHH
T ss_pred             ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc----------------------------------cHHHHHHHHH
Confidence                  466666 99999999999999999999831                                  1579999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.++...+
T Consensus       226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  299 (368)
T 1fch_A          226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG  299 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=1.4e-30  Score=220.57  Aligned_cols=219  Identities=15%  Similarity=0.108  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      ...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT  144 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCHHHHHHHHHHHHhhCCCChHHHHH----------HHHHHHHhcChhHHHHHHHHHHHhhhh--cCccccccchhhH
Q psy3701         158 LTNNARLASKFFDLALSIAHEDPFVIHE----------MGVIAYQNHNYTVAENCFMEALSKVKQ--LGGEIIADKWEPL  225 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~  225 (342)
                      ..|++++|+..++++++..|++...+..          +|.++...|++++|+..++++++..|.  +            
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------  212 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID------------  212 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC------------
T ss_pred             ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC------------
Confidence            9999999999999999999886665554          499999999999999999999999988  5            


Q ss_pred             HHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701         226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN  305 (342)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  305 (342)
                                              +.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.
T Consensus       213 ------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  268 (365)
T 4eqf_A          213 ------------------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE  268 (365)
T ss_dssp             ------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                                    57999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         306 YFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       306 ~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      .|+++++++|+++.++..++.++...+
T Consensus       269 ~~~~al~~~p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          269 AYTRALEIQPGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            999999999999999999999987764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.97  E-value=1.1e-28  Score=201.55  Aligned_cols=238  Identities=15%  Similarity=0.051  Sum_probs=210.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--C
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--D  108 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~  108 (342)
                      .....+.++++|...|+++.|+..++..               +|....++..++..+...++.++|++.+++++..  +
T Consensus        33 ~~e~~~~l~r~yi~~g~~~~al~~~~~~---------------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~   97 (291)
T 3mkr_A           33 DVERDVFLYRAYLAQRKYGVVLDEIKPS---------------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVD   97 (291)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHSCTT---------------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCC
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHhccc---------------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccC
Confidence            3455567899999999999999877552               5667888999999999999999999999998875  6


Q ss_pred             CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH-
Q psy3701         109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG-  187 (342)
Q Consensus       109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-  187 (342)
                      |+++.+++.+|.++...|++++|+..+++     |.+..++..+|.++..+|++++|++.++++++.+|++.......+ 
T Consensus        98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~  172 (291)
T 3mkr_A           98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW  172 (291)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence            99999999999999999999999999988     788899999999999999999999999999999998865544433 


Q ss_pred             -HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701         188 -VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY  266 (342)
Q Consensus       188 -~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (342)
                       .++...|++++|+..|+++++..|.+                                    +.++.++|.++...|++
T Consensus       173 ~~l~~~~~~~~eA~~~~~~~l~~~p~~------------------------------------~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          173 VSLAAGGEKLQDAYYIFQEMADKCSPT------------------------------------LLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHSCCC------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHhCchHHHHHHHHHHHHHHhCCCc------------------------------------HHHHHHHHHHHHHcCCH
Confidence             33445589999999999999998887                                    68999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH-HHHHHHHHHhcccCchhHHhHH
Q psy3701         267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS-AVNYFHKTMALKRDDSFATTML  324 (342)
Q Consensus       267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l  324 (342)
                      ++|+..|+++++.+|+++.++.++|.++...|++++ +..+++++++++|+++.+....
T Consensus       217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            999999999999999999999999999999999976 5789999999999999877643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=1.1e-29  Score=211.47  Aligned_cols=240  Identities=13%  Similarity=0.052  Sum_probs=222.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ...++..+|.++...|++++|+..|+++            +..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus        54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  121 (327)
T 3cv0_A           54 REEAWRSLGLTQAENEKDGLAIIALNHA------------RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ  121 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            4567778999999999999999999996            5789999999999999999999999999999999999999


Q ss_pred             cHHHHHHh--------------hh-HHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh
Q psy3701         111 FLPAWLMY--------------GH-SFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI  175 (342)
Q Consensus       111 ~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  175 (342)
                      +...+..+              +. ++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  201 (327)
T 3cv0_A          122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL  201 (327)
T ss_dssp             TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            98888777              66 7889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701         176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN  255 (342)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (342)
                      .|+++.++..+|.++...|++++|+..++++++..|.+                                    ..++..
T Consensus       202 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------~~~~~~  245 (327)
T 3cv0_A          202 RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY------------------------------------VRVMYN  245 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------------------------------------HHHHHH
Confidence            99999999999999999999999999999999999988                                    589999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCC------------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         256 LGHVNRKLKKYEEALEFHKQALVVAPM------------KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      +|.++...|++++|+..++++++..|+            +..++..+|.++..+|++++|...++++++..|++.
T Consensus       246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~  320 (327)
T 3cv0_A          246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF  320 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence            999999999999999999999999999            789999999999999999999999999988877654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.97  E-value=1.8e-29  Score=201.35  Aligned_cols=218  Identities=16%  Similarity=0.103  Sum_probs=189.3

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      .+..++.+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK  236 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                      ...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.+                       
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------  158 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-----------------------  158 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-----------------------
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-----------------------
Confidence            999999999999999999999999999999999999999999999999999999887                       


Q ss_pred             HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                                   ..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+++++++++|+
T Consensus       159 -------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          159 -------------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             -------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence                         5799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHhHHHHHHHH
Q psy3701         317 DSFATTMLSYVIEQ  330 (342)
Q Consensus       317 ~~~~~~~l~~~~~~  330 (342)
                      ++.++..++.+...
T Consensus       226 ~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          226 HMLALHAKKLLGHH  239 (243)
T ss_dssp             CHHHHHHHTC----
T ss_pred             hHHHHHHHHHHHhh
Confidence            99999888766543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.97  E-value=2.2e-28  Score=196.17  Aligned_cols=217  Identities=17%  Similarity=0.057  Sum_probs=207.1

Q ss_pred             hcCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701          72 DLYPDS-AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL  150 (342)
Q Consensus        72 ~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  150 (342)
                      ..+|.+ +.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++.
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  109 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN  109 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence            456766 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701         151 YVGLECGLTNNARLASKFFDLALS--IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN  228 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      .+|.++...|++++|+..+++++.  ..|.+..++..+|.++...|++++|+..++++++..|.+               
T Consensus       110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------------  174 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ---------------  174 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc---------------
Confidence            999999999999999999999999  888889999999999999999999999999999999887               


Q ss_pred             hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701         229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                                           ..++..+|.++...|++++|+..++++++..|.+...+..++.++...|++++|..+++
T Consensus       175 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  233 (252)
T 2ho1_A          175 ---------------------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL  233 (252)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence                                 58999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccCchhHHhHH
Q psy3701         309 KTMALKRDDSFATTML  324 (342)
Q Consensus       309 ~al~~~p~~~~~~~~l  324 (342)
                      ++++..|+++.....+
T Consensus       234 ~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          234 QLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHHHCTTSHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHH
Confidence            9999999999876654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.97  E-value=4.7e-28  Score=190.62  Aligned_cols=217  Identities=15%  Similarity=0.087  Sum_probs=206.3

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY  151 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  151 (342)
                      +..|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|.+..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A            2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh-CCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701         152 VGLECGLT-NNARLASKFFDLALS--IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN  228 (342)
Q Consensus       152 l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      +|.++... |++++|+..+++++.  ..|.+..++..+|.++...|++++|+..++++++..|.+               
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------  146 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF---------------  146 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------
Confidence            99999999 999999999999999  667778999999999999999999999999999999887               


Q ss_pred             hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701         229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP-MKASTFCCIGYIQALTGDLDSAVNYF  307 (342)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~  307 (342)
                                           ..++..+|.++...|++++|+..++++++..| .+...+..++.++...|+.++|..++
T Consensus       147 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  205 (225)
T 2vq2_A          147 ---------------------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE  205 (225)
T ss_dssp             ---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence                                 58999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHhcccCchhHHhHH
Q psy3701         308 HKTMALKRDDSFATTML  324 (342)
Q Consensus       308 ~~al~~~p~~~~~~~~l  324 (342)
                      +.+.+.+|+++.+...+
T Consensus       206 ~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          206 AQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHh
Confidence            99999999999887665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=1e-27  Score=209.89  Aligned_cols=295  Identities=15%  Similarity=0.074  Sum_probs=199.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHhc-----
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGAL-------------------------------LADLFKLAHELVDL-----   73 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-------------------------------~~~a~~~~~~~~~~-----   73 (342)
                      ..+.++..+|.++..+|++++|++.|++++                               +++|...+++++..     
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            345677788999999999999999998874                               13344444444332     


Q ss_pred             ---CCCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh---ccHHHHHHHHHHHhccCCCC
Q psy3701          74 ---YPDSAIAWYAVGCYYYLIG--RSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE---NEHDQAMAAYFNAFNLFKGC  145 (342)
Q Consensus        74 ---~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~  145 (342)
                         .+..+.++..+|.++...|  ++++|+.+|+++++++|+++.++..++.++...   ++.++|+..++++++++|.+
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence               2233455555555444432  455666666666666666666666655554332   34455666666666666666


Q ss_pred             chHHHHHHHHHhh----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701         146 HLPALYVGLECGL----TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK  221 (342)
Q Consensus       146 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  221 (342)
                      ..++..+|..+..    .+++++|++.+++++..+|+++.++..+|.++...|++++|+..++++++..|++.       
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------  281 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA-------  281 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-------
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH-------
Confidence            6666555554433    35677888888888888898999999999999999999999999999999999874       


Q ss_pred             hhhHHHHhhhh-------------------------HHHHHHHhch-hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy3701         222 WEPLLNNLGHK-------------------------AEDKVKQLGG-EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQ  275 (342)
Q Consensus       222 ~~~~~~~~~~~-------------------------~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  275 (342)
                        .++..+|..                         ...+...+.. ....|....++..+|.++...|++++|+.+|++
T Consensus       282 --~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k  359 (472)
T 4g1t_A          282 --YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK  359 (472)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence              222222211                         1223333333 345667778899999999999999999999999


Q ss_pred             HHhhCCCchH---HHHHHHHH-HHHhCChHHHHHHHHHHHhcc------------------------cCchhHHhHHHHH
Q psy3701         276 ALVVAPMKAS---TFCCIGYI-QALTGDLDSAVNYFHKTMALK------------------------RDDSFATTMLSYV  327 (342)
Q Consensus       276 al~~~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~l~~~  327 (342)
                      +++..|++..   ++..+|.+ ....|++++|+.+|++++++.                        |+++.++..||.+
T Consensus       360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~  439 (472)
T 4g1t_A          360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL  439 (472)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999887653   45666654 457899999999999998775                        5556677777777


Q ss_pred             HHHhhh
Q psy3701         328 IEQLIE  333 (342)
Q Consensus       328 ~~~~~~  333 (342)
                      +...++
T Consensus       440 ~~~~g~  445 (472)
T 4g1t_A          440 QELNEK  445 (472)
T ss_dssp             HHHHHH
T ss_pred             HHHcCC
Confidence            766554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.97  E-value=9.3e-29  Score=197.13  Aligned_cols=224  Identities=16%  Similarity=0.105  Sum_probs=188.4

Q ss_pred             hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      .....+..++.+|..+...|++++|+..|+++            +..+|.++.++..+|.++...|++++|+..++++++
T Consensus        18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   85 (243)
T 2q7f_A           18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKA------------IEENKEDAIPYINFANLLSSVNELERALAFYDKALE   85 (243)
T ss_dssp             ------------------------CCTTHHHH------------HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHH------------HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44566778888999999999999999999996            588999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      .+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|+++.++..+
T Consensus        86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  165 (243)
T 2q7f_A           86 LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQF  165 (243)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY  266 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (342)
                      |.++...|++++|+..++++++..|.+                                    ..++..+|.++...|++
T Consensus       166 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~la~~~~~~~~~  209 (243)
T 2q7f_A          166 GMCLANEGMLDEALSQFAAVTEQDPGH------------------------------------ADAFYNAGVTYAYKENR  209 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccc------------------------------------HHHHHHHHHHHHHccCH
Confidence            999999999999999999999999887                                    58999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC
Q psy3701         267 EEALEFHKQALVVAPMKASTFCCIGYIQALTG  298 (342)
Q Consensus       267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  298 (342)
                      ++|+..++++++.+|++..++..++.+....|
T Consensus       210 ~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          210 EKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            99999999999999999999998887765544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.97  E-value=2.6e-28  Score=213.02  Aligned_cols=214  Identities=16%  Similarity=0.095  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh-HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHH
Q psy3701          60 LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRS-DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNA  138 (342)
Q Consensus        60 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  138 (342)
                      .++++..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|+++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34555666667788999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             hccCCCCchHHHHHHHHHhhh---------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--------cChhHHHH
Q psy3701         139 FNLFKGCHLPALYVGLECGLT---------NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--------HNYTVAEN  201 (342)
Q Consensus       139 l~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~  201 (342)
                      ++++|+ ..++..+|.++...         |++++|+..|+++++.+|+++.+|..+|.++...        |++++|+.
T Consensus       164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            999999 68999999999999         9999999999999999999999999999999999        99999999


Q ss_pred             HHHHHHHhhh---hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701         202 CFMEALSKVK---QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV  278 (342)
Q Consensus       202 ~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  278 (342)
                      .|+++++++|   .+                                    +.++.++|.++...|++++|+..|+++++
T Consensus       243 ~~~~al~~~p~~~~~------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~  286 (474)
T 4abn_A          243 AYAQAEKVDRKASSN------------------------------------PDLHLNRATLHKYEESYGEALEGFSQAAA  286 (474)
T ss_dssp             HHHHHHHHCGGGGGC------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcccC------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999   66                                    68999999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         279 VAPMKASTFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       279 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                      .+|++..++..++.++...|++++|+..+.+.
T Consensus       287 l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          287 LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999877554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.97  E-value=1.2e-28  Score=200.33  Aligned_cols=249  Identities=15%  Similarity=0.067  Sum_probs=214.9

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH
Q psy3701          38 KGRVYEALENRALAADCYKGALLADLFKLAHELVDL----YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLP  113 (342)
Q Consensus        38 ~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  113 (342)
                      ++......|++++|+..|+++            +..    +|.++.+++.+|.++...|++++|+.+|++++..+|.++.
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   78 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQI------------LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE   78 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHH------------HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             eeeccCccchHHHHHHHHHHH------------HhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence            455556678999999999996            354    3567899999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701         114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN  193 (342)
Q Consensus       114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (342)
                      ++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|+++......+.. ...
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~  157 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK  157 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999998776666544 677


Q ss_pred             cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q psy3701         194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFH  273 (342)
Q Consensus       194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  273 (342)
                      |++++|+..+++++...|.+.                                    .. ..++..+...++.++|+..+
T Consensus       158 ~~~~~A~~~~~~~~~~~~~~~------------------------------------~~-~~~~~~~~~~~~~~~a~~~~  200 (275)
T 1xnf_A          158 LDEKQAKEVLKQHFEKSDKEQ------------------------------------WG-WNIVEFYLGNISEQTLMERL  200 (275)
T ss_dssp             HCHHHHHHHHHHHHHHSCCCS------------------------------------TH-HHHHHHHTTSSCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCcch------------------------------------HH-HHHHHHHHHhcCHHHHHHHH
Confidence            999999999999999888773                                    33 44777788888999999999


Q ss_pred             HHHHhhCCCc----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhhcCC
Q psy3701         274 KQALVVAPMK----ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIEESP  336 (342)
Q Consensus       274 ~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  336 (342)
                      ++++...|..    +.++..+|.++...|++++|+.+|+++++.+|++...+...-.-+.++.+...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~  267 (275)
T 1xnf_A          201 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQD  267 (275)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC--
T ss_pred             HHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHH
Confidence            9998877643    68899999999999999999999999999999887655444444455544443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.96  E-value=5.9e-28  Score=184.25  Aligned_cols=171  Identities=15%  Similarity=0.154  Sum_probs=100.1

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      +.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555666666666


Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE  271 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (342)
                      ..++++.|+..+.+++...|.+                                    ..++..+|.++...|++++|+.
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~------------------------------------~~~~~~lg~~~~~~g~~~~A~~  128 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVY------------------------------------ADAYYKLGLVYDSMGEHDKAIE  128 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccc------------------------------------hHHHHHHHHHHHHhCCchhHHH
Confidence            6666666666666666665555                                    3555666666666666666666


Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      .|+++++.+|+++.++..+|.++..+|++++|+.+|+++++++|+++
T Consensus       129 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          129 AYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            66666666666666666666666666666666666666666666543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.96  E-value=5.6e-28  Score=184.36  Aligned_cols=174  Identities=14%  Similarity=0.096  Sum_probs=168.4

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701          76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE  155 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  155 (342)
                      +++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|....++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701         156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED  235 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                      +...++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|.+                      
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------  140 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----------------------  140 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----------------------
Confidence            9999999999999999999999999999999999999999999999999999999998                      


Q ss_pred             HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701         236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS  285 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  285 (342)
                                    +.++.++|.++..+|++++|+..|+++++.+|+++.
T Consensus       141 --------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          141 --------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             --------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence                          589999999999999999999999999999997653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-27  Score=192.29  Aligned_cols=214  Identities=12%  Similarity=-0.025  Sum_probs=202.0

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------ch
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------HL  147 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~  147 (342)
                      +..+..+..+|.+++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|..       ..
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            3467899999999999999999999999999999 889999999999999999999999999999998876       68


Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN  227 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  227 (342)
                      ++..+|.++...|++++|+..+++++...|.        +.++...|++++|+..+++++..+|..              
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------  138 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEK--------------  138 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHH--------------
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcch--------------
Confidence            8899999999999999999999999999986        567888899999999999999999988              


Q ss_pred             HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701         228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF  307 (342)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  307 (342)
                                            ..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|
T Consensus       139 ----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          139 ----------------------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC  196 (258)
T ss_dssp             ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                                  5899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         308 HKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       308 ~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      +++++.+|+++.++..++.++...++
T Consensus       197 ~~al~~~~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          197 NKAIEKDPNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999876543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=3.9e-27  Score=206.22  Aligned_cols=291  Identities=10%  Similarity=-0.030  Sum_probs=209.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHhcCCCcHH
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGAL--------------------------------LADLFKLAHELVDLYPDSAI   79 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~--------------------------------~~~a~~~~~~~~~~~p~~~~   79 (342)
                      ...+..+|.+|...|++++|+..|++++                                +++|+..+++++..+|+++.
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~  173 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE  173 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence            3456679999999999999999888764                                36899999999999999999


Q ss_pred             HHHHHHHHHHH---hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          80 AWYAVGCYYYL---IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        80 ~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      ++..+|.++..   .++.++|+..++++++++|+++.++..+|..+..    .|++++|+..+++++..+|....++..+
T Consensus       174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~l  253 (472)
T 4g1t_A          174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA  253 (472)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence            99999988665   4677899999999999999999999888876654    4678899999999999999999999999


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-------------------cChhHHHHHHHHHHHhhhhc
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN-------------------HNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~al~~~~~~  213 (342)
                      |.++...|++++|+..++++++..|+++.++..+|.+|...                   +.+++|+..++++++.+|..
T Consensus       254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  333 (472)
T 4g1t_A          254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL  333 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence            99999999999999999999999999999999999988643                   34678999999999999887


Q ss_pred             CccccccchhhHHHHhhhhHHHHHHHhchh-ccCCCC---hHHHHHHHHHH-HHhhhHHHHHHHHHHHHhh---------
Q psy3701         214 GGEIIADKWEPLLNNLGHKAEDKVKQLGGE-IIADKW---EPLLNNLGHVN-RKLKKYEEALEFHKQALVV---------  279 (342)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~---------  279 (342)
                      .....  .....+...++ .+++...+.+. ...+..   ..++..+|.+. ...|++++|+..|++++++         
T Consensus       334 ~~~~~--~lg~~~~~~~~-~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~  410 (472)
T 4g1t_A          334 FRVCS--ILASLHALADQ-YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK  410 (472)
T ss_dssp             CCCHH--HHHHHHHHTTC-HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             hhhhh--hHHHHHHHhcc-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence            41111  11122222332 23444444432 222221   23456677554 5789999999999988865         


Q ss_pred             ---------------CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         280 ---------------APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       280 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                                     +|+++.++..+|.++...|++++|+++|++++++.|.+|.+...+|
T Consensus       411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence                           4566788999999999999999999999999999999999888776

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.96  E-value=5.7e-27  Score=191.38  Aligned_cols=238  Identities=8%  Similarity=-0.064  Sum_probs=207.9

Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHh
Q psy3701          40 RVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS-AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMY  118 (342)
Q Consensus        40 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  118 (342)
                      +..+..|+|.+|+...++.            ...+|++ .+....++.+|...|++++|+..++.   .+|....++..+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~------------~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~l   71 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRV------------KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMF   71 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHS------------CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc------------ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHH
Confidence            4456779999999988874            3666776 46778899999999999999998866   256667888899


Q ss_pred             hhHHHhhccHHHHHHHHHHHhcc--CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701         119 GHSFAVENEHDQAMAAYFNAFNL--FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY  196 (342)
Q Consensus       119 a~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (342)
                      +..+...|+.++|++.+++++..  +|+++.+++.+|.++...|++++|++.+++     |+++.++..+|.++..+|++
T Consensus        72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~  146 (291)
T 3mkr_A           72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRL  146 (291)
T ss_dssp             HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCH
Confidence            99999999999999999999875  699999999999999999999999999998     89999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH--HHHHHhhhHHHHHHHHH
Q psy3701         197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG--HVNRKLKKYEEALEFHK  274 (342)
Q Consensus       197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~  274 (342)
                      ++|+..++++++.+|++                                    .......+  .++...|++++|+..|+
T Consensus       147 ~~A~~~l~~~~~~~p~~------------------------------------~~~~l~~a~~~l~~~~~~~~eA~~~~~  190 (291)
T 3mkr_A          147 DLARKELKKMQDQDEDA------------------------------------TLTQLATAWVSLAAGGEKLQDAYYIFQ  190 (291)
T ss_dssp             HHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCc------------------------------------HHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            99999999999998876                                    22222222  33345699999999999


Q ss_pred             HHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         275 QALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       275 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      ++++..|+++.++.++|.++..+|++++|+..|+++++.+|+++.++.+++.++...++
T Consensus       191 ~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999988776543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.96  E-value=1.4e-26  Score=187.97  Aligned_cols=229  Identities=18%  Similarity=0.177  Sum_probs=211.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChHHHHHHHHHHhh
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYL----IGRSDPARRFLGKATS  106 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~  106 (342)
                      +...++.+|..+...|++++|+..|+++.            +  |+++.+++.+|.++..    .+++++|+.+|+++++
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~------------~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~   70 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC------------D--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   70 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHH------------H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence            45677889999999999999999999973            3  7889999999999999    9999999999999999


Q ss_pred             cCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh----hCCHHHHHHHHHHHHhhCCC
Q psy3701         107 LDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL----TNNARLASKFFDLALSIAHE  178 (342)
Q Consensus       107 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~  178 (342)
                      .+  ++.++..+|.++..    .+++++|+..|+++++..  ++.++..+|.++..    .+++++|+.+|+++++..  
T Consensus        71 ~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--  144 (273)
T 1ouv_A           71 LN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--  144 (273)
T ss_dssp             TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred             CC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Confidence            86  78999999999999    999999999999999874  78899999999999    999999999999999875  


Q ss_pred             ChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701         179 DPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN  254 (342)
Q Consensus       179 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (342)
                      ++.++..+|.++..    .+++++|+.+|+++++..  +                                    +.++.
T Consensus       145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~------------------------------------~~a~~  186 (273)
T 1ouv_A          145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--D------------------------------------SPGCF  186 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C------------------------------------HHHHH
T ss_pred             cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C------------------------------------HHHHH
Confidence            68899999999999    999999999999999874  2                                    46889


Q ss_pred             HHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH----hCChHHHHHHHHHHHhcccCchh
Q psy3701         255 NLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL----TGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       255 ~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      .+|.++..    .+++++|+.+|+++++..|  +.++..+|.++..    .+++++|+.+|+++++..|++..
T Consensus       187 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          187 NAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             HHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence            99999999    9999999999999999866  7889999999999    99999999999999999886654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.96  E-value=1.2e-26  Score=186.11  Aligned_cols=212  Identities=17%  Similarity=0.094  Sum_probs=200.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK  109 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  109 (342)
                      ....+++.+|..+...|++++|+..|+++            +..+|.++.++..+|.++...|++++|+..++++++.+|
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  102 (252)
T 2ho1_A           35 EARDAYIQLGLGYLQRGNTEQAKVPLRKA------------LEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS  102 (252)
T ss_dssp             HHHHHHHHHHHHHHHTTCTGGGHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHH------------HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            34778889999999999999999999996            477999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhhHHHhhccHHHHHHHHHHHhc--cCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701         110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFN--LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG  187 (342)
Q Consensus       110 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  187 (342)
                      .+..++..+|.++...|++++|+..+++++.  ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|
T Consensus       103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la  182 (252)
T 2ho1_A          103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA  182 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            9999999999999999999999999999999  78888889999999999999999999999999999999999999999


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      .++...|++++|+..++++++..|.+                                    ...+..++.++...|+++
T Consensus       183 ~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~g~~~  226 (252)
T 2ho1_A          183 DLLYKEREYVPARQYYDLFAQGGGQN------------------------------------ARSLLLGIRLAKVFEDRD  226 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSCCC------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCc------------------------------------HHHHHHHHHHHHHccCHH
Confidence            99999999999999999999998877                                    578999999999999999


Q ss_pred             HHHHHHHHHHhhCCCchHHHHH
Q psy3701         268 EALEFHKQALVVAPMKASTFCC  289 (342)
Q Consensus       268 ~A~~~~~~al~~~~~~~~~~~~  289 (342)
                      +|..+++++++..|+++.....
T Consensus       227 ~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          227 TAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             HHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999876543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.96  E-value=7.7e-27  Score=184.34  Aligned_cols=213  Identities=11%  Similarity=-0.020  Sum_probs=191.7

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC-CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK-LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      .+.++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|.+..++..+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   82 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK   82 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            456779999999999999999999999999999999 8899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCCh-------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh--cCccccccchh
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDP-------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ--LGGEIIADKWE  223 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~  223 (342)
                      |.++...|++++|+..++++++.+|+++       .++..+|.++...|++++|+..|+++++.+|+  +          
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----------  152 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK----------  152 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH----------
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc----------
Confidence            9999999999999999999999999999       66999999999999999999999999999999  7          


Q ss_pred             hHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHH
Q psy3701         224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSA  303 (342)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  303 (342)
                                                +.++.++|.++...|+     ..++++..+.+.....+  .+......+.+++|
T Consensus       153 --------------------------~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A  199 (228)
T 4i17_A          153 --------------------------TDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKA  199 (228)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHH
T ss_pred             --------------------------HHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHH
Confidence                                      5899999999987765     34566677766665443  44556677889999


Q ss_pred             HHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         304 VNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       304 ~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      +.+|+++++++|+++.+...++.+..
T Consensus       200 ~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          200 VDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            99999999999999999998887753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.96  E-value=3e-26  Score=189.23  Aligned_cols=224  Identities=14%  Similarity=0.106  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------hCCh-------HHHHHHHHHHhh-cCCCcHH
Q psy3701          49 ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYL-------IGRS-------DPARRFLGKATS-LDKLFLP  113 (342)
Q Consensus        49 ~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~a~~-~~~~~~~  113 (342)
                      ++|+..|++            ++..+|.++.+|+.+|..+..       .|++       ++|+..|+++++ ++|++..
T Consensus        33 ~~a~~~~~~------------al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~  100 (308)
T 2ond_A           33 KRVMFAYEQ------------CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML  100 (308)
T ss_dssp             HHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHH------------HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH
Confidence            456666666            568899999999999999874       5886       999999999999 7999999


Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch-HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701         114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL-PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (342)
                      +|..+|.++...|++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+...
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  180 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887 899999999999999999999999999999999888877766544


Q ss_pred             -hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701         193 -NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE  271 (342)
Q Consensus       193 -~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (342)
                       .|++++|+..|+++++..|++                                    +.+|..+|..+...|++++|+.
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~~~~~~~~~g~~~~A~~  224 (308)
T 2ond_A          181 CSKDKSVAFKIFELGLKKYGDI------------------------------------PEYVLAYIDYLSHLNEDNNTRV  224 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTTC------------------------------------HHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCc------------------------------------HHHHHHHHHHHHHCCCHHHHHH
Confidence             799999999999999999988                                    5899999999999999999999


Q ss_pred             HHHHHHhh---CCC-chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhH
Q psy3701         272 FHKQALVV---APM-KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA  320 (342)
Q Consensus       272 ~~~~al~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  320 (342)
                      .|++++..   .|+ ...+|..++..+...|+.++|...++++++..|++...
T Consensus       225 ~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~  277 (308)
T 2ond_A          225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG  277 (308)
T ss_dssp             HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence            99999996   453 67899999999999999999999999999999986643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.96  E-value=2.8e-27  Score=191.89  Aligned_cols=219  Identities=12%  Similarity=0.043  Sum_probs=196.4

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch----HHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL----PALYV  152 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~l  152 (342)
                      +++.++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.++.    ++..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999 454443    37899


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK  232 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  232 (342)
                      |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.+                   
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------------------  141 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-------------------  141 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-------------------
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-------------------
Confidence            9999999999999999999999999999999999999999999999999999999998888                   


Q ss_pred             HHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC---hHHHHHHHHH
Q psy3701         233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD---LDSAVNYFHK  309 (342)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~  309 (342)
                                       ..++..+|......+++++|+..|+++++.+|++..++..+|.++...|+   +++|+..|++
T Consensus       142 -----------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          142 -----------------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence                             58999999444455699999999999999999999999999999999999   9999999999


Q ss_pred             HHhcc---cCc-----hhHHhHHHHHHHHhh
Q psy3701         310 TMALK---RDD-----SFATTMLSYVIEQLI  332 (342)
Q Consensus       310 al~~~---p~~-----~~~~~~l~~~~~~~~  332 (342)
                      ++++.   |+.     ..++..++.++...+
T Consensus       205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (272)
T 3u4t_A          205 LIEVCAPGGAKYKDELIEANEYIAYYYTINR  235 (272)
T ss_dssp             HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence            99986   542     256777777776543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.95  E-value=2.3e-26  Score=200.69  Aligned_cols=205  Identities=14%  Similarity=0.020  Sum_probs=196.0

Q ss_pred             hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH-HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701          91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH-DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF  169 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  169 (342)
                      .+++++++..+++.....|.++.+++.+|.++...|++ ++|+..|+++++.+|.+..++..+|.++...|++++|+..|
T Consensus        81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34577888899999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHHh---------cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701         170 DLALSIAHEDPFVIHEMGVIAYQN---------HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL  240 (342)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (342)
                      +++++.+|+ ..++..+|.++...         |++++|+..|+++++++|.+                           
T Consensus       161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------  212 (474)
T 4abn_A          161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---------------------------  212 (474)
T ss_dssp             HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------------------
T ss_pred             HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---------------------------
Confidence            999999998 79999999999999         99999999999999999998                           


Q ss_pred             chhccCCCChHHHHHHHHHHHHh--------hhHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701         241 GGEIIADKWEPLLNNLGHVNRKL--------KKYEEALEFHKQALVVAP---MKASTFCCIGYIQALTGDLDSAVNYFHK  309 (342)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~  309 (342)
                               ..+|..+|.++...        |++++|+..|+++++.+|   +++.++.++|.++...|++++|+..|++
T Consensus       213 ---------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  283 (474)
T 4abn_A          213 ---------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ  283 (474)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                     58999999999999        999999999999999999   9999999999999999999999999999


Q ss_pred             HHhcccCchhHHhHHHHHHHHhh
Q psy3701         310 TMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       310 al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      +++++|+++.++..++.++..++
T Consensus       284 al~l~p~~~~a~~~l~~~~~~lg  306 (474)
T 4abn_A          284 AAALDPAWPEPQQREQQLLEFLS  306 (474)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998887654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.95  E-value=3.6e-27  Score=202.16  Aligned_cols=292  Identities=16%  Similarity=0.161  Sum_probs=231.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      ...++.+|..+...|++++|+..|+++            +...|.+    ..++..+|.++...|++++|+.++++++.+
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAA------------VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHH------------HhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            446678999999999999999999997            4667877    468899999999999999999999999877


Q ss_pred             ------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC------chHHHHHHHHHhhhCC--------------
Q psy3701         108 ------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------HLPALYVGLECGLTNN--------------  161 (342)
Q Consensus       108 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~--------------  161 (342)
                            .|....++..+|.++...|++++|+..++++++..|..      ..++..+|.++...|+              
T Consensus        77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  156 (406)
T 3sf4_A           77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP  156 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence                  34457789999999999999999999999999987654      3478889999999999              


Q ss_pred             ------HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccc----ccchhhH
Q psy3701         162 ------ARLASKFFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEII----ADKWEPL  225 (342)
Q Consensus       162 ------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~  225 (342)
                            +++|+..+++++.+.      |....++..+|.++...|++++|+..++++++..+..+....    ......+
T Consensus       157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  236 (406)
T 3sf4_A          157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA  236 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence                  999999999998762      334567899999999999999999999999999887642110    0011112


Q ss_pred             HHHhhhhHHHHHHHhch-------hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHH
Q psy3701         226 LNNLGHKAEDKVKQLGG-------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGY  292 (342)
Q Consensus       226 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~  292 (342)
                      +...++. .++...+..       ....+....++..+|.++...|++++|+.+++++++..+..      ..++..+|.
T Consensus       237 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  315 (406)
T 3sf4_A          237 YIFLGEF-ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN  315 (406)
T ss_dssp             HHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCh-HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            2222222 222222222       22222336788899999999999999999999999875443      568889999


Q ss_pred             HHHHhCChHHHHHHHHHHHhcccCch------hHHhHHHHHHHHhhhcCC
Q psy3701         293 IQALTGDLDSAVNYFHKTMALKRDDS------FATTMLSYVIEQLIEESP  336 (342)
Q Consensus       293 ~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~  336 (342)
                      ++...|++++|+.++++++++.+...      .++..++.++...++...
T Consensus       316 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            99999999999999999999999883      567788888888876643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.95  E-value=3.9e-27  Score=202.56  Aligned_cols=278  Identities=15%  Similarity=0.170  Sum_probs=209.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSA----IAWYAVGCYYYLIGRSDPARRFLGKA  104 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a  104 (342)
                      ......++.+|..+...|++++|+..|+++            +...|+++    .++..+|.++...|++++|+.+++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAA------------IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD  112 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHH------------HHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345666778999999999999999999996            46788876    58999999999999999999999999


Q ss_pred             hhc------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc------CCCCchHHHHHHHHHhhhCC-----------
Q psy3701         105 TSL------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL------FKGCHLPALYVGLECGLTNN-----------  161 (342)
Q Consensus       105 ~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~-----------  161 (342)
                      ++.      .|....++..+|.++...|++++|+..+++++..      .|....++..+|.++...|+           
T Consensus       113 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  192 (411)
T 4a1s_A          113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG  192 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence            987      5667889999999999999999999999999998      44556688889999999999           


Q ss_pred             ------HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc----cccchhhH
Q psy3701         162 ------ARLASKFFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI----IADKWEPL  225 (342)
Q Consensus       162 ------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~  225 (342)
                            +++|+..+++++.+.      +....++..+|.++...|++++|+.++++++++.+......    .......+
T Consensus       193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  272 (411)
T 4a1s_A          193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS  272 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence                  999999999998764      23345889999999999999999999999999988763100    00001111


Q ss_pred             HHHhhhhHHHHHHHhch-------hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHH
Q psy3701         226 LNNLGHKAEDKVKQLGG-------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGY  292 (342)
Q Consensus       226 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~  292 (342)
                      +...++. .++...+..       .........++..+|.++...|++++|+.++++++...+..      ..++..+|.
T Consensus       273 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  351 (411)
T 4a1s_A          273 HIFLGQF-EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGN  351 (411)
T ss_dssp             HHTTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHCcCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            1122211 122222221       11112234567777777777778888887777777764332      346777777


Q ss_pred             HHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         293 IQALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       293 ~~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      ++...|++++|+.+|++++++.+....
T Consensus       352 ~~~~~g~~~~A~~~~~~al~~~~~~~~  378 (411)
T 4a1s_A          352 AHSAIGGHERALKYAEQHLQLAXXXXX  378 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhhccc
Confidence            777778888888888877777664443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.95  E-value=1.7e-25  Score=175.97  Aligned_cols=213  Identities=16%  Similarity=0.136  Sum_probs=198.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701          30 MKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK  109 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  109 (342)
                      ....+++.+|..+...|++++|+..|+++            +..+|+++.++..+|.++...|++++|+.++++++..+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~   73 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDA------------LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP   73 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHH------------HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            34567788999999999999999999996            588999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhhHHHhh-ccHHHHHHHHHHHhc--cCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         110 LFLPAWLMYGHSFAVE-NEHDQAMAAYFNAFN--LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       110 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      .+..++..+|.++... |++++|+..++++++  ..|....++..+|.++...|++++|+..++++++..|+++.++..+
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  153 (225)
T 2vq2_A           74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL  153 (225)
T ss_dssp             TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            9999999999999999 999999999999999  5666678899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhh-hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVK-QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      |.++...|++++|+..++++++..| .+                                    ...+..++.++...|+
T Consensus       154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~  197 (225)
T 2vq2_A          154 ARTKMLAGQLGDADYYFKKYQSRVEVLQ------------------------------------ADDLLLGWKIAKALGN  197 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCSCC------------------------------------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCC------------------------------------HHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999 66                                    4778888999999999


Q ss_pred             HHHHHHHHHHHHhhCCCchHHHHHH
Q psy3701         266 YEEALEFHKQALVVAPMKASTFCCI  290 (342)
Q Consensus       266 ~~~A~~~~~~al~~~~~~~~~~~~l  290 (342)
                      +++|..+++.+.+..|+++.+...+
T Consensus       198 ~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          198 AQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            9999999999999999998776544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.95  E-value=6.9e-27  Score=195.06  Aligned_cols=243  Identities=18%  Similarity=0.218  Sum_probs=187.2

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS----AIAWYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      ....++..|..+...|++++|+..|+++            +...|++    ..++..+|.++...|++++|+.++++++.
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   71 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAA------------VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT   71 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHH------------HhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456678999999999999999999997            4668887    47888999999999999999999999988


Q ss_pred             c------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch------HHHHHHHHHhhhCC-------------
Q psy3701         107 L------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL------PALYVGLECGLTNN-------------  161 (342)
Q Consensus       107 ~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~l~~~~~~~~~-------------  161 (342)
                      .      .|....++..+|.++...|++++|+..++++++..|....      ++..+|.++...|+             
T Consensus        72 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  151 (338)
T 3ro2_A           72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF  151 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred             HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence            7      4455778999999999999999999999999998765433      77889999999999             


Q ss_pred             -------HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701         162 -------ARLASKFFDLALSIA------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN  228 (342)
Q Consensus       162 -------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  228 (342)
                             +++|+..+++++...      +....++..+|.++...|++++|+..++++++..+..+.             
T Consensus       152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------  218 (338)
T 3ro2_A          152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------  218 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------
Confidence                   999999999988762      333567899999999999999999999999998877631             


Q ss_pred             hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCChHH
Q psy3701         229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGYIQALTGDLDS  302 (342)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~  302 (342)
                                       .+....++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++
T Consensus       219 -----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  281 (338)
T 3ro2_A          219 -----------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK  281 (338)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             -----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH
Confidence                             00012355556666666666666666666665554332      3455556666666666666


Q ss_pred             HHHHHHHHHhccc
Q psy3701         303 AVNYFHKTMALKR  315 (342)
Q Consensus       303 A~~~~~~al~~~p  315 (342)
                      |+.++++++++.|
T Consensus       282 A~~~~~~a~~~~~  294 (338)
T 3ro2_A          282 AIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.95  E-value=7.9e-27  Score=200.07  Aligned_cols=274  Identities=18%  Similarity=0.080  Sum_probs=206.5

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ...++..+|.++...|++++|+..|++++     .+... ....|..+.++..+|.++...|++++|+.++++++.+.|.
T Consensus        46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           46 LSAIYSQLGNAYFYLHDYAKALEYHHHDL-----TLART-IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHh-ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            35678889999999999999999999974     22221 1224556889999999999999999999999999998765


Q ss_pred             c------HHHHHHhhhHHHhhcc--------------------HHHHHHHHHHHhccC------CCCchHHHHHHHHHhh
Q psy3701         111 F------LPAWLMYGHSFAVENE--------------------HDQAMAAYFNAFNLF------KGCHLPALYVGLECGL  158 (342)
Q Consensus       111 ~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~  158 (342)
                      .      ..++..+|.++...|+                    +++|+..+++++.+.      |....++..+|.++..
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  199 (406)
T 3sf4_A          120 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL  199 (406)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            4      4589999999999999                    999999999998873      3334577889999999


Q ss_pred             hCCHHHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701         159 TNNARLASKFFDLALSIAHEDPF------VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK  232 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  232 (342)
                      .|++++|+..+++++...|....      ++..+|.++...|++++|+..+++++...+......   .....+..++..
T Consensus       200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~  276 (406)
T 3sf4_A          200 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA---VEAQSCYSLGNT  276 (406)
T ss_dssp             HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch---HHHHHHHHHHHH
Confidence            99999999999999988765443      889999999999999999999999999988763111   111222222221


Q ss_pred             ------HHHHHHHhch-------hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC------CchHHHHHHHHH
Q psy3701         233 ------AEDKVKQLGG-------EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MKASTFCCIGYI  293 (342)
Q Consensus       233 ------~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~  293 (342)
                            ..++...+..       ....+....++..+|.++...|++++|+.++++++++.+      ....++..+|.+
T Consensus       277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  356 (406)
T 3sf4_A          277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDL  356 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence                  1222222222       222333467899999999999999999999999998743      335788999999


Q ss_pred             HHHhCChHHHHHHHHHHHhc
Q psy3701         294 QALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       294 ~~~~g~~~~A~~~~~~al~~  313 (342)
                      +...|+...+...+.+....
T Consensus       357 ~~~~g~~~~~~~~~~~~~~~  376 (406)
T 3sf4_A          357 QMVLGLSYSTNNSIMSENTE  376 (406)
T ss_dssp             HHHHHTTSCC----------
T ss_pred             HHHhhHhHHHHHHHHHHHHH
Confidence            99999887665555544433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.95  E-value=9e-27  Score=210.80  Aligned_cols=172  Identities=15%  Similarity=0.083  Sum_probs=104.6

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG  153 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  153 (342)
                      .|++++++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++..++..+|
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666655555566


Q ss_pred             HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701         154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA  233 (342)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
                      .++..+|++++|++.|+++++++|++..++.++|.++..+|++++|+..|+++++++|++                    
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--------------------  144 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF--------------------  144 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------
Confidence            555555555555555555555555555555555555555555555555555555555555                    


Q ss_pred             HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Q psy3701         234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP  281 (342)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  281 (342)
                                      ..++.++|.++...|++++|++.+++++++.|
T Consensus       145 ----------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          145 ----------------PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             ----------------hHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence                            35555555555555555555555555555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.95  E-value=6.4e-26  Score=184.07  Aligned_cols=231  Identities=16%  Similarity=0.149  Sum_probs=201.9

Q ss_pred             hHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          28 SEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        28 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      +.....+++.+|.++...|++++|+..|+++            +..+|.++.++..+|.++...|++++|+.+|+++++.
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQA------------LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHH------------HHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3456788889999999999999999999996            5889999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG  187 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  187 (342)
                      +|.++.++..+|.++...|++++|+..++++++..|++.......+.. ...|++++|+..+++++...|.+...+. ++
T Consensus       107 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~  184 (275)
T 1xnf_A          107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IV  184 (275)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HH
T ss_pred             CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HH
Confidence            999999999999999999999999999999999999988666655544 6679999999999999999998877654 77


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      .++...++.++|+..+++++...|...                                +....++..+|.++...|+++
T Consensus       185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~la~~~~~~g~~~  232 (275)
T 1xnf_A          185 EFYLGNISEQTLMERLKADATDNTSLA--------------------------------EHLSETNFYLGKYYLSLGDLD  232 (275)
T ss_dssp             HHHTTSSCHHHHHHHHHHHCCSHHHHH--------------------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHhccccccc--------------------------------ccccHHHHHHHHHHHHcCCHH
Confidence            778888899999999999998877541                                111478999999999999999


Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701         268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF  307 (342)
Q Consensus       268 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  307 (342)
                      +|+..|+++++.+|++...   .+.++...|++++|++.+
T Consensus       233 ~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          233 SATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            9999999999999977544   477888999999999887

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.95  E-value=1.5e-26  Score=209.36  Aligned_cols=175  Identities=13%  Similarity=0.127  Sum_probs=169.1

Q ss_pred             cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      ..|++++++.++|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+++++++|+++.++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY  266 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (342)
                      |.++..+|++++|+..|+++++++|++                                    ..++.++|.++..+|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~------------------------------------~~a~~~Lg~~~~~~g~~  127 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAF------------------------------------ADAHSNLASIHKDSGNI  127 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999998                                    68999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701         267 EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       267 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  317 (342)
                      ++|+..|+++++++|+++.++.++|.++..+|++++|.+.+++++++.|+.
T Consensus       128 ~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            999999999999999999999999999999999999999999999887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.94  E-value=7.3e-25  Score=172.97  Aligned_cols=209  Identities=14%  Similarity=0.163  Sum_probs=184.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYP-DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ...++.+|.++...|++++|+..|+++            +..+| .+..+++.+|.++...|++++|+.+|+++++.+|+
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   74 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEY------------LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN   74 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH------------HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence            467889999999999999999999996            57787 88899999999999999999999999999999999


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--ChH
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-------LPALYVGLECGLTNNARLASKFFDLALSIAHE--DPF  181 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~  181 (342)
                      ++.++..+|.++...|++++|+..++++++.+|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  154 (228)
T 4i17_A           75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD  154 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence            999999999999999999999999999999999988       66889999999999999999999999999999  999


Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701         182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR  261 (342)
Q Consensus       182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (342)
                      ++..+|.++...|+     ..++++..+.+..                                    ...  ..+....
T Consensus       155 ~~~~l~~~~~~~~~-----~~~~~a~~~~~~~------------------------------------~~~--~~~~~~~  191 (228)
T 4i17_A          155 ALYSLGVLFYNNGA-----DVLRKATPLASSN------------------------------------KEK--YASEKAK  191 (228)
T ss_dssp             HHHHHHHHHHHHHH-----HHHHHHGGGTTTC------------------------------------HHH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHHhcccCC------------------------------------HHH--HHHHHHH
Confidence            99999999987664     4456665555444                                    122  2344456


Q ss_pred             HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q psy3701         262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQA  295 (342)
Q Consensus       262 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  295 (342)
                      ..+.+++|+.+++++++++|+++.+...++.+..
T Consensus       192 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          192 ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            6788999999999999999999999888887653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.94  E-value=6e-26  Score=195.14  Aligned_cols=246  Identities=17%  Similarity=0.089  Sum_probs=191.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc----
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL----  107 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----  107 (342)
                      ..++..+|.++...|++++|+..|++++     .++... ...|....++..+|.++...|++++|+.++++++..    
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-----~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  159 (411)
T 4a1s_A           86 SAIYSQLGNAYFYLGDYNKAMQYHKHDL-----TLAKSM-NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL  159 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHc-cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            4678889999999999999999999974     222111 225667889999999999999999999999999988    


Q ss_pred             --CCCcHHHHHHhhhHHHhhcc-----------------HHHHHHHHHHHhccCC------CCchHHHHHHHHHhhhCCH
Q psy3701         108 --DKLFLPAWLMYGHSFAVENE-----------------HDQAMAAYFNAFNLFK------GCHLPALYVGLECGLTNNA  162 (342)
Q Consensus       108 --~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~~~~  162 (342)
                        .|....++..+|.++...|+                 +++|+..+++++++.+      ....++..+|.++...|++
T Consensus       160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  239 (411)
T 4a1s_A          160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF  239 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence              55667789999999999999                 9999999999988643      2345788899999999999


Q ss_pred             HHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc----cccchhhHHHHhhhh
Q psy3701         163 RLASKFFDLALSIAHEDPF------VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI----IADKWEPLLNNLGHK  232 (342)
Q Consensus       163 ~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~~~~~~  232 (342)
                      ++|+.++++++...+....      ++..+|.++...|++++|+..+++++...+......    .......++...++.
T Consensus       240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  319 (411)
T 4a1s_A          240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF  319 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999998765433      789999999999999999999999999988653111    000111222222222


Q ss_pred             HHHHHHHhc-------hhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch
Q psy3701         233 AEDKVKQLG-------GEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA  284 (342)
Q Consensus       233 ~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  284 (342)
                       .++...+.       .....+....++..+|.++...|++++|+.++++++++.+...
T Consensus       320 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  377 (411)
T 4a1s_A          320 -NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX  377 (411)
T ss_dssp             -HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred             -HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence             22222222       2223344466899999999999999999999999999987544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.94  E-value=5.6e-24  Score=172.61  Aligned_cols=209  Identities=15%  Similarity=0.105  Sum_probs=192.0

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLPA  149 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~  149 (342)
                      +|.++.+++.+|.++...|++++|+.+|+++++  |.++.++..+|.++..    .+++++|+..|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            578899999999999999999999999999998  7788999999999999    999999999999999985  78899


Q ss_pred             HHHHHHHhh----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701         150 LYVGLECGL----TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQLGGEIIADK  221 (342)
Q Consensus       150 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~  221 (342)
                      ..+|.++..    .+++++|+..|+++++.  +++.++..+|.++..    .+++++|+.+|+++++..+          
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----------  145 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND----------  145 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc----------
Confidence            999999999    99999999999999987  489999999999999    9999999999999998752          


Q ss_pred             hhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH-
Q psy3701         222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL-  296 (342)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-  296 (342)
                                                  ..++..+|.++..    .+++++|+.+|+++++.  +++.++..+|.++.. 
T Consensus       146 ----------------------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g  195 (273)
T 1ouv_A          146 ----------------------------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHG  195 (273)
T ss_dssp             ----------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             ----------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Confidence                                        4688999999998    99999999999999987  467899999999999 


Q ss_pred             ---hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         297 ---TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       297 ---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                         .+++++|+.+|+++++..|  +.++..++.++..
T Consensus       196 ~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~  230 (273)
T 1ouv_A          196 EGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN  230 (273)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence               9999999999999999866  7888899988875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=188.61  Aligned_cols=256  Identities=14%  Similarity=0.101  Sum_probs=198.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVD-LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      .....++..+|.++...|++++|+..|++++     .++.+... ..|....++..+|.++...|++++|+.++++++..
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQAL-----EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3456778889999999999999999999974     22222110 46777899999999999999999999999999987


Q ss_pred             --------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC--------CCCchHHHHHHHHHhhhCCHHHHHHHHHH
Q psy3701         108 --------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF--------KGCHLPALYVGLECGLTNNARLASKFFDL  171 (342)
Q Consensus       108 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  171 (342)
                              .|....++..+|.++...|++++|+..++++++..        |....++..+|.++...|++++|+.++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                    46667889999999999999999999999999874        44566788899999999999999999999


Q ss_pred             HHhh--------CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchh
Q psy3701         172 ALSI--------AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE  243 (342)
Q Consensus       172 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
                      ++..        .|....++..+|.++...|++++|+..++++++..+...-              +             
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~-------------  231 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF--------------G-------------  231 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH--------------C-------------
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--------------C-------------
Confidence            9988        6666778999999999999999999999999998765310              0             


Q ss_pred             ccCCCC------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         244 IIADKW------EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       244 ~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                      ...+..      ...+...+..+...+.+.+|...++++....|....++..+|.++...|++++|+.+|++++++.|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            000001      2334444555566677778888999999889999999999999999999999999999999999875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.94  E-value=1.9e-25  Score=190.33  Aligned_cols=243  Identities=12%  Similarity=0.117  Sum_probs=202.6

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDL---YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK  109 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  109 (342)
                      ..++.+|..+...|++++|+..|++++         ++...   .+..+.++..+|.++...|++++|+.++++++++.+
T Consensus       104 ~~~~~~g~~~~~~g~~~~A~~~~~~al---------~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  174 (383)
T 3ulq_A          104 YFNFFRGMYELDQREYLSAIKFFKKAE---------SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK  174 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH---------TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH---------HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            345569999999999999999999974         01111   223568999999999999999999999999998744


Q ss_pred             C-------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc------hHHHHHHHHHhhhCCHHHHHHHHHHHHh--
Q psy3701         110 L-------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH------LPALYVGLECGLTNNARLASKFFDLALS--  174 (342)
Q Consensus       110 ~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~--  174 (342)
                      .       ...++..+|.++...|++++|+..+++++++.+...      .++..+|.++...|++++|+.++++++.  
T Consensus       175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  254 (383)
T 3ulq_A          175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF  254 (383)
T ss_dssp             TCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3       345789999999999999999999999998866543      4788899999999999999999999999  


Q ss_pred             ---hC-CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701         175 ---IA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE  250 (342)
Q Consensus       175 ---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
                         .+ |..+.++..+|.++...|++++|+.++++++++.+...                               .+...
T Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------~~~~~  303 (383)
T 3ulq_A          255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG-------------------------------DVIYL  303 (383)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------------------------------CHHHH
T ss_pred             HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------------------------------CHHHH
Confidence               45 77788999999999999999999999999999876542                               11112


Q ss_pred             HHHHHHHHHHHHhhh---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         251 PLLNNLGHVNRKLKK---YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                      ..+..+|.++...|+   +++|+..+++. ...|....++..+|.++...|++++|..+|++++++...
T Consensus       304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            345679999999998   88888888876 333455678889999999999999999999999987543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.94  E-value=1.3e-25  Score=187.30  Aligned_cols=250  Identities=20%  Similarity=0.188  Sum_probs=207.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      ..++..+|.++...|++++|+..+++++     .+... ....|..+.++..+|.++...|++++|+..++++++..|..
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           43 SAIYSQLGNAYFYLHDYAKALEYHHHDL-----TLART-IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHhhc-ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            5678889999999999999999999974     22222 13345567899999999999999999999999999876543


Q ss_pred             ------HHHHHHhhhHHHhhcc--------------------HHHHHHHHHHHhccC------CCCchHHHHHHHHHhhh
Q psy3701         112 ------LPAWLMYGHSFAVENE--------------------HDQAMAAYFNAFNLF------KGCHLPALYVGLECGLT  159 (342)
Q Consensus       112 ------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~  159 (342)
                            ..++..+|.++...|+                    +++|+..+++++...      +....++..+|.++...
T Consensus       117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  196 (338)
T 3ro2_A          117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL  196 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence                  3488999999999999                    999999999998763      23345778899999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701         160 NNARLASKFFDLALSIAHEDP------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA  233 (342)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
                      |++++|+..+++++...+...      .++..+|.++...|++++|+..+++++...+...                   
T Consensus       197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------  257 (338)
T 3ro2_A          197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-------------------  257 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-------------------
Confidence            999999999999998765432      3789999999999999999999999999887763                   


Q ss_pred             HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCChHHHHHHH
Q psy3701         234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK------ASTFCCIGYIQALTGDLDSAVNYF  307 (342)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~  307 (342)
                                 ..+....++..+|.++...|++++|+.+++++++..+..      ..++..+|.++...|++++|..++
T Consensus       258 -----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (338)
T 3ro2_A          258 -----------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA  326 (338)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             -----------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence                       111124688899999999999999999999999876543      457889999999999999999999


Q ss_pred             HHHHhcccCc
Q psy3701         308 HKTMALKRDD  317 (342)
Q Consensus       308 ~~al~~~p~~  317 (342)
                      ++++++.+..
T Consensus       327 ~~a~~~~~~~  336 (338)
T 3ro2_A          327 EKHLEISREV  336 (338)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHHhh
Confidence            9999987754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.93  E-value=1.4e-24  Score=174.97  Aligned_cols=199  Identities=13%  Similarity=0.091  Sum_probs=176.2

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---  145 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---  145 (342)
                      ...|.++..++.+|..++..|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|+++++..|++   
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            5688999999999999999999999999999999999998   8999999999999999999999999999998865   


Q ss_pred             chHHHHHHHHHhh--------hCCHHHHHHHHHHHHhhCCCChHHH-----------------HHHHHHHHHhcChhHHH
Q psy3701         146 HLPALYVGLECGL--------TNNARLASKFFDLALSIAHEDPFVI-----------------HEMGVIAYQNHNYTVAE  200 (342)
Q Consensus       146 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~A~  200 (342)
                      +.+++.+|.++..        .|++++|+..|++++...|+++.+.                 +.+|.++...|++++|+
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            4578899999999        9999999999999999999987666                 88899999999999999


Q ss_pred             HHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh----------hhHHHHH
Q psy3701         201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL----------KKYEEAL  270 (342)
Q Consensus       201 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~  270 (342)
                      ..|+++++..|+++                                 ....++..+|.++..+          |++++|+
T Consensus       169 ~~~~~~l~~~p~~~---------------------------------~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~  215 (261)
T 3qky_A          169 VTYEAVFDAYPDTP---------------------------------WADDALVGAMRAYIAYAEQSVRARQPERYRRAV  215 (261)
T ss_dssp             HHHHHHHHHCTTST---------------------------------THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCc---------------------------------hHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence            99999999999863                                 1247899999999977          8999999


Q ss_pred             HHHHHHHhhCCCch---HHHHHHHHHHHHhCChHHH
Q psy3701         271 EFHKQALVVAPMKA---STFCCIGYIQALTGDLDSA  303 (342)
Q Consensus       271 ~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A  303 (342)
                      ..|+++++..|+++   .+...++.++..+++++++
T Consensus       216 ~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          216 ELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999885   4556667777666665543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.93  E-value=4.2e-24  Score=173.28  Aligned_cols=232  Identities=7%  Similarity=-0.048  Sum_probs=212.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--ChHHHHHHHHHHhhcCCCcHHHHHHhhhHH----
Q psy3701          49 ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG--RSDPARRFLGKATSLDKLFLPAWLMYGHSF----  122 (342)
Q Consensus        49 ~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~la~~~----  122 (342)
                      ++|+.++.+            ++..+|++..+|+..+.+....+  ++++++.++++++..+|++..+|...+.++    
T Consensus        50 ~~aL~~t~~------------~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~  117 (306)
T 3dra_A           50 ERALHITEL------------GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM  117 (306)
T ss_dssp             HHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH------------HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence            567777766            57999999999999999999999  999999999999999999999999999999    


Q ss_pred             Hhh---ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHH--HHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC--
Q psy3701         123 AVE---NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNAR--LASKFFDLALSIAHEDPFVIHEMGVIAYQNHN--  195 (342)
Q Consensus       123 ~~~---g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  195 (342)
                      ...   +++++++..+.++++.+|.+..+|...+.+....|.++  ++++.++++++.+|.+..+|...+.+....++  
T Consensus       118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~  197 (306)
T 3dra_A          118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA  197 (306)
T ss_dssp             HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred             HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence            666   78999999999999999999999999999999999999  99999999999999999999999999999988  


Q ss_pred             ----hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH-HH
Q psy3701         196 ----YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE-AL  270 (342)
Q Consensus       196 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~  270 (342)
                          ++++++++++++..+|.+                                    ..+|+.++.++...|+..+ ..
T Consensus       198 ~~~~~~eEl~~~~~aI~~~p~n------------------------------------~SaW~y~~~ll~~~~~~~~~~~  241 (306)
T 3dra_A          198 TDNTIDEELNYVKDKIVKCPQN------------------------------------PSTWNYLLGIHERFDRSITQLE  241 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSC------------------------------------HHHHHHHHHHHHHTTCCGGGGH
T ss_pred             hhhhHHHHHHHHHHHHHhCCCC------------------------------------ccHHHHHHHHHHhcCCChHHHH
Confidence                999999999999999999                                    5899999999999998555 55


Q ss_pred             HHHHHHHhhC---CCchHHHHHHHHHHHHhCChHHHHHHHHHHHh-cccCchhHHhHHHHHH
Q psy3701         271 EFHKQALVVA---PMKASTFCCIGYIQALTGDLDSAVNYFHKTMA-LKRDDSFATTMLSYVI  328 (342)
Q Consensus       271 ~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~  328 (342)
                      .++++++..+   |.++.++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+..+
T Consensus       242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l  303 (306)
T 3dra_A          242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL  303 (306)
T ss_dssp             HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence            6777777766   78899999999999999999999999999997 8999998888766543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.93  E-value=4.9e-24  Score=175.96  Aligned_cols=238  Identities=11%  Similarity=0.067  Sum_probs=201.9

Q ss_pred             HHHHHHHHHhHHHHh-------hccH-------HHHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCCh
Q psy3701          30 MKSALLLLKGRVYEA-------LENR-------ALAADCYKGALLADLFKLAHELVD-LYPDSAIAWYAVGCYYYLIGRS   94 (342)
Q Consensus        30 ~~~~~~~~~g~~~~~-------~~~~-------~~A~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~   94 (342)
                      ....+|+..|..+..       .|++       ++|+..|+++            +. .+|++..+|..+|.++...|++
T Consensus        48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA------------l~~~~p~~~~~~~~~~~~~~~~~~~  115 (308)
T 2ond_A           48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA------------ISTLLKKNMLLYFAYADYEESRMKY  115 (308)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH------------HTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH------------HHHhCcccHHHHHHHHHHHHhcCCH
Confidence            345677778877763       4665       7777777775            57 6999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCcHH-HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh-hhCCHHHHHHHHHHH
Q psy3701          95 DPARRFLGKATSLDKLFLP-AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG-LTNNARLASKFFDLA  172 (342)
Q Consensus        95 ~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~  172 (342)
                      ++|+..|+++++.+|.++. +|..+|.++...|++++|+..|+++++..|.....+...+.... ..|++++|+..|+++
T Consensus       116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~a  195 (308)
T 2ond_A          116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG  195 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999987 99999999999999999999999999999988777776665543 379999999999999


Q ss_pred             HhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh---hhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCC
Q psy3701         173 LSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK---VKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKW  249 (342)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
                      ++.+|+++.+|..+|.++...|++++|+..|++++..   .|+..                                   
T Consensus       196 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~-----------------------------------  240 (308)
T 2ond_A          196 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS-----------------------------------  240 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC-----------------------------------
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH-----------------------------------
Confidence            9999999999999999999999999999999999996   44432                                   


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      ..+|..++..+...|++++|...++++++..|++..... ++.+   ..        -.+.+.++|+++.+...||.
T Consensus       241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~---~~--------r~~~l~~~P~~~~~ln~lgY  305 (308)
T 2ond_A          241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL---VD--------RYKFMDLYPCSASELKALGY  305 (308)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH---HT--------TTCBTTBCSSCHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH---HH--------HHHhcccCCCCHHHHHhcCC
Confidence            578999999999999999999999999999998664332 1222   11        12678899999998887764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.93  E-value=9.5e-25  Score=198.52  Aligned_cols=188  Identities=10%  Similarity=-0.091  Sum_probs=175.8

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh--------hcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT--------SLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK  143 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  143 (342)
                      ..+|+++.+++..|   ...|++++|+..+++++        +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            34677887877777   78999999999999999        89999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh
Q psy3701         144 GCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE  223 (342)
Q Consensus       144 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  223 (342)
                      ++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++++|++          
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~----------  533 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV----------  533 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC----------
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch----------
Confidence            9999999999999999999999999999999999999999999999999999999 99999999999998          


Q ss_pred             hHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701         224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGD  299 (342)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  299 (342)
                                                ..+++++|.++...|++++|+..|+++++.+|++..++.++|.++...++
T Consensus       534 --------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          534 --------------------------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             --------------------------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence                                      58999999999999999999999999999999999999999999987665

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.93  E-value=7.9e-24  Score=170.56  Aligned_cols=210  Identities=12%  Similarity=0.068  Sum_probs=174.6

Q ss_pred             hhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC--
Q psy3701         105 TSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HLPALYVGLECGLTNNARLASKFFDLALSIAHED--  179 (342)
Q Consensus       105 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--  179 (342)
                      ...+|.++..++.+|..+...|++++|+..|+++++..|.+   +.+++.+|.++...|++++|+..|+++++..|++  
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            45678899999999999999999999999999999999998   7899999999999999999999999999998865  


Q ss_pred             -hHHHHHHHHHHHH--------hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701         180 -PFVIHEMGVIAYQ--------NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE  250 (342)
Q Consensus       180 -~~~~~~l~~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
                       +.+++.+|.++..        .|++++|+..|+++++..|+++..     + .+...+.....             ...
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~-~a~~~~~~~~~-------------~~~  148 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV-----D-DATQKIRELRA-------------KLA  148 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH-----H-HHHHHHHHHHH-------------HHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH-----H-HHHHHHHHHHH-------------HHH
Confidence             5689999999999        999999999999999999988410     0 00000000000             012


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHh----------CChHHHHHHHHHHHhcccCc
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPM---KASTFCCIGYIQALT----------GDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~  317 (342)
                      ..++.+|.++...|++++|+..|+++++..|+   .+.+++.+|.++..+          |++++|+..|+++++.+|++
T Consensus       149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            44689999999999999999999999999998   567999999999977          99999999999999999999


Q ss_pred             h---hHHhHHHHHHHHhhh
Q psy3701         318 S---FATTMLSYVIEQLIE  333 (342)
Q Consensus       318 ~---~~~~~l~~~~~~~~~  333 (342)
                      +   .+...++.+.....+
T Consensus       229 ~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          229 PLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            6   455566666655443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.93  E-value=1.6e-24  Score=177.47  Aligned_cols=217  Identities=13%  Similarity=0.019  Sum_probs=177.6

Q ss_pred             HHHHHHhCChHHHHHHHHHHhhcCCC------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC------chHHHHH
Q psy3701          85 GCYYYLIGRSDPARRFLGKATSLDKL------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------HLPALYV  152 (342)
Q Consensus        85 ~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l  152 (342)
                      |.++...|++++|+.+|++++.+.+.      .+.++..+|.++...|++++|+.+|++++++.|..      ..++..+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56788899999999999999987532      25689999999999999999999999999998754      3467889


Q ss_pred             HHHHhhh-CCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhH
Q psy3701         153 GLECGLT-NNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPL  225 (342)
Q Consensus       153 ~~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  225 (342)
                      |.++... |++++|+.+|++++++.|.+      ..++..+|.++..+|++++|+..|+++++..|.++.          
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------  193 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL----------  193 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT----------
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc----------
Confidence            9999996 99999999999999998754      467889999999999999999999999999987730          


Q ss_pred             HHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH-----HHHHHHHHH--HhC
Q psy3701         226 LNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST-----FCCIGYIQA--LTG  298 (342)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~l~~~~~--~~g  298 (342)
                                         ........+.++|.++..+|++++|+..|+++++++|+....     +..++..+.  ..+
T Consensus       194 -------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~  254 (292)
T 1qqe_A          194 -------------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE  254 (292)
T ss_dssp             -------------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred             -------------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence                               000112478899999999999999999999999999986643     445566554  467


Q ss_pred             ChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         299 DLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       299 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ++++|+..|++++.++|.+...+..+...++.
T Consensus       255 ~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~~  286 (292)
T 1qqe_A          255 QLSEHCKEFDNFMRLDKWKITILNKIKESIQQ  286 (292)
T ss_dssp             THHHHHHHHTTSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCccHHHHHHHHHHHHHHhhc
Confidence            89999999999999999888777777776644

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.92  E-value=7.5e-24  Score=164.52  Aligned_cols=195  Identities=12%  Similarity=-0.025  Sum_probs=130.9

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      +++.++..|..++..|++++|+..|+++++.+|+++.+++..+..     ...             ...+.....+|.++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~~~-------------~~~~~~~~~lg~~~   64 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----KNS-------------EISSKLATELALAY   64 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----TTS-------------HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----chh-------------hhhHHHHHHHHHHH
Confidence            466778889999999999999999999999999888887763210     000             00112233477777


Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK  236 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                      ...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++                       
T Consensus        65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-----------------------  121 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-----------------------  121 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------------------
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------------------
Confidence            777777777777777777777777777777777777777777777777777777777                       


Q ss_pred             HHHhchhccCCCChHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         237 VKQLGGEIIADKWEPLLNNLGHVNRKLKK--YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                                   +.+++++|.++...|+  ...+...+++++...| ...+++.+|.++...|++++|+.+|+++++++
T Consensus       122 -------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          122 -------------LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             -------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                         4677777777765543  3455666666543222 22356667777777777777777777777777


Q ss_pred             cCchhHHhHHHHH
Q psy3701         315 RDDSFATTMLSYV  327 (342)
Q Consensus       315 p~~~~~~~~l~~~  327 (342)
                      |+.. +...+.++
T Consensus       188 P~~~-~~~~l~~i  199 (208)
T 3urz_A          188 PSTE-AQKTLDKI  199 (208)
T ss_dssp             CCHH-HHHHHHHH
T ss_pred             CCHH-HHHHHHHH
Confidence            7643 33334443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.92  E-value=3.7e-23  Score=157.42  Aligned_cols=174  Identities=18%  Similarity=0.152  Sum_probs=124.4

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      ...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666777777777777777


Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE  271 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (342)
                      ..|++++|+..+++++...|.+                                    ..++..+|.++...|++++|+.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~a~~~~~~~~~~~A~~  131 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPIN------------------------------------FNVRFRLGVALDNLGRFDEAID  131 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHh------------------------------------HHHHHHHHHHHHHcCcHHHHHH
Confidence            7777777777777777777666                                    4677777777777788888888


Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701         272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT  321 (342)
Q Consensus       272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  321 (342)
                      .++++++..|.++.++..+|.++...|++++|..+++++++..|+++...
T Consensus       132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  181 (186)
T 3as5_A          132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL  181 (186)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence            88888777777777778888888888888888888888888777766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.92  E-value=1.7e-23  Score=177.81  Aligned_cols=246  Identities=12%  Similarity=0.113  Sum_probs=201.1

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC-
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL-  110 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-  110 (342)
                      ...++.+|..+...|++++|+..|++++.     ++.. +...|..+.+++.+|.++...|++++|+.++++++++.+. 
T Consensus       101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A          101 YYSLFFRGMYEFDQKEYVEAIGYYREAEK-----ELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----HHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence            34566799999999999999999999740     0000 0112345789999999999999999999999999987543 


Q ss_pred             ------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------CchHHHHHHHHHhhhCCHHHHHHHHHHHHh----
Q psy3701         111 ------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------CHLPALYVGLECGLTNNARLASKFFDLALS----  174 (342)
Q Consensus       111 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----  174 (342)
                            ...++..+|.++...|++++|+..+++++++.+.      ...++..+|.++...|++++|+.++++++.    
T Consensus       175 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence                  2457889999999999999999999999987542      234677899999999999999999999999    


Q ss_pred             -hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHH
Q psy3701         175 -IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLL  253 (342)
Q Consensus       175 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (342)
                       .+|..+.++..+|.++...|++++|+.++++++++.+..+                               .+.....+
T Consensus       255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------~~~~~~~~  303 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS-------------------------------HKFYKELF  303 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC-------------------------------CSCHHHHH
T ss_pred             hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------------------------------CHHHHHHH
Confidence             7787888999999999999999999999999999977652                               22223456


Q ss_pred             HHHHHHHHHhhh---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         254 NNLGHVNRKLKK---YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       254 ~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                      ..++.++...|+   +.+|+.++++. ...|.....+..+|.+|...|++++|..+|+++++...
T Consensus       304 ~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  367 (378)
T 3q15_A          304 LFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE  367 (378)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            778888888887   88888888872 22344456788999999999999999999999987643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.91  E-value=7e-23  Score=155.86  Aligned_cols=175  Identities=15%  Similarity=0.064  Sum_probs=166.9

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL  154 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  154 (342)
                      +.....+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   84 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL   84 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      ++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.+                     
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------  143 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---------------------  143 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---------------------
Confidence            99999999999999999999999999999999999999999999999999999999887                     


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS  285 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  285 (342)
                                     ..++..+|.++...|++++|+..++++++..|++..
T Consensus       144 ---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          144 ---------------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             ---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence                           589999999999999999999999999999887653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.91  E-value=2e-21  Score=170.78  Aligned_cols=232  Identities=11%  Similarity=0.041  Sum_probs=136.8

Q ss_pred             cHHHHHHHHHHHHH----hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchH
Q psy3701          77 SAIAWYAVGCYYYL----IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLP  148 (342)
Q Consensus        77 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~  148 (342)
                      ++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.++..+|.++..    .+++++|+.+|+++.+.  .++.+
T Consensus       182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  257 (490)
T 2xm6_A          182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIA  257 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            34444444444444    44444444444444432  233444444444443    44455555555554443  23445


Q ss_pred             HHHHHHHHhh----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-----cChhHHHHHHHHHHHhhhhcCccccc
Q psy3701         149 ALYVGLECGL----TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN-----HNYTVAENCFMEALSKVKQLGGEIIA  219 (342)
Q Consensus       149 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~  219 (342)
                      ++.+|.++..    .+++++|+.+|+++.+.  .++.+++.+|.++...     +++++|+.+|+++.+..+..      
T Consensus       258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~------  329 (490)
T 2xm6_A          258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT------  329 (490)
T ss_dssp             HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH------
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH------
Confidence            5555555555    55566666666655543  3455566666666655     56666666666665543222      


Q ss_pred             cchhhHHHHhhh---------hHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHH
Q psy3701         220 DKWEPLLNNLGH---------KAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKAST  286 (342)
Q Consensus       220 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~  286 (342)
                           ....++.         ...++...+...... ..+.+++++|.+|..    .+++++|+.+|+++++.  .++.+
T Consensus       330 -----a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a  401 (490)
T 2xm6_A          330 -----AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAA  401 (490)
T ss_dssp             -----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             -----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHH
Confidence                 1222221         223444444443222 457788889998888    78899999999998875  36788


Q ss_pred             HHHHHHHHHH----hCChHHHHHHHHHHHhcc---cCchhHHhHHHHHH
Q psy3701         287 FCCIGYIQAL----TGDLDSAVNYFHKTMALK---RDDSFATTMLSYVI  328 (342)
Q Consensus       287 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~  328 (342)
                      +..+|.+|..    .+++++|+.+|+++++..   |+++.+...++.+.
T Consensus       402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~  450 (490)
T 2xm6_A          402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLT  450 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence            8889999888    889999999999999888   44777777765543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.91  E-value=8e-24  Score=172.19  Aligned_cols=240  Identities=16%  Similarity=0.138  Sum_probs=187.6

Q ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------CCCcHH
Q psy3701          43 EALENRALAADCYKGALLADLFKLAHELVDLY-PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--------DKLFLP  113 (342)
Q Consensus        43 ~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~  113 (342)
                      ...|++++|+..|++++     .++.+....+ |..+.++..+|.++...|++++|+.++++++..        .|....
T Consensus        12 ~~~~~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQAL-----EDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA   86 (283)
T ss_dssp             -CCSCSSSHHHHHHHHH-----HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH-----HHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence            34677788888888764     4555555434 778899999999999999999999999999977        466678


Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh--------CC
Q psy3701         114 AWLMYGHSFAVENEHDQAMAAYFNAFNL--------FKGCHLPALYVGLECGLTNNARLASKFFDLALSI--------AH  177 (342)
Q Consensus       114 ~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~  177 (342)
                      ++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++..        .|
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  166 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP  166 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            8999999999999999999999999988        4666778889999999999999999999999998        66


Q ss_pred             CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701         178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG  257 (342)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  257 (342)
                      ....++..+|.++...|++++|+..++++++..+....                           ....+.....+..++
T Consensus       167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------------------------~~~~~~~~~~~~~~~  219 (283)
T 3edt_B          167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF---------------------------GSVNGDNKPIWMHAE  219 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS---------------------------SSCCSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---------------------------CCcchhHHHHHHHHH
Confidence            66788999999999999999999999999998765410                           001222344666666


Q ss_pred             HHHHHhhh------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         258 HVNRKLKK------YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       258 ~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      ......+.      +.++...++......|....++..+|.++...|++++|+.+|++++++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            66554333      4444444444444456667889999999999999999999999998763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.91  E-value=6.5e-23  Score=174.60  Aligned_cols=222  Identities=15%  Similarity=0.107  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhc------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-------
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSL------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-------  146 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------  146 (342)
                      .++.+|.++...|++++|+.+|++++.+      .+..+.++..+|.++...|++++|+..+++++++.+...       
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            4455999999999999999999999987      223467899999999999999999999999999866543       


Q ss_pred             hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDP------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      .++..+|.++...|++++|+..+++++...+...      .++.++|.++...|++++|+.++++++++.+...      
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~------  258 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN------  258 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc------
Confidence            4678899999999999999999999998765433      5789999999999999999999999999755442      


Q ss_pred             chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHH
Q psy3701         221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA-----PMKASTFCCIGYIQA  295 (342)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~l~~~~~  295 (342)
                                              ..+..+.++.++|.++...|++++|+.+++++++..     |.....+..+|.++.
T Consensus       259 ------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~  314 (383)
T 3ulq_A          259 ------------------------ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL  314 (383)
T ss_dssp             ------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             ------------------------cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                                    113336789999999999999999999999999874     333344677999999


Q ss_pred             HhCC---hHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         296 LTGD---LDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       296 ~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ..|+   +++|+..+++. ...|....++..++.++...+
T Consensus       315 ~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g  353 (383)
T 3ulq_A          315 SGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERK  353 (383)
T ss_dssp             SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCC
Confidence            9999   88899888887 455666677788888876654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.91  E-value=5.9e-23  Score=159.43  Aligned_cols=161  Identities=13%  Similarity=0.089  Sum_probs=110.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      ++.++..|..+...|++++|+..|+++++.+|+++.+++..+..     ..             ....+.....+|.++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~~-------------~~~~~~~~~~lg~~~~   65 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----KN-------------SEISSKLATELALAYK   65 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----TT-------------SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----ch-------------hhhhHHHHHHHHHHHH
Confidence            34445555555555555555555555555555544444332210     00             0001223344999999


Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE  271 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (342)
                      ..|++++|+..|+++++++|++                                    ..++..+|.++...|++++|+.
T Consensus        66 ~~g~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~lg~~~~~~g~~~~A~~  109 (208)
T 3urz_A           66 KNRNYDKAYLFYKELLQKAPNN------------------------------------VDCLEACAEMQVCRGQEKDALR  109 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCC------------------------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999998                                    5899999999999999999999


Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHhCC--hHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         272 FHKQALVVAPMKASTFCCIGYIQALTGD--LDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                      .|+++++++|+++.+++.+|.++...|+  ...+...+++++...|.. .+++.++.+
T Consensus       110 ~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~  166 (208)
T 3urz_A          110 MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRDGLS  166 (208)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHHHHH
Confidence            9999999999999999999999987764  456777888877554432 234444433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.91  E-value=2.5e-24  Score=157.98  Aligned_cols=143  Identities=9%  Similarity=0.085  Sum_probs=75.4

Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH  231 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  231 (342)
                      +|.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++++|++                  
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------------------   64 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD------------------   64 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------
Confidence            34444455555555555555555555555555555555555555555555555555555555                  


Q ss_pred             hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHH-HHHH
Q psy3701         232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNY-FHKT  310 (342)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~a  310 (342)
                                        +.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++
T Consensus        65 ------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a  126 (150)
T 4ga2_A           65 ------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA  126 (150)
T ss_dssp             ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                              355555555555555555555555555555555555555555555555555544433 3555


Q ss_pred             HhcccCchhHHhHHHHHHHH
Q psy3701         311 MALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       311 l~~~p~~~~~~~~l~~~~~~  330 (342)
                      ++++|+++.++...+.++..
T Consensus       127 l~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A          127 AKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHSTTCHHHHHHHHHHHHT
T ss_pred             HHhCcCCHHHHHHHHHHHHH
Confidence            55555555555555555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.91  E-value=9.8e-21  Score=166.38  Aligned_cols=238  Identities=15%  Similarity=0.089  Sum_probs=136.0

Q ss_pred             cHHHHHHHHHHHHH----hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchH
Q psy3701          77 SAIAWYAVGCYYYL----IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLP  148 (342)
Q Consensus        77 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~  148 (342)
                      ++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+
T Consensus       146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  221 (490)
T 2xm6_A          146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELG  221 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence            34444444444444    44444444444444443  234444445544444    44455555555554443  23344


Q ss_pred             HHHHHHHHhh----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         149 ALYVGLECGL----TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       149 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      +..+|.++..    .+++++|+.+|+++.+.  .++.+++.+|.++..    .+++++|+.+|+++.+.....     ..
T Consensus       222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~-----a~  294 (490)
T 2xm6_A          222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD-----GQ  294 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH-----HH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH-----HH
Confidence            4445555443    44555555555555443  344555555555555    555566666666555432111     00


Q ss_pred             chhhHHHHhh-----hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCCchHHHHHHHH
Q psy3701         221 KWEPLLNNLG-----HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPMKASTFCCIGY  292 (342)
Q Consensus       221 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~  292 (342)
                      .........+     ....++...+..... ...+.+++.+|.++...|   ++++|+.+|+++++.  .++.+++.+|.
T Consensus       295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  371 (490)
T 2xm6_A          295 YYLAHLYDKGAEGVAKNREQAISWYTKSAE-QGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGN  371 (490)
T ss_dssp             HHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            0001111111     222333333333222 234678888999988755   889999999999876  57888999999


Q ss_pred             HHHH----hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         293 IQAL----TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       293 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      +|..    .+++++|+.+|+++++.  +++.++..|+.++..
T Consensus       372 ~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          372 ALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence            9998    89999999999999885  468888888888865

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.6e-23  Score=190.46  Aligned_cols=183  Identities=14%  Similarity=-0.006  Sum_probs=174.8

Q ss_pred             hcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHh--------ccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC
Q psy3701         106 SLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAF--------NLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAH  177 (342)
Q Consensus       106 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  177 (342)
                      ..+|+++.+++..+   ...|++++|++.+++++        +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            46788888877776   78999999999999999        89999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701         178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG  257 (342)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  257 (342)
                      ++..+++.+|.++...|++++|+..|+++++++|++                                    ..++.++|
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------------------------------------~~~~~~lg  508 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE------------------------------------LAPKLALA  508 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------------------------------------SHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------hHHHHHHH
Confidence            999999999999999999999999999999999999                                    48999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      .++...|++++ +..|+++++.+|++..+++++|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus       509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            99999999999 99999999999999999999999999999999999999999999999999999998886

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.91  E-value=6.3e-24  Score=155.83  Aligned_cols=147  Identities=12%  Similarity=0.129  Sum_probs=110.9

Q ss_pred             HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701         117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY  196 (342)
Q Consensus       117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (342)
                      .||.++...|++++|+..+++++...|.++..++.+|.+|...|++++|++.|+++++++|+++.+|..+|.++...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            36777777777888888888887777777777777888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH-HHH
Q psy3701         197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF-HKQ  275 (342)
Q Consensus       197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~  275 (342)
                      ++|+..|+++++++|++                                    +.++..+|.++...|++++|... +++
T Consensus        82 ~~A~~~~~~al~~~p~~------------------------------------~~~~~~la~~~~~~~~~~~aa~~~~~~  125 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQ------------------------------------KDLVLKIAELLCKNDVTDGRAKYWVER  125 (150)
T ss_dssp             HHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            88888888888887777                                    47778888888888877766554 477


Q ss_pred             HHhhCCCchHHHHHHHHHHHHhCC
Q psy3701         276 ALVVAPMKASTFCCIGYIQALTGD  299 (342)
Q Consensus       276 al~~~~~~~~~~~~l~~~~~~~g~  299 (342)
                      +++++|+++.++..++.++...|+
T Consensus       126 al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          126 AAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHhCcCCHHHHHHHHHHHHHhCc
Confidence            888888888777777777777664

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.91  E-value=5.8e-22  Score=175.90  Aligned_cols=221  Identities=13%  Similarity=0.104  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------hCChH-------HHHHHHHHHhh-cCCCcHHHHHHhhhHHHhhc
Q psy3701          62 DLFKLAHELVDLYPDSAIAWYAVGCYYYL-------IGRSD-------PARRFLGKATS-LDKLFLPAWLMYGHSFAVEN  126 (342)
Q Consensus        62 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g  126 (342)
                      .++..+++++..+|.++.+|..+|..+..       .|+++       +|+..|+++++ ..|++...|..+|.++...|
T Consensus       256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g  335 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM  335 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence            45678888899999999999999999986       79987       99999999997 89999999999999999999


Q ss_pred             cHHHHHHHHHHHhccCCCCc-hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH-HHHhcChhHHHHHHH
Q psy3701         127 EHDQAMAAYFNAFNLFKGCH-LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI-AYQNHNYTVAENCFM  204 (342)
Q Consensus       127 ~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~  204 (342)
                      ++++|...|+++++..|.++ .+|..++..+.+.|++++|+..|+++++..|.....+...+.+ +...|++++|...|+
T Consensus       336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e  415 (530)
T 2ooe_A          336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE  415 (530)
T ss_dssp             CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            99999999999999999885 5899999999999999999999999999999888887777766 346899999999999


Q ss_pred             HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch
Q psy3701         205 EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA  284 (342)
Q Consensus       205 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  284 (342)
                      ++++..|++                                    +.+|..++..+...|+.++|...|++++...|.++
T Consensus       416 ~al~~~p~~------------------------------------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          416 LGLKKYGDI------------------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             HHHHHHTTC------------------------------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             HHHHHCCCC------------------------------------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            999999988                                    58999999999999999999999999999877655


Q ss_pred             H----HHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         285 S----TFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       285 ~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      .    +|..........|+.+.+..+++++++..|++.
T Consensus       460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~  497 (530)
T 2ooe_A          460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  497 (530)
T ss_dssp             GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence            4    888888888899999999999999999999644

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.90  E-value=1.3e-20  Score=153.49  Aligned_cols=231  Identities=10%  Similarity=-0.009  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc--H
Q psy3701          61 ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR----------SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE--H  128 (342)
Q Consensus        61 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~  128 (342)
                      ++|+.++..++..+|++..+|+..+.+....+.          +++++.++++++..+|++..+|...+.++...|+  +
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence            455666666789999999999999999988776          6899999999999999999999999999999994  8


Q ss_pred             HHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--------------
Q psy3701         129 DQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN-ARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--------------  193 (342)
Q Consensus       129 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------  193 (342)
                      ++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|...+.++...              
T Consensus       127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~  206 (331)
T 3dss_A          127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  206 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccch
Confidence            999999999999999999999999999999998 69999999999999999999999999999887              


Q ss_pred             cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh----------
Q psy3701         194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL----------  263 (342)
Q Consensus       194 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------  263 (342)
                      +.++++++++.+++..+|++                                    ..+|+.+..++...          
T Consensus       207 ~~~~eEle~~~~ai~~~P~d------------------------------------~SaW~Y~r~ll~~~~~~~~~~~~~  250 (331)
T 3dss_A          207 NVLLKELELVQNAFFTDPND------------------------------------QSAWFYHRWLLGAGSGRCELSVEK  250 (331)
T ss_dssp             HHHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHhccCccccchHH
Confidence            56899999999999999999                                    46776665555544          


Q ss_pred             -hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHH---HhCChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         264 -KKYEEALEFHKQALVVAPMKASTFCCIGYIQA---LTGDLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       264 -g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                       +.++++++.++++++..|++..++..++.+..   ..|..++...++.+.++++|....-+..+...
T Consensus       251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~  318 (331)
T 3dss_A          251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  318 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence             67899999999999999999766555554433   35788899999999999999988777666443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.90  E-value=3.7e-22  Score=156.99  Aligned_cols=208  Identities=9%  Similarity=-0.119  Sum_probs=158.2

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH---HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch---HHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL---PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL---PAL  150 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~  150 (342)
                      ++..++.+|..++..|++++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++..|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            467889999999999999999999999999988764   68999999999999999999999999999999875   678


Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG  230 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                      .+|.++...+..                ....+..++..+...|++++|+..|+++++..|+++..     + .+...+.
T Consensus        83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a-----~-~a~~~l~  140 (225)
T 2yhc_A           83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT-----T-DATKRLV  140 (225)
T ss_dssp             HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTH-----H-HHHHHHH
T ss_pred             HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH-----H-HHHHHHH
Confidence            888888765531                11223455666667778888888888888888877410     0 0111111


Q ss_pred             hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHhCChHHHHHHH
Q psy3701         231 HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA---STFCCIGYIQALTGDLDSAVNYF  307 (342)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~  307 (342)
                      .....             .......+|.++...|++++|+..|+++++..|+++   .++..+|.++.++|++++|+..+
T Consensus       141 ~~~~~-------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          141 FLKDR-------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             HHHHH-------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHH-------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            11110             023456789999999999999999999999999876   67999999999999999999999


Q ss_pred             HHHHhcccCchh
Q psy3701         308 HKTMALKRDDSF  319 (342)
Q Consensus       308 ~~al~~~p~~~~  319 (342)
                      +++....|++.+
T Consensus       208 ~~l~~~~~~~~~  219 (225)
T 2yhc_A          208 KIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHCCSCCCC
T ss_pred             HHHHhhCCCchh
Confidence            999999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.90  E-value=9.4e-23  Score=166.89  Aligned_cols=226  Identities=12%  Similarity=0.049  Sum_probs=178.3

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      ...+...|.++...|++++|+..|.+++     .+..+. ...+..+.++..+|.+|...|++++|+.+|++++++.|..
T Consensus        37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al-----~~~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~  110 (292)
T 1qqe_A           37 ADLCVQAATIYRLRKELNLAGDSFLKAA-----DYQKKA-GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR  110 (292)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHH-----HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHh-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            3445557889999999999999999975     121111 1112336799999999999999999999999999987754


Q ss_pred             ------HHHHHHhhhHHHhh-ccHHHHHHHHHHHhccCCCC------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC
Q psy3701         112 ------LPAWLMYGHSFAVE-NEHDQAMAAYFNAFNLFKGC------HLPALYVGLECGLTNNARLASKFFDLALSIAHE  178 (342)
Q Consensus       112 ------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (342)
                            ..++..+|.++... |++++|+..|++++++.|..      ..++..+|.++..+|++++|+..|++++...|+
T Consensus       111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  190 (292)
T 1qqe_A          111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence                  46789999999996 99999999999999998764      356778999999999999999999999999987


Q ss_pred             ChH-------HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701         179 DPF-------VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP  251 (342)
Q Consensus       179 ~~~-------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
                      +..       .+..+|.++..+|++++|+..|+++++++|...                               ......
T Consensus       191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------------------------------~~~~~~  239 (292)
T 1qqe_A          191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-------------------------------DSRESN  239 (292)
T ss_dssp             CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------------------------------------HH
T ss_pred             CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-------------------------------CcHHHH
Confidence            653       578999999999999999999999999999873                               111123


Q ss_pred             HHHHHHHHHH--HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Q psy3701         252 LLNNLGHVNR--KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQ  294 (342)
Q Consensus       252 ~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  294 (342)
                      .+..++..+.  ..+++++|+..|++++.++|....++..+-...
T Consensus       240 ~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            4555666664  567899999999999998887776666555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=171.73  Aligned_cols=234  Identities=12%  Similarity=0.017  Sum_probs=182.0

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc--------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC-
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL--------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF-  142 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  142 (342)
                      ..+|....++..+|.++...|++++|+.++++++++        .|....++..+|.++...|++++|+..+++++... 
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            346778899999999999999999999999999984        67778899999999999999999999999999873 


Q ss_pred             -------CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhcChhHHHHHHHHHH
Q psy3701         143 -------KGCHLPALYVGLECGLTNNARLASKFFDLALSIA--------HEDPFVIHEMGVIAYQNHNYTVAENCFMEAL  207 (342)
Q Consensus       143 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  207 (342)
                             |....++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+.++++++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                   5556788889999999999999999999999874        4556789999999999999999999999999


Q ss_pred             HhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-----
Q psy3701         208 SKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-----  282 (342)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----  282 (342)
                      +......                            ....+....++..+|.++...|++++|+..++++++..|.     
T Consensus       181 ~~~~~~~----------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  232 (311)
T 3nf1_A          181 EIYQTKL----------------------------GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS  232 (311)
T ss_dssp             HHHHHTS----------------------------CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHh----------------------------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            9832220                            0001112578999999999999999999999999976432     


Q ss_pred             ----ch------HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         283 ----KA------STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       283 ----~~------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                          ..      ..+...+..+...+.+.+|...++++....|....++..++.++...++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  293 (311)
T 3nf1_A          233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK  293 (311)
T ss_dssp             -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC
T ss_pred             CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC
Confidence                22      3344445555667788888999999999999999999999999877653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=6.6e-20  Score=162.69  Aligned_cols=189  Identities=10%  Similarity=-0.001  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHhhcCCCcHHHHHHhhhHHHh-------hccHH-------HHHHHHHHHhc-cCCCCchHHHHHHHHHhhh
Q psy3701          95 DPARRFLGKATSLDKLFLPAWLMYGHSFAV-------ENEHD-------QAMAAYFNAFN-LFKGCHLPALYVGLECGLT  159 (342)
Q Consensus        95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~l~~~~~~~  159 (342)
                      .+++..|++++..+|.++.+|+.+|..+..       .|+++       +|+..|+++++ ..|++...|..++..+...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            367788888888888888888888888875       68876       88888999987 7888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHH
Q psy3701         160 NNARLASKFFDLALSIAHEDP-FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVK  238 (342)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (342)
                      |++++|...|+++++..|.++ .+|..+|.++...|++++|+..|+++++..|..                         
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~-------------------------  389 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-------------------------  389 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC-------------------------
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc-------------------------
Confidence            899999999999888888875 588888888888888889999998888876654                         


Q ss_pred             HhchhccCCCChHHHHHHHHH-HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc
Q psy3701         239 QLGGEIIADKWEPLLNNLGHV-NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  317 (342)
                                 ...+...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++|+..|++++...|.+
T Consensus       390 -----------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          390 -----------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             -----------THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             -----------hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence                       3555555544 3468999999999999999999999999999999999999999999999999988776


Q ss_pred             hh
Q psy3701         318 SF  319 (342)
Q Consensus       318 ~~  319 (342)
                      +.
T Consensus       459 ~~  460 (530)
T 2ooe_A          459 PE  460 (530)
T ss_dssp             GG
T ss_pred             HH
Confidence            64

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.88  E-value=4.6e-22  Score=157.58  Aligned_cols=208  Identities=12%  Similarity=0.004  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHh-------hhHHHhhccHHHHHHHHHHHhccCCCCchHHHH-
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMY-------GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY-  151 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-  151 (342)
                      .++..|.-+ ..+++..|...|.++++++|+.+++|..+       +.++...++..+++..+++.+.+.|....+++. 
T Consensus         9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~   87 (282)
T 4f3v_A            9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI   87 (282)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence            345555555 58999999999999999999999999999       899999999999999999999999886555554 


Q ss_pred             --------------------HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh-
Q psy3701         152 --------------------VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKV-  210 (342)
Q Consensus       152 --------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-  210 (342)
                                          ++.++...|++++|.+.|...+...|++. ..+.+|.++++.++|++|+..|+++.... 
T Consensus        88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d  166 (282)
T 4f3v_A           88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD  166 (282)
T ss_dssp             CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred             CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence                                67889999999999999999999999888 99999999999999999999998765542 


Q ss_pred             hhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC--CC-chHHH
Q psy3701         211 KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA--PM-KASTF  287 (342)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~  287 (342)
                      |...                                   ..+++.+|.++..+|++++|+.+|++++.-.  |. .+.++
T Consensus       167 ~~~~-----------------------------------~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~  211 (282)
T 4f3v_A          167 KFLA-----------------------------------GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIA  211 (282)
T ss_dssp             HHHH-----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHH
T ss_pred             cccH-----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHH
Confidence            1110                                   2589999999999999999999999998644  55 66799


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         288 CCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       288 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                      +.+|.++..+|+.++|...|++++..+|+ +.+...|.
T Consensus       212 ~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          212 WYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            99999999999999999999999999999 77766653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.88  E-value=3.3e-20  Score=150.50  Aligned_cols=207  Identities=12%  Similarity=-0.026  Sum_probs=190.5

Q ss_pred             HHhCC-hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc--cHHHHHHHHHHHhccCCCCchHHHHHHHHH----hhh--
Q psy3701          89 YLIGR-SDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN--EHDQAMAAYFNAFNLFKGCHLPALYVGLEC----GLT--  159 (342)
Q Consensus        89 ~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~l~~~~----~~~--  159 (342)
                      ...|. .++|+..+.+++.++|++..+|...+.++...|  ++++++..+.+++..+|.+..+|...+.++    ...  
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence            34444 469999999999999999999999999999999  999999999999999999999999999998    666  


Q ss_pred             -CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh--HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHH
Q psy3701         160 -NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT--VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDK  236 (342)
Q Consensus       160 -~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                       +++++++..+.++++.+|.+..+|...+.+....|+++  +++.+++++++.+|.+                       
T Consensus       123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N-----------------------  179 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN-----------------------  179 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC-----------------------
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC-----------------------
Confidence             78999999999999999999999999999999999999  9999999999999999                       


Q ss_pred             HHHhchhccCCCChHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH-HHHHHHH
Q psy3701         237 VKQLGGEIIADKWEPLLNNLGHVNRKLKK------YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS-AVNYFHK  309 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~  309 (342)
                                   ..+|...+.++...|+      ++++++++++++..+|++..+|..++.++...|+... ...++.+
T Consensus       180 -------------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~  246 (306)
T 3dra_A          180 -------------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQ  246 (306)
T ss_dssp             -------------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred             -------------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence                         5899999999999887      9999999999999999999999999999999998655 5567788


Q ss_pred             HHhcc---cCchhHHhHHHHHHHHh
Q psy3701         310 TMALK---RDDSFATTMLSYVIEQL  331 (342)
Q Consensus       310 al~~~---p~~~~~~~~l~~~~~~~  331 (342)
                      ++.++   |.++.++..++.++.+.
T Consensus       247 ~~~~~~~~~~s~~al~~la~~~~~~  271 (306)
T 3dra_A          247 FVDLEKDQVTSSFALETLAKIYTQQ  271 (306)
T ss_dssp             TEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred             HHhccCCCCCCHHHHHHHHHHHHcc
Confidence            88776   88999999999888643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.88  E-value=6.9e-21  Score=149.70  Aligned_cols=171  Identities=10%  Similarity=-0.042  Sum_probs=154.2

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS---AIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      ....++.+|..+...|++++|+..|++.            +...|.+   ..+++.+|.+++..|++++|+..|+++++.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~------------~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEAL------------DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHH------------HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3456788999999999999999999995            5777765   579999999999999999999999999999


Q ss_pred             CCCcHH---HHHHhhhHHHh------------------hccHHHHHHHHHHHhccCCCCchHH-----------------
Q psy3701         108 DKLFLP---AWLMYGHSFAV------------------ENEHDQAMAAYFNAFNLFKGCHLPA-----------------  149 (342)
Q Consensus       108 ~~~~~~---~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~-----------------  149 (342)
                      +|+++.   +++.+|.++..                  .|++++|+..|+++++..|++..+.                 
T Consensus        71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~  150 (225)
T 2yhc_A           71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE  150 (225)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence            998864   78899988876                  5799999999999999999988665                 


Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         150 LYVGLECGLTNNARLASKFFDLALSIAHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      ..+|.++...|++++|+..|+++++..|+++   .++..+|.++..+|++++|+..++++....|++
T Consensus       151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence            5678899999999999999999999999986   679999999999999999999999998888876

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.88  E-value=2.3e-20  Score=158.30  Aligned_cols=295  Identities=11%  Similarity=-0.012  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-H----HHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS-A----IAWYAVGCYYYLIGRSDPARRFLGK  103 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~  103 (342)
                      .....++..+|.++...|++++|+..+++++            ...|.. .    .++..+|.++...|++++|+..+++
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   78 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLAL------------EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ   78 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3456677789999999999999999999974            444433 2    3678899999999999999999999


Q ss_pred             HhhcCCCcH------HHHHHhhhHHHhhccHHHHHHHHHHHhccCC--------CCchHHHHHHHHHhhhCCHHHHHHHH
Q psy3701         104 ATSLDKLFL------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFK--------GCHLPALYVGLECGLTNNARLASKFF  169 (342)
Q Consensus       104 a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~  169 (342)
                      ++...|...      .++..+|.++...|++++|+..+++++...+        ....++..+|.++...|++++|...+
T Consensus        79 al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  158 (373)
T 1hz4_A           79 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA  158 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            998765432      3467899999999999999999999998753        23345667999999999999999999


Q ss_pred             HHHHhhCCCC-----hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc-----hhhHHHHhhhhHHHHHHH
Q psy3701         170 DLALSIAHED-----PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK-----WEPLLNNLGHKAEDKVKQ  239 (342)
Q Consensus       170 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  239 (342)
                      ++++...+..     ..++..+|.++...|++++|...+++++.+.+..........     ....+...|+. .++...
T Consensus       159 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~  237 (373)
T 1hz4_A          159 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK-AAAANW  237 (373)
T ss_dssp             HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred             HHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH-HHHHHH
Confidence            9999987753     457889999999999999999999999988655321100000     00112222322 233333


Q ss_pred             hchhc-cCCC----ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701         240 LGGEI-IADK----WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM------KASTFCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       240 ~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                      +.... ..+.    ....+..+|.++...|++++|+..+++++...+.      ...++..+|.++...|++++|...++
T Consensus       238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  317 (373)
T 1hz4_A          238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  317 (373)
T ss_dssp             HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            33211 1111    1235678999999999999999999999876542      22478889999999999999999999


Q ss_pred             HHHhcccCchhHHhH------HHHHHHHhhhcCC
Q psy3701         309 KTMALKRDDSFATTM------LSYVIEQLIEESP  336 (342)
Q Consensus       309 ~al~~~p~~~~~~~~------l~~~~~~~~~~~~  336 (342)
                      +++.+.+........      +..++..+....|
T Consensus       318 ~al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~  351 (373)
T 1hz4_A          318 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT  351 (373)
T ss_dssp             HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhccccHHHHHHHccHHHHHHHHHHHhCCC
Confidence            999998876644433      3445555554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.88  E-value=8.6e-22  Score=139.69  Aligned_cols=121  Identities=12%  Similarity=0.099  Sum_probs=107.1

Q ss_pred             HHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701         172 ALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP  251 (342)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
                      +..++|+....+..+|..++..|+|++|+..|+++++++|.+                                    +.
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~   48 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------------------------------------AI   48 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HH
Confidence            345778888888899999999999999999999999998888                                    58


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      ++.++|.++..+|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..|+.++
T Consensus        49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988888764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.88  E-value=7e-20  Score=149.82  Aligned_cols=238  Identities=7%  Similarity=-0.066  Sum_probs=199.2

Q ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHhhcCCCcHHHHHHhhhH
Q psy3701          43 EALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDKLFLPAWLMYGHS  121 (342)
Q Consensus        43 ~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~  121 (342)
                      ...+..++|++++.+            ++..+|++..+|+..+.+....| .+++++.++++++..+|++..+|...+.+
T Consensus        65 ~~~e~se~AL~lt~~------------~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl  132 (349)
T 3q7a_A           65 AKEEKSERALELTEI------------IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL  132 (349)
T ss_dssp             HTTCCSHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHH------------HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            334444556666666            57999999999999999999999 59999999999999999999999999999


Q ss_pred             HHhh-c-cHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHH--------HHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         122 FAVE-N-EHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNAR--------LASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       122 ~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      +... + ++++++..+.++++.+|.+..+|...+.+....|.++        ++++.++++++.+|.+..+|...+.++.
T Consensus       133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV  212 (349)
T ss_dssp             HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9998 8 8999999999999999999999999999999998888        9999999999999999999999999999


Q ss_pred             HhcC-------hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh
Q psy3701         192 QNHN-------YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK  264 (342)
Q Consensus       192 ~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  264 (342)
                      ..++       ++++++++++++..+|.+                                    ..+|+.+..++...|
T Consensus       213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~n------------------------------------~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          213 SRPGAETSSRSLQDELIYILKSIHLIPHN------------------------------------VSAWNYLRGFLKHFS  256 (349)
T ss_dssp             TSTTCCCCHHHHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTT
T ss_pred             hccccccchHHHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHhcC
Confidence            9887       689999999999999999                                    478888777777766


Q ss_pred             hH--------------------HHHHHHHHHHHhhC------CCchHHHHHHHHHHHHhCChHHHHHHHHHHH-hcccCc
Q psy3701         265 KY--------------------EEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTM-ALKRDD  317 (342)
Q Consensus       265 ~~--------------------~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~  317 (342)
                      +.                    .+-.+.+...+...      +.++.++..++.+|...|+.++|.+.|+... +.+|-.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir  336 (349)
T 3q7a_A          257 LPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR  336 (349)
T ss_dssp             CCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred             CCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence            53                    22333333332222      4567788899999999999999999999987 678887


Q ss_pred             hhHHhHHHHHH
Q psy3701         318 SFATTMLSYVI  328 (342)
Q Consensus       318 ~~~~~~l~~~~  328 (342)
                      ...|......+
T Consensus       337 ~~yw~~~~~~~  347 (349)
T 3q7a_A          337 AGYWEFRRREC  347 (349)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            77776655443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.87  E-value=7.6e-22  Score=149.05  Aligned_cols=170  Identities=8%  Similarity=-0.109  Sum_probs=148.1

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG  153 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  153 (342)
                      +|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++......+
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            3445567889999999999999999999999999999999999999999999999999999999999999 776655555


Q ss_pred             HHH-hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701         154 LEC-GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK  232 (342)
Q Consensus       154 ~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  232 (342)
                      .+. ...+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|...                  
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------------------  142 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ------------------  142 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT------------------
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC------------------
Confidence            443 2334555689999999999999999999999999999999999999999999998752                  


Q ss_pred             HHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701         233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV  278 (342)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  278 (342)
                                      ...++..+|.++...|+.++|+..|++++.
T Consensus       143 ----------------~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          143 ----------------DGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             ----------------TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             ----------------hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence                            135899999999999999999999999875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.87  E-value=1.6e-21  Score=138.28  Aligned_cols=121  Identities=13%  Similarity=0.002  Sum_probs=115.6

Q ss_pred             HHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701          70 LVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA  149 (342)
Q Consensus        70 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  149 (342)
                      +..++|+.++.+..+|..++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..++++++++|+++.++
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            44679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         150 LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                      +.+|.++..+|++++|++.|+++++++|++..++..++.++
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999888764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.87  E-value=1.7e-21  Score=147.18  Aligned_cols=168  Identities=14%  Similarity=-0.012  Sum_probs=149.8

Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG  187 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  187 (342)
                      +|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            3455567889999999999999999999999999999999999999999999999999999999999999 887777666


Q ss_pred             HHHH-HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701         188 VIAY-QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY  266 (342)
Q Consensus       188 ~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (342)
                      .+.. ..++..+|+..++++++.+|++                                    ..+++.+|.++...|++
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~------------------------------------~~~~~~la~~~~~~g~~  124 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDN------------------------------------FELACELAVQYNQVGRD  124 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHcccH
Confidence            5543 3345567899999999999998                                    58999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         267 EEALEFHKQALVVAPMK--ASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       267 ~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      ++|+..|+++++.+|+.  ..++..+|.++...|+.++|+..|++++.
T Consensus       125 ~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          125 EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999876  56999999999999999999999999875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.87  E-value=3.8e-20  Score=157.23  Aligned_cols=221  Identities=13%  Similarity=0.095  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcCC------CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------c
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLDK------LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------H  146 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~  146 (342)
                      .++.+|..+...|++++|+.+|++++.+.+      ..+.++..+|.++...|++++|+..++++++..+..       .
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            577889999999999999999999998743      245689999999999999999999999999876542       3


Q ss_pred             hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         147 LPALYVGLECGLTNNARLASKFFDLALSIAHE------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      .++..+|.++...|++++|++.+++++.+.+.      ...++.++|.++...|++++|+.++++++.+.+...      
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~------  256 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV------  256 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC------
Confidence            45678999999999999999999999986432      235788999999999999999999999999654331      


Q ss_pred             chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC-----CchHHHHHHHHHHH
Q psy3701         221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP-----MKASTFCCIGYIQA  295 (342)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~  295 (342)
                                               .+....++..+|.++...|++++|+.+++++++..+     .....+..++.++.
T Consensus       257 -------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~  311 (378)
T 3q15_A          257 -------------------------PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK  311 (378)
T ss_dssp             -------------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred             -------------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                                     122267899999999999999999999999999854     33455677888888


Q ss_pred             HhCC---hHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         296 LTGD---LDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       296 ~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ..|+   +.+|+.++++. ...|........++.++...+
T Consensus       312 ~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g  350 (378)
T 3q15_A          312 ETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC  350 (378)
T ss_dssp             SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence            8888   88888888873 344555566677777776544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.87  E-value=1.4e-20  Score=153.37  Aligned_cols=169  Identities=12%  Similarity=0.011  Sum_probs=144.9

Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG  187 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  187 (342)
                      .|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            37778888888888888888888888888888888888888888888888888888888888888888886666666777


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      ..+...++.++|+..+++++..+|++                                    ..+++++|.++...|+++
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~------------------------------------~~~~~~la~~l~~~g~~~  236 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPED------------------------------------AALATQLALQLHQVGRNE  236 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCcc------------------------------------HHHHHHHHHHHHHcccHH
Confidence            77888888888888899998888888                                    578888999999999999


Q ss_pred             HHHHHHHHHHhhCCCc--hHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         268 EALEFHKQALVVAPMK--ASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       268 ~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      +|+..|+++++.+|++  ..++..++.++...|+.++|...|++++.
T Consensus       237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999988887  77888899999999998899888888875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.87  E-value=9.3e-21  Score=154.47  Aligned_cols=172  Identities=10%  Similarity=-0.022  Sum_probs=161.2

Q ss_pred             cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      ..|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999766666667


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhh
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHK  232 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  232 (342)
                      +..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+..                  
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~------------------  253 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA------------------  253 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG------------------
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc------------------
Confidence            77788999999999999999999999999999999999999999999999999999999872                  


Q ss_pred             HHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701         233 AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV  278 (342)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  278 (342)
                                      ...++..++.++...|+.++|+..|++++.
T Consensus       254 ----------------~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          254 ----------------DGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             ----------------GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ----------------cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence                            137899999999999999999999999875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.87  E-value=7e-20  Score=158.82  Aligned_cols=258  Identities=12%  Similarity=0.011  Sum_probs=132.7

Q ss_pred             HHHHHhHHHHhhccH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-----ChHHHHHHHHHHh
Q psy3701          34 LLLLKGRVYEALENR---ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-----RSDPARRFLGKAT  105 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~---~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~  105 (342)
                      .++.+|.++...|+.   ++|+..|+++            ++.   ++.+++.+|.++...+     ++++|+.+|++++
T Consensus        37 A~~~Lg~~y~~~g~~~d~~~A~~~~~~A------------~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa  101 (452)
T 3e4b_A           37 AQVGLADIQVGTRDPAQIKQAEATYRAA------------ADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAF  101 (452)
T ss_dssp             GGGTCC-------------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHH------------HhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHH
Confidence            344455555555555   5555555554            332   5666777777555544     5667777777776


Q ss_pred             hcCCCcHHHHHHhhhHHHhhcc---------------------------------------HHHHHHHHHHHhccCCCCc
Q psy3701         106 SLDKLFLPAWLMYGHSFAVENE---------------------------------------HDQAMAAYFNAFNLFKGCH  146 (342)
Q Consensus       106 ~~~~~~~~~~~~la~~~~~~g~---------------------------------------~~~A~~~~~~al~~~~~~~  146 (342)
                      +..+  +.+++.+|.+|...+.                                       .+.+..+++.+...+|   
T Consensus       102 ~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---  176 (452)
T 3e4b_A          102 ANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---  176 (452)
T ss_dssp             HTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---
T ss_pred             HCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---
Confidence            6432  2244444444433322                                       2223333333333333   


Q ss_pred             hHHHHHHHHHhhhC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh----cChhHHHHHHHHHHHhhhhcCccccc
Q psy3701         147 LPALYVGLECGLTN---NARLASKFFDLALSIAHEDPFVIHEMGVIAYQN----HNYTVAENCFMEALSKVKQLGGEIIA  219 (342)
Q Consensus       147 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~  219 (342)
                      .+++.+|.++...|   ++++|+.+|+++.+..|.....++.+|.+|...    +++++|+.+|+++.   |.++     
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~-----  248 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP-----  248 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST-----
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH-----
Confidence            36666666666666   667777777777776666666666677666544    56667777777665   4443     


Q ss_pred             cchhhHHHHhhhh---------HHHHHHHhchhccCCCChHHHHHHHHHHHHhh-----hHHHHHHHHHHHHhhCCCchH
Q psy3701         220 DKWEPLLNNLGHK---------AEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----KYEEALEFHKQALVVAPMKAS  285 (342)
Q Consensus       220 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~  285 (342)
                          .++.+++..         ..++...+.... ....+.+++++|.+|. .|     ++++|+.+|+++.   +.++.
T Consensus       249 ----~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~  319 (452)
T 3e4b_A          249 ----ASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA  319 (452)
T ss_dssp             ----HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred             ----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence                222222221         223333333322 1224567777777776 44     7777777777776   66777


Q ss_pred             HHHHHHHHHHH----hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         286 TFCCIGYIQAL----TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       286 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      +++++|.+|..    ..++++|+.+|+++.+  ++++.+...|+.++..
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ  366 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence            77777776665    3377777777777765  3556667777776653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.86  E-value=1.1e-19  Score=157.60  Aligned_cols=275  Identities=12%  Similarity=0.004  Sum_probs=196.8

Q ss_pred             HHHHHHHHhHHHHhhc-----cHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhcCCCcHHHHH
Q psy3701          31 KSALLLLKGRVYEALE-----NRALAADCYKGALL-----------------------ADLFKLAHELVDLYPDSAIAWY   82 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~-----~~~~A~~~~~~~~~-----------------------~~a~~~~~~~~~~~p~~~~~~~   82 (342)
                      ....++.+|.++...+     ++++|+..|+++..                       .++...+.+..  .+.++.+++
T Consensus        68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~--~~g~~~a~~  145 (452)
T 3e4b_A           68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQ--AAGYPEAGL  145 (452)
T ss_dssp             ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHH--HHTCTTHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH--HCCCHHHHH
Confidence            5667778888665554     88999999998752                       01111222111  123456677


Q ss_pred             HHHHHHHHhCChHHHH----HHHHHHhhcCCCcHHHHHHhhhHHHhhc---cHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701          83 AVGCYYYLIGRSDPAR----RFLGKATSLDKLFLPAWLMYGHSFAVEN---EHDQAMAAYFNAFNLFKGCHLPALYVGLE  155 (342)
Q Consensus        83 ~l~~~~~~~~~~~~A~----~~~~~a~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~  155 (342)
                      .+|.+|...+.++++.    .+++.+...+|   .+++.+|.++...|   ++++|+..|+++.+..|.....++.+|.+
T Consensus       146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~  222 (452)
T 3e4b_A          146 AQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARV  222 (452)
T ss_dssp             HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            7777777777544443    34444444444   38888888888888   88899999999988888877777888888


Q ss_pred             Hhhh----CCHHHHHHHHHHHHhhCCCChHHHHHHHHH-H--HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701         156 CGLT----NNARLASKFFDLALSIAHEDPFVIHEMGVI-A--YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN  228 (342)
Q Consensus       156 ~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      |...    +++++|+.+|+++.   |+++.+++.+|.+ +  ...+++++|+.+|+++.+....           .+..+
T Consensus       223 y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~-----------~A~~~  288 (452)
T 3e4b_A          223 LGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQP-----------RAELL  288 (452)
T ss_dssp             HTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCH-----------HHHHH
T ss_pred             HhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCH-----------HHHHH
Confidence            8765    68889999998887   8888888999988 4  4678889999999988865421           22223


Q ss_pred             hhh----------hHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Q psy3701         229 LGH----------KAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQ  294 (342)
Q Consensus       229 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  294 (342)
                      ++.          ...++...+....  +..+.+++++|.+|..    ..++++|+.+|+++.+  +.++.+.+++|.+|
T Consensus       289 Lg~~y~~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y  364 (452)
T 3e4b_A          289 LGKLYYEGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLF  364 (452)
T ss_dssp             HHHHHHHCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHH
Confidence            332          3445555565555  7778999999999987    3499999999999987  46788999999999


Q ss_pred             HH----hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         295 AL----TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       295 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ..    ..++.+|..+|+++.+..  ++.+...+..+...
T Consensus       365 ~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~  402 (452)
T 3e4b_A          365 SQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAP  402 (452)
T ss_dssp             HSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTT
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHh
Confidence            85    569999999999999875  45666666666443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.86  E-value=8.6e-19  Score=142.88  Aligned_cols=200  Identities=8%  Similarity=-0.022  Sum_probs=180.3

Q ss_pred             HhCChH-HHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc----------HHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701          90 LIGRSD-PARRFLGKATSLDKLFLPAWLMYGHSFAVENE----------HDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus        90 ~~~~~~-~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      ..|.++ +|+.++.+++.++|++..+|...+.++...+.          +++++.++..++..+|.+..+|...+.++..
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~  120 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  120 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence            456654 89999999999999999999999999988876          6899999999999999999999999999999


Q ss_pred             hCC--HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC-hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701         159 TNN--ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN-YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED  235 (342)
Q Consensus       159 ~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                      .++  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+                      
T Consensus       121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N----------------------  178 (331)
T 3dss_A          121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN----------------------  178 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC----------------------
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC----------------------
Confidence            984  8999999999999999999999999999999999 599999999999999999                      


Q ss_pred             HHHHhchhccCCCChHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh----
Q psy3701         236 KVKQLGGEIIADKWEPLLNNLGHVNRKL--------------KKYEEALEFHKQALVVAPMKASTFCCIGYIQALT----  297 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~----  297 (342)
                                    ..+|..++.++...              +.++++++++.+++..+|++..+|+.+..++...    
T Consensus       179 --------------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~  244 (331)
T 3dss_A          179 --------------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC  244 (331)
T ss_dssp             --------------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred             --------------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence                          58999999998877              7799999999999999999999998766666554    


Q ss_pred             -------CChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         298 -------GDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       298 -------g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                             +.++++++++.+++++.|++......+.
T Consensus       245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~  279 (331)
T 3dss_A          245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTII  279 (331)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence                   4578999999999999999965544443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.86  E-value=3.4e-20  Score=165.93  Aligned_cols=165  Identities=14%  Similarity=0.064  Sum_probs=129.2

Q ss_pred             hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701          91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFD  170 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  170 (342)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47788899999999999998888999999999999999999999999999999888888889999999999999999999


Q ss_pred             HHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCCh
Q psy3701         171 LALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWE  250 (342)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
                      ++++.+|+++.++..+|.++...|++++|+..|+++++.+|++                                    .
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~  125 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------------------------------------P  125 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------H
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------H
Confidence            9999999888899999999999999999999999999888887                                    5


Q ss_pred             HHHHHHHHHHHHh---hhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701         251 PLLNNLGHVNRKL---KKYEEALEFHKQALVVAPMKASTFCCIG  291 (342)
Q Consensus       251 ~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~l~  291 (342)
                      .++..+|.++...   |++++|+..++++++.+|++...+..++
T Consensus       126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            7888899999888   8999999999999998888877776665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.86  E-value=1.9e-20  Score=167.52  Aligned_cols=164  Identities=11%  Similarity=0.013  Sum_probs=139.1

Q ss_pred             hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHH
Q psy3701         125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFM  204 (342)
Q Consensus       125 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  204 (342)
                      .|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch
Q psy3701         205 EALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA  284 (342)
Q Consensus       205 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  284 (342)
                      ++++.+|++                                    ..++.++|.++...|++++|+..|+++++.+|++.
T Consensus        82 ~al~~~p~~------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  125 (568)
T 2vsy_A           82 QASDAAPEH------------------------------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP  125 (568)
T ss_dssp             HHHHHCTTC------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhcCCCC------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            999999988                                    58999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh---CChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701         285 STFCCIGYIQALT---GDLDSAVNYFHKTMALKRDDSFATTML  324 (342)
Q Consensus       285 ~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l  324 (342)
                      .++..+|.++..+   |++++|...++++++.+|++...+..+
T Consensus       126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  168 (568)
T 2vsy_A          126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL  168 (568)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence            9999999999999   999999999999999999876655443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.85  E-value=6.5e-21  Score=157.11  Aligned_cols=203  Identities=11%  Similarity=0.011  Sum_probs=117.3

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCc---HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc------HH
Q psy3701          44 ALENRALAADCYKGALLADLFKLAHE-LVDLYPDS---AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF------LP  113 (342)
Q Consensus        44 ~~~~~~~A~~~~~~~~~~~a~~~~~~-~~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~  113 (342)
                      ..|++++|.++++++...     ... .....++.   ...+...|.+|...|++++|+.+|.+++++.+..      ..
T Consensus         3 ~~~~~~eA~~~~~~a~k~-----~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~   77 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKY-----LKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAK   77 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHH-----HCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHH-----ccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            467888888888876410     000 00001111   2234445666666677777777777666654322      34


Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHHhccCCCC------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hH
Q psy3701         114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------HLPALYVGLECGLTNNARLASKFFDLALSIAHED------PF  181 (342)
Q Consensus       114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~  181 (342)
                      ++..+|.++...|++++|+.+|++++++.+..      ..++..+|.+|.. |++++|+.+|++++.+.|..      ..
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~  156 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE  156 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence            56666666666677777777777666654321      2344556666666 66666666666666665544      34


Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701         182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR  261 (342)
Q Consensus       182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (342)
                      ++..+|.++..+|++++|+..|++++.+.|...                              ..+.....+..+|.++.
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------~~~~~~~~~~~~g~~~~  206 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEME------------------------------NYPTCYKKCIAQVLVQL  206 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------------------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC------------------------------ChhHHHHHHHHHHHHHH
Confidence            556666666666666666666666666666652                              11111225555666666


Q ss_pred             HhhhHHHHHHHHHHHHhhCCCc
Q psy3701         262 KLKKYEEALEFHKQALVVAPMK  283 (342)
Q Consensus       262 ~~g~~~~A~~~~~~al~~~~~~  283 (342)
                      ..|++++|+..|++++ .+|..
T Consensus       207 ~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          207 HRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HcCCHHHHHHHHHHHh-CCCCC
Confidence            6666666666666666 66644

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.85  E-value=5.4e-21  Score=139.38  Aligned_cols=118  Identities=12%  Similarity=0.006  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhc
Q psy3701         165 ASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI  244 (342)
Q Consensus       165 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
                      +-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|.+                               
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-------------------------------   69 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-------------------------------   69 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------------------
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------------------
Confidence            3344566677788888888888888888888888888888888888887                               


Q ss_pred             cCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         245 IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       245 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                           +.+|.++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|++++++.|+.+
T Consensus        70 -----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           70 -----VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             -----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence                 578888888888888888888888888888888888888888888888888888888888888888765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.84  E-value=4.8e-19  Score=150.11  Aligned_cols=271  Identities=10%  Similarity=-0.076  Sum_probs=190.4

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD---SAIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      ...++..+|.++...|++++|+..+++++     .+.    ...++   ...++..+|.++...|++++|+..+++++..
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~----~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTE-----QMA----RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHH----HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHH-----HHH----HhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34567789999999999999999999975     111    11111   2355788999999999999999999999986


Q ss_pred             C--------CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-----chHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701         108 D--------KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-----HLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       108 ~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      .        |....++..+|.++...|++++|...+++++...+..     ..++..+|.++...|++++|...+++++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~  202 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN  202 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4        3345678889999999999999999999999987753     24567799999999999999999999987


Q ss_pred             hCCC--ChHHHH-----HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccc--cccchhhHHHHhhhhHHHHHHHhch---
Q psy3701         175 IAHE--DPFVIH-----EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEI--IADKWEPLLNNLGHKAEDKVKQLGG---  242 (342)
Q Consensus       175 ~~~~--~~~~~~-----~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---  242 (342)
                      ..+.  .+..+.     ..+.++...|++++|...+++++...+..+...  .......++...|+. .++...+..   
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~l~~a~~  281 (373)
T 1hz4_A          203 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF-EPAEIVLEELNE  281 (373)
T ss_dssp             HHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH
T ss_pred             HHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Confidence            6432  222222     345568899999999999999987665432000  001111222222322 122222221   


Q ss_pred             ----hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         243 ----EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       243 ----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                          .........++..+|.++...|++++|...+++++...+...     ....+...|  +.....+++.+...|-+.
T Consensus       282 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-----~~~~~~~~g--~~~~~ll~~~~~~~~~~~  354 (373)
T 1hz4_A          282 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-----FISHFVIEG--EAMAQQLRQLIQLNTLPE  354 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----CCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred             HHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----HHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence                111122335788899999999999999999999998764321     112233344  677888899999888644

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.84  E-value=1.1e-19  Score=147.62  Aligned_cols=217  Identities=13%  Similarity=0.028  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          29 EMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELV-DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        29 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      .....++..+|.++...|++++|+..|++++     .+..+.. ..+|....++..+|.++...|++++|+.++++++..
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  114 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDAL-----AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  114 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-----HHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999974     2222111 235677889999999999999999999999999988


Q ss_pred             --------CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHhhhCCHHHHHHHHHH
Q psy3701         108 --------DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL--------FKGCHLPALYVGLECGLTNNARLASKFFDL  171 (342)
Q Consensus       108 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  171 (342)
                              +|....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  194 (283)
T 3edt_B          115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE  194 (283)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                    5777889999999999999999999999999998        666677888999999999999999999999


Q ss_pred             HHhh---------CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch
Q psy3701         172 ALSI---------AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG  242 (342)
Q Consensus       172 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (342)
                      ++..         .+.....+..++......+....+..+ ..+........                            
T Consensus       195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------------------------  245 (283)
T 3edt_B          195 ILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACK----------------------------  245 (283)
T ss_dssp             HHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCC----------------------------
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcC----------------------------
Confidence            9986         445566777777777765555444332 22222111110                            


Q ss_pred             hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701         243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA  280 (342)
Q Consensus       243 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  280 (342)
                       ...+....++..+|.++...|++++|+.+++++++..
T Consensus       246 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          246 -VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             -CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence             0112225789999999999999999999999998753

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.84  E-value=7.6e-21  Score=138.61  Aligned_cols=115  Identities=10%  Similarity=0.059  Sum_probs=87.5

Q ss_pred             HHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC
Q psy3701          99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE  178 (342)
Q Consensus        99 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (342)
                      ..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            34566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      ++.+++.+|.++..+|++++|+..|++++++.|+.
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            77777777777777777777777777777777665

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.84  E-value=5e-19  Score=137.57  Aligned_cols=185  Identities=9%  Similarity=-0.060  Sum_probs=129.1

Q ss_pred             HHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC----CHHHHHHHHHH
Q psy3701          96 PARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN----NARLASKFFDL  171 (342)
Q Consensus        96 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~  171 (342)
                      +|+.+|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|++
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            456666666654  45667777777777777777777777777654  456667777777766 5    67777777777


Q ss_pred             HHhhCCCChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhh--cCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701         172 ALSIAHEDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQ--LGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII  245 (342)
Q Consensus       172 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
                      +.+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..+.  .                                
T Consensus        79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~--------------------------------  124 (212)
T 3rjv_A           79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA--------------------------------  124 (212)
T ss_dssp             HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH--------------------------------
T ss_pred             HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch--------------------------------
Confidence            743  4577777777777776    67777888888877777662  2                                


Q ss_pred             CCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh-C-----ChHHHHHHHHHHHhccc
Q psy3701         246 ADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT-G-----DLDSAVNYFHKTMALKR  315 (342)
Q Consensus       246 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~~p  315 (342)
                          +.+++++|.+|..    .+++++|+.+|+++++. |.++.+++++|.+|... |     ++++|+.+|+++.+.. 
T Consensus       125 ----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g-  198 (212)
T 3rjv_A          125 ----VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG-  198 (212)
T ss_dssp             ----HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT-
T ss_pred             ----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC-
Confidence                3677778888877    67788888888888777 56667778888877653 2     7888888888887763 


Q ss_pred             CchhHHhHHHH
Q psy3701         316 DDSFATTMLSY  326 (342)
Q Consensus       316 ~~~~~~~~l~~  326 (342)
                       ++.+...++.
T Consensus       199 -~~~A~~~l~~  208 (212)
T 3rjv_A          199 -FDTGCEEFDR  208 (212)
T ss_dssp             -CHHHHHHHHH
T ss_pred             -CHHHHHHHHH
Confidence             4444554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=1.9e-18  Score=160.68  Aligned_cols=263  Identities=11%  Similarity=0.021  Sum_probs=192.0

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHH-HHH-------HHHHHHHHh--cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc
Q psy3701          38 KGRVYEALENRALAADCYKGALL-ADL-------FKLAHELVD--LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSL  107 (342)
Q Consensus        38 ~g~~~~~~~~~~~A~~~~~~~~~-~~a-------~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  107 (342)
                      .|.++...|.+++|..+|+++.. .+|       +.-++++++  ...+.+.+|+.+|.++...|++++|+..|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            58899999999999999998752 221       112222222  13467999999999999999999999999886   


Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG  187 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  187 (342)
                        +++..+..+|.++...|++++|+++|..+.+..+. +.+...+|.+|.+++++++ ++.|.     ...+...+..+|
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iG 1202 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVG 1202 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHH
Confidence              77899999999999999999999999999988854 3334468899999988885 44332     223445667899


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      ..+...|+|++|..+|.++-..          ......+..+++ .+.+.....+.    ....+|...+.++...|+|.
T Consensus      1203 d~le~eg~YeeA~~~Y~kA~ny----------~rLA~tLvkLge-~q~AIEaarKA----~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1203 DRCYDEKMYDAAKLLYNNVSNF----------GRLASTLVHLGE-YQAAVDGARKA----NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHhcCCHHHHHHHHHhhhHH----------HHHHHHHHHhCC-HHHHHHHHHHh----CCHHHHHHHHHHHhhhhHHH
Confidence            9999999999999999886210          011122222332 23333333222    22356777777777777777


Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         268 EALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       268 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      .|..+... +..   +++.+..++..|...|.+++|+.++++++.++|.+...+..|+.++.++
T Consensus      1268 LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1268 LAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence            77766553 332   3445568889999999999999999999999999999999898887664

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.83  E-value=1.1e-21  Score=163.47  Aligned_cols=184  Identities=11%  Similarity=-0.017  Sum_probs=138.7

Q ss_pred             CChHHHHHHHHH----HhhcCCCcHHHHHHhhhHHH------------hhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701          92 GRSDPARRFLGK----ATSLDKLFLPAWLMYGHSFA------------VENEHDQAMAAYFNAFNLFKGCHLPALYVGLE  155 (342)
Q Consensus        92 ~~~~~A~~~~~~----a~~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  155 (342)
                      +.+++|+..+++    ++.+.|..  ++...|....            ..+++++|+..+++++...|....++..+|.+
T Consensus        79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~  156 (336)
T 1p5q_A           79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV  156 (336)
T ss_dssp             HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence            355666666666    66666665  4444443332            45566667777777666667667777777777


Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         156 CGLTNNARLASKFFDLALSIAHED---------------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      +...|++++|+..|++++.+.|++               ..++.++|.++...|++++|+..|+++++++|.+       
T Consensus       157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~-------  229 (336)
T 1p5q_A          157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN-------  229 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred             HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------
Confidence            777777777777777777777776               5788888888888888888888888888888887       


Q ss_pred             chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCCh
Q psy3701         221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDL  300 (342)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  300 (342)
                                                   ..+++++|.++..+|++++|+..|+++++++|++..++..++.++...|++
T Consensus       230 -----------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          230 -----------------------------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence                                         578888888888888888888888888888888888888888888888888


Q ss_pred             HHH-HHHHHHHHhc
Q psy3701         301 DSA-VNYFHKTMAL  313 (342)
Q Consensus       301 ~~A-~~~~~~al~~  313 (342)
                      ++| ...|++++..
T Consensus       281 ~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          281 LAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            888 4566666543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.83  E-value=5e-20  Score=149.63  Aligned_cols=198  Identities=14%  Similarity=0.014  Sum_probs=122.3

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL  154 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  154 (342)
                      |.++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666655555666


Q ss_pred             HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      ++...|++++|+..|+++++++|+++..+..........   .++..........                         
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------------------------  132 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEERR-------------------------  132 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHHH-------------------------
Confidence            666666666666666665555554321111111111110   1111111111111                         


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh-CChHHHHHHHHHHHhc
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT-GDLDSAVNYFHKTMAL  313 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~  313 (342)
                                 .+....+...++..+  .|++++|++.++++++.+|++......++.++... +++++|.+.|.++.+.
T Consensus       133 -----------~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          133 -----------IHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             -----------CCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             -----------HhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence                       222235556666654  79999999999999999999988888888888776 7789999999998764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.83  E-value=8.1e-20  Score=133.41  Aligned_cols=126  Identities=13%  Similarity=0.048  Sum_probs=104.6

Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701         166 SKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII  245 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
                      ...+++++..+|++...++.+|.++...|++++|+..|++++..+|.+                                
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------------   54 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--------------------------------   54 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------------
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--------------------------------
Confidence            345777888888888888888888888888888888888888888887                                


Q ss_pred             CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                          +.+|..+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.......
T Consensus        55 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           55 ----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence                5788888888888888888888888888888888888888888888888888888888888888888776554444


Q ss_pred             HH
Q psy3701         326 YV  327 (342)
Q Consensus       326 ~~  327 (342)
                      .+
T Consensus       131 ~~  132 (148)
T 2vgx_A          131 RV  132 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.83  E-value=1.6e-19  Score=143.06  Aligned_cols=207  Identities=14%  Similarity=-0.014  Sum_probs=176.9

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHhCChHHHHHHHHHHhhcC
Q psy3701          36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAV-------GCYYYLIGRSDPARRFLGKATSLD  108 (342)
Q Consensus        36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~a~~~~  108 (342)
                      +..|.-+ ..+++..|...|.++            +..+|+.+++|..+       +.++...++..+++..+++.+.+.
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a------------~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~   77 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEI------------TNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS   77 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHH------------HHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3444444 578999999999995            69999999999999       899999999999999999999988


Q ss_pred             CCcHHHH---------------------HHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHH
Q psy3701         109 KLFLPAW---------------------LMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASK  167 (342)
Q Consensus       109 ~~~~~~~---------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  167 (342)
                      |....++                     ..++.++...|++++|.+.|...+...|++. +.+.+|.++...+++++|+.
T Consensus        78 p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~  156 (282)
T 4f3v_A           78 MSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVID  156 (282)
T ss_dssp             GGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHH
Confidence            8754444                     4477899999999999999999999999888 89999999999999999999


Q ss_pred             HHHHHHhhCCCC--hHHHHHHHHHHHHhcChhHHHHHHHHHHHhh--hhcCccccccchhhHHHHhhhhHHHHHHHhchh
Q psy3701         168 FFDLALSIAHED--PFVIHEMGVIAYQNHNYTVAENCFMEALSKV--KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGE  243 (342)
Q Consensus       168 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
                      .|+++....+..  ..+++.+|.++..+|++++|+..|++++...  |..                              
T Consensus       157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~------------------------------  206 (282)
T 4f3v_A          157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC------------------------------  206 (282)
T ss_dssp             HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT------------------------------
T ss_pred             HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc------------------------------
Confidence            999876643211  3589999999999999999999999998533  221                              


Q ss_pred             ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHH
Q psy3701         244 IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY  292 (342)
Q Consensus       244 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  292 (342)
                           ...+++.+|.++..+|+.++|...|++++..+|+ ..++..|..
T Consensus       207 -----~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          207 -----ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence                 2578999999999999999999999999999999 777666543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.82  E-value=4.3e-21  Score=159.90  Aligned_cols=190  Identities=12%  Similarity=0.040  Sum_probs=166.5

Q ss_pred             HHHHhhccHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH------------HhCChHHHHHHHHH
Q psy3701          40 RVYEALENRALAADCYKG----ALLADLFKLAHELVDLYPDSAIAWYAVGCYYY------------LIGRSDPARRFLGK  103 (342)
Q Consensus        40 ~~~~~~~~~~~A~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~  103 (342)
                      ..+...+.+++|+..++.    +            +...|..  ++...|....            .++++++|+..+++
T Consensus        73 ~~~~~~~~~e~al~~~~~Ge~~~------------l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~  138 (336)
T 1p5q_A           73 ENLDLPYGLERAIQRMEKGEHSI------------VYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEM  138 (336)
T ss_dssp             GGGTCCHHHHHHHTTCCTTCEEE------------EEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGC
T ss_pred             CccccchHHHHHHhcCCCCCeEE------------EEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcC
Confidence            444456678888888887    4            3667765  4555554432            56778899999999


Q ss_pred             HhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---------------chHHHHHHHHHhhhCCHHHHHHH
Q psy3701         104 ATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---------------HLPALYVGLECGLTNNARLASKF  168 (342)
Q Consensus       104 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~  168 (342)
                      ++..+|.++.++..+|.++...|++++|+..|++++.+.|.+               ..++..+|.++...|++++|+..
T Consensus       139 a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  218 (336)
T 1p5q_A          139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES  218 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999998               48999999999999999999999


Q ss_pred             HHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC
Q psy3701         169 FDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK  248 (342)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
                      |+++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+                                   
T Consensus       219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-----------------------------------  263 (336)
T 1p5q_A          219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-----------------------------------  263 (336)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-----------------------------------
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----------------------------------
Confidence            999999999999999999999999999999999999999999998                                   


Q ss_pred             ChHHHHHHHHHHHHhhhHHHH-HHHHHHHHhh
Q psy3701         249 WEPLLNNLGHVNRKLKKYEEA-LEFHKQALVV  279 (342)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~  279 (342)
                       ..++..++.++...|++++| ...|++++..
T Consensus       264 -~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          264 -KAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             58999999999999999999 5577777653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.82  E-value=4.7e-19  Score=145.98  Aligned_cols=205  Identities=12%  Similarity=0.058  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHH
Q psy3701          59 LLADLFKLAHELVDLYPDSAIAWYAVGCYYYL-IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFN  137 (342)
Q Consensus        59 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  137 (342)
                      .+.+|..+++++.+..+..          ++. .+++++|..+|.++              |.++...|++++|+..|.+
T Consensus         6 ~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            6 KISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             HHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHH
Confidence            3456777777776655532          122 57889999888876              5678888999999999999


Q ss_pred             HhccCCCC------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC--C----hHHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701         138 AFNLFKGC------HLPALYVGLECGLTNNARLASKFFDLALSIAHE--D----PFVIHEMGVIAYQNHNYTVAENCFME  205 (342)
Q Consensus       138 al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~  205 (342)
                      ++++.+..      ..++..+|.++...|++++|+.+|++++.+.+.  +    ..++..+|.++.. |++++|+.+|++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            98886542      346677899999999999999999999887543  2    3567889999988 999999999999


Q ss_pred             HHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc--
Q psy3701         206 ALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK--  283 (342)
Q Consensus       206 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--  283 (342)
                      ++.+.+...                              .......++.++|.++..+|++++|+.+|++++++.|.+  
T Consensus       141 Al~~~~~~~------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  190 (307)
T 2ifu_A          141 AAAVFENEE------------------------------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN  190 (307)
T ss_dssp             HHHHHHHTT------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCC------------------------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence            999887653                              011114788999999999999999999999999876543  


Q ss_pred             ----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         284 ----ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       284 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                          ...+..+|.++..+|++++|+.+|++++ ++|+...
T Consensus       191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence                2477888899999999999999999999 8887653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.82  E-value=4.6e-18  Score=139.13  Aligned_cols=218  Identities=6%  Similarity=-0.113  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc-cHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN-EHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      ..++..+..+....+..++|+.++.+++.++|++..+|...+.++...| .+++++..+.+++..+|.+..+|...+.++
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL  133 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL  133 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4445555555555667789999999999999999999999999999999 599999999999999999999999999999


Q ss_pred             hhh-C-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh--------HHHHHHHHHHHhhhhcCccccccchhhHH
Q psy3701         157 GLT-N-NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT--------VAENCFMEALSKVKQLGGEIIADKWEPLL  226 (342)
Q Consensus       157 ~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~  226 (342)
                      ... + +++++++.+.++++.+|.+..+|...+.+....|+++        +++++++++++.+|.+             
T Consensus       134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N-------------  200 (349)
T 3q7a_A          134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN-------------  200 (349)
T ss_dssp             HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC-------------
T ss_pred             HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC-------------
Confidence            988 7 9999999999999999999999999999999999998        9999999999999999             


Q ss_pred             HHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701         227 NNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-------YEEALEFHKQALVVAPMKASTFCCIGYIQALTGD  299 (342)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  299 (342)
                                             ..+|...+.++...++       ++++++++++++..+|++..+|..+..++...|+
T Consensus       201 -----------------------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          201 -----------------------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             -----------------------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             -----------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence                                   5899999999998886       7999999999999999999999999999988887


Q ss_pred             h--------------------HHHHHHHHHHHhcc------cCchhHHhHHHHHHHHh
Q psy3701         300 L--------------------DSAVNYFHKTMALK------RDDSFATTMLSYVIEQL  331 (342)
Q Consensus       300 ~--------------------~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~  331 (342)
                      .                    .+-.......+...      +..+.+...|+.++...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  315 (349)
T 3q7a_A          258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ  315 (349)
T ss_dssp             CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT
T ss_pred             CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhc
Confidence            5                    22222222332222      45667788887777643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.81  E-value=3.5e-18  Score=132.81  Aligned_cols=173  Identities=13%  Similarity=-0.017  Sum_probs=152.4

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc----cHHHHHHHHHHHhccCCCCchHHH
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN----EHDQAMAAYFNAFNLFKGCHLPAL  150 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~  150 (342)
                      ..++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+++.+  +.++.+++
T Consensus        15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~   89 (212)
T 3rjv_A           15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEI   89 (212)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence            478999999999999999999999999999876  578999999999998 7    99999999999965  57889999


Q ss_pred             HHHHHHhh----hCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         151 YVGLECGL----TNNARLASKFFDLALSIAH--EDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       151 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      .+|.+|..    .+++++|+.+|+++.+..|  .++.+++.+|.+|..    .+++++|+.+|+++.+. +.+       
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-------  161 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-------  161 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-------
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-------
Confidence            99999998    8999999999999999887  358999999999999    88999999999999988 444       


Q ss_pred             chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh-h-----hHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701         221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL-K-----KYEEALEFHKQALVVAPMKASTFCCIG  291 (342)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~al~~~~~~~~~~~~l~  291 (342)
                                                   +.+++++|.+|... |     ++++|+.+|+++.+...  ..+...++
T Consensus       162 -----------------------------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~  207 (212)
T 3rjv_A          162 -----------------------------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFD  207 (212)
T ss_dssp             -----------------------------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred             -----------------------------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence                                         36899999999764 3     89999999999998754  44444444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.80  E-value=5.7e-19  Score=128.19  Aligned_cols=126  Identities=16%  Similarity=0.114  Sum_probs=100.6

Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701         167 KFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA  246 (342)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (342)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|.+                                 
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------------   51 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---------------------------------   51 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------------------------
Confidence            45667777778888888888888888888888888888888888877                                 


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                         ..+|..+|.++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+.+|+++++++|+++........
T Consensus        52 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  128 (142)
T 2xcb_A           52 ---ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR  128 (142)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence               57888888888888888888888888888888888888888888888888888888888888888887766555544


Q ss_pred             HH
Q psy3701         327 VI  328 (342)
Q Consensus       327 ~~  328 (342)
                      +.
T Consensus       129 ~~  130 (142)
T 2xcb_A          129 AG  130 (142)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.80  E-value=8.3e-19  Score=128.04  Aligned_cols=116  Identities=15%  Similarity=0.020  Sum_probs=101.1

Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch
Q psy3701          68 HELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL  147 (342)
Q Consensus        68 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  147 (342)
                      ++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.
T Consensus        11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   90 (148)
T 2vgx_A           11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR   90 (148)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred             HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            33568888888889999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI  183 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  183 (342)
                      +++.+|.++...|++++|+..|+++++..|+++...
T Consensus        91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           91 FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            888899999999999999999999988888876553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.80  E-value=5.7e-18  Score=121.42  Aligned_cols=134  Identities=23%  Similarity=0.329  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      .+++.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+...+..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhh
Q psy3701         159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQ  212 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  212 (342)
                      .|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999999999999999999999999998875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.80  E-value=1e-17  Score=120.03  Aligned_cols=133  Identities=23%  Similarity=0.337  Sum_probs=107.7

Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN  227 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  227 (342)
                      ++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|..              
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------------   68 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--------------   68 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--------------
Confidence            566677777778888888888888888788788888888888888888888888888888877766              


Q ss_pred             HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHH
Q psy3701         228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYF  307 (342)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  307 (342)
                                            ...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|..++
T Consensus        69 ----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  126 (136)
T 2fo7_A           69 ----------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY  126 (136)
T ss_dssp             ----------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             ----------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence                                  4677788888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhcccC
Q psy3701         308 HKTMALKRD  316 (342)
Q Consensus       308 ~~al~~~p~  316 (342)
                      +++++.+|+
T Consensus       127 ~~~~~~~~~  135 (136)
T 2fo7_A          127 QKALELDPR  135 (136)
T ss_dssp             HHHHHHSTT
T ss_pred             HHHHccCCC
Confidence            888887775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.79  E-value=6.8e-19  Score=155.77  Aligned_cols=188  Identities=7%  Similarity=-0.035  Sum_probs=156.1

Q ss_pred             hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhcc----------HHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC--C
Q psy3701          94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENE----------HDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN--N  161 (342)
Q Consensus        94 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~  161 (342)
                      .++|+..+++++..+|++..+|...+.++...|+          +++++..+.++++.+|.+..+|...+.++...+  +
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~  124 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence            3567788888888888888888888888877777          788888888888888888888888888888888  6


Q ss_pred             HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc-ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701         162 ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH-NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL  240 (342)
Q Consensus       162 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (342)
                      ++++++.++++++.+|.+..+|...+.+....| .++++++++.++++.+|.+                           
T Consensus       125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n---------------------------  177 (567)
T 1dce_A          125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN---------------------------  177 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC---------------------------
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC---------------------------
Confidence            688888888888888888888888888888888 7888888888888888877                           


Q ss_pred             chhccCCCChHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH----
Q psy3701         241 GGEIIADKWEPLLNNLGHVNRKL--------------KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS----  302 (342)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~----  302 (342)
                               ..+|..++.++...              +.++++++++.+++..+|++..+|+.++.++...+++++    
T Consensus       178 ---------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~  248 (567)
T 1dce_A          178 ---------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCV  248 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEE
T ss_pred             ---------ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeee
Confidence                     47888888877764              789999999999999999999999999999999998776    


Q ss_pred             --------HHHHHHHHHhcccCc
Q psy3701         303 --------AVNYFHKTMALKRDD  317 (342)
Q Consensus       303 --------A~~~~~~al~~~p~~  317 (342)
                              |+.+|.+++.++|..
T Consensus       249 ~~~~~~~~~~~~f~~~i~~~~~~  271 (567)
T 1dce_A          249 HVSREEACLSVCFSRPLTVGSRM  271 (567)
T ss_dssp             EEETTTTEEEEEEEEEECTTBTT
T ss_pred             eeccCCceEEEEeccceeccccc
Confidence                    666788888888764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.79  E-value=2.7e-19  Score=149.68  Aligned_cols=222  Identities=13%  Similarity=0.013  Sum_probs=107.7

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL  112 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  112 (342)
                      .+|..+|.++...|++++|++.|.++                 .++..+..++..+...|++++|+.+++.+.+..++ +
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika-----------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~   94 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKA-----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S   94 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcC-----------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c
Confidence            58889999999999999999999773                 25568888899999999999999999988885444 6


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (342)
                      .+...++.+|.+.|+++++.+.++.     | +..++..+|..+...|++++|..+|.++        ..|..+|.++.+
T Consensus        95 ~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~  160 (449)
T 1b89_A           95 YVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH  160 (449)
T ss_dssp             --------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHH
Confidence            7788899999999999998877742     4 3458889999999999999999999976        358899999999


Q ss_pred             hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH
Q psy3701         193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF  272 (342)
Q Consensus       193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (342)
                      +|++++|++.++++     .+                                    +.+|...+.++...|+++.|..+
T Consensus       161 Lg~yq~AVea~~KA-----~~------------------------------------~~~Wk~v~~aCv~~~ef~lA~~~  199 (449)
T 1b89_A          161 LGEYQAAVDGARKA-----NS------------------------------------TRTWKEVCFACVDGKEFRLAQMC  199 (449)
T ss_dssp             TTCHHHHHHHHHHH-----TC------------------------------------HHHHHHHHHHHHHTTCHHHHHHT
T ss_pred             hccHHHHHHHHHHc-----CC------------------------------------chhHHHHHHHHHHcCcHHHHHHH
Confidence            99999999999998     23                                    47888889999999999999777


Q ss_pred             HHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHh
Q psy3701         273 HKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL  331 (342)
Q Consensus       273 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  331 (342)
                      ... +...|+.   ...+..+|.+.|++++|+.++++++.++|.+...++.|+.++.++
T Consensus       200 ~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          200 GLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             TTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence            665 3344443   446888899999999999999999999999999999998887654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.79  E-value=2.9e-17  Score=134.34  Aligned_cols=176  Identities=10%  Similarity=-0.036  Sum_probs=148.9

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH------HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC--
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC--  145 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--  145 (342)
                      +|.....+...+..+...|++++|+..++++++..|...      ..++.+|.++...|++++|+..+++++...+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            455667778889999999999999999999999877654      346678899999999999999999999876543  


Q ss_pred             ----chHHHHHHHHHhhhCCHHHHHHHHHHHH---hhCCCCh----HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         146 ----HLPALYVGLECGLTNNARLASKFFDLAL---SIAHEDP----FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       146 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                          ..++..+|.+|...|++++|+.+|++++   +..|++.    .+++++|.++..+|++++|+.++++++++.+...
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~  230 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence                3477789999999999999999999999   5566643    5889999999999999999999999999886542


Q ss_pred             ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH-HHHHHHHHhh
Q psy3701         215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA-LEFHKQALVV  279 (342)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~  279 (342)
                                                    .......++.++|.++..+|++++| ..++++++.+
T Consensus       231 ------------------------------~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          231 ------------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             ------------------------------BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ------------------------------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence                                          2223357899999999999999999 7889998865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.78  E-value=3.7e-18  Score=138.60  Aligned_cols=181  Identities=10%  Similarity=0.004  Sum_probs=148.1

Q ss_pred             CCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy3701         109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGV  188 (342)
Q Consensus       109 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  188 (342)
                      |.++..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701         189 IAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE  268 (342)
Q Consensus       189 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  268 (342)
                      ++...|++++|+..|+++++++|+++                               ......++..+        +..+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~-------------------------------~~~~~~~~~~~--------~~~~  121 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQR-------------------------------LNFGDDIPSAL--------RIAK  121 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTT-------------------------------CCCCSHHHHHH--------HHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccch-------------------------------hhHHHHHHHHH--------HHHH
Confidence            99999999999999999999999873                               00001111111        1122


Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      +...........|.+..+...++.+.  .|++++|++.++++++.+|++......+..++..
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  181 (281)
T 2c2l_A          122 KKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAK  181 (281)
T ss_dssp             HHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHH
Confidence            22333333356677788777777765  7999999999999999999988776666554433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.78  E-value=4.4e-18  Score=123.45  Aligned_cols=115  Identities=14%  Similarity=-0.021  Sum_probs=84.0

Q ss_pred             HHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC
Q psy3701          99 RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHE  178 (342)
Q Consensus        99 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (342)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            35666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      ++.+++.+|.++...|++++|+..|+++++++|.+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            77777777777777777777777777777777766

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=7.2e-18  Score=119.69  Aligned_cols=117  Identities=12%  Similarity=0.072  Sum_probs=103.8

Q ss_pred             CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701         178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG  257 (342)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  257 (342)
                      ..+..+..+|..++..|++++|+..|+++++.+|.+                                    +.++.++|
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~~a   45 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------------------------------------ARGYSNRA   45 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------------------------------------hHHHHHHH
Confidence            345678889999999999999999999999998888                                    58899999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcc------cCchhHHhHHHHHHHH
Q psy3701         258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK------RDDSFATTMLSYVIEQ  330 (342)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~  330 (342)
                      .++...|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++      |++..++..+..+...
T Consensus        46 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           46 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999      8888888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=8.5e-19  Score=155.14  Aligned_cols=185  Identities=9%  Similarity=-0.011  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc--cHH
Q psy3701          62 DLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR----------SDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN--EHD  129 (342)
Q Consensus        62 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~  129 (342)
                      +|+..+.+++..+|++..+|+..+.+....|+          +++++.+++++++.+|++..+|...+.++...|  +++
T Consensus        47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~  126 (567)
T 1dce_A           47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA  126 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHH
Confidence            33444444679999999999999999999998          999999999999999999999999999999999  779


Q ss_pred             HHHHHHHHHhccCCCCchHHHHHHHHHhhhC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--------------c
Q psy3701         130 QAMAAYFNAFNLFKGCHLPALYVGLECGLTN-NARLASKFFDLALSIAHEDPFVIHEMGVIAYQN--------------H  194 (342)
Q Consensus       130 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~  194 (342)
                      ++++.+.++++.+|.+..+|.+.+.+....| .++++++++.++++.+|.+..+|...+.++...              +
T Consensus       127 ~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~  206 (567)
T 1dce_A          127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN  206 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH
T ss_pred             HHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHH
Confidence            9999999999999999999999999999999 999999999999999999999999999999885              6


Q ss_pred             ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH------
Q psy3701         195 NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE------  268 (342)
Q Consensus       195 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------  268 (342)
                      .++++++++.+++..+|++.                                    .+|+.++.++...+++++      
T Consensus       207 ~~~eel~~~~~ai~~~P~~~------------------------------------saW~y~~~ll~~~~~~~~~~~~~~  250 (567)
T 1dce_A          207 VLLKELELVQNAFFTDPNDQ------------------------------------SAWFYHRWLLGRAEPHDVLCCVHV  250 (567)
T ss_dssp             HHHHHHHHHHHHHHHCSSCS------------------------------------HHHHHHHHHHSCCCCCSCEEEEEE
T ss_pred             HHHHHHHHHHHHHhhCCCCc------------------------------------cHHHHHHHHHhcCCCccceeeeee
Confidence            68999999999999999994                                    899999999998888666      


Q ss_pred             ------HHHHHHHHHhhCCC
Q psy3701         269 ------ALEFHKQALVVAPM  282 (342)
Q Consensus       269 ------A~~~~~~al~~~~~  282 (342)
                            |+..|.+++.++|.
T Consensus       251 ~~~~~~~~~~f~~~i~~~~~  270 (567)
T 1dce_A          251 SREEACLSVCFSRPLTVGSR  270 (567)
T ss_dssp             ETTTTEEEEEEEEEECTTBT
T ss_pred             ccCCceEEEEeccceecccc
Confidence                  55667777766665

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.78  E-value=1.3e-16  Score=128.01  Aligned_cols=189  Identities=13%  Similarity=0.048  Sum_probs=152.9

Q ss_pred             HHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCC--CCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701          97 ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFK--GCHLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus        97 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      |+..+++.+...+....++..+|.++...|++++|++.+.+.+..+|  .+..++...+.++...|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            56677777766556667778999999999999999999999988887  7778888899999999999999999999988


Q ss_pred             hCCC------ChHHHHHHHHHHHHhc--ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccC
Q psy3701         175 IAHE------DPFVIHEMGVIAYQNH--NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIA  246 (342)
Q Consensus       175 ~~~~------~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (342)
                      .+|+      ...+...-|.+....|  ++++|...|+++.+..|+..                                
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~--------------------------------  212 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK--------------------------------  212 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--------------------------------
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--------------------------------
Confidence            8883      2333333455566666  89999999999887776510                                


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----------CCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV----------APMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                        ....+.+   ++..+|++++|...++.+++.          +|+++.++.+++.+...+|+  +|.++++++.+.+|+
T Consensus       213 --~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          213 --TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             --HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             --cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence              0133333   899999999999999988776          48899999999999999998  899999999999999


Q ss_pred             chhHHhHH
Q psy3701         317 DSFATTML  324 (342)
Q Consensus       317 ~~~~~~~l  324 (342)
                      ++.+...-
T Consensus       286 hp~i~d~~  293 (310)
T 3mv2_B          286 HAFIKHHQ  293 (310)
T ss_dssp             CHHHHHHH
T ss_pred             ChHHHHHH
Confidence            99876653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.77  E-value=5.3e-18  Score=127.98  Aligned_cols=133  Identities=11%  Similarity=0.117  Sum_probs=112.0

Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701         156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED  235 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|.+                      
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------------------   77 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----------------------   77 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----------------------
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------
Confidence            4567888889999999999999999999999999999999999999999999988887                      


Q ss_pred             HHHHhchhccCCCChHHHHHHHHH-HHHhhhH--HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         236 KVKQLGGEIIADKWEPLLNNLGHV-NRKLKKY--EEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                                    ..++..+|.+ +...|++  ++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus        78 --------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           78 --------------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             --------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence                          5788889988 7788888  9999999999999999999999999999999999999999999999


Q ss_pred             cccCchhHHhHH
Q psy3701         313 LKRDDSFATTML  324 (342)
Q Consensus       313 ~~p~~~~~~~~l  324 (342)
                      ++|+++.....+
T Consensus       144 ~~p~~~~~~~~~  155 (177)
T 2e2e_A          144 LNSPRINRTQLV  155 (177)
T ss_dssp             TCCTTSCHHHHH
T ss_pred             hCCCCccHHHHH
Confidence            999887655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.76  E-value=5e-17  Score=132.96  Aligned_cols=178  Identities=10%  Similarity=-0.021  Sum_probs=147.0

Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC--
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH------LPALYVGLECGLTNNARLASKFFDLALSIAHED--  179 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--  179 (342)
                      +|.....+...+..+...|++++|+..+.++++..+...      ..+..+|.++...|++++|+..+++++...+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            344455677888999999999999999999999887644      234568888999999999999999999876543  


Q ss_pred             ----hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC-ChHHHH
Q psy3701         180 ----PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK-WEPLLN  254 (342)
Q Consensus       180 ----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  254 (342)
                          ..++..+|.+|...|++++|+.+|+++++.....+                              ..+. ...++.
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~------------------------------~~~~~~~~~~~  200 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH------------------------------DNEEFDVKVRY  200 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC------------------------------CCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC------------------------------ccccchHHHHH
Confidence                45889999999999999999999999997654432                              0000 125899


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHhCChHHH-HHHHHHHHhccc
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQALVVAPM------KASTFCCIGYIQALTGDLDSA-VNYFHKTMALKR  315 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p  315 (342)
                      ++|.+|..+|++++|+.+++++++..++      ...++.++|.++..+|++++| ..++++++.+..
T Consensus       201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987532      267899999999999999999 888999987653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.3e-17  Score=118.30  Aligned_cols=118  Identities=10%  Similarity=-0.127  Sum_probs=109.8

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHH
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL  154 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  154 (342)
                      |..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHH
Q psy3701         155 ECGLTNNARLASKFFDLALSIA------HEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~  192 (342)
                      ++...|++++|+..|+++++++      |.+..++..++.+...
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999      8888888888777644

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.76  E-value=9e-17  Score=124.97  Aligned_cols=145  Identities=17%  Similarity=0.093  Sum_probs=99.7

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      ...++.+|.++...|++++|+..|++++  .| ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            3456777888888888888888888775  22 56677778888888888888888888888888888888888888888


Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhc----cCCCChHHHHHHHHHHHHhhhHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI----IADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      ..|++++|+..|+++++..|.+...                        ....    ..+....++.++|.++...|+++
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  138 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLI------------------------DYKILGLQFKLFACEVLYNIAFMYAKKEEWK  138 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEE------------------------ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHH------------------------HHHHhccccCccchHHHHHHHHHHHHccCHH
Confidence            8888888888888888777766100                        0000    01112256666666666666666


Q ss_pred             HHHHHHHHHHhhCCCc
Q psy3701         268 EALEFHKQALVVAPMK  283 (342)
Q Consensus       268 ~A~~~~~~al~~~~~~  283 (342)
                      +|+..|+++++..|++
T Consensus       139 ~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          139 KAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHcCccc
Confidence            6666666666666654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.76  E-value=4.6e-17  Score=121.24  Aligned_cols=137  Identities=12%  Similarity=-0.021  Sum_probs=127.7

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      .+..+..+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHH--HHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMG--VIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      ...|++++|+..+++++..+|.+..++..++  ..+...|++++|+..+.++....+..
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  150 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL  150 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhccc
Confidence            9999999999999999999999998885554  44888999999999999988776554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.76  E-value=6.3e-17  Score=132.37  Aligned_cols=171  Identities=10%  Similarity=-0.059  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH------HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch-----
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLP------AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL-----  147 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----  147 (342)
                      ..+...+..++..|++++|...+++++...+..+.      .+..+|.++...|++++|+..+++++...+....     
T Consensus        76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~  155 (293)
T 3u3w_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence            34455688899999999999999999998776654      3345899999999999999999999997654332     


Q ss_pred             -HHHHHHHHHhhhCCHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccc
Q psy3701         148 -PALYVGLECGLTNNARLASKFFDLALSIA-------HEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIA  219 (342)
Q Consensus       148 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  219 (342)
                       ++..+|.+|...|++++|+.+|+++++..       +....++.++|.++..+|++++|+.++++++++.+...     
T Consensus       156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-----  230 (293)
T 3u3w_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-----  230 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-----
Confidence             57889999999999999999999999532       22345789999999999999999999999999987763     


Q ss_pred             cchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh-hHHHHHHHHHHHHhh
Q psy3701         220 DKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK-KYEEALEFHKQALVV  279 (342)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~  279 (342)
                                               .....+.++.++|.++..+| .+++|+.+|++++.+
T Consensus       231 -------------------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          231 -------------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             -------------------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -------------------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence                                     23334679999999999999 479999999999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.76  E-value=5e-16  Score=144.75  Aligned_cols=256  Identities=12%  Similarity=0.056  Sum_probs=197.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ...+|+.+|.++...|++++|++.|.++                 +++..+..+|.++.+.|++++|+++|..+.+..++
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            3678888999999999999999999874                 67889999999999999999999999999988754


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                       +.+...+|.+|.+.+++++ ++.|.     ...+...+..+|..+...|++++|..+|.++        ..|..+|.++
T Consensus      1167 -~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tL 1231 (1630)
T 1xi4_A         1167 -SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTL 1231 (1630)
T ss_pred             -ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHH
Confidence             3334458999999999885 44442     2334466778999999999999999999986        4688999999


Q ss_pred             HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh---hhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL---GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      .++|++++|++.++++...          ..|.......   +++..... ....   -...++.+..++..|...|.++
T Consensus      1232 vkLge~q~AIEaarKA~n~----------~aWkev~~acve~~Ef~LA~~-cgl~---Iiv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A         1232 VHLGEYQAAVDGARKANST----------RTWKEVCFACVDGKEFRLAQM-CGLH---IVVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred             HHhCCHHHHHHHHHHhCCH----------HHHHHHHHHHhhhhHHHHHHH-HHHh---hhcCHHHHHHHHHHHHHcCCHH
Confidence            9999999999999998332          2233222211   11111111 1111   1122456678999999999999


Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHHHHH--hCChHHHHHHHHHHHhccc-----CchhHHhHHHHHHHHhh
Q psy3701         268 EALEFHKQALVVAPMKASTFCCIGYIQAL--TGDLDSAVNYFHKTMALKR-----DDSFATTMLSYVIEQLI  332 (342)
Q Consensus       268 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~  332 (342)
                      +|+.++++++.++|.+...+..+|.++.+  -++..++.+.|...+.+.|     ++...|..+..++.+..
T Consensus      1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A         1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred             HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999888888764  5678889999999888877     67777777777765543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.75  E-value=1e-16  Score=124.68  Aligned_cols=134  Identities=16%  Similarity=0.229  Sum_probs=120.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ....++.+|..+...|++++|+..|++++              +| ++.+++.+|.++...|++++|+..|++++..+|+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--------------~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~   69 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--------------DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH   69 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--------------SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--------------CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            34456778999999999999999999952              34 6789999999999999999999999999999999


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc----------------hHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH----------------LPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      ++.++..+|.++...|++++|+..|+++++..|.+.                .++..+|.++...|++++|+..++++++
T Consensus        70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888877                7888899999999999999999999999


Q ss_pred             hCCCC
Q psy3701         175 IAHED  179 (342)
Q Consensus       175 ~~~~~  179 (342)
                      ..|++
T Consensus       150 ~~p~~  154 (213)
T 1hh8_A          150 MKSEP  154 (213)
T ss_dssp             TCCSG
T ss_pred             cCccc
Confidence            98876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.75  E-value=4.9e-18  Score=130.64  Aligned_cols=161  Identities=13%  Similarity=-0.005  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-------------
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-------------  146 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------  146 (342)
                      .....+......|+++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++             
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   85 (198)
T 2fbn_A            6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN   85 (198)
T ss_dssp             ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            3344555666677777777777766666666677788888888888888888888888888888776             


Q ss_pred             ---hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh
Q psy3701         147 ---LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE  223 (342)
Q Consensus       147 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  223 (342)
                         .++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|.+          
T Consensus        86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------  155 (198)
T 2fbn_A           86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN----------  155 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----------
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----------
Confidence               7788899999999999999999999999999999999999999999999999999999999998887          


Q ss_pred             hHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHH-HHHHHH
Q psy3701         224 PLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL-EFHKQA  276 (342)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a  276 (342)
                                                ..++..++.++...++..++. ..+.+.
T Consensus       156 --------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          156 --------------------------LDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHHHC---------
T ss_pred             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      578888888888888887776 333333

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.75  E-value=2.5e-17  Score=118.41  Aligned_cols=128  Identities=14%  Similarity=0.031  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      ...+...|..++..|+|++|+..|+++++++|+++...                        .....+....+|.++|.+
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~------------------------a~~~~~~~a~a~~n~g~a   66 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE------------------------AFDHAGFDAFCHAGLAEA   66 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS------------------------CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh------------------------hhhhccchHHHHHHHHHH
Confidence            44578889999999999999999999999999854110                        000001113499999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhh-------CCCchHHH----HHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         260 NRKLKKYEEALEFHKQALVV-------APMKASTF----CCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      +..+|++++|+..|++++++       +|++..+|    +++|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus        67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A           67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            99999999999999999999       99999999    99999999999999999999999999999998777776665


Q ss_pred             HHh
Q psy3701         329 EQL  331 (342)
Q Consensus       329 ~~~  331 (342)
                      +..
T Consensus       147 ~~~  149 (159)
T 2hr2_A          147 EVA  149 (159)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.75  E-value=5e-18  Score=130.57  Aligned_cols=166  Identities=16%  Similarity=0.088  Sum_probs=121.7

Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG  230 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                      ..+......|+++++.+.+.......+.....+..+|..++..|++++|+..|++++...|.++....     ..   ..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----~~---~~   80 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD-----QI---LL   80 (198)
T ss_dssp             -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC-----HH---HH
T ss_pred             chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch-----hh---HH
Confidence            34445555666666666666555555556677888899999999999999999999988877631000     00   00


Q ss_pred             hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         231 HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                      .....            ....++.++|.++...|++++|+..++++++.+|++..+++.+|.++..+|++++|+.+|+++
T Consensus        81 ~~~~~------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A           81 DKKKN------------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             HHHHH------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHH------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            00000            003689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccCchhHHhHHHHHHHHhhhcCC
Q psy3701         311 MALKRDDSFATTMLSYVIEQLIEESP  336 (342)
Q Consensus       311 l~~~p~~~~~~~~l~~~~~~~~~~~~  336 (342)
                      ++++|+++.++..++.++....+...
T Consensus       149 l~~~p~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A          149 ASLNPNNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887765443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.74  E-value=4.9e-17  Score=115.83  Aligned_cols=126  Identities=13%  Similarity=0.060  Sum_probs=120.4

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY  151 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  151 (342)
                      ..+|.++..+..+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChh
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYT  197 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (342)
                      +|.++...|++++|+..+++++...|+++.++..+|.++...|+++
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999998863

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.74  E-value=1.4e-16  Score=130.28  Aligned_cols=172  Identities=10%  Similarity=-0.024  Sum_probs=141.8

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchH------HHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hH
Q psy3701         114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLP------ALYVGLECGLTNNARLASKFFDLALSIAHED------PF  181 (342)
Q Consensus       114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~  181 (342)
                      .+...+..+...|++++|+..+++++...+..+..      +..+|.++...+++++|+..+++++...+..      ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            34455778899999999999999999987765542      2247888888999999999999999865443      23


Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701         182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR  261 (342)
Q Consensus       182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (342)
                      ++..+|.+|...|++++|+.+|+++++.....++                             ..+....+++++|.+|.
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~~nlg~~y~  207 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHD-----------------------------NEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-----------------------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-----------------------------chhHHHHHHHHHHHHHH
Confidence            6899999999999999999999999976544310                             11122568999999999


Q ss_pred             HhhhHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcc
Q psy3701         262 KLKKYEEALEFHKQALVVAPMK------ASTFCCIGYIQALTGD-LDSAVNYFHKTMALK  314 (342)
Q Consensus       262 ~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~  314 (342)
                      .+|++++|+.++++++++.+..      +.++..+|.++..+|+ +++|+.+|++++.+.
T Consensus       208 ~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999876433      6889999999999995 699999999999864

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.74  E-value=6.6e-17  Score=115.62  Aligned_cols=123  Identities=11%  Similarity=-0.013  Sum_probs=118.1

Q ss_pred             cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      ..|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|.+..++..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN  195 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (342)
                      |.++...|++++|+..+++++..+|.+..++..++.++...|+
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999988764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.74  E-value=1.8e-16  Score=127.31  Aligned_cols=224  Identities=15%  Similarity=0.029  Sum_probs=173.3

Q ss_pred             HHHHHHhHHHHhhccHH---------HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701          33 ALLLLKGRVYEALENRA---------LAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK  103 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~---------~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  103 (342)
                      ...+.+.+++..+|++.         +|+..|-+-+...++..+++.+...+.+..++..+|.++...|++++|++++.+
T Consensus        46 ~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~  125 (310)
T 3mv2_B           46 TLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVE  125 (310)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34455667777777663         466666655555577777777777666677788999999999999999999999


Q ss_pred             HhhcCC--CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC------CchHHHHHHHHHhhhC--CHHHHHHHHHHHH
Q psy3701         104 ATSLDK--LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG------CHLPALYVGLECGLTN--NARLASKFFDLAL  173 (342)
Q Consensus       104 a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~  173 (342)
                      .+..+|  .+.+++..++.++..+|+.+.|.+.++++.+.+|+      .......-+++....|  ++++|..+|+++.
T Consensus       126 ~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~  205 (310)
T 3mv2_B          126 GIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS  205 (310)
T ss_dssp             HHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH
T ss_pred             HhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            999987  88999999999999999999999999999999882      2233333455566666  9999999999999


Q ss_pred             hhCCC--ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701         174 SIAHE--DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP  251 (342)
Q Consensus       174 ~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
                      ...|+  .+..+.+   ++..+|++++|...++.+++..|....                          +....|..+.
T Consensus       206 ~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~--------------------------k~~~~p~~~~  256 (310)
T 3mv2_B          206 QTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQ--------------------------KENAVLYKPT  256 (310)
T ss_dssp             TTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTT--------------------------CHHHHSSHHH
T ss_pred             HhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccc--------------------------cccCCCCCHH
Confidence            88886  2333333   899999999999999988887544100                          0000122268


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHH
Q psy3701         252 LLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTF  287 (342)
Q Consensus       252 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  287 (342)
                      ++.+++.+....|+  +|.++++++.+.+|+++.+.
T Consensus       257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          257 FLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence            88899888888997  89999999999999998654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.74  E-value=1.7e-16  Score=117.83  Aligned_cols=138  Identities=15%  Similarity=0.157  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc--ccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE--IIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG  257 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  257 (342)
                      ...+...|..++..|+|++|+..|++++...+.....  .....+                    ....+....++.++|
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~nla   70 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VELDRKNIPLYANMS   70 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999883322000  000000                    000122257999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch-hHHhHHHHHHHHhhhcCC
Q psy3701         258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS-FATTMLSYVIEQLIEESP  336 (342)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~  336 (342)
                      .++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+...+..+.....+...
T Consensus        71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 778888888777665544


Q ss_pred             C
Q psy3701         337 P  337 (342)
Q Consensus       337 ~  337 (342)
                      .
T Consensus       151 ~  151 (162)
T 3rkv_A          151 D  151 (162)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.73  E-value=8.9e-17  Score=119.61  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=75.1

Q ss_pred             CChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701         178 EDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG  257 (342)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  257 (342)
                      .+...+..+|.++...|++++|+..|+++++++|.+                                    ..++.++|
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~l~   52 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------------------------------------PIYLSNRA   52 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------------------------------------HHHHHHHH
Confidence            345566667777777777777777777777776666                                    46677777


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701         258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT  321 (342)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  321 (342)
                      .++...|++++|+..|+++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++
T Consensus        53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  116 (164)
T 3sz7_A           53 AAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA  116 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence            7777777777777777777777777777777777777777777777777777777777766633

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.73  E-value=1.9e-16  Score=117.94  Aligned_cols=130  Identities=12%  Similarity=0.026  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN  227 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  227 (342)
                      .+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|.+              
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--------------   80 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--------------   80 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------------
Confidence            344555556666666666666666666666666666666666666666666666666666666555              


Q ss_pred             HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH--HHHHHhCChHHHHH
Q psy3701         228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG--YIQALTGDLDSAVN  305 (342)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~--~~~~~~g~~~~A~~  305 (342)
                                            ..++..+|.++...|++++|+..++++++.+|++..++..++  ..+...|++++|+.
T Consensus        81 ----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~  138 (166)
T 1a17_A           81 ----------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  138 (166)
T ss_dssp             ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  356666666666666666666666666666666655553333  33555666666666


Q ss_pred             HHHHHHhc
Q psy3701         306 YFHKTMAL  313 (342)
Q Consensus       306 ~~~~al~~  313 (342)
                      .+.++..+
T Consensus       139 ~~~~~~~~  146 (166)
T 1a17_A          139 GDEHKRSV  146 (166)
T ss_dssp             HHHHHHHH
T ss_pred             cccchHHH
Confidence            66655443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.73  E-value=4.9e-17  Score=121.02  Aligned_cols=119  Identities=9%  Similarity=-0.083  Sum_probs=109.8

Q ss_pred             cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      .++.++..++.+|.+++..|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|+++++++|.+..+++.+
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      |.++...|++++|+..|+++++++|++...+...+....
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            999999999999999999999999999887766665433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.73  E-value=5.2e-19  Score=153.43  Aligned_cols=145  Identities=14%  Similarity=0.021  Sum_probs=93.0

Q ss_pred             hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHH
Q psy3701         125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHED---------------PFVIHEMGVI  189 (342)
Q Consensus       125 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~  189 (342)
                      .+++++|+..|++++...|.....+..+|..+...|++++|+..|++++.+.|.+               ..++.++|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555555555555555555               4667777777


Q ss_pred             HHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701         190 AYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA  269 (342)
Q Consensus       190 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  269 (342)
                      +..+|++++|+..++++++++|.+                                    ..+++++|.++..+|++++|
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~a~~~~g~a~~~~g~~~~A  370 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSAN------------------------------------EKGLYRRGEAQLLMNEFESA  370 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCcc------------------------------------HHHHHHHHHHHHHccCHHHH
Confidence            777777777777777777777766                                    46777777777777777777


Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHH
Q psy3701         270 LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVN  305 (342)
Q Consensus       270 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  305 (342)
                      +..|+++++++|++..++..++.++...|++++|..
T Consensus       371 ~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          371 KGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777766653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.73  E-value=3.6e-17  Score=123.38  Aligned_cols=123  Identities=12%  Similarity=0.120  Sum_probs=58.3

Q ss_pred             hCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH-HhhhCCH--HHHHH
Q psy3701          91 IGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE-CGLTNNA--RLASK  167 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~-~~~~~~~--~~A~~  167 (342)
                      .|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++  ++|+.
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~  102 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA  102 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            44445555555555555555555555555555555555555555555555444444444444444 4444444  44444


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         168 FFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      .+++++..+|+++.++..+|.++...|++++|+..++++++.+|.+
T Consensus       103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            4444444444444444444444444444444444444444444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=1.4e-16  Score=112.91  Aligned_cols=66  Identities=8%  Similarity=0.106  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      ++..+|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            344455555555555555555555555555555555555555555555555555555555555544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.72  E-value=5.3e-15  Score=132.77  Aligned_cols=224  Identities=7%  Similarity=0.005  Sum_probs=195.9

Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHH-HHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701          63 LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR-RFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL  141 (342)
Q Consensus        63 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  141 (342)
                      ...+|++++...|..+..|+..+......|+.++|. ..|++++...|.+...|..++......|++++|...|++++..
T Consensus       328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            456788888999999999999999999999999997 9999999999999999999999999999999999999999975


Q ss_pred             C-----------CC-----------CchHHHHHHHHHhhhCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHhcC-hh
Q psy3701         142 F-----------KG-----------CHLPALYVGLECGLTNNARLASKFFDLALSI-AHEDPFVIHEMGVIAYQNHN-YT  197 (342)
Q Consensus       142 ~-----------~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~  197 (342)
                      .           |.           ...+|...+....+.|+.+.|..+|.++++. .+....+|...+.+....++ ++
T Consensus       408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e  487 (679)
T 4e6h_A          408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTK  487 (679)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHH
Confidence            2           42           2346777888888899999999999999987 44567788888887777654 99


Q ss_pred             HHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy3701         198 VAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQAL  277 (342)
Q Consensus       198 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  277 (342)
                      .|..+|+++++..|++                                    ...|...+......|+.+.|...|++++
T Consensus       488 ~Ar~ife~~Lk~~p~~------------------------------------~~~w~~y~~fe~~~~~~~~AR~lferal  531 (679)
T 4e6h_A          488 TACKVLELGLKYFATD------------------------------------GEYINKYLDFLIYVNEESQVKSLFESSI  531 (679)
T ss_dssp             HHHHHHHHHHHHHTTC------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCc------------------------------------hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999999999999988                                    4788888888889999999999999999


Q ss_pred             hhCC---CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701         278 VVAP---MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT  322 (342)
Q Consensus       278 ~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  322 (342)
                      ...|   ....+|......-...|+.+.+....+++.+..|+++....
T Consensus       532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~  579 (679)
T 4e6h_A          532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE  579 (679)
T ss_dssp             TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence            9888   35578888888888999999999999999999999875433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=9.8e-17  Score=113.75  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=92.6

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch-------
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL-------  147 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------  147 (342)
                      ++.+.++..+|..++..|++++|+.+|+++++++|+++.++..+|.++..+|++++|+..++++++++|.+..       
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            3457788999999999999999999999999999999999999999999999999999999999999887643       


Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHH
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVI  183 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  183 (342)
                      ++..+|.++...|++++|++.|++++...|+ +...
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~  119 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV  119 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence            5666777888888888888888888887774 4443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.71  E-value=4.7e-16  Score=111.13  Aligned_cols=123  Identities=11%  Similarity=-0.061  Sum_probs=115.8

Q ss_pred             cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      ..|..+.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|+++.++..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            34667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK  265 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  265 (342)
                      |.++...|++++|+..++++++.+|.+                                    ..++..++.++...|+
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~------------------------------------~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSC------------------------------------KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGG------------------------------------THHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCc------------------------------------hHHHHHHHHHHHHhcC
Confidence            999999999999999999999999988                                    4788899998887764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.71  E-value=5.2e-16  Score=111.65  Aligned_cols=121  Identities=16%  Similarity=0.221  Sum_probs=104.1

Q ss_pred             hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN  254 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (342)
                      ..|.++..+..+|.++...|++++|+..|++++..+|.+                                    ..++.
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------------------------------------~~~~~   47 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------------------------------------AVYYT   47 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------------------------------------HHHHH
Confidence            456788889999999999999999999999999988887                                    57889


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC-----chhHHhHHHHHHH
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD-----DSFATTMLSYVIE  329 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~  329 (342)
                      .+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++++|+     +..+...+..+..
T Consensus        48 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           48 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888     6677777776665


Q ss_pred             Hh
Q psy3701         330 QL  331 (342)
Q Consensus       330 ~~  331 (342)
                      ..
T Consensus       128 ~~  129 (137)
T 3q49_B          128 KR  129 (137)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.71  E-value=1.3e-17  Score=139.72  Aligned_cols=228  Identities=11%  Similarity=0.040  Sum_probs=106.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      +...+...+..+...|++++|+.+++.++            +. ..++.+...++.+|.+.|++.++.++++.     | 
T Consensus        60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ar------------k~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-  120 (449)
T 1b89_A           60 DPSSYMEVVQAANTSGNWEELVKYLQMAR------------KK-ARESYVETELIFALAKTNRLAELEEFING-----P-  120 (449)
T ss_dssp             --------------------------------------------------------------CHHHHTTTTTC-----C-
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHH------------Hh-CccchhHHHHHHHHHHhCCHHHHHHHHcC-----C-
Confidence            44567778889999999999999888864            32 22356666777777777777777766642     3 


Q ss_pred             cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         111 FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       111 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                      +..+|..+|..+...|++++|..+|.++        ..+..++.++.++|++++|++.++++     .++.+|...+.++
T Consensus       121 n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aC  187 (449)
T 1b89_A          121 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC  187 (449)
T ss_dssp             ----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHH
Confidence            2347777777777777777777777766        35666777777777777777777777     3677777777777


Q ss_pred             HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHH
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL  270 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  270 (342)
                      ...|+++.|..+... +...|+.                                       ...++..|.+.|++++|+
T Consensus       188 v~~~ef~lA~~~~l~-L~~~ad~---------------------------------------l~~lv~~Yek~G~~eEai  227 (449)
T 1b89_A          188 VDGKEFRLAQMCGLH-IVVHADE---------------------------------------LEELINYYQDRGYFEELI  227 (449)
T ss_dssp             HHTTCHHHHHHTTTT-TTTCHHH---------------------------------------HHHHHHHHHHTTCHHHHH
T ss_pred             HHcCcHHHHHHHHHH-HHhCHhh---------------------------------------HHHHHHHHHHCCCHHHHH
Confidence            777777777655554 2233333                                       224566667777777777


Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHH--hCChHHHHHHHHHHHhccc-----CchhHHhHHHHHHHH
Q psy3701         271 EFHKQALVVAPMKASTFCCIGYIQAL--TGDLDSAVNYFHKTMALKR-----DDSFATTMLSYVIEQ  330 (342)
Q Consensus       271 ~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~  330 (342)
                      .++++++.+++.+..++..+|.+|.+  .++..+.++.|...+.+.|     ++...|..+..++.+
T Consensus       228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~  294 (449)
T 1b89_A          228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK  294 (449)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777776666666666666653  4556666666666666666     566666666555544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.70  E-value=3.1e-16  Score=111.64  Aligned_cols=79  Identities=19%  Similarity=0.257  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      .++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..++.++.
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444444444444444444444444444333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.70  E-value=2.8e-17  Score=142.59  Aligned_cols=151  Identities=13%  Similarity=-0.006  Sum_probs=134.7

Q ss_pred             HhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---------------chHHHHHHH
Q psy3701          90 LIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---------------HLPALYVGL  154 (342)
Q Consensus        90 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~  154 (342)
                      ..+++++|+..|++++...|.....+..+|.++...|++++|+..|+++++++|.+               ..++..+|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45567888888888888889999999999999999999999999999999999988               588899999


Q ss_pred             HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHH
Q psy3701         155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAE  234 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (342)
                      ++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|.+                     
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---------------------  384 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---------------------  384 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------------
Confidence            99999999999999999999999999999999999999999999999999999999998                     


Q ss_pred             HHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH-HHHH
Q psy3701         235 DKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF-HKQA  276 (342)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~a  276 (342)
                                     ..++..++.++...|++++|... ++++
T Consensus       385 ---------------~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          385 ---------------KAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           47999999999999999988743 3433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.70  E-value=2.7e-16  Score=113.17  Aligned_cols=122  Identities=15%  Similarity=0.080  Sum_probs=103.7

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY  151 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  151 (342)
                      ..+|.++..++.+|.+++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..++++++.+|.++.++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHh
Q psy3701         152 VGLECGLTNNARLASKFFDLALSIAHE-----DPFVIHEMGVIAYQN  193 (342)
Q Consensus       152 l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~  193 (342)
                      +|.++...|++++|+..|++++...|+     +..+...+..+....
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988887     566666666555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.70  E-value=1e-15  Score=107.97  Aligned_cols=121  Identities=23%  Similarity=0.331  Sum_probs=113.2

Q ss_pred             CCCc-HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          74 YPDS-AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        74 ~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      +|.. ..+++.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4544 789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH  194 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (342)
                      |.++...|++++|+..+++++..+|+++.++..+|.++...|
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.70  E-value=2.7e-16  Score=110.43  Aligned_cols=102  Identities=14%  Similarity=0.077  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701         182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR  261 (342)
Q Consensus       182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (342)
                      .++.+|..+...|++++|+..|+++++.+|++                                    ..+|+.+|.++.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------------------------------------~~a~~~lg~~~~   62 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER------------------------------------EEAWRSLGLTQA   62 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------------------------------------HHHHHHHHHHHH
Confidence            46889999999999999999999999999998                                    689999999999


Q ss_pred             HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       262 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      ..|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|++..
T Consensus        63 ~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           63 ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999999999999999999999999999998754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.69  E-value=3.4e-16  Score=120.63  Aligned_cols=162  Identities=17%  Similarity=0.097  Sum_probs=101.5

Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc------CCCCchHHHHHHHHHhhhCCH
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL------FKGCHLPALYVGLECGLTNNA  162 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~  162 (342)
                      +..|++++|.+.++......+....++..+|.++...|++++|+..+++++..      .|....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45677777777444443333355667777777777777777777777777763      233345566677777777777


Q ss_pred             HHHHHHHHHHHhh---CCCC----hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701         163 RLASKFFDLALSI---AHED----PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED  235 (342)
Q Consensus       163 ~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                      ++|+..+++++..   .+++    ..++..+|.++...|++++|+..+++++...+...                     
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------  141 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD---------------------  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc---------------------
Confidence            7777777777665   3322    34567777777778888888888877777655432                     


Q ss_pred             HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701         236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA  280 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  280 (342)
                               .......++..+|.++...|++++|+.++++++++.
T Consensus       142 ---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          142 ---------DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ---------chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence                     000012345667777777777777777777776653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.68  E-value=9.8e-16  Score=118.02  Aligned_cols=181  Identities=13%  Similarity=0.100  Sum_probs=137.7

Q ss_pred             HHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhcC
Q psy3701         122 FAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSI------AHEDPFVIHEMGVIAYQNHN  195 (342)
Q Consensus       122 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~  195 (342)
                      ....|++++|.+.++......+....++..+|.++...|++++|+..+++++..      .|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            356899999999665555533356778889999999999999999999999983      34456789999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCC-CChHHHHHHHHHHHHhhhHHHHHHHHH
Q psy3701         196 YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD-KWEPLLNNLGHVNRKLKKYEEALEFHK  274 (342)
Q Consensus       196 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~  274 (342)
                      +++|+..++++++..+..+                              ..+ ....++.++|.++...|++++|+.+++
T Consensus        82 ~~~A~~~~~~al~~~~~~~------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  131 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLP------------------------------EDPLAASANAYEVATVALHFGDLAGARQEYE  131 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSC------------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcC------------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999855432                              000 124688999999999999999999999


Q ss_pred             HHHhhCCC--c----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         275 QALVVAPM--K----ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       275 ~al~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      +++...+.  +    ..++..+|.++...|++++|+.++++++++....... ...+.++..+..
T Consensus       132 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~  195 (203)
T 3gw4_A          132 KSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS-EAVNELMTRLNG  195 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHhcccc
Confidence            99976422  2    2456899999999999999999999999886544322 233444444433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.68  E-value=2.7e-15  Score=104.63  Aligned_cols=113  Identities=15%  Similarity=0.117  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      +..+..+|.++...|++++|+..+++++...|.+                                    ..++..+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~~a~~   47 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------------------------------------HVLYSNRSAA   47 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------------------------------------HHHHHHHHHH
Confidence            4567778888888888888888888888887776                                    4778888888


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      +...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.+.
T Consensus        48 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           48 YAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            888888888888888888888888888888888888888888888888888888888888877777664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.68  E-value=3.2e-15  Score=105.34  Aligned_cols=115  Identities=24%  Similarity=0.372  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      ...+..+|.++...|++++|+..+++++...|.+                                    ..++..+|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------~~~~~~la~~   52 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------------------------------------AEAWYNLGNA   52 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------------------------------------HHHHHHHHHH
Confidence            4566667777777777777777777777666655                                    3566677777


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      +...|++++|+..++++++..|.++.++..+|.++...|++++|+.+++++++.+|+++.++..++.++..
T Consensus        53 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           53 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            77777777777777777777777777777777777777777777777777777777777777666666543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.68  E-value=2.8e-16  Score=110.31  Aligned_cols=101  Identities=14%  Similarity=-0.046  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT  159 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  159 (342)
                      .++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            35666666666666777777676666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhhCCCCh
Q psy3701         160 NNARLASKFFDLALSIAHEDP  180 (342)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~~~~  180 (342)
                      |++++|+..++++++.+|++.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            666666666666666666543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.68  E-value=3.3e-16  Score=112.58  Aligned_cols=115  Identities=11%  Similarity=0.001  Sum_probs=96.7

Q ss_pred             hhhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cH-----HHHHHHHHHHHHhCC
Q psy3701          26 LQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD-------SA-----IAWYAVGCYYYLIGR   93 (342)
Q Consensus        26 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~-------~~-----~~~~~l~~~~~~~~~   93 (342)
                      ..+...+..+..+|..+...|+|++|+..|+++            +..+|+       +.     .+|.++|.++..+|+
T Consensus         5 ~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kA------------L~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr   72 (159)
T 2hr2_A            5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA------------MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS   72 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC
Confidence            334446677788999999999999999999997            477777       33     389999999999999


Q ss_pred             hHHHHHHHHHHhhc-------CCCcHHHH----HHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          94 SDPARRFLGKATSL-------DKLFLPAW----LMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        94 ~~~A~~~~~~a~~~-------~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      +++|+.+|++++++       +|++..+|    +++|.++..+|++++|+..|+++++++|++......+
T Consensus        73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            99999999999998       99888888    8999999999999999999999998888876554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.68  E-value=2.1e-15  Score=105.22  Aligned_cols=114  Identities=12%  Similarity=0.056  Sum_probs=108.7

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      .+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                      ...|++++|+..++++++.+|+++.++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999998888764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.68  E-value=4.7e-16  Score=115.42  Aligned_cols=122  Identities=11%  Similarity=0.016  Sum_probs=110.2

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhc------------------CCCcHHHHHHhhhHHHhhccHHHHHHHHHH
Q psy3701          76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSL------------------DKLFLPAWLMYGHSFAVENEHDQAMAAYFN  137 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  137 (342)
                      ..+..+..+|..++..|++++|+..|++++..                  +|.+..++.++|.++...|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            35778999999999999999999999999998                  677778999999999999999999999999


Q ss_pred             HhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhcChh
Q psy3701         138 AFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP-FVIHEMGVIAYQNHNYT  197 (342)
Q Consensus       138 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~  197 (342)
                      +++++|.++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....++..
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 66777777766554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=3.4e-15  Score=108.74  Aligned_cols=119  Identities=12%  Similarity=-0.077  Sum_probs=111.7

Q ss_pred             cCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHH
Q psy3701          73 LYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPA  149 (342)
Q Consensus        73 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  149 (342)
                      .+|.+...++.+|..++..|++++|+..|+++++.+|++   ..++..+|.++...|++++|+..++++++.+|.+..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457789999999999999999999999999999999987   88999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         150 LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      +.+|.++...|++++|+..+++++..+|++..++..++.+..
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            999999999999999999999999999999999888877653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.65  E-value=8.4e-17  Score=140.13  Aligned_cols=134  Identities=13%  Similarity=0.047  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN  227 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  227 (342)
                      ++..+|..+...|++++|++.|+++++.+|++..++..+|.++..+|++++|+..++++++++|.+              
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--------------   73 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--------------   73 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--------------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--------------
Confidence            445566666777777777777777777777777777777777777777777777777777777766              


Q ss_pred             HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH--HHHhCChHHHHH
Q psy3701         228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI--QALTGDLDSAVN  305 (342)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~--~~~~g~~~~A~~  305 (342)
                                            ..++.++|.++..+|++++|+..|+++++.+|++..++..++.+  +...|++++|++
T Consensus        74 ----------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~  131 (477)
T 1wao_1           74 ----------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  131 (477)
T ss_dssp             ----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred             ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                                  46777777777777777777777777777777777777777776  667777777777


Q ss_pred             HHH-----------HHHhcccCc
Q psy3701         306 YFH-----------KTMALKRDD  317 (342)
Q Consensus       306 ~~~-----------~al~~~p~~  317 (342)
                      .++           +++++.|+.
T Consensus       132 ~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          132 GDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             ----CCSTTTCCTTSSCCCCTTC
T ss_pred             cccccchhHhhhhhhhccccccc
Confidence            777           666666654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.65  E-value=3.2e-17  Score=142.73  Aligned_cols=139  Identities=11%  Similarity=-0.014  Sum_probs=125.7

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701          76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE  155 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  155 (342)
                      ..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++++|.+..++..+|.+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH--HHHhcChhHHHHHHH-----------HHHHhhhhcC
Q psy3701         156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI--AYQNHNYTVAENCFM-----------EALSKVKQLG  214 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~al~~~~~~~  214 (342)
                      +..+|++++|++.++++++.+|++..++..++.+  +...|++++|+..++           +++.+.|...
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            9999999999999999999999999999999998  889999999999999           7777777664

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=3.9e-15  Score=128.61  Aligned_cols=207  Identities=11%  Similarity=0.024  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH-----------------HHHHHhhhHHHhhccHHHHHHHHHHHhc
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL-----------------PAWLMYGHSFAVENEHDQAMAAYFNAFN  140 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~  140 (342)
                      |.+....|..+...|++++|++.|.++++..|...                 .++..+|.+|...|++++|++.+.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34566678888899999999999999998877642                 3578899999999999999999999988


Q ss_pred             cCCCCch------HHHHHHHHHhhhCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701         141 LFKGCHL------PALYVGLECGLTNNARLASKFFDLALSIAH------EDPFVIHEMGVIAYQNHNYTVAENCFMEALS  208 (342)
Q Consensus       141 ~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  208 (342)
                      ..+....      +...++.++...|++++|+..+++++...+      ....++..+|.++...|+|++|+..+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            7665433      334577888888999999999999887543      2356788999999999999999999999988


Q ss_pred             hhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC---Cc--
Q psy3701         209 KVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP---MK--  283 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~--  283 (342)
                      ......                              ..+....++..+|.+|...|++++|...+++++...+   ..  
T Consensus       164 ~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  213 (434)
T 4b4t_Q          164 EFKKLD------------------------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ  213 (434)
T ss_dssp             HHTTSS------------------------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHhcc------------------------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence            765542                              2333467899999999999999999999999987643   22  


Q ss_pred             --hHHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         284 --ASTFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       284 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                        ...+..+|.++...|++++|..+|.++++..
T Consensus       214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          214 TVAELDLMSGILHCEDKDYKTAFSYFFESFESY  246 (434)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence              3567788999999999999999999998753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=6.9e-15  Score=107.11  Aligned_cols=121  Identities=16%  Similarity=0.115  Sum_probs=99.1

Q ss_pred             hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHH
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLN  254 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (342)
                      ..|.+...+..+|..+...|++++|+..|+++++..|.+.                                 ....++.
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------------------------~~~~~~~   69 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ---------------------------------DQAVLHR   69 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH---------------------------------HHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch---------------------------------HHHHHHH
Confidence            3466777888888888888888888888888888777641                                 0036788


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      .+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+..+.
T Consensus        70 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           70 NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            88888888888999998888888888888888888898888899999999999999888888888887777664

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.63  E-value=3.5e-15  Score=107.04  Aligned_cols=91  Identities=14%  Similarity=0.078  Sum_probs=75.1

Q ss_pred             hhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh----------hHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701         158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY----------TVAENCFMEALSKVKQLGGEIIADKWEPLLN  227 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  227 (342)
                      +.+.+++|++.++++++++|+++.+|+++|.++...+++          ++|+..|+++++++|+.              
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~--------------   79 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--------------   79 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--------------
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--------------
Confidence            456677777777777778888888888788877777665          59999999999999999              


Q ss_pred             HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCch
Q psy3701         228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK-----------KYEEALEFHKQALVVAPMKA  284 (342)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~~~~~  284 (342)
                                            ..+|+++|.+|..+|           ++++|+.+|+++++++|++.
T Consensus        80 ----------------------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           80 ----------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             ----------------------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence                                  689999999999885           78888888888888888764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.63  E-value=1.9e-15  Score=104.38  Aligned_cols=106  Identities=17%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701         176 AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN  255 (342)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (342)
                      +|+++.++..+|.++...|++++|+..++++++..|.+                                    ..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------~~~~~~   45 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------------------------------------SKYWLM   45 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------------------------------------HHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------------------------------------HHHHHH
Confidence            45556666666666666666666666666666666655                                    356666


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHh-CChHHHHHHHHHHHhcccCc
Q psy3701         256 LGHVNRKLKKYEEALEFHKQALVVAPM--KASTFCCIGYIQALT-GDLDSAVNYFHKTMALKRDD  317 (342)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~  317 (342)
                      +|.++...|++++|+..++++++..|.  +..++..+|.++... |++++|++++++++...|++
T Consensus        46 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            677777777777777777777776666  666677777777777 77777777777777766654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.63  E-value=6.1e-15  Score=104.80  Aligned_cols=116  Identities=13%  Similarity=-0.005  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH---HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC---chHHHHH
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL---PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC---HLPALYV  152 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l  152 (342)
                      .+++.+|.+++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++...|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999888   799999999999999999999999999999998   7779999


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q psy3701         153 GLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH  194 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (342)
                      |.++...|++++|+..+++++...|+++.+......+....+
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            999999999999999999999999998887766655544433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.63  E-value=2.5e-16  Score=131.13  Aligned_cols=141  Identities=13%  Similarity=0.017  Sum_probs=95.8

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH-----------------HHHHHhhhHHHhhccHHHHHHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL-----------------PAWLMYGHSFAVENEHDQAMAAYF  136 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~  136 (342)
                      .+..+..+..+|..++..|++++|+..|++++...|.+.                 .++.++|.++...|++++|+..++
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345678899999999999999999999999999999876                 489999999999999999999999


Q ss_pred             HHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         137 NAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA-YQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       137 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      ++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+. ...+..+++...|.+++...|.++
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999884 456778889999999999998874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.63  E-value=4.3e-15  Score=105.64  Aligned_cols=120  Identities=13%  Similarity=0.051  Sum_probs=109.3

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------ch
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------HL  147 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~  147 (342)
                      |..+..++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|.+       ..
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999998876       77


Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN  195 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (342)
                      ++..+|.++...|++++|+..+++++...| ++..+..++.+....++
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999998 68888888877766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.63  E-value=7.9e-15  Score=104.26  Aligned_cols=116  Identities=17%  Similarity=0.200  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      +..+..+|.++...|++++|+..+++++...|.+                                    ..++..+|.+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------------------~~~~~~la~~   47 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------------------------------------MTYITNQAAV   47 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------------------------------------HHHHHHHHHH
Confidence            3445566666666666666666666666665555                                    3556666666


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMK-------ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      +...|++++|+.++++++...|.+       ..++..+|.++...|++++|+.+|+++++..| ++.....++.+...+.
T Consensus        48 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           48 YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            666666666666666666665544       56666777777777777777777777777766 4666666666655544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.63  E-value=1.6e-14  Score=102.55  Aligned_cols=114  Identities=15%  Similarity=0.067  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701         182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR  261 (342)
Q Consensus       182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (342)
                      .++.+|.++...|++++|+..|+++++..|.++                                 ....+++.+|.++.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------------------------~~~~~~~~lg~~~~   50 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV---------------------------------YTPNALYWLGESYY   50 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST---------------------------------THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc---------------------------------ccHHHHHHHHHHHH
Confidence            467899999999999999999999999998873                                 11268999999999


Q ss_pred             HhhhHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         262 KLKKYEEALEFHKQALVVAPMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       262 ~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      ..|++++|+..|+++++..|++   +.+++.+|.++...|++++|+..|+++++..|+++.+......+-
T Consensus        51 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           51 ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            9999999999999999999999   888999999999999999999999999999999998777665544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.63  E-value=2e-15  Score=104.30  Aligned_cols=106  Identities=17%  Similarity=0.106  Sum_probs=64.3

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC--CchHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG--CHLPALY  151 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~  151 (342)
                      +|+++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..++++++..|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            45555556666666666666666666666666666666666666666666666666666666666666665  5555555


Q ss_pred             HHHHHhhh-CCHHHHHHHHHHHHhhCCCC
Q psy3701         152 VGLECGLT-NNARLASKFFDLALSIAHED  179 (342)
Q Consensus       152 l~~~~~~~-~~~~~A~~~~~~~~~~~~~~  179 (342)
                      +|.++... |++++|++.+++++...|.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            66666666 66666666666655555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.62  E-value=3.2e-15  Score=107.18  Aligned_cols=101  Identities=18%  Similarity=0.243  Sum_probs=92.0

Q ss_pred             HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH----
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY----  266 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----  266 (342)
                      .+.+.+++|+..++++++++|.+                                    +.+|+++|.++...+++    
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~------------------------------------aea~~n~G~~l~~l~~~~~g~   56 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLD------------------------------------ADNLTRWGGVLLELSQFHSIS   56 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCC------------------------------------HHHHHHHHHHHHHhcccchhh
Confidence            35678999999999999999999                                    69999999999999875    


Q ss_pred             ------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHhC-----------ChHHHHHHHHHHHhcccCchhHHhHHHHH
Q psy3701         267 ------EEALEFHKQALVVAPMKASTFCCIGYIQALTG-----------DLDSAVNYFHKTMALKRDDSFATTMLSYV  327 (342)
Q Consensus       267 ------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~  327 (342)
                            ++|+..|+++++++|++..+|+++|.+|..+|           ++++|+.+|+++++++|++...+..+..+
T Consensus        57 ~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           57 DAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                  59999999999999999999999999999885           89999999999999999998777766544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.61  E-value=1.1e-15  Score=127.26  Aligned_cols=159  Identities=13%  Similarity=0.027  Sum_probs=93.9

Q ss_pred             CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy3701         108 DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMG  187 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  187 (342)
                      .+.....+..+|..+...|++++|+..|++++...|.+.        .+...+++.++...+.         ..++.++|
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla  237 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIA  237 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHH
Confidence            344566778888888888888888888888888777633        1233444455443332         24789999


Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      .++..+|++++|+..++++++++|.+                                    ..+++++|.++..+|+++
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~a~~~lg~a~~~~g~~~  281 (338)
T 2if4_A          238 ACLIKLKRYDEAIGHCNIVLTEEEKN------------------------------------PKALFRRGKAKAELGQMD  281 (338)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999988                                    589999999999999999


Q ss_pred             HHHHHHHHHHhhCCCchHHHHHHHHH-HHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         268 EALEFHKQALVVAPMKASTFCCIGYI-QALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       268 ~A~~~~~~al~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      +|+..|+++++++|++..++..++.+ ....+..+.+...|.+++...|+++.
T Consensus       282 ~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          282 SARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             HHHHHHHHTTC------------------------------------------
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            99999999999999999999999988 44567788899999999999998764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.60  E-value=1.3e-14  Score=122.06  Aligned_cols=126  Identities=13%  Similarity=0.022  Sum_probs=118.9

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhh----------------cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhc
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATS----------------LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFN  140 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  140 (342)
                      .+..+..+|..++..|++++|+..|+++++                .+|.+..++.++|.++...|++++|+..++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            356789999999999999999999999998                7788889999999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHH
Q psy3701         141 LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENC  202 (342)
Q Consensus       141 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  202 (342)
                      ++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988887653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.60  E-value=3e-15  Score=104.53  Aligned_cols=103  Identities=15%  Similarity=0.143  Sum_probs=86.6

Q ss_pred             HhCChHHHHHHHHHHhhc---CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHH
Q psy3701          90 LIGRSDPARRFLGKATSL---DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLAS  166 (342)
Q Consensus        90 ~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~  166 (342)
                      ..|++++|+.+|+++++.   +|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468899999999999999   68888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701         167 KFFDLALSIAHEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (342)
                      ..+++++...|+++.+......+...
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            99999999999988765444433333

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.59  E-value=1.3e-14  Score=101.33  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=87.6

Q ss_pred             HhcChhHHHHHHHHHHHh---hhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHH
Q psy3701         192 QNHNYTVAENCFMEALSK---VKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEE  268 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  268 (342)
                      ..|++++|+..|+++++.   +|.+                                    ..++..+|.++...|++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~------------------------------------~~~~~~lg~~~~~~~~~~~   45 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDL------------------------------------AECYLGLGSTFRTLGEYRK   45 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHH------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccH------------------------------------HHHHHHHHHHHHHcCCHHH
Confidence            468999999999999999   6777                                    5899999999999999999


Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         269 ALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       269 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|+++.......
T Consensus        46 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           46 AEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998765543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.58  E-value=1.7e-14  Score=106.62  Aligned_cols=139  Identities=21%  Similarity=0.236  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK  221 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  221 (342)
                      ++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+..+++++...+...       
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-------   83 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-------   83 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-------
Confidence            34455555555666666666666655544321      24788899999999999999999999999877652       


Q ss_pred             hhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC------CchHHHHHHHHHHH
Q psy3701         222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP------MKASTFCCIGYIQA  295 (342)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~  295 (342)
                                             ..+....++..+|.++...|++++|+..++++++..+      ....++..+|.++.
T Consensus        84 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  140 (164)
T 3ro3_A           84 -----------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT  140 (164)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -----------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence                                   1111246888999999999999999999999997642      22467889999999


Q ss_pred             HhCChHHHHHHHHHHHhcccC
Q psy3701         296 LTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       296 ~~g~~~~A~~~~~~al~~~p~  316 (342)
                      ..|++++|+.++++++++...
T Consensus       141 ~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          141 ALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTT
T ss_pred             HccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999987654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.58  E-value=1.3e-14  Score=107.25  Aligned_cols=148  Identities=17%  Similarity=0.139  Sum_probs=97.8

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH------HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPAL  150 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  150 (342)
                      ...++..+|.++...|++++|+.+++++++..+...      .++..+|.++...|++++|+..+++++...+.....  
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--   85 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR--   85 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc--
Confidence            355677777777777777777777777776654321      245555555555555555555555555433221000  


Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG  230 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                                                +....++..+|.++...|++++|+..++++++..+...                
T Consensus        86 --------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------  123 (164)
T 3ro3_A           86 --------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK----------------  123 (164)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------
T ss_pred             --------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc----------------
Confidence                                      00145677888999999999999999999888765542                


Q ss_pred             hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701         231 HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM  282 (342)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  282 (342)
                                    ..+....++..+|.++...|++++|+.++++++++...
T Consensus       124 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          124 --------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             --------------chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                          11112467888999999999999999999998876543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.58  E-value=6.4e-14  Score=117.83  Aligned_cols=134  Identities=14%  Similarity=0.171  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      ...+..+|..+...|++++|+..|+++++..+..+...              ...      ......+....++.++|.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~--------------~~~------~~~~~~~~~~~~~~nla~~  282 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA--------------EDA------DGAKLQPVALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS--------------CHH------HHGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcccc--------------ChH------HHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999998554431000              000      0000111225799999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      +..+|++++|+.+++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++....+
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988876654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.55  E-value=2e-13  Score=117.85  Aligned_cols=177  Identities=9%  Similarity=-0.014  Sum_probs=148.2

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch-----------------HHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL-----------------PALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                      |.+....|..+...|++++|++.|.++++..|....                 ++..+|.+|...|++++|.+.+.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445667788899999999999999999999887432                 467799999999999999999999988


Q ss_pred             hCCCCh------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC
Q psy3701         175 IAHEDP------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK  248 (342)
Q Consensus       175 ~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
                      ..+...      .+...+|.++...|++++|+..+++++...+...                              ....
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------~~~~  133 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK------------------------------RVFL  133 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS------------------------------CCSS
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC------------------------------ccHH
Confidence            765533      3456778888889999999999999999887663                              2333


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC------CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVA------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      ...++..+|.++...|+|++|+..+++++...      +....++..+|.+|...|++++|...+++++...+..+
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  209 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY  209 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence            46789999999999999999999999998752      33457899999999999999999999999998765443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.55  E-value=5.8e-13  Score=119.62  Aligned_cols=187  Identities=7%  Similarity=-0.030  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHH-HHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHH
Q psy3701          95 DPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAM-AAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLAL  173 (342)
Q Consensus        95 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  173 (342)
                      +.....|++++...|.++..|+..+......|+.++|. ..|++++...|.+...+...+......|++++|..+|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999997 99999999999988888899999999999999999999999


Q ss_pred             hhC-----------CC-----------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701         174 SIA-----------HE-----------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH  231 (342)
Q Consensus       174 ~~~-----------~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  231 (342)
                      ...           |.           ...+|...+.+..+.|..+.|...|.++++..|...                 
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----------------  468 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----------------  468 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----------------
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----------------
Confidence            752           43           345788999999999999999999999998733332                 


Q ss_pred             hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                                        ..+|...+.+....++ .+.|...|+++++..|+++..|...+......|+.+.|+..|+++
T Consensus       469 ------------------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfera  530 (679)
T 4e6h_A          469 ------------------PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESS  530 (679)
T ss_dssp             ------------------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ------------------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                              3577777777666654 899999999999999999999999999999999999999999999


Q ss_pred             HhcccC
Q psy3701         311 MALKRD  316 (342)
Q Consensus       311 l~~~p~  316 (342)
                      +...|+
T Consensus       531 l~~~~~  536 (679)
T 4e6h_A          531 IDKISD  536 (679)
T ss_dssp             TTTSSS
T ss_pred             HHhcCC
Confidence            999884

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.44  E-value=1.7e-12  Score=90.08  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy3701         197 TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQA  276 (342)
Q Consensus       197 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  276 (342)
                      ++|+..|+++++.+|.+                                    ..+++.+|.++...|++++|+..|+++
T Consensus         2 ~~a~~~~~~al~~~p~~------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~a   45 (115)
T 2kat_A            2 QAITERLEAMLAQGTDN------------------------------------MLLRFTLGKTYAEHEQFDAALPHLRAA   45 (115)
T ss_dssp             CCHHHHHHHHHTTTCCC------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCc------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            46888999999999888                                    589999999999999999999999999


Q ss_pred             HhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc--hhHHhHHHHHHHHhhh
Q psy3701         277 LVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD--SFATTMLSYVIEQLIE  333 (342)
Q Consensus       277 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~  333 (342)
                      ++.+|++..++..+|.++...|++++|+..|++++++.|++  ......+...+..+..
T Consensus        46 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           46 LDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999998854  4555566666665544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.2e-13  Score=95.12  Aligned_cols=92  Identities=9%  Similarity=-0.040  Sum_probs=62.9

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC------chHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------HLPAL  150 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~  150 (342)
                      ++.++..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            356677777777777777777777777777777777777777777777777777777777777777766      44555


Q ss_pred             HHHHHHhhhCCHHHHHHH
Q psy3701         151 YVGLECGLTNNARLASKF  168 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~  168 (342)
                      .+|.++...|+++.|+..
T Consensus        83 ~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHhHhhhHhH
Confidence            555555555555544443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.40  E-value=1.3e-11  Score=85.53  Aligned_cols=84  Identities=10%  Similarity=-0.011  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701         130 QAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK  209 (342)
Q Consensus       130 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  209 (342)
                      +|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhhc
Q psy3701         210 VKQL  213 (342)
Q Consensus       210 ~~~~  213 (342)
                      .|..
T Consensus        83 ~~~~   86 (115)
T 2kat_A           83 AQSR   86 (115)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            7755

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.39  E-value=2.7e-13  Score=93.37  Aligned_cols=82  Identities=13%  Similarity=0.102  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCc------hhHHhHH
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDD------SFATTML  324 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l  324 (342)
                      ..+..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|++      ..++..+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~   84 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL   84 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555555555555555555555555555555555555      4455555


Q ss_pred             HHHHHHhh
Q psy3701         325 SYVIEQLI  332 (342)
Q Consensus       325 ~~~~~~~~  332 (342)
                      +.++...+
T Consensus        85 ~~~~~~~~   92 (111)
T 2l6j_A           85 ELAQGAVG   92 (111)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.38  E-value=1e-09  Score=95.70  Aligned_cols=260  Identities=8%  Similarity=-0.094  Sum_probs=165.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC-hHHHHHHHHHHhhc---CCCcHHHHHHhhhH
Q psy3701          46 ENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR-SDPARRFLGKATSL---DKLFLPAWLMYGHS  121 (342)
Q Consensus        46 ~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~---~~~~~~~~~~la~~  121 (342)
                      |+++.+..+|+++            +...| +.+.|..........++ .+.....|+.++..   +|.+...|......
T Consensus        28 ~~~e~~~~ifera------------l~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f   94 (493)
T 2uy1_A           28 KDYRSLESLFGRC------------LKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE   94 (493)
T ss_dssp             TCHHHHHHHHHHH------------STTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH------------hccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence            6677777777775            46666 66777777766666653 34566677777653   56667777776665


Q ss_pred             HH----hhccHHHHHHHHHHHhccCCCCc-hHH-----------------------------------------------
Q psy3701         122 FA----VENEHDQAMAAYFNAFNLFKGCH-LPA-----------------------------------------------  149 (342)
Q Consensus       122 ~~----~~g~~~~A~~~~~~al~~~~~~~-~~~-----------------------------------------------  149 (342)
                      +.    ..|+.+.+...|++++.. |... ..+                                               
T Consensus        95 ~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~  173 (493)
T 2uy1_A           95 EGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK  173 (493)
T ss_dssp             TSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred             HHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence            43    356777788888888774 3321 110                                               


Q ss_pred             HHHHHHHhhhCC---------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         150 LYVGLECGLTNN---------ARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       150 ~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      .....+-...++         .+.....|++++...|..+.+|...+..+...|+.++|...|++++.. |.+.     .
T Consensus       174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~-----~  247 (493)
T 2uy1_A          174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM-----F  247 (493)
T ss_dssp             HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS-----H
T ss_pred             HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH-----H
Confidence            000111111121         334677999999999999999999999999999999999999999999 8763     1


Q ss_pred             chhhHHH--HhhhhHHHHHHHhchh-------ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701         221 KWEPLLN--NLGHKAEDKVKQLGGE-------IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG  291 (342)
Q Consensus       221 ~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  291 (342)
                      .|.....  .+..........+...       ........+|...+....+.++.+.|...|+++ ...+....+|...+
T Consensus       248 l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A  326 (493)
T 2uy1_A          248 LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCA  326 (493)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHH
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHH
Confidence            2221111  1111111111111000       001112357778888888888899999999999 43333456676667


Q ss_pred             HHHHHhC-ChHHHHHHHHHHHhcccCchhHHhHHHH
Q psy3701         292 YIQALTG-DLDSAVNYFHKTMALKRDDSFATTMLSY  326 (342)
Q Consensus       292 ~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~  326 (342)
                      .+....+ +.+.|...|+.+++..|+.+..+.....
T Consensus       327 ~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid  362 (493)
T 2uy1_A          327 FIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL  362 (493)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            6666666 6999999999999988888765544433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.38  E-value=6.2e-12  Score=83.02  Aligned_cols=82  Identities=27%  Similarity=0.439  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      ...+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             Hh
Q psy3701         330 QL  331 (342)
Q Consensus       330 ~~  331 (342)
                      ..
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.37  E-value=4.7e-12  Score=83.64  Aligned_cols=84  Identities=29%  Similarity=0.398  Sum_probs=59.5

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701          76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE  155 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  155 (342)
                      .++.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777666666666666


Q ss_pred             Hhhh
Q psy3701         156 CGLT  159 (342)
Q Consensus       156 ~~~~  159 (342)
                      +...
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.30  E-value=3.7e-11  Score=80.87  Aligned_cols=87  Identities=13%  Similarity=0.115  Sum_probs=75.5

Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch--hHHhHH
Q psy3701         247 DKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS--FATTML  324 (342)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l  324 (342)
                      |..+.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++.|++.  .....+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l   83 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL   83 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence            445789999999999999999999999999999999999999999999999999999999999999987544  455556


Q ss_pred             HHHHHHhhh
Q psy3701         325 SYVIEQLIE  333 (342)
Q Consensus       325 ~~~~~~~~~  333 (342)
                      ..++.....
T Consensus        84 ~~~l~~~~~   92 (100)
T 3ma5_A           84 QDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHccc
Confidence            666665543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.28  E-value=1e-11  Score=83.50  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH-HHHHHHHHHHHh
Q psy3701         185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP-LLNNLGHVNRKL  263 (342)
Q Consensus       185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~  263 (342)
                      ..|.++...|++++|+..|+++++.+|.+                                    .. ++..+|.++...
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~~lg~~~~~~   48 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVG------------------------------------KDEAYYLMGNAYRKL   48 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSST------------------------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCc------------------------------------HHHHHHHHHHHHHHc
Confidence            45555666666666666666666665555                                    34 566666666666


Q ss_pred             hhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         264 KKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       264 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      |++++|+..|+++++.+|++..++..        +.+.+++..|+++...+|+++
T Consensus        49 ~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           49 GDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            66666666666666666665555432        344555555655555555543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.27  E-value=9.3e-12  Score=83.70  Aligned_cols=89  Identities=12%  Similarity=0.070  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHH-HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701          82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLP-AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN  160 (342)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  160 (342)
                      +..|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            34566666666666666666666666666666 66666666666666666666666666666665554422        3


Q ss_pred             CHHHHHHHHHHHHhhCCC
Q psy3701         161 NARLASKFFDLALSIAHE  178 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~  178 (342)
                      .+.+++..|+++...+|+
T Consensus        76 ~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHHhccCcc
Confidence            444455555544444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.27  E-value=1.5e-10  Score=82.86  Aligned_cols=61  Identities=21%  Similarity=0.205  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH----hCChHHHHHHHHHHHhc
Q psy3701         251 PLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL----TGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       251 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  313 (342)
                      .+++++|.+|..    .+++++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+.
T Consensus        58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            345555555554    45555555555555443  344555555555555    55555555555555554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.26  E-value=7.5e-11  Score=79.34  Aligned_cols=72  Identities=10%  Similarity=0.004  Sum_probs=51.9

Q ss_pred             CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         142 FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       142 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            466666777777777777777777777777777777777777777777777777777777777777776655

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.23  E-value=4.3e-10  Score=80.43  Aligned_cols=120  Identities=13%  Similarity=0.099  Sum_probs=85.8

Q ss_pred             hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hcChhHHH
Q psy3701         125 ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ----NHNYTVAE  200 (342)
Q Consensus       125 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~  200 (342)
                      .+++++|+.+|+++.+..+  +.+.  +|.+|...+..++|+++|+++.+.  .++.+++.+|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            3467777777777777653  3343  777777777777788888877765  577788888888877    77888888


Q ss_pred             HHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHH
Q psy3701         201 NCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQA  276 (342)
Q Consensus       201 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a  276 (342)
                      .+|+++.+.  .+                                    +.+++++|.+|..    .+++++|+.+|+++
T Consensus        82 ~~~~~Aa~~--g~------------------------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  123 (138)
T 1klx_A           82 QYYSKACGL--ND------------------------------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  123 (138)
T ss_dssp             HHHHHHHHT--TC------------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CC------------------------------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            888888765  22                                    4677888888887    77888888888888


Q ss_pred             HhhCCCchHHHHHH
Q psy3701         277 LVVAPMKASTFCCI  290 (342)
Q Consensus       277 l~~~~~~~~~~~~l  290 (342)
                      .+..  ++.+...+
T Consensus       124 a~~g--~~~A~~~l  135 (138)
T 1klx_A          124 CRLG--SEDACGIL  135 (138)
T ss_dssp             HHTT--CHHHHHHC
T ss_pred             HHCC--CHHHHHHH
Confidence            7763  34444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.22  E-value=3.9e-10  Score=92.23  Aligned_cols=142  Identities=10%  Similarity=0.056  Sum_probs=111.4

Q ss_pred             hcCCCcHHHH--HHHHHHHHHhCC---hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccH-------HHHH-HHHH--
Q psy3701          72 DLYPDSAIAW--YAVGCYYYLIGR---SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEH-------DQAM-AAYF--  136 (342)
Q Consensus        72 ~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-------~~A~-~~~~--  136 (342)
                      ...|.++.+|  +..|..+...++   ..+|+.+|+++++++|+++.++..++.++......       ..++ ..++  
T Consensus       188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            3356655444  556777776654   58999999999999999999999888877532211       1111 1222  


Q ss_pred             HHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         137 NAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       137 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      .++..+|.++.++..++..+...|++++|+..+++++.++| +...+..+|.++...|++++|++.|++++.++|..+
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            23456788888888899999999999999999999999997 477888999999999999999999999999999873

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.22  E-value=6.2e-11  Score=102.63  Aligned_cols=134  Identities=10%  Similarity=-0.051  Sum_probs=110.1

Q ss_pred             HHHHhhhCCHHHHHHHHHHHHhh-----CCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhh
Q psy3701         153 GLECGLTNNARLASKFFDLALSI-----AHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP  224 (342)
Q Consensus       153 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  224 (342)
                      +..+..+|++++|+..+++++.+     .|+++   .++.++|.+|..+|+|++|+.++++++.+....-          
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l----------  385 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY----------  385 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS----------
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc----------
Confidence            33466889999999999999975     35554   4688999999999999999999999998764431          


Q ss_pred             HHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCch---HHHHHHHHHHHH
Q psy3701         225 LLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMKA---STFCCIGYIQAL  296 (342)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~---~~~~~l~~~~~~  296 (342)
                                        ....|..+..+.++|.+|..+|++++|+.+|++++++     .|+++   .....++.++..
T Consensus       386 ------------------G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  447 (490)
T 3n71_A          386 ------------------HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME  447 (490)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence                              1123444678999999999999999999999999975     46655   556789999999


Q ss_pred             hCChHHHHHHHHHHHhcc
Q psy3701         297 TGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       297 ~g~~~~A~~~~~~al~~~  314 (342)
                      ++.+++|...|+++.+..
T Consensus       448 ~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          448 LRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999987654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.22  E-value=9.3e-10  Score=86.34  Aligned_cols=106  Identities=9%  Similarity=-0.022  Sum_probs=89.5

Q ss_pred             CCCcHHHHHHhhhHHHh-----------hccHHHHHHHHHHHhccCCC--CchHHHHHHHHHhhh-----CCHHHHHHHH
Q psy3701         108 DKLFLPAWLMYGHSFAV-----------ENEHDQAMAAYFNAFNLFKG--CHLPALYVGLECGLT-----NNARLASKFF  169 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~-----------~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~-----~~~~~A~~~~  169 (342)
                      +|+++++++..|.+...           .+....|...++++++++|+  +..++..+|.+|...     |+.++|.++|
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF  227 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence            45556666666655432           23467899999999999999  666999999999995     9999999999


Q ss_pred             HHHHhhCCCC-hHHHHHHHHHHHH-hcChhHHHHHHHHHHHhhhhc
Q psy3701         170 DLALSIAHED-PFVIHEMGVIAYQ-NHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       170 ~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~  213 (342)
                      +++++++|+. ..+++.+|..+.. .|++++|...+++++...|..
T Consensus       228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999999975 9999999999988 499999999999999998885

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.19  E-value=4.5e-09  Score=91.72  Aligned_cols=204  Identities=14%  Similarity=0.109  Sum_probs=153.9

Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701          63 LFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF  142 (342)
Q Consensus        63 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  142 (342)
                      ...++++++...|..+..|...+......|+.++|...|++++.. |.+...|...+... ..++   ....+.......
T Consensus       198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~---~~~~l~~~~~~~  272 (493)
T 2uy1_A          198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEA---VYGDLKRKYSMG  272 (493)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH---HHHHHHHHTC--
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhH---HHHHHHHHHHhh
Confidence            456778888889999999999999999999999999999999999 98877776555431 1111   111111111101


Q ss_pred             ----------CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc-ChhHHHHHHHHHHHhhh
Q psy3701         143 ----------KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH-NYTVAENCFMEALSKVK  211 (342)
Q Consensus       143 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~  211 (342)
                                +.....|...+....+.++.+.|...|+++ ...+....+|...+.+....+ +.+.|...|+.+++..|
T Consensus       273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence                      111245666677777788899999999999 433345677777777777666 59999999999999888


Q ss_pred             hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701         212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIG  291 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  291 (342)
                      +.                                    +..+...+......|+.+.|...|+++    +.....|....
T Consensus       352 ~~------------------------------------~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~  391 (493)
T 2uy1_A          352 DS------------------------------------TLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMI  391 (493)
T ss_dssp             TC------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHH
T ss_pred             CC------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHH
Confidence            76                                    456777778788899999999999997    45677888888


Q ss_pred             HHHHHhCChHHHHHHHHHHHh
Q psy3701         292 YIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       292 ~~~~~~g~~~~A~~~~~~al~  312 (342)
                      ..-...|+.+.+...+++++.
T Consensus       392 ~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          392 EYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            888888999999999998885

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.18  E-value=1.1e-10  Score=101.11  Aligned_cols=134  Identities=7%  Similarity=-0.045  Sum_probs=102.1

Q ss_pred             hhHHHhhccHHHHHHHHHHHhccC-----CCC---chHHHHHHHHHhhhCCHHHHHHHHHHHHhh-----CCCCh---HH
Q psy3701         119 GHSFAVENEHDQAMAAYFNAFNLF-----KGC---HLPALYVGLECGLTNNARLASKFFDLALSI-----AHEDP---FV  182 (342)
Q Consensus       119 a~~~~~~g~~~~A~~~~~~al~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~  182 (342)
                      +..+..+|++++|+..+++++++.     |++   ..++..+|.+|..+|++++|+.++++++.+     .|+++   ..
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            344567788888888888887652     333   345666888888888888888888888764     35555   45


Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      ++++|.+|..+|++++|+..+++++++....-                            ....|....+...++.++..
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l----------------------------G~~Hp~~~~~~~~l~~~~~e  447 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTH----------------------------GPSHPITKDLEAMRMQTEME  447 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------------------CTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh----------------------------CCCChHHHHHHHHHHHHHHH
Confidence            88999999999999999999999998754431                            01233345677889999999


Q ss_pred             hhhHHHHHHHHHHHHhhC
Q psy3701         263 LKKYEEALEFHKQALVVA  280 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~  280 (342)
                      ++.+++|...|.++.+..
T Consensus       448 ~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          448 LRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999986543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.15  E-value=6.3e-09  Score=85.19  Aligned_cols=148  Identities=9%  Similarity=0.056  Sum_probs=102.5

Q ss_pred             ccCCCCchHHH--HHHHHHhhhC---CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh----hHHHHHHHHHHHhh
Q psy3701         140 NLFKGCHLPAL--YVGLECGLTN---NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY----TVAENCFMEALSKV  210 (342)
Q Consensus       140 ~~~~~~~~~~~--~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~al~~~  210 (342)
                      ...|.+..++-  ..|..+...+   ...+|+.+|+++++++|+.+.++..++.++.....+    ......+.+++...
T Consensus       188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            33455555443  3455555443   357788888888888888888877777766521111    11111111111110


Q ss_pred             hhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHH
Q psy3701         211 KQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCI  290 (342)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  290 (342)
                                                    ......+..+.++..++..+...|++++|+..+++++.++|+ ...+..+
T Consensus       268 ------------------------------~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~ll  316 (372)
T 3ly7_A          268 ------------------------------VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLL  316 (372)
T ss_dssp             ------------------------------HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred             ------------------------------HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence                                          011123344688888999898899999999999999999974 6788899


Q ss_pred             HHHHHHhCChHHHHHHHHHHHhcccCch
Q psy3701         291 GYIQALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       291 ~~~~~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      |.++...|++++|++.|++|+.++|..+
T Consensus       317 G~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          317 GKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            9999999999999999999999999876

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.14  E-value=4.4e-09  Score=82.55  Aligned_cols=110  Identities=8%  Similarity=-0.048  Sum_probs=91.3

Q ss_pred             hhCCCChHHHHHHHHHHHH-----hcC------hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch
Q psy3701         174 SIAHEDPFVIHEMGVIAYQ-----NHN------YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG  242 (342)
Q Consensus       174 ~~~~~~~~~~~~l~~~~~~-----~~~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (342)
                      +.+|+++..++..|.+...     .|.      ..+|...++++++++|+..                            
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~----------------------------  197 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ----------------------------  197 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH----------------------------
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc----------------------------
Confidence            4567777777666655532     132      4789999999999999841                            


Q ss_pred             hccCCCChHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHH-hCChHHHHHHHHHHHhccc
Q psy3701         243 EIIADKWEPLLNNLGHVNRKL-----KKYEEALEFHKQALVVAPMK-ASTFCCIGYIQAL-TGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       243 ~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p  315 (342)
                            ...+|..+|.+|...     |+.++|..+|+++++++|+. ..+++..|..+.. .|++++|..++++++..+|
T Consensus       198 ------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p  271 (301)
T 3u64_A          198 ------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP  271 (301)
T ss_dssp             ------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred             ------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence                  046999999999985     99999999999999999975 9999999999988 5999999999999999988


Q ss_pred             Cc
Q psy3701         316 DD  317 (342)
Q Consensus       316 ~~  317 (342)
                      ..
T Consensus       272 ~~  273 (301)
T 3u64_A          272 ES  273 (301)
T ss_dssp             GG
T ss_pred             CC
Confidence            74

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.11  E-value=1.6e-09  Score=76.84  Aligned_cols=84  Identities=6%  Similarity=0.050  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhC-C-CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701         250 EPLLNNLGHVNRKLK---KYEEALEFHKQALVVA-P-MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML  324 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  324 (342)
                      .++.+++|+++.+.+   +.++++..++..++.+ | +..++++++|..+.++|+|++|+++++++++++|++..+....
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            689999999999987   7889999999999998 7 5689999999999999999999999999999999999999888


Q ss_pred             HHHHHHhhh
Q psy3701         325 SYVIEQLIE  333 (342)
Q Consensus       325 ~~~~~~~~~  333 (342)
                      ..+-....+
T Consensus       112 ~~ie~~~~k  120 (152)
T 1pc2_A          112 RLIDKAMKK  120 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.10  E-value=1.5e-09  Score=71.34  Aligned_cols=74  Identities=12%  Similarity=0.087  Sum_probs=66.5

Q ss_pred             CCCcHHHHHHHHHHHHHhCC---hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCch
Q psy3701          74 YPDSAIAWYAVGCYYYLIGR---SDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHL  147 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  147 (342)
                      +|++++.+..+|.+++..++   .++|...++++++.+|+++.+++.+|..+...|+|++|+..|+++++.+|..+.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            68899999999999987665   799999999999999999999999999999999999999999999999988443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.00  E-value=5.9e-09  Score=68.46  Aligned_cols=73  Identities=14%  Similarity=0.076  Sum_probs=66.7

Q ss_pred             CCChHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchh
Q psy3701         247 DKWEPLLNNLGHVNRKLKK---YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSF  319 (342)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  319 (342)
                      |..+..+..+|.++...++   .++|...++++++.+|+++.+++.+|..+...|++++|+.+++++++.+|.++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            4457899999999976666   799999999999999999999999999999999999999999999999998544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.96  E-value=1.9e-08  Score=71.29  Aligned_cols=98  Identities=18%  Similarity=0.106  Sum_probs=79.1

Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc---ChhHHHHHHHHHHHhh-hhcCccccccchhhHHHHhhhhHHHH
Q psy3701         161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH---NYTVAENCFMEALSKV-KQLGGEIIADKWEPLLNNLGHKAEDK  236 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                      ....+.+.|.+.+..+|.+.++.+.+|.++.+.+   +.++++..++..++.+ |...                      
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~----------------------   70 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ----------------------   70 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH----------------------
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch----------------------
Confidence            4556777777777778888899999999999877   6668999999999887 6332                      


Q ss_pred             HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701         237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI  293 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  293 (342)
                                   .+.++++|..+.+.|+|++|+++++++++++|++..+....-.+
T Consensus        71 -------------rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           71 -------------RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             -------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence                         47889999999999999999999999999999888776554433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.95  E-value=1.7e-08  Score=68.03  Aligned_cols=79  Identities=25%  Similarity=0.214  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVA-------PMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT  322 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  322 (342)
                      +.-++.+|..+...|+|..|+.+|+++++..       +....++..+|.++.++|+++.|+.+++++++++|+++.+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4677899999999999999999999999863       345788999999999999999999999999999999999988


Q ss_pred             HHHHHH
Q psy3701         323 MLSYVI  328 (342)
Q Consensus       323 ~l~~~~  328 (342)
                      ++...-
T Consensus        85 n~~~~~   90 (104)
T 2v5f_A           85 NLKYFE   90 (104)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            887433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.91  E-value=7.9e-09  Score=88.09  Aligned_cols=105  Identities=11%  Similarity=0.086  Sum_probs=84.6

Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE  271 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (342)
                      ..|+|++|+..+++++++....-                            ....+....++.++|.+|..+|+|++|+.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~l----------------------------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~  361 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVF----------------------------EDSNVYMLHMMYQAMGVCLYMQDWEGALK  361 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTB----------------------------CTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCcc----------------------------ChhchHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            46789999999999998754431                            01223346789999999999999999999


Q ss_pred             HHHHHHhh-----CCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhc-----ccCchhHHhHH
Q psy3701         272 FHKQALVV-----APMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMAL-----KRDDSFATTML  324 (342)
Q Consensus       272 ~~~~al~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l  324 (342)
                      ++++++++     .|++   ...+.++|.+|..+|++++|+..|++++++     .|+++.+....
T Consensus       362 ~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~  427 (433)
T 3qww_A          362 YGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK  427 (433)
T ss_dssp             HHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence            99999975     3444   467899999999999999999999999875     58888765543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.86  E-value=5.1e-08  Score=65.70  Aligned_cols=84  Identities=19%  Similarity=0.190  Sum_probs=71.2

Q ss_pred             ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHH
Q psy3701         179 DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGH  258 (342)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  258 (342)
                      ++.-.+.+|..++..|+|..|+.+|+++++..+...                             ........++..+|.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-----------------------------~~~~~~~~i~~~L~~   54 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-----------------------------ISTIDKVSVLDYLSY   54 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----------------------------CCSSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-----------------------------CCcccHHHHHHHHHH
Confidence            455678999999999999999999999998765431                             012233678999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3701         259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIG  291 (342)
Q Consensus       259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  291 (342)
                      ++.++|++++|+.+++++++..|++..+..+++
T Consensus        55 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           55 AVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            999999999999999999999999999888776

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.82  E-value=1.1e-06  Score=76.86  Aligned_cols=127  Identities=5%  Similarity=-0.179  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhc--CCCcHHHHHHhhhHHHhh---------ccHHHHHHHHHHHhccCC-CCchH
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSL--DKLFLPAWLMYGHSFAVE---------NEHDQAMAAYFNAFNLFK-GCHLP  148 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~-~~~~~  148 (342)
                      +..+-..+.+.|+.++|+..|++..+.  .| +...|..+-.++...         +..++|.+.|++.....- .+..+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            444456666777777777777776653  23 344455554444432         234556666555544321 12344


Q ss_pred             HHHHHHHHhhhCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q psy3701         149 ALYVGLECGLTNNARLASKFFDLALSIA-HEDPFVIHEMGVIAYQNHNYTVAENCFMEALS  208 (342)
Q Consensus       149 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  208 (342)
                      +..+...+.+.|++++|.++|++..+.. +-+...+..+-..+.+.|+.++|...|++..+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4445555555555555555555554432 11444555555555555555555555555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.81  E-value=5.4e-08  Score=83.11  Aligned_cols=115  Identities=13%  Similarity=0.053  Sum_probs=88.8

Q ss_pred             HHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHH
Q psy3701         188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYE  267 (342)
Q Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  267 (342)
                      .-+..+|+|++|+..+++++++....-                            ....+....++.++|.+|..+|+|+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~l----------------------------g~~h~~~~~~~~~L~~~y~~~g~~~  346 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERL----------------------------PDINIYQLKVLDCAMDACINLGLLE  346 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCC----------------------------CTTSHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcC----------------------------CccchHHHHHHHHHHHHHHhhccHH
Confidence            345578999999999999998643321                            0112333678999999999999999


Q ss_pred             HHHHHHHHHHhh-----CCCc---hHHHHHHHHHHHHhCChHHHHHHHHHHHhc-----ccCchhHHhH---HHHHHHH
Q psy3701         268 EALEFHKQALVV-----APMK---ASTFCCIGYIQALTGDLDSAVNYFHKTMAL-----KRDDSFATTM---LSYVIEQ  330 (342)
Q Consensus       268 ~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~---l~~~~~~  330 (342)
                      +|+.++++++..     .|++   ...+.++|.+|..+|++++|+.++++++++     .|+++.+...   |+.+...
T Consensus       347 eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            999999999975     3444   467899999999999999999999999875     5788765544   4554443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.78  E-value=3.8e-08  Score=83.88  Aligned_cols=103  Identities=7%  Similarity=-0.001  Sum_probs=83.1

Q ss_pred             hhhCCHHHHHHHHHHHHhh-----CCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701         157 GLTNNARLASKFFDLALSI-----AHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN  228 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      ...|++++|+..+++++.+     .|+++   .++.++|.+|..+|+|++|+.++++++.+....-              
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l--------------  374 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY--------------  374 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--------------
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc--------------
Confidence            3458899999999999974     45665   4578999999999999999999999998754431              


Q ss_pred             hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCchHHH
Q psy3701         229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMKASTF  287 (342)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~  287 (342)
                                    ....|..+..+.++|.+|..+|++++|+.+|++++++     .|+++.+.
T Consensus       375 --------------G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          375 --------------PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             --------------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             --------------CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence                          1123445678999999999999999999999999975     56766543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.74  E-value=4.7e-06  Score=72.79  Aligned_cols=170  Identities=8%  Similarity=-0.070  Sum_probs=128.0

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHHhccCC-CCchHHHHHHHHHhhhC---------CHHHHHHHHHHHHhhC-CCChHH
Q psy3701         114 AWLMYGHSFAVENEHDQAMAAYFNAFNLFK-GCHLPALYVGLECGLTN---------NARLASKFFDLALSIA-HEDPFV  182 (342)
Q Consensus       114 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~~~~~-~~~~~~  182 (342)
                      .+..+-..+.+.|+.++|++.|+++.+..- .+...+..+-.++...+         ..++|.++|++..... +-+...
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            355566788899999999999998887532 23445555555555433         4788999999887643 226778


Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      +..+...+.+.|++++|..+|++..+..-...                                   ...|..+-..|.+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----------------------------------~~tyn~lI~~~~~  152 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-----------------------------------LRSYGPALFGFCR  152 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-----------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-----------------------------------cceehHHHHHHHH
Confidence            88899999999999999999998876532221                                   4688888899999


Q ss_pred             hhhHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHhCChHHHHHHHHHHHh--cccCch
Q psy3701         263 LKKYEEALEFHKQALVVA-PMKASTFCCIGYIQALTGDLDSAVNYFHKTMA--LKRDDS  318 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~  318 (342)
                      .|+.++|.+.|++..+.. ..+..++..+-..+.+.|+.++|.+.+++..+  ..|+..
T Consensus       153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence            999999999999988764 23567788899999999999999999998865  456443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.73  E-value=3.6e-08  Score=84.17  Aligned_cols=114  Identities=7%  Similarity=-0.115  Sum_probs=89.0

Q ss_pred             HHhhhCCHHHHHHHHHHHHhh-----CCCCh---HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHH
Q psy3701         155 ECGLTNNARLASKFFDLALSI-----AHEDP---FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL  226 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  226 (342)
                      -+...|++++|+..+++++.+     .|+++   .++.++|.+|..+|+|++|+.++++++.+....-            
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l------------  363 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF------------  363 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS------------
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc------------
Confidence            356789999999999999975     35554   4688999999999999999999999998754431            


Q ss_pred             HHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCchH---HHHHHHHHHHH
Q psy3701         227 NNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV-----APMKAS---TFCCIGYIQAL  296 (342)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~---~~~~l~~~~~~  296 (342)
                                      ....|..+..++++|.+|..+|++++|+.++++++++     .|+++.   +..+++.+...
T Consensus       364 ----------------g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          364 ----------------PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             ----------------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence                            1123444678999999999999999999999999975     566664   44555555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.62  E-value=6.5e-07  Score=61.05  Aligned_cols=84  Identities=5%  Similarity=0.053  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHhhhHHH---HHHHHHHHHhhC-C-CchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEE---ALEFHKQALVVA-P-MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTML  324 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  324 (342)
                      ..+.+++|+++.+..+...   ++..++..+..+ | ...+.++.+|..+.+.|+|++|+.+++..++..|++..+..+.
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            6899999999988776555   999999998877 5 4668999999999999999999999999999999999998887


Q ss_pred             HHHHHHhhh
Q psy3701         325 SYVIEQLIE  333 (342)
Q Consensus       325 ~~~~~~~~~  333 (342)
                      ..+-.+...
T Consensus       115 ~~i~~~i~k  123 (126)
T 1nzn_A          115 RLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777665543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.58  E-value=3e-06  Score=59.00  Aligned_cols=120  Identities=8%  Similarity=0.050  Sum_probs=98.0

Q ss_pred             hCCCChHHHHHHHHHHHHhcCh------hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCC
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHNY------TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADK  248 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
                      ..|.+++.|..........|+.      ++-++.|++++..-|...    ...|.                        .
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k----~~~wr------------------------r   59 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK----YGQNE------------------------S   59 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG----GTTCH------------------------H
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc----cccHH------------------------H
Confidence            5789999999999999999999      888899999998877652    11221                        1


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhH
Q psy3701         249 WEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTM  323 (342)
Q Consensus       249 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  323 (342)
                      +...|...+.. ...++.++|...|+.+++.+...+.+|...|..-.++|+...|++.+.+++.+.|........
T Consensus        60 YI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~  133 (161)
T 4h7y_A           60 FARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI  133 (161)
T ss_dssp             HHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred             HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence            24577777755 566999999999999999988889999999999999999999999999999999987655443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.48  E-value=4.6e-06  Score=56.86  Aligned_cols=97  Identities=18%  Similarity=0.073  Sum_probs=69.8

Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhH---HHHHHHHHHHhh-hhcCccccccchhhHHHHhhhhHHHH
Q psy3701         161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV---AENCFMEALSKV-KQLGGEIIADKWEPLLNNLGHKAEDK  236 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (342)
                      ....+.+.|.+....++.+..+.+.+|+++.+..+..+   ++.+++..+... |...                      
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~----------------------   73 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ----------------------   73 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH----------------------
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH----------------------
Confidence            34455666666666667777788888888877766655   777887777765 4221                      


Q ss_pred             HHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHH
Q psy3701         237 VKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGY  292 (342)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  292 (342)
                                   -+.++.+|..+.+.|+|++|..+++..++..|++..+......
T Consensus        74 -------------Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           74 -------------RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                         4677888888888888888888888888888888766554433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.34  E-value=1.2e-05  Score=56.01  Aligned_cols=55  Identities=13%  Similarity=0.146  Sum_probs=32.6

Q ss_pred             hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      .++.++|.+.|+.++.....-+.+|...|..-.++|+...|.+.+.+++...|..
T Consensus        73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            3555555555555555544455566666666666666666666666666665554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.25  E-value=2.4e-05  Score=53.43  Aligned_cols=84  Identities=11%  Similarity=0.024  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         250 EPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPM-KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                      +.+.+++|+++.+..   +..+++..++..++.+|. ..+.++.+|..+.++|+|++|+.+.+..++..|++..+.....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            678999999998765   456899999999998884 5689999999999999999999999999999999999988877


Q ss_pred             HHHHHhhh
Q psy3701         326 YVIEQLIE  333 (342)
Q Consensus       326 ~~~~~~~~  333 (342)
                      .+-.+..+
T Consensus       120 ~Ie~ki~k  127 (134)
T 3o48_A          120 MVEDKIQK  127 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77666554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.23  E-value=7.5e-05  Score=51.73  Aligned_cols=87  Identities=10%  Similarity=0.008  Sum_probs=74.7

Q ss_pred             CCChHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701         247 DKWEPLLNNLGHVNRKLK---KYEEALEFHKQALVVAPM-KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT  322 (342)
Q Consensus       247 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  322 (342)
                      .....+.+++|+++.+..   +..+++..++..+...|. ..+.++.+|..+.++|+|.+|+.+.+..++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            344689999999998765   456899999999998884 5688999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhhh
Q psy3701         323 MLSYVIEQLIE  333 (342)
Q Consensus       323 ~l~~~~~~~~~  333 (342)
                      +...+-.+...
T Consensus       116 Lk~~Ie~~i~k  126 (144)
T 1y8m_A          116 LKSMVEDKIQK  126 (144)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            87777666543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.07  E-value=2.4e-05  Score=55.80  Aligned_cols=133  Identities=11%  Similarity=-0.108  Sum_probs=77.3

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701          36 LLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPD------SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK  109 (342)
Q Consensus        36 ~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  109 (342)
                      +...+.....|.|+.|+-.....+         .+.+.+|+      ...++..+|..++..++|.+|...|+++++...
T Consensus        24 ~dqik~L~d~~LY~sA~~La~lLl---------Sl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k   94 (167)
T 3ffl_A           24 IDHVRDMAAAGLHSNVRLLSSLLL---------TLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK   94 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH---------HHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHH---------HhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            344555666677777776666532         11223443      245889999999999999999999999976532


Q ss_pred             ---CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         110 ---LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       110 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                         +.......++.    .....       ..... +.+.+..+.++.|+...+++++|+..++.+-. ....+.+...+
T Consensus        95 ~l~k~~s~~~~~~~----~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~L  161 (167)
T 3ffl_A           95 ALSKTSKVRPSTGN----SASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLL  161 (167)
T ss_dssp             CC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHH
T ss_pred             HHhcCCCccccccc----cCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHH
Confidence               22221111110    00000       01111 23446677788888888888888888766422 23466777777


Q ss_pred             HHHH
Q psy3701         187 GVIA  190 (342)
Q Consensus       187 ~~~~  190 (342)
                      |.+|
T Consensus       162 akLy  165 (167)
T 3ffl_A          162 ANLY  165 (167)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            7765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.06  E-value=0.00013  Score=52.10  Aligned_cols=120  Identities=8%  Similarity=-0.103  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701         181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN  260 (342)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  260 (342)
                      .++..-...+...|.|+.|+-....++.....+++...                           +.....++..+|.++
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s---------------------------p~~~~~~l~~ladal   73 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS---------------------------PPQKYQLLVYHADSL   73 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC---------------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc---------------------------HHHHHHHHHHHHHHH
Confidence            34566677788899999999999998887655531000                           001145888999999


Q ss_pred             HHhhhHHHHHHHHHHHHhhC------C-------------------CchHHHHHHHHHHHHhCChHHHHHHHHHHHhccc
Q psy3701         261 RKLKKYEEALEFHKQALVVA------P-------------------MKASTFCCIGYIQALTGDLDSAVNYFHKTMALKR  315 (342)
Q Consensus       261 ~~~g~~~~A~~~~~~al~~~------~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  315 (342)
                      +..|+|..|...|+++++..      +                   .+.++.+.++.|+...|++++|+..++.+-.. -
T Consensus        74 f~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~  152 (167)
T 3ffl_A           74 FHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-Q  152 (167)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-G
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-h
Confidence            99999999999999987542      1                   11267899999999999999999998764322 2


Q ss_pred             CchhHHhHHHHHH
Q psy3701         316 DDSFATTMLSYVI  328 (342)
Q Consensus       316 ~~~~~~~~l~~~~  328 (342)
                      ..+.+...|++++
T Consensus       153 Rt~kvnm~LakLy  165 (167)
T 3ffl_A          153 RTPKINMLLANLY  165 (167)
T ss_dssp             CCHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHh
Confidence            3456667777664

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.82  E-value=0.0013  Score=45.65  Aligned_cols=82  Identities=7%  Similarity=-0.040  Sum_probs=63.2

Q ss_pred             CCChHHHHHHHHHHHHhcCh---hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHH
Q psy3701         177 HEDPFVIHEMGVIAYQNHNY---TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLL  253 (342)
Q Consensus       177 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (342)
                      .-.+.+.+++|+++.+..+.   .+++.+++..+...|...                                   -+.+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~-----------------------------------RdcL   80 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-----------------------------------RECL   80 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH-----------------------------------HHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch-----------------------------------hHHH
Confidence            44677888888888887654   468888888888666442                                   4788


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701         254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI  293 (342)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  293 (342)
                      +.+|..+.++|+|++|..+.+..++..|++..+......+
T Consensus        81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            8899999999999999999999999999887765544333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.79  E-value=0.00088  Score=45.83  Aligned_cols=80  Identities=8%  Similarity=-0.039  Sum_probs=63.0

Q ss_pred             ChHHHHHHHHHHHHhcCh---hHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701         179 DPFVIHEMGVIAYQNHNY---TVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN  255 (342)
Q Consensus       179 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (342)
                      .+.+.+++|+++.+..+.   .+++..++..++..|...                                   -+.++.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~-----------------------------------Rd~LYy   83 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-----------------------------------RECLYY   83 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-----------------------------------HHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh-----------------------------------HHHHHH
Confidence            567788888888877654   468888888888777442                                   478888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q psy3701         256 LGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYI  293 (342)
Q Consensus       256 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  293 (342)
                      +|..+.++|+|++|..+.+..++..|++..+......+
T Consensus        84 LAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           84 LTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999988766544443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.68  E-value=0.0028  Score=52.98  Aligned_cols=179  Identities=13%  Similarity=0.071  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      ..+...+|..|...|+.++-.+++......-+..+.+               ++.+..+..+...+..+           
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---------------k~~k~v~~l~~~~~~~~-----------   72 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---------------KAAKLVRSLVDMFLDMD-----------   72 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---------------HHHHHHHHHHHHHTTSC-----------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---------------HHHHHHHHHHHHHhcCC-----------
Confidence            3566777777777777777777776654433332222               12222333332222111           


Q ss_pred             hhCCHHHHHHHHHHHHhhCCCChHH------HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhh
Q psy3701         158 LTNNARLASKFFDLALSIAHEDPFV------IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGH  231 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  231 (342)
                        +..+.-++.+..+++........      -..+|.+|+..|+|.+|...+.+..+......                 
T Consensus        73 --~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-----------------  133 (394)
T 3txn_A           73 --AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD-----------------  133 (394)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-----------------
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-----------------
Confidence              12233334444444332222122      23789999999999999999999887654421                 


Q ss_pred             hHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC---CCch----HHHHHHHHHHH-HhCChHHH
Q psy3701         232 KAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA---PMKA----STFCCIGYIQA-LTGDLDSA  303 (342)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~~~~----~~~~~l~~~~~-~~g~~~~A  303 (342)
                                   ......+++.....+|...|++.++...+.++....   +.++    .....-|..+. ..++|..|
T Consensus       134 -------------d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A  200 (394)
T 3txn_A          134 -------------DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTA  200 (394)
T ss_dssp             -------------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             -------------cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHH
Confidence                         011124677778889999999999999999987643   1222    34566788888 89999999


Q ss_pred             HHHHHHHHhcc
Q psy3701         304 VNYFHKTMALK  314 (342)
Q Consensus       304 ~~~~~~al~~~  314 (342)
                      ..+|-++.+-.
T Consensus       201 ~~~F~eaf~~f  211 (394)
T 3txn_A          201 FSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            99999887543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.40  E-value=0.044  Score=45.80  Aligned_cols=168  Identities=17%  Similarity=0.068  Sum_probs=109.1

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALL-------ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGK  103 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  103 (342)
                      .....+.+|..|...|+.++-.+++.....       .++.++.+.++..-+..             -+..+.-++.+..
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~-------------~~~~~~~~~~~~~   84 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDM-------------DAGTGIEVQLCKD   84 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTS-------------CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcC-------------CCcHHHHHHHHHH
Confidence            345667899999999999999998887641       33334343333322111             1122222333344


Q ss_pred             HhhcCCCcHH------HHHHhhhHHHhhccHHHHHHHHHHHhccCCC--C----chHHHHHHHHHhhhCCHHHHHHHHHH
Q psy3701         104 ATSLDKLFLP------AWLMYGHSFAVENEHDQAMAAYFNAFNLFKG--C----HLPALYVGLECGLTNNARLASKFFDL  171 (342)
Q Consensus       104 a~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~  171 (342)
                      +++...+.-.      .-..+|..|...|+|.+|.+.+.+..+....  +    .+.+..-..+|...+++.++...+.+
T Consensus        85 ~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~  164 (394)
T 3txn_A           85 CIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS  164 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4433222211      2347899999999999999998888764322  1    13344456778899999999999998


Q ss_pred             HHhhC---CCChH----HHHHHHHHHH-HhcChhHHHHHHHHHHHhhh
Q psy3701         172 ALSIA---HEDPF----VIHEMGVIAY-QNHNYTVAENCFMEALSKVK  211 (342)
Q Consensus       172 ~~~~~---~~~~~----~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~  211 (342)
                      +....   +.+|.    +...-|..+. ..++|.+|...|-++++...
T Consensus       165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            87543   23343    3455678888 89999999999999875543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.012  Score=53.55  Aligned_cols=134  Identities=10%  Similarity=0.052  Sum_probs=84.9

Q ss_pred             hhCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHH--Hh-cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701         158 LTNN-ARLASKFFDLALSIAHEDPFVIHEMGVIAY--QN-HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA  233 (342)
Q Consensus       158 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
                      ..++ ++.|+..+++....+|.... ....+.+..  .. .+--+|+..+.+.++............. ...    ..  
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~-~~~----~~--  331 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD-ADS----AR--  331 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC-HHH----HH--
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc-ccc----cc--
Confidence            3455 57799999998888885543 222222222  11 2334577777777643211000000000 000    00  


Q ss_pred             HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                                 ..+.....+..-+..+...|+++-|+...++++...|.....|+.|+.+|..+|+++.|+-.+.-+
T Consensus       332 -----------~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          332 -----------LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             -----------ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                       000002355556777888999999999999999999999999999999999999999999877665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0037  Score=56.73  Aligned_cols=112  Identities=11%  Similarity=-0.025  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhccCCCCchHHHHHHHH---HhhhCCHHHHHHHHHHHHhh--------CCCC----------hHHHHHH
Q psy3701         128 HDQAMAAYFNAFNLFKGCHLPALYVGLE---CGLTNNARLASKFFDLALSI--------AHED----------PFVIHEM  186 (342)
Q Consensus       128 ~~~A~~~~~~al~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~--------~~~~----------~~~~~~l  186 (342)
                      ++.|+..+++....+|.... .+..+.+   .....+--+|++.+.+.++.        .+.+          ...+...
T Consensus       265 ~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            46677777777666665322 1111111   11122334555555555431        1222          2244555


Q ss_pred             HHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhH
Q psy3701         187 GVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKY  266 (342)
Q Consensus       187 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  266 (342)
                      +..+...|+++-|+.+.++++...|..                                    ...|..|+.+|..+|+|
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPse------------------------------------F~tW~~La~vYi~l~d~  387 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDS------------------------------------FESWYNLARCHIKKEEY  387 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSC------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchh------------------------------------hHHHHHHHHHHHHhccH
Confidence            666677788888888888888877777                                    57788888888888888


Q ss_pred             HHHHHHHHHH
Q psy3701         267 EEALEFHKQA  276 (342)
Q Consensus       267 ~~A~~~~~~a  276 (342)
                      +.|+-.+..+
T Consensus       388 e~ALLtLNSc  397 (754)
T 4gns_B          388 EKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhcC
Confidence            8887666554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.052  Score=39.50  Aligned_cols=109  Identities=14%  Similarity=0.063  Sum_probs=69.3

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      +++.-+.++   ...|+++.|.+..+..     ++...|..+|......|+++-|..+|+++-.        +-.+..+|
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly   70 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY   70 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence            344445444   4678888888877654     4577788888888888888888888887632        22344556


Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA  206 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  206 (342)
                      ...|+.+.-.+.-+.+.....     +.....+++.+|+++++++.|.+.
T Consensus        71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            666666655544444433221     223344566778888888777553

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.97  E-value=0.011  Score=51.21  Aligned_cols=84  Identities=19%  Similarity=0.308  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         251 PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       251 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ..+..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|.-+|.+++......+.+..+|..++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            46777899988888999999999999999999999999999999999999999999999999888899999999999987


Q ss_pred             hhhc
Q psy3701         331 LIEE  334 (342)
Q Consensus       331 ~~~~  334 (342)
                      ..+.
T Consensus       233 ~~~~  236 (497)
T 1ya0_A          233 ALES  236 (497)
T ss_dssp             HTTS
T ss_pred             HHhh
Confidence            6543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.065  Score=38.98  Aligned_cols=19  Identities=5%  Similarity=-0.221  Sum_probs=12.7

Q ss_pred             HHHHHHhhhHHHHHHHHHH
Q psy3701         257 GHVNRKLKKYEEALEFHKQ  275 (342)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~  275 (342)
                      ..++..+|+++++++.|.+
T Consensus        96 f~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           96 LLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            3445667777777777755

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.91  E-value=0.12  Score=48.05  Aligned_cols=75  Identities=11%  Similarity=-0.130  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCC
Q psy3701          82 YAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNN  161 (342)
Q Consensus        82 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  161 (342)
                      ..+...+...|.+++|+...+        ++...   -......|++++|.+..+.     .++...|..+|..+...++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~  696 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN  696 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence            444455556666666654432        11111   1233456666666665422     1334566666666666666


Q ss_pred             HHHHHHHHHHH
Q psy3701         162 ARLASKFFDLA  172 (342)
Q Consensus       162 ~~~A~~~~~~~  172 (342)
                      ++.|+++|.++
T Consensus       697 ~~~A~~~y~~~  707 (814)
T 3mkq_A          697 FKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            66666666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.89  E-value=0.061  Score=49.93  Aligned_cols=166  Identities=12%  Similarity=-0.033  Sum_probs=100.8

Q ss_pred             HHHHhCChHHHHH-HHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHH
Q psy3701          87 YYYLIGRSDPARR-FLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLA  165 (342)
Q Consensus        87 ~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  165 (342)
                      .....+++++|.+ .+..    -|+ ......+...+...|.+++|+...+        ++..   ........|++++|
T Consensus       608 ~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~---~f~~~l~~~~~~~A  671 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQ---KFELALKVGQLTLA  671 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHH---HHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccch---heehhhhcCCHHHH
Confidence            3346788888876 4311    110 1122556677778888888887542        1222   23345778999999


Q ss_pred             HHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhcc
Q psy3701         166 SKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEII  245 (342)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
                      .+..+.     .+++..|..+|..+...++++.|+.+|.++-....-.          .++..                 
T Consensus       672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~----------~l~~~-----------------  719 (814)
T 3mkq_A          672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLF----------LLHSS-----------------  719 (814)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHH----------HHHHH-----------------
T ss_pred             HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhH----------HHHHH-----------------
Confidence            987643     3678999999999999999999999999863322110          00000                 


Q ss_pred             CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701         246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHK  309 (342)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  309 (342)
                       ......+..++......|++..|...|.+.     .+   ......+|.+.+++++|...-++
T Consensus       720 -~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          720 -FNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGST  774 (814)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHHHHHH
Confidence             011234455666666677777766665442     11   12234456677777777765443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.84  E-value=0.072  Score=38.09  Aligned_cols=206  Identities=12%  Similarity=-0.001  Sum_probs=98.3

Q ss_pred             CCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC-CchHHHHHH
Q psy3701          75 PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG-CHLPALYVG  153 (342)
Q Consensus        75 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~  153 (342)
                      |..++.-..++..++-.|.+..++..+.+.     +...+.+.-+.|+....++..|+..+++.++-.-+ ++.+-..+ 
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~-  103 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI-  103 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH-
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc-
Confidence            333444455566666666666666554331     23444555556666666666666666666632111 01000000 


Q ss_pred             HHHhhhCCHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH-hhh
Q psy3701         154 LECGLTNNARLASKFFDLALSIAHEDPF-VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN-LGH  231 (342)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~  231 (342)
                                       +..-.+|.+.+ .+..+|.++...|+-++|+.++.......|--+.     .-..++.+ ...
T Consensus       104 -----------------~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~-----vEnliyeN~vp~  161 (242)
T 3kae_A          104 -----------------QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP-----VENLLLENKVPQ  161 (242)
T ss_dssp             -----------------HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH-----HHHHHHTTCCCC
T ss_pred             -----------------ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch-----HHHHHhhcCCCc
Confidence                             01113455544 3567788888999999999999888877664420     00000000 000


Q ss_pred             -hHHHHHHHhchhccCCCCh-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHH-HHHHHHHHHHhCChHHHHHHHH
Q psy3701         232 -KAEDKVKQLGGEIIADKWE-PLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAST-FCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       232 -~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                       ...+-....    ...... ..+......+.....     ...++-...-|.-... ....+..+..+|-.++...+|.
T Consensus       162 ~~d~~~i~~~----~~~~i~~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~  232 (242)
T 3kae_A          162 KRDKENVRQT----GRRGIEEEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFE  232 (242)
T ss_dssp             CC---------------CHHHHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchHHHHhh----hhccchhhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHH
Confidence             000000000    000000 000001111111110     2333444445654432 3456778889999999999999


Q ss_pred             HHHhcccCc
Q psy3701         309 KTMALKRDD  317 (342)
Q Consensus       309 ~al~~~p~~  317 (342)
                      ...+.+|..
T Consensus       233 ~lR~kDP~F  241 (242)
T 3kae_A          233 LVRRKDPMF  241 (242)
T ss_dssp             HHHHHSTTT
T ss_pred             HHHhcCCCc
Confidence            999988853

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.68  E-value=0.32  Score=43.44  Aligned_cols=238  Identities=10%  Similarity=-0.047  Sum_probs=121.8

Q ss_pred             HHhcCCCcHHHHHHHHHHHH---HhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc
Q psy3701          70 LVDLYPDSAIAWYAVGCYYY---LIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH  146 (342)
Q Consensus        70 ~~~~~p~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  146 (342)
                      .+..+|+.+..-........   +.+++..-+.++..    .|.+..............|+..+|....+++.......+
T Consensus        61 Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p  136 (618)
T 1qsa_A           61 FVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP  136 (618)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC
T ss_pred             HHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc
Confidence            34557777665444443333   34566655554433    377777777777788888888777777777665544333


Q ss_pred             hHHHHH------------------HHHHhhhCCHHHHHHHHHHH-------------HhhCCCChHH-------------
Q psy3701         147 LPALYV------------------GLECGLTNNARLASKFFDLA-------------LSIAHEDPFV-------------  182 (342)
Q Consensus       147 ~~~~~l------------------~~~~~~~~~~~~A~~~~~~~-------------~~~~~~~~~~-------------  182 (342)
                      .....+                  .......|+...|......+             +..+|.+...             
T Consensus       137 ~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~  216 (618)
T 1qsa_A          137 NACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQ  216 (618)
T ss_dssp             THHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHH
Confidence            332222                  22233334444443332221             1122322111             


Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH-hhhh-HHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN-LGHK-AEDKVKQLGGEIIADKWEPLLNNLGHVN  260 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~  260 (342)
                      ....+.......+.+.|...+.+.....+-+.. .....+..+... .... ..+....+................+...
T Consensus       217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A  295 (618)
T 1qsa_A          217 MAAVAFASVARQDAENARLMIPSLAQAQQLNED-QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA  295 (618)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHH-HHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH
Confidence            122233334445667777777665442221110 000000000000 0001 1111111111111111112222333344


Q ss_pred             HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       261 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      .+.|+++.|..+|++.-...+......+.+|.++...|+.++|..+|+++..
T Consensus       296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            5679999999999876543344567789999999999999999999999976

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.65  E-value=0.034  Score=43.30  Aligned_cols=123  Identities=9%  Similarity=-0.047  Sum_probs=82.2

Q ss_pred             HHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHH
Q psy3701          87 YYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLAS  166 (342)
Q Consensus        87 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~  166 (342)
                      ..++.|+.++|+......++.+|.+......+...++-.|+++.|.+-++.+.+++|.......    .|..   .-.|+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~----~yr~---lI~aE   78 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS----QLRH---LVKAA   78 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH----HHHH---HHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH----HHHH---HHHHH
Confidence            3456788889999999999999999988888889999999999999999999888887432211    1110   00111


Q ss_pred             HHHHHHHhh-----CCCChHHH---HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcc
Q psy3701         167 KFFDLALSI-----AHEDPFVI---HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE  216 (342)
Q Consensus       167 ~~~~~~~~~-----~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  216 (342)
                      ..=.+.+.-     .+..+..|   ..-+......|+.++|...-.++++..|..++.
T Consensus        79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~  136 (273)
T 1zbp_A           79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  136 (273)
T ss_dssp             HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence            111111110     12223223   334555667899999999999999998877643

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.61  E-value=0.11  Score=37.15  Aligned_cols=70  Identities=11%  Similarity=0.036  Sum_probs=45.3

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh--c--CCC-------------cHH-HHHHhhhHHHhhccHHHHHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS--L--DKL-------------FLP-AWLMYGHSFAVENEHDQAMAAY  135 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~--~~~-------------~~~-~~~~la~~~~~~g~~~~A~~~~  135 (342)
                      .-+...+.+..+.||....++..|+..+++.++  .  +|+             +.+ .+..+|.+....|+.++|+..+
T Consensus        58 ~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~  137 (242)
T 3kae_A           58 KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY  137 (242)
T ss_dssp             TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence            345677888889999999999999999999983  2  332             111 2334455555555555555555


Q ss_pred             HHHhccCC
Q psy3701         136 FNAFNLFK  143 (342)
Q Consensus       136 ~~al~~~~  143 (342)
                      .......|
T Consensus       138 ~~Sf~~~~  145 (242)
T 3kae_A          138 VRSFGKSF  145 (242)
T ss_dssp             HHHHHHCC
T ss_pred             hhhcCCcc
Confidence            55554444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.58  E-value=0.093  Score=44.07  Aligned_cols=107  Identities=8%  Similarity=0.028  Sum_probs=75.2

Q ss_pred             HHhcChhHHHHHHHHHHHhhhhcC-ccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHH
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQLG-GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEA  269 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  269 (342)
                      ...|+.+.|...+++++.+..... .......|.....  ....+..             ..+...++..+...|++.+|
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r--~~l~~~~-------------~~a~~~~~~~~l~~g~~~~a  190 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFA--TALVEDK-------------VLAHTAKAEAEIACGRASAV  190 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHH--HHHHHHH-------------HHHHHHHHHHHHHTTCHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH--HHHHHHH-------------HHHHHHHHHHHHHCCCHHHH
Confidence            345677778888888877764432 0000112221110  0000000             24566678888999999999


Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         270 LEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       270 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      +..+.+++..+|-+...+..+..++...|+..+|+..|+++.+
T Consensus       191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988744

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.55  E-value=0.42  Score=46.38  Aligned_cols=118  Identities=13%  Similarity=-0.021  Sum_probs=82.0

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC-------------------
Q psy3701          84 VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG-------------------  144 (342)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------  144 (342)
                      +...+...+.++-+..    .+...|.++...+.+|.++...|++++|..+|+++-.-...                   
T Consensus       818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence            4445556666665544    23345666777788999999999999999999887432100                   


Q ss_pred             ----CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCC-h----HHHHHHHHHHHHhcChhHHHHHHHH
Q psy3701         145 ----CHLPALYVGLECGLTNNARLASKFFDLALSIAHED-P----FVIHEMGVIAYQNHNYTVAENCFME  205 (342)
Q Consensus       145 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~  205 (342)
                          .+..+..+..++.+.+.++.+++..+.+++..+.+ .    ..|..+-..+...|+|++|...+..
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence                11234456677888899999999999998866433 2    2566777778889999999877643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.54  E-value=0.19  Score=39.23  Aligned_cols=59  Identities=8%  Similarity=0.092  Sum_probs=48.5

Q ss_pred             HHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       155 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      ...+.|+.++|+......++.+|.+......+..++.-.|+|+.|.+-++.+.+++|..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            35667788888888888888888888888888888888888888888888888888876

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.54  E-value=0.19  Score=47.19  Aligned_cols=61  Identities=10%  Similarity=-0.057  Sum_probs=35.5

Q ss_pred             HHHHHHHHhhhCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701         149 ALYVGLECGLTNNARLASKFFDLALSI----AHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK  209 (342)
Q Consensus       149 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  209 (342)
                      +..+-..+.+.|+.++|...|.+..+.    ..-+...|+.+-..+.+.|+.++|.+.|++..+.
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~  194 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA  194 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            444555566666666666666543321    1225666666666666666666666666666543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.36  Score=41.32  Aligned_cols=191  Identities=9%  Similarity=-0.038  Sum_probs=120.7

Q ss_pred             hCChHHHHHHHHHHhh---c---CCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH---Hh-hhC
Q psy3701          91 IGRSDPARRFLGKATS---L---DKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE---CG-LTN  160 (342)
Q Consensus        91 ~~~~~~A~~~~~~a~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~---~~-~~~  160 (342)
                      .|+++.|++.+...-+   .   .+....+...+..++...|+++...+.+.-..........+...+...   +. ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            4788888887643322   1   233466778888899999999988887765555443333332222221   11 112


Q ss_pred             CHHHHHHHHHHHHhh----CCC-------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHh
Q psy3701         161 NARLASKFFDLALSI----AHE-------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL  229 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~----~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      ..+..  .....+..    ..+       ...+...++.++...|++.+|...+.....-.-...               
T Consensus       109 ~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~---------------  171 (445)
T 4b4t_P          109 SLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM---------------  171 (445)
T ss_dssp             TTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS---------------
T ss_pred             chhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc---------------
Confidence            21211  11111111    111       234567899999999999999999998764322110               


Q ss_pred             hhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCCch----HHHHHHHHHHHHhCChHH
Q psy3701         230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV---VAPMKA----STFCCIGYIQALTGDLDS  302 (342)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~----~~~~~l~~~~~~~g~~~~  302 (342)
                                     ......+.+.....++...+++.+|...++++..   ..+..+    ..+...|.++...++|.+
T Consensus       172 ---------------~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~  236 (445)
T 4b4t_P          172 ---------------EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLE  236 (445)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             ---------------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence                           0011146777888999999999999999998743   223332    456778999999999999


Q ss_pred             HHHHHHHHHhc
Q psy3701         303 AVNYFHKTMAL  313 (342)
Q Consensus       303 A~~~~~~al~~  313 (342)
                      |-.+|..+...
T Consensus       237 a~~~y~e~~~~  247 (445)
T 4b4t_P          237 VAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.44  E-value=0.1  Score=48.97  Aligned_cols=98  Identities=7%  Similarity=-0.124  Sum_probs=77.9

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhcc----CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC-CCChHHHHHHH
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNL----FKGCHLPALYVGLECGLTNNARLASKFFDLALSIA-HEDPFVIHEMG  187 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  187 (342)
                      ..+..+...+++.|+.++|...+.+..+.    ...+...|..+...+.+.|+.++|.++|++..+.. .-+...++.+-
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            45788889999999999999999775432    22346778888889999999999999999987643 22677788888


Q ss_pred             HHHHHhcCh-hHHHHHHHHHHHhh
Q psy3701         188 VIAYQNHNY-TVAENCFMEALSKV  210 (342)
Q Consensus       188 ~~~~~~~~~-~~A~~~~~~al~~~  210 (342)
                      .++.+.|+. ++|..+|++..+..
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcC
Confidence            888888885 67889999887754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.35  E-value=0.024  Score=49.00  Aligned_cols=79  Identities=8%  Similarity=-0.023  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      .+..+|.+......++.|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5566788888888888999999999999999999999999998888888889988888888776677777776665543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.057  Score=46.06  Aligned_cols=106  Identities=12%  Similarity=0.067  Sum_probs=78.8

Q ss_pred             CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701         145 CHLPALYVGLECGLTNNARLASKFFDLALSIAHE---DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK  221 (342)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  221 (342)
                      ...++..+|..+...|++++|.+.|.++......   ..+.+.....++...+++..+...+.++-......+       
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~-------  202 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG-------  202 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC-------
Confidence            4457788999999999999999999998875433   246778888899999999999999999876644332       


Q ss_pred             hhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q psy3701         222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVA  280 (342)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  280 (342)
                                             ............|.++...++|.+|...|-.++...
T Consensus       203 -----------------------d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          203 -----------------------DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             -----------------------CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             -----------------------CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence                                   000012344455777778899999999998887654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.09  E-value=0.1  Score=43.80  Aligned_cols=59  Identities=5%  Similarity=-0.156  Sum_probs=53.1

Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSK  209 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  209 (342)
                      .++..+...|++.+++..+.+++..+|-+..++..+..++...|+..+|+..|+++.+.
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35666778899999999999999999999999999999999999999999999988664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.03  E-value=0.35  Score=46.91  Aligned_cols=144  Identities=12%  Similarity=0.003  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHH
Q psy3701         149 ALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNN  228 (342)
Q Consensus       149 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      ...+...+...+.++-+.+    .....|.++...+.+|.++...|++++|..+|+++-.--....    ..  ...   
T Consensus       815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~----~l--~~~---  881 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT----SQ--FAV---  881 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCC----CS--CSS---
T ss_pred             HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccc----hh--hhh---
Confidence            3345556677777776654    4456788888889999999999999999999998743211110    00  000   


Q ss_pred             hhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHHhCChHHH
Q psy3701         229 LGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA-----STFCCIGYIQALTGDLDSA  303 (342)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~g~~~~A  303 (342)
                          ....................|..+..++.+.|.++.++++.+.|++..+.+.     ..|..+-..+...|+|++|
T Consensus       882 ----~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A  957 (1139)
T 4fhn_B          882 ----LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA  957 (1139)
T ss_dssp             ----HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred             ----hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence                0000000111112233355677788889999999999999999998764332     2577788888999999999


Q ss_pred             HHHHHH
Q psy3701         304 VNYFHK  309 (342)
Q Consensus       304 ~~~~~~  309 (342)
                      ...+..
T Consensus       958 y~aL~~  963 (1139)
T 4fhn_B          958 HVALMV  963 (1139)
T ss_dssp             GHHHHH
T ss_pred             HHHHHh
Confidence            877643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.68  Score=39.61  Aligned_cols=197  Identities=9%  Similarity=-0.107  Sum_probs=117.5

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhH
Q psy3701          45 LENRALAADCYKGALLADLFKLAHELV---DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHS  121 (342)
Q Consensus        45 ~~~~~~A~~~~~~~~~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  121 (342)
                      .|++..|++.+...         ++-.   ...+....+...+...++..++++...+.+.-..........+-..+...
T Consensus        29 ~~~~~~a~e~ll~l---------EK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~   99 (445)
T 4b4t_P           29 QNDCNSALDQLLVL---------EKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQK   99 (445)
T ss_dssp             HHHHHHHHHHHHHH---------HHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH---------HHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            46777777765431         1111   12344577888899999999999988877765554443333332222221


Q ss_pred             H---H-hhccHHH--HHHHHHHHhccCCCC-------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC--CC----hHH
Q psy3701         122 F---A-VENEHDQ--AMAAYFNAFNLFKGC-------HLPALYVGLECGLTNNARLASKFFDLALSIAH--ED----PFV  182 (342)
Q Consensus       122 ~---~-~~g~~~~--A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~  182 (342)
                      .   . .....+.  -+...........+.       ......++.++...|++.+|...+.....-.-  .+    .++
T Consensus       100 ~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~  179 (445)
T 4b4t_P          100 VMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQF  179 (445)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            1   1 1111111  111111111111111       12335689999999999999999998764221  11    356


Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      +.....++...+++.+|...+.++....-..+.                             .+......+...|..+..
T Consensus       180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-----------------------------~~~lk~~~~~~~~~~~~~  230 (445)
T 4b4t_P          180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPK-----------------------------YESLKLEYYNLLVKISLH  230 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-----------------------------cHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999997542221110                             000013456667888888


Q ss_pred             hhhHHHHHHHHHHHHhh
Q psy3701         263 LKKYEEALEFHKQALVV  279 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~  279 (342)
                      .++|.+|-.+|..++..
T Consensus       231 e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          231 KREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhc
Confidence            88888888888887653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.13  Score=43.80  Aligned_cols=102  Identities=12%  Similarity=-0.027  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      ..++..+|..+...|++++|.+.|.++........                                 ...+.+..+..+
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---------------------------------~kid~~l~~irl  177 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG---------------------------------AKIDVMLTIARL  177 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC---------------------------------SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH---------------------------------HHHHHHHHHHHH
Confidence            45678999999999999999999999887655442                                 235788888899


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCC--Cch----HHHHHHHHHHHHhCChHHHHHHHHHHHhcc
Q psy3701         260 NRKLKKYEEALEFHKQALVVAP--MKA----STFCCIGYIQALTGDLDSAVNYFHKTMALK  314 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  314 (342)
                      +...+++..+...+.++-....  .++    ......|.++...++|.+|...|-.+....
T Consensus       178 ~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          178 GFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            9999999999999999865422  222    234456777888999999999998887653

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.06  Score=46.37  Aligned_cols=138  Identities=12%  Similarity=0.007  Sum_probs=60.2

Q ss_pred             HhhhCCHHHHHHHHHHHHh-----------hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhh
Q psy3701         156 CGLTNNARLASKFFDLALS-----------IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEP  224 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  224 (342)
                      +...+++++|.++....+.           +++-...+|+..+.++...|+.............+-|.-           
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L-----------  214 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM-----------  214 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHH-----------
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH-----------
Confidence            5566788888777665541           122345567777777777776655332222222111110           


Q ss_pred             HHHHhhhhHHHHHHHhch---hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHH
Q psy3701         225 LLNNLGHKAEDKVKQLGG---EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-------ASTFCCIGYIQ  294 (342)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~  294 (342)
                                  +..++.   .......+.++..+-..|...+.++.|..+..++.  .|..       ...++.+|.++
T Consensus       215 ------------l~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~  280 (523)
T 4b4t_S          215 ------------MKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKIN  280 (523)
T ss_dssp             ------------HHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHH
Confidence                        000000   00122235677888889999999999999999984  3422       34567789999


Q ss_pred             HHhCChHHHHHHHHHHHhcccCch
Q psy3701         295 ALTGDLDSAVNYFHKTMALKRDDS  318 (342)
Q Consensus       295 ~~~g~~~~A~~~~~~al~~~p~~~  318 (342)
                      .-.++|.+|.+++..|+...|.+.
T Consensus       281 a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          281 AIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             HHhccHHHHHHHHHHHHHhCCcch
Confidence            999999999999999999888654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.01  E-value=1.7  Score=40.79  Aligned_cols=125  Identities=14%  Similarity=0.063  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC------cH----HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC--c
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKL------FL----PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC--H  146 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~  146 (342)
                      -+++.+|.++...+  +++...+...+..+..      ..    .+-..+|.++.-.++ +++.+.+...+..+...  .
T Consensus       414 GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~  490 (963)
T 4ady_A          414 GSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGE  490 (963)
T ss_dssp             HHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHH
Confidence            34555555554444  3566666665543220      11    234456666655554 35555666655533211  1


Q ss_pred             hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHH
Q psy3701         147 LPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEA  206 (342)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  206 (342)
                      .+-+.+|.++.-.|+-+-....+..+.+...++......+|..+...|+.+.+....+..
T Consensus       491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L  550 (963)
T 4ady_A          491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKM  550 (963)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred             HHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Confidence            233346666666676665555555554433222222233344444556666555554443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.055  Score=46.59  Aligned_cols=143  Identities=13%  Similarity=0.023  Sum_probs=57.0

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHH----------HHHHH
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPAR----------RFLGK  103 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~----------~~~~~  103 (342)
                      ++.+.-..+...+++++|.++-......+-+..+.+ -..++-.+.+|+..+.++...|+.....          ..+-.
T Consensus       138 ~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nr-rtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~  216 (523)
T 4b4t_S          138 MHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNL-RSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK  216 (523)
T ss_dssp             ------------------------------------------------------------------CHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH
Confidence            333344445567778877776654321111110100 1234556778888888888777765432          12222


Q ss_pred             Hh-----hcCCC-cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC-------chHHHHHHHHHhhhCCHHHHHHHHH
Q psy3701         104 AT-----SLDKL-FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC-------HLPALYVGLECGLTNNARLASKFFD  170 (342)
Q Consensus       104 a~-----~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~  170 (342)
                      ++     ..++. ....+..+-+.|...+.++.|..+..++.  .|..       ...++++|.++...++|.+|.+++.
T Consensus       217 ~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~  294 (523)
T 4b4t_S          217 FLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII  294 (523)
T ss_dssp             HHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            22     22332 24567788899999999999999999985  4432       2334568999999999999999999


Q ss_pred             HHHhhCCCC
Q psy3701         171 LALSIAHED  179 (342)
Q Consensus       171 ~~~~~~~~~  179 (342)
                      .++...|.+
T Consensus       295 ~A~rkap~~  303 (523)
T 4b4t_S          295 AAIRKAPHN  303 (523)
T ss_dssp             HHTSSCSCS
T ss_pred             HHHHhCCcc
Confidence            999988754

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=91.79  E-value=6.9  Score=35.02  Aligned_cols=210  Identities=8%  Similarity=-0.146  Sum_probs=126.6

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhhcCCCcHH----HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhh
Q psy3701          84 VGCYYYLIGRSDPARRFLGKATSLDKLFLP----AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLT  159 (342)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  159 (342)
                      .+.......+.+.|...+.+.....+-+..    .+..++.-....+...++...+.+.....+++. ..-..+....+.
T Consensus       220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~  298 (618)
T 1qsa_A          220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGT  298 (618)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHC
Confidence            355555666889999998776543222222    233344444445545677777777655444333 333444455677


Q ss_pred             CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHH
Q psy3701         160 NNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ  239 (342)
Q Consensus       160 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (342)
                      |+++.|...|+++-...+..+...+-+|..+...|+.++|..+|+++...  .+     ...+ .+...+|....     
T Consensus       299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~~-----fYg~-lAa~~Lg~~~~-----  365 (618)
T 1qsa_A          299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--RG-----FYPM-VAAQRIGEEYE-----  365 (618)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CS-----HHHH-HHHHHTTCCCC-----
T ss_pred             CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CC-----hHHH-HHHHHcCCCCC-----
Confidence            99999999998876544456778899999999999999999999998752  22     0000 01111111000     


Q ss_pred             hchhccCC-CC----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHH
Q psy3701         240 LGGEIIAD-KW----EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHK  309 (342)
Q Consensus       240 ~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  309 (342)
                      .......+ ..    ...-...+..+...|....|...+.......  +..-...++.+....|.++.++....+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~~  438 (618)
T 1qsa_A          366 LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIA  438 (618)
T ss_dssp             CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            00000001 01    1123456677889999999999888877642  234455678888888888887765543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=90.89  E-value=2.8e-06  Score=71.36  Aligned_cols=38  Identities=13%  Similarity=0.162  Sum_probs=21.4

Q ss_pred             HHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         293 IQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       293 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      .|...|-+++-+..++.++.+..-+.....-|+-++.+
T Consensus       238 ~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK  275 (624)
T 3lvg_A          238 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  275 (624)
T ss_dssp             SSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred             HHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence            34455555555666666665555555555555555544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.60  E-value=11  Score=35.95  Aligned_cols=53  Identities=13%  Similarity=0.093  Sum_probs=42.4

Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHH
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEAL  207 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  207 (342)
                      .+...+...|.++-+    .+.+...|.++..-+.+|.++...|++++|..+|+++-
T Consensus       815 ~l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA  867 (950)
T 4gq2_M          815 ELVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS  867 (950)
T ss_dssp             HHHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            355556667777654    34567788888888999999999999999999999874

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.16  E-value=10  Score=30.46  Aligned_cols=62  Identities=10%  Similarity=-0.050  Sum_probs=40.7

Q ss_pred             CCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh---CChHHHHHHHHHH
Q psy3701         246 ADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT---GDLDSAVNYFHKT  310 (342)
Q Consensus       246 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a  310 (342)
                      ....+..+..+|..+.+.|++.+|..+|-..   +.+++..+..+-.-+...   |...++--+.-++
T Consensus       130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra  194 (312)
T 2wpv_A          130 KFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL  194 (312)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence            4567889999999999999999999988521   112444444443333444   7666665555554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=83.54  E-value=4.5e-05  Score=64.28  Aligned_cols=175  Identities=13%  Similarity=0.075  Sum_probs=116.4

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701          76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE  155 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  155 (342)
                      +.+.+|..+|.++...++..+|++.|-++  .+|+   .+.....+..+.|.+++=+.+++.+.+.. ..+..-..+..+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDteLi~a  125 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFA  125 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHHHHHH
Confidence            45677888888888888888888877654  2333   34444555567788888777777666553 334455567777


Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHH
Q psy3701         156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAED  235 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
                      |.+.++..+-.+.+     ..|+... ....|.-++..|.|+.|.-+|..+                             
T Consensus       126 yAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~lYeAAKilys~i-----------------------------  170 (624)
T 3lvg_A          126 LAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKMYDAAKLLYNNV-----------------------------  170 (624)
T ss_dssp             HHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCCSTTSSTTGGGS-----------------------------
T ss_pred             HHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccCHHHHHHHHHhC-----------------------------
Confidence            77777766533322     1233322 356777778888887776655321                             


Q ss_pred             HHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701         236 KVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM  311 (342)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  311 (342)
                                     .-|..|+.++..+|+|+.|++.-++|     +++.+|-..-.++...+++.-|.-+--..+
T Consensus       171 ---------------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniI  226 (624)
T 3lvg_A          171 ---------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV  226 (624)
T ss_dssp             ---------------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred             ---------------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence                           23345778888899999998876664     667788888888888888888776654443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=83.50  E-value=6.8  Score=27.09  Aligned_cols=55  Identities=16%  Similarity=0.103  Sum_probs=43.3

Q ss_pred             HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                      .+..+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus       100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3456677777777777766666777999999999999999999999999988765

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=83.10  E-value=3.9  Score=24.59  Aligned_cols=28  Identities=21%  Similarity=0.299  Sum_probs=13.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q psy3701         255 NLGHVNRKLKKYEEALEFHKQALVVAPM  282 (342)
Q Consensus       255 ~l~~~~~~~g~~~~A~~~~~~al~~~~~  282 (342)
                      .+|..+...|++++|..+|-+|+...|+
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            3444445555555555555555554443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.24  E-value=13  Score=35.39  Aligned_cols=94  Identities=11%  Similarity=-0.088  Sum_probs=58.5

Q ss_pred             HHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhcc---------------------C
Q psy3701          84 VGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNL---------------------F  142 (342)
Q Consensus        84 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------~  142 (342)
                      +...+...|.++-+.    ..+...|.++..-+.+|+++...|++++|..+|+++-.-                     .
T Consensus       816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            444555555555332    344455555555666777777777777777777655421                     0


Q ss_pred             CC--CchHHHHHHHHHhhhCCHHHHHHHHHHHHhhC-CCChH
Q psy3701         143 KG--CHLPALYVGLECGLTNNARLASKFFDLALSIA-HEDPF  181 (342)
Q Consensus       143 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  181 (342)
                      +.  ....|..+..++...+-++-+++..+.|+... ++++.
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~  933 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  933 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence            11  11245567888889999999999999999754 44544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	9e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 2e-15
 Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 36/258 (13%)

Query: 74  YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMA 133
            P+ A+AW  +GC +   G    A     KA +LD  FL A++  G+        D+A+A
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224

Query: 134 AYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN 193
           AY  A +L     +    +           LA   +  A+ +    P     +     + 
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284

Query: 194 HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLL 253
            +   AE+C+  AL                                             L
Sbjct: 285 GSVAEAEDCYNTALRLCPT------------------------------------HADSL 308

Query: 254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL 313
           NNL ++ R+    EEA+  +++AL V P  A+    +  +    G L  A+ ++ + + +
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

Query: 314 KRDDSFATTMLSYVIEQL 331
               + A + +   ++++
Sbjct: 369 SPTFADAYSNMGNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 7e-11
 Identities = 42/282 (14%), Positives = 100/282 (35%), Gaps = 2/282 (0%)

Query: 50  LAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK 109
           LA   Y+        +   +L    PD+      +   ++   R D +  F   A   + 
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFF 169
           L   A+   G+ +    +  +A+  Y +A  L        + +        +   A + +
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124

Query: 170 DLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNL 229
             AL    +   V  ++G +         A+ C+++A+         +       + N  
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF--AVAWSNLGCVFNAQ 182

Query: 230 GHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCC 289
           G              +   +     NLG+V ++ + ++ A+  + +AL ++P  A     
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 290 IGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQL 331
           +  +    G +D A++ + + + L+     A   L+  +++ 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 26/178 (14%), Positives = 46/178 (25%), Gaps = 13/178 (7%)

Query: 15  EGVSFFCWFSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLY 74
             V+ +     L          L   VY       LA D Y+ A+            +L 
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNL-ACVYYEQGLIDLAIDTYRRAI------------ELQ 267

Query: 75  PDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAA 134
           P    A+  +       G    A      A  L      +     +    +   ++A+  
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327

Query: 135 YFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ 192
           Y  A  +F         +          + A   +  A+ I+         MG    +
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 10/66 (15%), Positives = 18/66 (27%)

Query: 255 NLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALK 314
            L H   +   +E A     Q     P        +  I      LD + ++    +   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 315 RDDSFA 320
              + A
Sbjct: 64  PLLAEA 69

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 34/222 (15%), Positives = 60/222 (27%)

Query: 60  LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG 119
           LA + ++         + A   Y  G  Y  +G    AR    +A ++       +   G
Sbjct: 19  LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG 78

Query: 120 HSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHED 179
                    D A  A+ +   L    +   L  G+        +LA             D
Sbjct: 79  IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 138

Query: 180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQ 239
           PF    + +   +       E          K+  G  I + +   ++        K   
Sbjct: 139 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADA 198

Query: 240 LGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
                +A+        LG     L   + A    K A+    
Sbjct: 199 TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 6/140 (4%)

Query: 49  ALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLD 108
           AL+    + AL     +L  E +   P  A    +      + G  + A   L ++  L 
Sbjct: 6   ALSEGQLQQAL-----ELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

Query: 109 KLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYV-GLECGLTNNARLASK 167
             +LP      H                 A  L +   L    V      ++ +    S+
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120

Query: 168 FFDLALSIAHEDPFVIHEMG 187
                  +  E  F+ ++  
Sbjct: 121 LALQIEELRQEKGFLANDTS 140

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 35/274 (12%), Positives = 65/274 (23%), Gaps = 27/274 (9%)

Query: 23  FSQLQSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWY 82
           F +            +G       +   A   ++ A+               P    AW 
Sbjct: 10  FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV------------QQDPKHMEAWQ 57

Query: 83  AVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLF 142
            +G       +   A   L +   L      A +    SF  E+   QA     +     
Sbjct: 58  YLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT 117

Query: 143 KGCHLPALYVGLECGLTNNARL---------------ASKFFDLALSIAHEDPFVIHEMG 187
                         G                        + F  A+ +         + G
Sbjct: 118 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177

Query: 188 VIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIAD 247
           +    N +    +       +   +    ++ +K    L N     E          +  
Sbjct: 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237

Query: 248 KWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
            +     NLG     L  + EA+E   +AL +  
Sbjct: 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 7e-05
 Identities = 27/225 (12%), Positives = 70/225 (31%), Gaps = 16/225 (7%)

Query: 97  ARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC 156
           + ++L +A  L      + L     +            Y               Y   + 
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQD---LYQKMLVTDLE------YALDKK 55

Query: 157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGE 216
              +    A K     L    ++    +   V A  +     A   + + L ++  +   
Sbjct: 56  VEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN- 114

Query: 217 IIADKWEPLLNNLGHKAEDKVK-----QLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE 271
            +        + LG  +  +       +      +   +  L +LG + R   +  +A  
Sbjct: 115 -VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAES 173

Query: 272 FHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD 316
           +++ A  + P     +  +  + +  GD  + + Y+ +++A+K  
Sbjct: 174 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 18/221 (8%), Positives = 54/221 (24%), Gaps = 26/221 (11%)

Query: 71  VDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQ 130
             L  D   +       +          +   K    D           ++   + E D 
Sbjct: 13  EVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTD---------LEYALDKKVEQDL 60

Query: 131 AMAAYFNAFNLFKG----------CHLPALYVGLECGLTNNARLASKFFDLALSIAHEDP 180
              A+ N     +G            + A         +       +      ++     
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL 240
               ++G+I+ +  + +        + S + Q     + D    +       ++ +    
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGD----IARYRNQTSQAESYYR 176

Query: 241 GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP 281
               +        N L  +      +   + ++ +++ V  
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 9e-04
 Identities = 13/148 (8%), Positives = 35/148 (23%), Gaps = 10/148 (6%)

Query: 192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEI------- 244
           +     +  + F   ++ ++             +  NL    E         +       
Sbjct: 54  KKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF 113

Query: 245 -IADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSA 303
            +        + LG ++ K       ++    +             +G I         A
Sbjct: 114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQA 171

Query: 304 VNYFHKTMALKRDDSFATTMLSYVIEQL 331
            +Y+     L   +      L+ +    
Sbjct: 172 ESYYRHAAQLVPSNGQPYNQLAILASSK 199

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 30/251 (11%), Positives = 69/251 (27%), Gaps = 13/251 (5%)

Query: 38  KGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPA 97
           +  V + LE      +     L+          + + P S   W+        +   + A
Sbjct: 69  RREVLQHLETEKSPEESAA--LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126

Query: 98  R--RFLGKATSLDKLFLPAWLMY-GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGL 154
           R      +    D+     W      +        + +A   +        +    Y   
Sbjct: 127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186

Query: 155 ECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG 214
                +    +     L  ++  ++  ++         + +   A       L + + L 
Sbjct: 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS---AWFYHRWLLGRAEPL- 242

Query: 215 GEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPL-LNNLGHVNRKLKKYEEALEFH 273
                 +     + +     +  K+L      +KW  L +  L      L   +E L++ 
Sbjct: 243 ---FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299

Query: 274 KQALVVAPMKA 284
                V PM+A
Sbjct: 300 STLKAVDPMRA 310

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 12/79 (15%), Positives = 30/79 (37%)

Query: 253 LNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA 312
              LG+   K K ++ AL+ + +A  + P   +       +    GD +       K + 
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66

Query: 313 LKRDDSFATTMLSYVIEQL 331
           + R++      ++    ++
Sbjct: 67  VGRENREDYRQIAKAYARI 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.96
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.95
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.94
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.87
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.85
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.83
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.82
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.8
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.78
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.76
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.74
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.72
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.68
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.66
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.65
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.65
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.64
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.63
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.61
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.6
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.46
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.45
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.31
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.24
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.19
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.07
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.94
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.62
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.56
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.55
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.29
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.88
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	94.89
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.07
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.15

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-35  Score=247.55  Aligned_cols=281  Identities=15%  Similarity=0.134  Sum_probs=203.7

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHH
Q psy3701          37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWL  116 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  116 (342)
                      .+|..++..|++++|+..|++++            +.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   71 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLW------------RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS   71 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHH------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            46788888999999999998864            556666666666666666666666666666666666666666666


Q ss_pred             HhhhHHHhhccHHHHHHHHHH-----------------------------------------------------------
Q psy3701         117 MYGHSFAVENEHDQAMAAYFN-----------------------------------------------------------  137 (342)
Q Consensus       117 ~la~~~~~~g~~~~A~~~~~~-----------------------------------------------------------  137 (342)
                      .+|.++...|++++|+..+.+                                                           
T Consensus        72 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (388)
T d1w3ba_          72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL  151 (388)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCH
T ss_pred             HHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            666666555555555555544                                                           


Q ss_pred             -------------------------------------------HhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHh
Q psy3701         138 -------------------------------------------AFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALS  174 (342)
Q Consensus       138 -------------------------------------------al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  174 (342)
                                                                 +++.+|++..++..+|.++...|++++|+..++++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  231 (388)
T d1w3ba_         152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS  231 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence                                                       4444566666666666666666777777777777776


Q ss_pred             hCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhch-hccCCCChHHH
Q psy3701         175 IAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGG-EIIADKWEPLL  253 (342)
Q Consensus       175 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  253 (342)
                      ..|..+..+..+|.++...|++++|+..|+++++++|+++...  .....++...++. .++...+.. ....|.....+
T Consensus       232 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~  308 (388)
T d1w3ba_         232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY--CNLANALKEKGSV-AEAEDCYNTALRLCPTHADSL  308 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH--HHHHHHHHHHSCH-HHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCH-HHHHHHHHhhhccCCccchhh
Confidence            6777777777777777777777777777777777777663100  0011122222222 233333333 44567778899


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         254 NNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       254 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      ..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++++++|+++.++..|+.++.+++
T Consensus       309 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=230.21  Aligned_cols=239  Identities=19%  Similarity=0.106  Sum_probs=216.4

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHH
Q psy3701          35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPA  114 (342)
Q Consensus        35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  114 (342)
                      .+.+|..+...|++++|+..|+++            ++.+|+++.+|..+|.++...|++++|+.+|+++++++|+++..
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~a------------l~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   89 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAA------------VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA   89 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------------HHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccc
Confidence            467899999999999999999996            59999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH---------------HHHHHhhhCCHHHHHHHHHHHHhhCCCC
Q psy3701         115 WLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY---------------VGLECGLTNNARLASKFFDLALSIAHED  179 (342)
Q Consensus       115 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~  179 (342)
                      +..+|.++...|++++|+..+++++...|........               ....+...+.+.+|+..+.+++..+|+.
T Consensus        90 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~  169 (323)
T d1fcha_          90 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS  169 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred             cccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999875443221               2223455678899999999999999874


Q ss_pred             --hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHH
Q psy3701         180 --PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLG  257 (342)
Q Consensus       180 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  257 (342)
                        +.++..+|.++...|++++|+..+++++..+|++                                    +.++..+|
T Consensus       170 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~lg  213 (323)
T d1fcha_         170 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------------------------------------YLLWNKLG  213 (323)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHhhhhccccccccccccc------------------------------------ccchhhhh
Confidence              6788999999999999999999999999999988                                    58999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701         258 HVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT  321 (342)
Q Consensus       258 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  321 (342)
                      .++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++
T Consensus       214 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             hcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            9999999999999999999999999999999999999999999999999999999999987643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-29  Score=212.31  Aligned_cols=220  Identities=19%  Similarity=0.133  Sum_probs=209.2

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      ...+..+|..+...|++++|...++++            +..+|+++.++..+|.++...|++++|+..++++...+|..
T Consensus       169 ~~~~~~l~~~~~~~~~~~~A~~~~~~a------------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  236 (388)
T d1w3ba_         169 AVAWSNLGCVFNAQGEIWLAIHHFEKA------------VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH  236 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred             hHHHHhhcccccccCcHHHHHHHHHHH------------HHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH
Confidence            456667889999999999999999886            58899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY  191 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  191 (342)
                      +..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.+++++...|.+...+..+|.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHH
Q psy3701         192 QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALE  271 (342)
Q Consensus       192 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  271 (342)
                      ..|++++|+..|+++++++|++                                    +.++..+|.++...|++++|+.
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~------------------------------------~~~~~~la~~~~~~g~~~~A~~  360 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEF------------------------------------AAAHSNLASVLQQQGKLQEALM  360 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTC------------------------------------HHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCC------------------------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999988                                    5899999999999999999999


Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHhCC
Q psy3701         272 FHKQALVVAPMKASTFCCIGYIQALTGD  299 (342)
Q Consensus       272 ~~~~al~~~~~~~~~~~~l~~~~~~~g~  299 (342)
                      .|+++++++|+++.++.++|.++.++||
T Consensus       361 ~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         361 HYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-28  Score=200.78  Aligned_cols=221  Identities=14%  Similarity=0.094  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      ....+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.++++++|++...+..+|.++.
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCHHHHHHHHHHHHhhCCCChHHH---------------HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccch
Q psy3701         158 LTNNARLASKFFDLALSIAHEDPFVI---------------HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKW  222 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  222 (342)
                      ..|++++|++.+++++...|......               ......+...+.+.+|+..+.++++.+|...        
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~--------  170 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI--------  170 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC--------
T ss_pred             ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc--------
Confidence            99999999999999999988754321               1122334566788999999999999988763        


Q ss_pred             hhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHH
Q psy3701         223 EPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDS  302 (342)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  302 (342)
                                                .+.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++..+|++++
T Consensus       171 --------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  224 (323)
T d1fcha_         171 --------------------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  224 (323)
T ss_dssp             --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             --------------------------ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchh
Confidence                                      146888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         303 AVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       303 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      |+.+|+++++++|+++.++..+|.++...+
T Consensus       225 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  254 (323)
T d1fcha_         225 AVAAYRRALELQPGYIRSRYNLGISCINLG  254 (323)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHCC
Confidence            999999999999999999999999987765

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.1e-28  Score=196.52  Aligned_cols=224  Identities=10%  Similarity=0.041  Sum_probs=200.3

Q ss_pred             hcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhc-cHHHHHHHHHHHhccCCCCchHHH
Q psy3701          72 DLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVEN-EHDQAMAAYFNAFNLFKGCHLPAL  150 (342)
Q Consensus        72 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~  150 (342)
                      ..+|+..+++..+|.++...+.+++|+..++++++++|++..+|..+|.++...| ++++|+..++++++.+|.+..+|.
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3467778999999999999999999999999999999999999999999999887 489999999999999999999999


Q ss_pred             HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhh
Q psy3701         151 YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLG  230 (342)
Q Consensus       151 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  230 (342)
                      .+|.++..+|++++|+..++++++++|++..+|..+|.++...|++++|+..++++++++|.+                 
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n-----------------  179 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-----------------  179 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-----------------
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc-----------------
Confidence            999999999999999999999999999999999999999999999999999999999999998                 


Q ss_pred             hhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHH
Q psy3701         231 HKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK------YEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAV  304 (342)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  304 (342)
                                         ..+|.++|.++...+.      +++|+..+.++++.+|++..+|..++.++...| ..++.
T Consensus       180 -------------------~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~  239 (315)
T d2h6fa1         180 -------------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYP  239 (315)
T ss_dssp             -------------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCH
T ss_pred             -------------------HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHH
Confidence                               5899999999876654      789999999999999999999999998866544 68889


Q ss_pred             HHHHHHHhcccCch--hHHhHHHHHHHHhh
Q psy3701         305 NYFHKTMALKRDDS--FATTMLSYVIEQLI  332 (342)
Q Consensus       305 ~~~~~al~~~p~~~--~~~~~l~~~~~~~~  332 (342)
                      ..+++++++.|+..  .+...+..++....
T Consensus       240 ~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~  269 (315)
T d2h6fa1         240 NLLNQLLDLQPSHSSPYLIAFLVDIYEDML  269 (315)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcCCHHHHHHHHHHHHHHH
Confidence            99999998888754  44455666665443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-27  Score=191.38  Aligned_cols=251  Identities=9%  Similarity=-0.022  Sum_probs=216.1

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChHHHHHHHHHHhhcCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG-RSDPARRFLGKATSLDK  109 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~  109 (342)
                      -..++..+|.++...+.+++|+.+++++            +..+|++..+|+.+|.++...| ++++|+.+++++++.+|
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~a------------i~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p  109 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDA------------IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP  109 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHH------------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHH------------HHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence            3456667899999999999999999996            6999999999999999999987 58999999999999999


Q ss_pred             CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy3701         110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVI  189 (342)
Q Consensus       110 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  189 (342)
                      ++..+|..+|.++...|++++|+..+.++++++|.+..+|..+|.++...|++++|++.++++++++|.+..+|..+|.+
T Consensus       110 ~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~  189 (315)
T d2h6fa1         110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  189 (315)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC------hhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHh
Q psy3701         190 AYQNHN------YTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKL  263 (342)
Q Consensus       190 ~~~~~~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  263 (342)
                      +...++      +++|+..+.++++.+|.+                                    ..+|..++.++...
T Consensus       190 l~~~~~~~~~~~~~~ai~~~~~al~~~P~~------------------------------------~~~~~~l~~ll~~~  233 (315)
T d2h6fa1         190 ISNTTGYNDRAVLEREVQYTLEMIKLVPHN------------------------------------ESAWNYLKGILQDR  233 (315)
T ss_dssp             HHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHTTT
T ss_pred             HHHccccchhhhhHHhHHHHHHHHHhCCCc------------------------------------hHHHHHHHHHHHhc
Confidence            988776      578999999999999998                                    58999999887655


Q ss_pred             hhHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHh--CChHHHHHHHHHHH--------hcccCchhHHhHHHHHHHH
Q psy3701         264 KKYEEALEFHKQALVVAPMK--ASTFCCIGYIQALT--GDLDSAVNYFHKTM--------ALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       264 g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~--g~~~~A~~~~~~al--------~~~p~~~~~~~~l~~~~~~  330 (342)
                      | .+++...+++++++.|+.  +.++..++.++...  ++.+.+...+.+++        +.+|-....|..+++.++.
T Consensus       234 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~~  311 (315)
T d2h6fa1         234 G-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  311 (315)
T ss_dssp             C-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             C-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4 588889999999888764  45566677777543  45455555555544        3466555667777766654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.9e-26  Score=180.52  Aligned_cols=214  Identities=17%  Similarity=0.107  Sum_probs=177.9

Q ss_pred             CCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHH
Q psy3701          74 YPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVG  153 (342)
Q Consensus        74 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  153 (342)
                      +|..+.+++.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+|
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701         154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA  233 (342)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
                      .++..+|++++|+..++++++.+|.+......++......+..+.+...........+...                   
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  173 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW-------------------  173 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST-------------------
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh-------------------
Confidence            9999999999999999999999999999888888888888776666555555444433331                   


Q ss_pred             HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q psy3701         234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMAL  313 (342)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  313 (342)
                                    ........++. ....+.++.+...+.......|....+++.+|.++...|++++|+.+|++++..
T Consensus       174 --------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         174 --------------GWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             --------------HHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             --------------hhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence                          00001111111 123456677777777777778888889999999999999999999999999999


Q ss_pred             ccCchhHH
Q psy3701         314 KRDDSFAT  321 (342)
Q Consensus       314 ~p~~~~~~  321 (342)
                      +|++...+
T Consensus       239 ~p~~~~~~  246 (259)
T d1xnfa_         239 NVHNFVEH  246 (259)
T ss_dssp             CCTTCHHH
T ss_pred             CCCCHHHH
Confidence            99876444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=4.8e-27  Score=194.34  Aligned_cols=266  Identities=8%  Similarity=-0.150  Sum_probs=218.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC----------ChHHHHHHHHHHhhcCCCcHHHH
Q psy3701          46 ENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIG----------RSDPARRFLGKATSLDKLFLPAW  115 (342)
Q Consensus        46 ~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~  115 (342)
                      +..++|+.++++            ++..+|++..+|..++.++...+          ++++|+.+++++++.+|+++.+|
T Consensus        43 ~~~~~al~~~~~------------~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~  110 (334)
T d1dcea1          43 ELDESVLELTSQ------------ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW  110 (334)
T ss_dssp             CCSHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccHHHHHHHHH------------HHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence            334677777777            46999999999988887766544          47899999999999999999999


Q ss_pred             HHhhhHHHhhcc--HHHHHHHHHHHhccCCCCchHHH-HHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy3701         116 LMYGHSFAVENE--HDQAMAAYFNAFNLFKGCHLPAL-YVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ  192 (342)
Q Consensus       116 ~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  192 (342)
                      ..+|.++...++  +++|+..+.++++.+|.+..++. ..|.++...+++++|+..+++++..+|++..+|..+|.++..
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999888765  89999999999999999888865 577889999999999999999999999999999999999999


Q ss_pred             hcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHH
Q psy3701         193 NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEF  272 (342)
Q Consensus       193 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  272 (342)
                      .|++++|+..+++++...|....     .. .....++................+.....+..+|.++...|++.+|+..
T Consensus       191 ~~~~~~A~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  264 (334)
T d1dcea1         191 LHPQPDSGPQGRLPENVLLKELE-----LV-QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE  264 (334)
T ss_dssp             HSCCCCSSSCCSSCHHHHHHHHH-----HH-HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHhHHhHHHHHH-----HH-HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999888888877630     00 0111111111111111112234455556677889999999999999999


Q ss_pred             HHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         273 HKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       273 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      +.+++..+|.+..++..+|.++...|++++|+.+|+++++++|++...+..|+..+.
T Consensus       265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998888866553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.8e-24  Score=169.72  Aligned_cols=210  Identities=16%  Similarity=0.117  Sum_probs=174.0

Q ss_pred             hhHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhh
Q psy3701          27 QSEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATS  106 (342)
Q Consensus        27 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  106 (342)
                      .+...+.+++.+|.+|...|++++|+..|+++            +..+|+++.+|+.+|.++...|++++|+..|+++++
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~a------------l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQA------------LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHh------------hccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            34567889999999999999999999999997            589999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q psy3701         107 LDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEM  186 (342)
Q Consensus       107 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  186 (342)
                      ++|+++.++..+|.++...|++++|+..++++++.+|.+......++..+...+..+.+...........+.....  .+
T Consensus       100 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  177 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NI  177 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HH
T ss_pred             HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh--hH
Confidence            9999999999999999999999999999999999999998888888888888887777666666666555544321  11


Q ss_pred             HHHHH----HhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         187 GVIAY----QNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       187 ~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      ...+.    ..+.++.+...+.......|..                                    ..+++.+|.++..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~lg~~~~~  221 (259)
T d1xnfa_         178 VEFYLGNISEQTLMERLKADATDNTSLAEHL------------------------------------SETNFYLGKYYLS  221 (259)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH------------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCccc------------------------------------HHHHHHHHHHHHH
Confidence            11111    2233445555555555555555                                    5789999999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHH
Q psy3701         263 LKKYEEALEFHKQALVVAPMKAST  286 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~  286 (342)
                      .|++++|+..|++++..+|++...
T Consensus       222 ~g~~~~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         222 LGDLDSATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             TTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCCHHH
Confidence            999999999999999999987533

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.5e-21  Score=161.07  Aligned_cols=238  Identities=10%  Similarity=-0.096  Sum_probs=185.1

Q ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC--hHHHHHHHHHHhhcCCCcHHHH-HHh
Q psy3701          42 YEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGR--SDPARRFLGKATSLDKLFLPAW-LMY  118 (342)
Q Consensus        42 ~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~-~~l  118 (342)
                      +...|.+++|+.++++            ++..+|+++.+|..+|.++...++  +++|+..++++++.+|.+..++ ...
T Consensus        83 ~~~~~~~~~al~~~~~------------~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~  150 (334)
T d1dcea1          83 EESAALVKAELGFLES------------CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR  150 (334)
T ss_dssp             HHHHHHHHHHHHHHHH------------HHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH------------HHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHH
Confidence            3344445555555555            579999999999999999988775  7899999999999999998886 467


Q ss_pred             hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhH
Q psy3701         119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV  198 (342)
Q Consensus       119 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  198 (342)
                      |.++...+++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.....    ...+...+..++
T Consensus       151 ~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~  226 (334)
T d1dcea1         151 FVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL----VQNAFFTDPNDQ  226 (334)
T ss_dssp             HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHH----HHHHHHHCSSCS
T ss_pred             HHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHH----HHHHHHhcchhH
Confidence            8899999999999999999999999999999999999999999998888888777776654433    334456677788


Q ss_pred             HHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy3701         199 AENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV  278 (342)
Q Consensus       199 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  278 (342)
                      +...+.+++...|......  ......+...++..+............|....++..+|.++...|++++|+.+|+++++
T Consensus       227 a~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         227 SAWFYHRWLLGRAEPLFRC--ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             HHHHHHHHHHSCCCCSSSC--CCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcchhhHH--HHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888777664211  11122333333333333222233445566678999999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHHHh
Q psy3701         279 VAPMKASTFCCIGYIQALT  297 (342)
Q Consensus       279 ~~~~~~~~~~~l~~~~~~~  297 (342)
                      ++|.....|..++..+...
T Consensus       305 ldP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         305 VDPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HCGGGHHHHHHHHHHHHHH
T ss_pred             HCcccHHHHHHHHHHHhHh
Confidence            9999999999998887753

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.1e-19  Score=148.92  Aligned_cols=295  Identities=10%  Similarity=-0.015  Sum_probs=220.4

Q ss_pred             hHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701          28 SEMKSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDS-----AIAWYAVGCYYYLIGRSDPARRFLG  102 (342)
Q Consensus        28 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~  102 (342)
                      +...++....+|.++...|++++|+..|+++            +...|++     ..++..+|.++...|++++|+..|+
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~a------------L~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~   75 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLA------------LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQ   75 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4456777778999999999999999999997            4777765     4578889999999999999999999


Q ss_pred             HHhhcCCCc------HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC--------CchHHHHHHHHHhhhCCHHHHHHH
Q psy3701         103 KATSLDKLF------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG--------CHLPALYVGLECGLTNNARLASKF  168 (342)
Q Consensus       103 ~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~  168 (342)
                      ++++..+..      ..++..++.++...|++..|...+.+++...+.        .......+|.++...|+++.+...
T Consensus        76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~  155 (366)
T d1hz4a_          76 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS  155 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHH
Confidence            999875433      356788999999999999999999999876432        123456689999999999999999


Q ss_pred             HHHHHhhCCCC-----hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchh----hHHHHhhhhHHHHHHH
Q psy3701         169 FDLALSIAHED-----PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWE----PLLNNLGHKAEDKVKQ  239 (342)
Q Consensus       169 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  239 (342)
                      +.++....+..     ...+...+..+...+++.++...+.++....+............    ............+...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  235 (366)
T d1hz4a_         156 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW  235 (366)
T ss_dssp             HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHH
Confidence            99999876643     45677889999999999999999999998776553111111110    1111111222233333


Q ss_pred             hchh-----ccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHhCChHHHHHHHH
Q psy3701         240 LGGE-----IIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVV------APMKASTFCCIGYIQALTGDLDSAVNYFH  308 (342)
Q Consensus       240 ~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  308 (342)
                      +...     ...+.....+.++|.++...|++++|+..+++++..      .|....++..+|.++...|++++|++.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         236 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3321     122334567788999999999999999999999854      34556789999999999999999999999


Q ss_pred             HHHhcccCchhH------HhHHHHHHHHhhhc
Q psy3701         309 KTMALKRDDSFA------TTMLSYVIEQLIEE  334 (342)
Q Consensus       309 ~al~~~p~~~~~------~~~l~~~~~~~~~~  334 (342)
                      +++++.+.....      ...+...+..+...
T Consensus       316 ~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  347 (366)
T d1hz4a_         316 DALKLANRTGFISHFVIEGEAMAQQLRQLIQL  347 (366)
T ss_dssp             HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhc
Confidence            999987643322      22345555555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-21  Score=169.62  Aligned_cols=227  Identities=11%  Similarity=0.039  Sum_probs=162.6

Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCC
Q psy3701          65 KLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKG  144 (342)
Q Consensus        65 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  144 (342)
                      ..+++++...|+.++++..+|.++...|++++|   |++++..+|+....+...+.+  ....+..+++.+++..+....
T Consensus         7 q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~L--w~~~y~~~ie~~r~~~k~~~~   81 (497)
T d1ya0a1           7 QYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL--WNHAFKNQITTLQGQAKNRAN   81 (497)
T ss_dssp             HHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHH--HHHHTHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHH--HHHHHHHHHHHHHHhcccccC
Confidence            333335689999999999999999999999876   899999999877665333322  233467788888888876533


Q ss_pred             C--ch-HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccc
Q psy3701         145 C--HL-PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADK  221 (342)
Q Consensus       145 ~--~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  221 (342)
                      .  .. .....+.+....+.|+.|+..+.+++..+|.+...+..+|.++...|++++|+..+++++..++..        
T Consensus        82 ~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--------  153 (497)
T d1ya0a1          82 PNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH--------  153 (497)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHH--------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH--------
Confidence            2  22 222345666678899999999999999999999999999999999999999999999999877654        


Q ss_pred             hhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChH
Q psy3701         222 WEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLD  301 (342)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  301 (342)
                                                    ++.++|.++...|++++|+.+|+++++++|++..+++++|.++...|++.
T Consensus       154 ------------------------------~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~  203 (497)
T d1ya0a1         154 ------------------------------CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHL  203 (497)
T ss_dssp             ------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHH
T ss_pred             ------------------------------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHH
Confidence                                          78889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCchhHHhHHHHHHHHhhhc
Q psy3701         302 SAVNYFHKTMALKRDDSFATTMLSYVIEQLIEE  334 (342)
Q Consensus       302 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  334 (342)
                      +|+.+|.+++..+|..+.++.+|+.++....+.
T Consensus       204 ~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         204 TTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999876544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=5.5e-18  Score=137.62  Aligned_cols=216  Identities=13%  Similarity=0.083  Sum_probs=190.4

Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHh--------------CChHHHHHHHHHHhhc-CCCcHHHHHHhhhHHHhhccHHHHHH
Q psy3701          69 ELVDLYPDSAIAWYAVGCYYYLI--------------GRSDPARRFLGKATSL-DKLFLPAWLMYGHSFAVENEHDQAMA  133 (342)
Q Consensus        69 ~~~~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~  133 (342)
                      +++...|.++..|...+......              +..++|...|+++++. .|.+...|..++......|+++.|..
T Consensus        41 rAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~  120 (308)
T d2onda1          41 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS  120 (308)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHH
Confidence            34688899999999888766443              3458899999999974 78888999999999999999999999


Q ss_pred             HHHHHhccCCCCch-HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hcChhHHHHHHHHHHHhhh
Q psy3701         134 AYFNAFNLFKGCHL-PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ-NHNYTVAENCFMEALSKVK  211 (342)
Q Consensus       134 ~~~~al~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~  211 (342)
                      .|++++...|.+.. +|...+......|+++.|.+.|+++++..|.+...+...+..... .|+.+.|..+|++++...|
T Consensus       121 i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p  200 (308)
T d2onda1         121 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG  200 (308)
T ss_dssp             HHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh
Confidence            99999999998754 678899999999999999999999999999999999999887554 6899999999999999999


Q ss_pred             hcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCch----HHH
Q psy3701         212 QLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKA----STF  287 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~  287 (342)
                      .+                                    +..|...+..+...|++++|...|++++...|.++    ..|
T Consensus       201 ~~------------------------------------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw  244 (308)
T d2onda1         201 DI------------------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW  244 (308)
T ss_dssp             TC------------------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred             hh------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            98                                    58999999999999999999999999999877544    467


Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhcccCchhH
Q psy3701         288 CCIGYIQALTGDLDSAVNYFHKTMALKRDDSFA  320 (342)
Q Consensus       288 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  320 (342)
                      ..........|+.+.+...++++.+..|+....
T Consensus       245 ~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~  277 (308)
T d2onda1         245 ARFLAFESNIGDLASILKVEKRRFTAFREEYEG  277 (308)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence            777888888999999999999999999987643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2.1e-19  Score=144.77  Aligned_cols=221  Identities=12%  Similarity=0.003  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhhcCC------CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCC------ch
Q psy3701          80 AWYAVGCYYYLIGRSDPARRFLGKATSLDK------LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGC------HL  147 (342)
Q Consensus        80 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~  147 (342)
                      .|...|.+|...+++++|+.+|.+++++.+      .....+..+|.+|...|++++|+..|++++++.+..      ..
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            344458899999999999999999998732      235678999999999999999999999999986654      34


Q ss_pred             HHHHHHHHHhh-hCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc
Q psy3701         148 PALYVGLECGL-TNNARLASKFFDLALSIAHED------PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD  220 (342)
Q Consensus       148 ~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  220 (342)
                      ++..+|.++.. .|++++|++.+++++.+.+..      ..++..+|.++..+|+|++|+..|++++...+..+.     
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~-----  193 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-----  193 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-----
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh-----
Confidence            56678887754 699999999999998865432      356889999999999999999999999998887740     


Q ss_pred             chhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchH-----HHHHHHHHHH
Q psy3701         221 KWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKAS-----TFCCIGYIQA  295 (342)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~l~~~~~  295 (342)
                                              ........+...|.++...|++..|...++++++.+|....     ....+..++.
T Consensus       194 ------------------------~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~  249 (290)
T d1qqea_         194 ------------------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN  249 (290)
T ss_dssp             ------------------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred             ------------------------hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence                                    01111346778899999999999999999999999886543     3344555544


Q ss_pred             H--hCChHHHHHHHHHHHhcccCchhHHhHHHHHHH
Q psy3701         296 L--TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIE  329 (342)
Q Consensus       296 ~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  329 (342)
                      .  .+.+++|+..|.++.+++|........+...++
T Consensus       250 ~~d~e~~~eai~~y~~~~~lD~~~~~~L~~~k~~le  285 (290)
T d1qqea_         250 EGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQ  285 (290)
T ss_dssp             TTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhc
Confidence            4  456899999999988887655444444444333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-18  Score=120.08  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      +...|..++..|++++|+..|+++++.+|.+                                    +.+|.++|.++..
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~------------------------------------~~~~~~~a~~~~~   49 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN------------------------------------HVLYSNRSAAYAK   49 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc------------------------------------hhhhhcccccccc
Confidence            4567888888888888888888888888888                                    5788888888888


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      +|++++|+..++++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..++.+-
T Consensus        50 ~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          50 KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             cccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            888888888888888888888888888888888889999999999999888888888888877664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.4e-18  Score=128.34  Aligned_cols=132  Identities=16%  Similarity=0.211  Sum_probs=115.0

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcH
Q psy3701          33 ALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFL  112 (342)
Q Consensus        33 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  112 (342)
                      ..++..|..+...|+|++|++.|.+.               .|.++.+|+++|.++..+|++++|+.+|+++++++|+++
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~i---------------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~   70 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSAV---------------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA   70 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS---------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh
Confidence            34556899999999999999999873               456788999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc----------------hHHHHHHHHHhhhCCHHHHHHHHHHHHhhC
Q psy3701         113 PAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH----------------LPALYVGLECGLTNNARLASKFFDLALSIA  176 (342)
Q Consensus       113 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  176 (342)
                      .+|..+|.++..+|++++|+..|++++...+.+.                .+++.+|.++...|++++|++.+++++...
T Consensus        71 ~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          71 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999998766532                345678888888888888888888888887


Q ss_pred             CCC
Q psy3701         177 HED  179 (342)
Q Consensus       177 ~~~  179 (342)
                      |+.
T Consensus       151 ~~~  153 (192)
T d1hh8a_         151 SEP  153 (192)
T ss_dssp             CSG
T ss_pred             CCc
Confidence            764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.6e-18  Score=139.77  Aligned_cols=245  Identities=10%  Similarity=-0.060  Sum_probs=174.6

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCC
Q psy3701          31 KSALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKL  110 (342)
Q Consensus        31 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  110 (342)
                      ...++..+|.++...|++++|+..|++++.     +... ....+....++..++.++...|++..|...+.+++...+.
T Consensus        50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~  123 (366)
T d1hz4a_          50 RIVATSVLGEVLHCKGELTRSLALMQQTEQ-----MARQ-HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE  123 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            355777899999999999999999999741     1110 0112233567788899999999999999999998865322


Q ss_pred             --------cHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCc-----hHHHHHHHHHhhhCCHHHHHHHHHHHHhhCC
Q psy3701         111 --------FLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCH-----LPALYVGLECGLTNNARLASKFFDLALSIAH  177 (342)
Q Consensus       111 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  177 (342)
                              ....+..+|.++...|+++.+...+.++....+...     .++...+..+...+++.++...+.++....+
T Consensus       124 ~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  203 (366)
T d1hz4a_         124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  203 (366)
T ss_dssp             TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence                    234677889999999999999999999998776533     3445577788888999999999888877543


Q ss_pred             C-------ChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCcccccc--chhhHHHHhhhhH------HHHHHHhch
Q psy3701         178 E-------DPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIAD--KWEPLLNNLGHKA------EDKVKQLGG  242 (342)
Q Consensus       178 ~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~  242 (342)
                      .       ...++...+.++...|++++|...+++++...+.++......  ....++...++..      ...+.....
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  283 (366)
T d1hz4a_         204 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS  283 (366)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence            2       234567788888999999999999999888776653111100  0112222233221      122222222


Q ss_pred             hccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Q psy3701         243 EIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAP  281 (342)
Q Consensus       243 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  281 (342)
                      ....+....++..+|.++...|++++|++.+++++++.+
T Consensus       284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            344555677899999999999999999999999998754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-18  Score=119.74  Aligned_cols=112  Identities=13%  Similarity=0.057  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701          79 IAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus        79 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      .-+...|..++..|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+..+.++++++|+++.+++.+|.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         159 TNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                      +|++++|+..|+++++.+|+++.++..++.+.
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999999999999888764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.5e-17  Score=124.88  Aligned_cols=95  Identities=18%  Similarity=0.180  Sum_probs=70.2

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcC
Q psy3701         116 LMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHN  195 (342)
Q Consensus       116 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  195 (342)
                      +..|..+...|++++|++.|.++   .|.++.+++.+|.++..+|++++|++.|+++++++|+++.+|.++|.++..+|+
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence            35677777777777777777653   444566777777777777777777777777777777777777777777777777


Q ss_pred             hhHHHHHHHHHHHhhhhc
Q psy3701         196 YTVAENCFMEALSKVKQL  213 (342)
Q Consensus       196 ~~~A~~~~~~al~~~~~~  213 (342)
                      +++|+..|++++...+.+
T Consensus        86 ~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHhCccC
Confidence            777777777777766655

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.4e-18  Score=123.56  Aligned_cols=128  Identities=11%  Similarity=-0.036  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      +..+...|..++..|+|++|+.+|+++++++|+++.+|..+|.++...|++++|+..|+++++++|.+..++..+|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH--HhcChhHHHHHHHH
Q psy3701         158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAY--QNHNYTVAENCFME  205 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~  205 (342)
                      .+|++++|+..+++++.+.|+++.++..++.+..  ..+.+++|+.....
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            9999999999999999999999999888877754  34456666654433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=7.5e-18  Score=135.56  Aligned_cols=215  Identities=12%  Similarity=0.045  Sum_probs=164.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      ...+...|.+|...+++++|+.+|.++.     .+..+ ....+....++..+|.+|...|++++|+.++++++++.+..
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~-----~~~~~-~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~  110 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAA-----DYQKK-AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR  110 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHH-----HHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHH-----HHHHH-cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc
Confidence            4567779999999999999999999974     22222 12233456789999999999999999999999999876654


Q ss_pred             ------HHHHHHhhhHHHh-hccHHHHHHHHHHHhccCCCC------chHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCC
Q psy3701         112 ------LPAWLMYGHSFAV-ENEHDQAMAAYFNAFNLFKGC------HLPALYVGLECGLTNNARLASKFFDLALSIAHE  178 (342)
Q Consensus       112 ------~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  178 (342)
                            ..++..+|.++.. .|++++|+..|++++++.+..      ..++..+|.++..+|++++|+..|++++...|.
T Consensus       111 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~  190 (290)
T d1qqea_         111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence                  4568888988855 699999999999999875432      345677999999999999999999999998876


Q ss_pred             Ch-------HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChH
Q psy3701         179 DP-------FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEP  251 (342)
Q Consensus       179 ~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
                      .+       ..+...|.++...|++..|...++++++++|..+                               ......
T Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~-------------------------------~sre~~  239 (290)
T d1qqea_         191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA-------------------------------DSRESN  239 (290)
T ss_dssp             CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------------------------------------HH
T ss_pred             chhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc-------------------------------chHHHH
Confidence            64       3567888999999999999999999999988763                               111123


Q ss_pred             HHHHHHHHHHH--hhhHHHHHHHHHHHHhhCCCc
Q psy3701         252 LLNNLGHVNRK--LKKYEEALEFHKQALVVAPMK  283 (342)
Q Consensus       252 ~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~  283 (342)
                      ....++.++..  .+.+++|+..|+++.+++|-.
T Consensus       240 ~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~  273 (290)
T d1qqea_         240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (290)
T ss_dssp             HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHH
Confidence            44555555544  456899999998877776533

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.1e-17  Score=120.35  Aligned_cols=122  Identities=13%  Similarity=0.062  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHH
Q psy3701         148 PALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLN  227 (342)
Q Consensus       148 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  227 (342)
                      .+...|..++..|++++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++++|.+              
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~--------------   77 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--------------   77 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc--------------
Confidence            455677888888888888888888888888888888888888888888888888888888888887              


Q ss_pred             HhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH--hCChHHHHH
Q psy3701         228 NLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL--TGDLDSAVN  305 (342)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~  305 (342)
                                            ..++..+|.++..+|++++|+..+++++.++|+++.++..++.+...  .+.+++|+.
T Consensus        78 ----------------------~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          78 ----------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                  57888888888888888888888888888888888877777666433  333444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=5.2e-16  Score=125.79  Aligned_cols=190  Identities=10%  Similarity=-0.015  Sum_probs=167.0

Q ss_pred             hHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh--------------hccHHHHHHHHHHHhcc-CCCCchHHHHHHHHHhh
Q psy3701          94 SDPARRFLGKATSLDKLFLPAWLMYGHSFAV--------------ENEHDQAMAAYFNAFNL-FKGCHLPALYVGLECGL  158 (342)
Q Consensus        94 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------------~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~  158 (342)
                      .+.+...|++|+...|.++..|+..+.....              .+..++|...|+++++. .|.+...|...+.....
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            3557778999999999999999988776543              34568999999999985 67778888899999999


Q ss_pred             hCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHH
Q psy3701         159 TNNARLASKFFDLALSIAHEDP-FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKV  237 (342)
Q Consensus       159 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (342)
                      .|+++.|...|++++...|.+. .+|..++......|+++.|...|+++++..|.+                        
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~------------------------  167 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------------------------  167 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------------------------
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------------------------
Confidence            9999999999999999999875 478999999999999999999999999999888                        


Q ss_pred             HHhchhccCCCChHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccC
Q psy3701         238 KQLGGEIIADKWEPLLNNLGHVNR-KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  316 (342)
                                  ...+...+.... ..|+.+.|...|++++...|+++..|...+..+...|+++.|+..|++++...|.
T Consensus       168 ------------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         168 ------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             ------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             ------------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence                        467777777654 4689999999999999999999999999999999999999999999999998776


Q ss_pred             chh
Q psy3701         317 DSF  319 (342)
Q Consensus       317 ~~~  319 (342)
                      ++.
T Consensus       236 ~~~  238 (308)
T d2onda1         236 PPE  238 (308)
T ss_dssp             CGG
T ss_pred             ChH
Confidence            553

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1e-17  Score=127.27  Aligned_cols=106  Identities=17%  Similarity=0.093  Sum_probs=86.3

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLEC  156 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  156 (342)
                      ++..+...|..++..|++++|+..|+++++++|.++.+|..+|.+|...|++++|+..|+++++++|+++.+++.+|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45567778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFV  182 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~  182 (342)
                      ..+|++++|+..|++++.++|++...
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            88888888888888888777654433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.3e-16  Score=114.96  Aligned_cols=132  Identities=17%  Similarity=0.155  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHH
Q psy3701         181 FVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVN  260 (342)
Q Consensus       181 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  260 (342)
                      ..+...|..++..|+|++|+..|++++...|...+...     .......                .....++.++|.+|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~-----~~~~~~~----------------~~~~~~~~nla~~y   72 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-----EEAQKAQ----------------ALRLASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-----HHHHHHH----------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch-----HHHhhhc----------------hhHHHHHHHHHHHH
Confidence            44667899999999999999999999998877641100     0000000                00135788999999


Q ss_pred             HHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         261 RKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       261 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      .++|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+.....+
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999888765543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.1e-17  Score=110.34  Aligned_cols=114  Identities=5%  Similarity=-0.012  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH-
Q psy3701         184 HEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK-  262 (342)
Q Consensus       184 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  262 (342)
                      ..++..+...+++++|.+.|++++..+|.+                                    +.+++++|.++.+ 
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~------------------------------------~~~~~n~a~~L~~s   46 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVS------------------------------------KSTQFEYAWCLVRT   46 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCC------------------------------------HHHHHHHHHHHTTS
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCC------------------------------------HHHHHHHHHHHHHh
Confidence            356778889999999999999999999999                                    6899999999976 


Q ss_pred             --hhhHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         263 --LKKYEEALEFHKQALVVAPMK--ASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       263 --~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                        .+++++|+..|++++..+|..  ..+++++|.+|..+|++++|+.+|+++++++|++..+...++.+.++..+
T Consensus        47 ~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          47 RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence              567788999999999988765  45899999999999999999999999999999999999999988887654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.71  E-value=6.6e-16  Score=111.24  Aligned_cols=132  Identities=17%  Similarity=0.101  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701         182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR  261 (342)
Q Consensus       182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (342)
                      .+...|..++..|+|.+|+..|++++...+..........+     ....               +....++.++|.+|.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~-----~~~~---------------~~~~~~~~Nla~~~~   78 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL-----DKKK---------------NIEISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH-----HHHH---------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH-----Hhhh---------------hHHHHHHhhHHHHHH
Confidence            45667888889999999999999999877655311000000     0000               001357889999999


Q ss_pred             HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       262 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      ++|++++|+..++++++++|.+..+|+.+|.++..+|++++|+.+|+++++++|+++.+...+..+..++.+
T Consensus        79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988877654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.5e-17  Score=124.27  Aligned_cols=117  Identities=20%  Similarity=0.105  Sum_probs=104.1

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF  111 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  111 (342)
                      +..+...|..++..|+|++|+..|+++            +..+|.++.+|.++|.+|...|++++|+.+|+++++++|++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~ka------------l~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~   71 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRA------------ITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------------HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc
Confidence            445667899999999999999999996            58899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701         112 LPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN  160 (342)
Q Consensus       112 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  160 (342)
                      +.+|+.+|.++..+|++++|+..|+++++++|.....+...+..+...+
T Consensus        72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~  120 (201)
T d2c2la1          72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA  120 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876655554444444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-15  Score=112.34  Aligned_cols=131  Identities=15%  Similarity=0.062  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---------------HHHHHHhhhHHHhhccHHHHHHHHHHHhccC
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---------------LPAWLMYGHSFAVENEHDQAMAAYFNAFNLF  142 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  142 (342)
                      +..+...|..++..|++++|+..|++++...|..               ..++.++|.+|...|++++|+..+++++.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            5667889999999999999999999999887653               2457789999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHH-HHHHHHH
Q psy3701         143 KGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAEN-CFMEALS  208 (342)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~  208 (342)
                      |+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....++..+... .|.+.+.
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  159 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  159 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887776655432 3444333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.1e-16  Score=133.07  Aligned_cols=210  Identities=11%  Similarity=-0.024  Sum_probs=135.6

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC--Cc
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK--LF  111 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~  111 (342)
                      .++.+|.++...+++++|   |+++            +..+|+.+......+...  ...+..+++.+++..+...  +.
T Consensus        22 a~~~la~~~~~~~~l~ea---ye~~------------i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~~~   84 (497)
T d1ya0a1          22 SKLGPAEVWTSRQALQDL---YQKM------------LVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRANPNR   84 (497)
T ss_dssp             SSSCSSSSHHHHHHHHHH---HHHH------------HHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSSCTTT
T ss_pred             HHhhHHHHHHHHchHHHH---HHHH------------HHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcccccCccH
Confidence            445678888888888765   6664            567777666544333222  2235677788877776442  22


Q ss_pred             HH-HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy3701         112 LP-AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIA  190 (342)
Q Consensus       112 ~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  190 (342)
                      .. ....++.+....+.|+.|+..+++++.++|.+...+..+|..+...|+.++|+..+++++..+|  ..++..+|.++
T Consensus        85 ~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~  162 (497)
T d1ya0a1          85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIA  162 (497)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHH
Confidence            22 2233456667788899999999999999999888899999999999999999999998887765  46788899999


Q ss_pred             HHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHH
Q psy3701         191 YQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEAL  270 (342)
Q Consensus       191 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  270 (342)
                      ...|++++|+.+|+++++++|+++                                    ..++++|.++...|++.+|+
T Consensus       163 ~~~~~~~~A~~~y~~A~~l~P~~~------------------------------------~~~~~Lg~~~~~~~~~~~A~  206 (497)
T d1ya0a1         163 RYRNQTSQAESYYRHAAQLVPSNG------------------------------------QPYNQLAILASSKGDHLTTI  206 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTBS------------------------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCch------------------------------------HHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999984                                    89999999999999999999


Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHHhC
Q psy3701         271 EFHKQALVVAPMKASTFCCIGYIQALTG  298 (342)
Q Consensus       271 ~~~~~al~~~~~~~~~~~~l~~~~~~~g  298 (342)
                      .+|.+++...|..+.++.+++.++.+..
T Consensus       207 ~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         207 FYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999988876543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=3.5e-16  Score=114.97  Aligned_cols=131  Identities=15%  Similarity=0.183  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH
Q psy3701         183 IHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK  262 (342)
Q Consensus       183 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (342)
                      ....|..++..|+|++|+..|+++++..+.....    ...                .......+....++.++|.++.+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~----~~~----------------~~~~~~~~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA----AED----------------ADGAKLQPVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH----SCH----------------HHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh----hhh----------------HHHHHhChhhHHHHHHHHHHHHh
Confidence            3566788888888888888888888765544100    000                00001122235788999999999


Q ss_pred             hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhhh
Q psy3701         263 LKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLIE  333 (342)
Q Consensus       263 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  333 (342)
                      +|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+...+..+...+..
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.66  E-value=5.9e-15  Score=108.05  Aligned_cols=132  Identities=17%  Similarity=0.174  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      ...+...|..++..|+|++|+..|++++...+.......     ..        ...        ..+....++.++|.+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~-----~~--------~~~--------~~~~~~~~~~Nla~~   73 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE-----KE--------SKA--------SESFLLAAFLNLAMC   73 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-----HH--------HHH--------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch-----hh--------hhh--------cchhHHHHHHhHHHH
Confidence            344677899999999999999999999987765530000     00        000        000114578899999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHHHHhh
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQLI  332 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  332 (342)
                      |..+|++++|+..++++++++|++..+++.+|.++..+|++++|+..|+++++++|+++.+...++.+.....
T Consensus        74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998888765543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.66  E-value=4e-14  Score=111.99  Aligned_cols=225  Identities=18%  Similarity=0.166  Sum_probs=178.2

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChHHHHHHHHHHhhc
Q psy3701          32 SALLLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYL----IGRSDPARRFLGKATSL  107 (342)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~  107 (342)
                      ...++.+|..+...+++++|+.+|+++.              +..++.+++.+|.+|..    ..++..|..+++++...
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa--------------~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKAC--------------DLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------HCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence            3467789999999999999999999963              34688999999999997    66899999999998765


Q ss_pred             CCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh----hCCHHHHHHHHHHHHhhCCCC
Q psy3701         108 DKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL----TNNARLASKFFDLALSIAHED  179 (342)
Q Consensus       108 ~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~  179 (342)
                      .  ++.+...+|.++..    ..+.+.|...++++....+  ..+...++..+..    ......+...+.+...  +.+
T Consensus        68 ~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~  141 (265)
T d1ouva_          68 N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LND  141 (265)
T ss_dssp             T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTC
T ss_pred             c--ccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccc
Confidence            4  67778888887765    4678999999999987654  4555666666554    3457777777777654  567


Q ss_pred             hHHHHHHHHHHHHh----cChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHH
Q psy3701         180 PFVIHEMGVIAYQN----HNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNN  255 (342)
Q Consensus       180 ~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (342)
                      ...+..+|.++...    .+...+..+++.+.+.  .+                                    +.+.++
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~------------------------------------~~A~~~  183 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KD------------------------------------SPGCFN  183 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC------------------------------------HHHHHH
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhccccc--cc------------------------------------cccccc
Confidence            88899999999873    4555667777766543  23                                    478899


Q ss_pred             HHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH----hCChHHHHHHHHHHHhcccC
Q psy3701         256 LGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL----TGDLDSAVNYFHKTMALKRD  316 (342)
Q Consensus       256 l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~  316 (342)
                      +|.++..    .+++++|+.+|+++.+.  +++.+++++|.+|..    ..++++|.++|+++....+.
T Consensus       184 lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         184 AGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             hhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            9999987    67899999999999887  468899999999986    44899999999999887543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=1.4e-15  Score=111.75  Aligned_cols=124  Identities=15%  Similarity=-0.007  Sum_probs=67.6

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCC
Q psy3701          34 LLLLKGRVYEALENRALAADCYKGALL----ADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDK  109 (342)
Q Consensus        34 ~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  109 (342)
                      .+...|..+...|+|++|+..|++++.    .............+|....++.++|.++...|++++|+..++++++++|
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  108 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  108 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence            345679999999999999999999751    1111111112223344444555555555555555555555555555555


Q ss_pred             CcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701         110 LFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus       110 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      +++.+|+.+|.++..+|++++|+..|+++++++|++..+...++.+..
T Consensus       109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1         109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            555555555555555555555555555555555554444444444433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.65  E-value=5.8e-16  Score=105.14  Aligned_cols=92  Identities=14%  Similarity=-0.040  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhC
Q psy3701          81 WYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTN  160 (342)
Q Consensus        81 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  160 (342)
                      ++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.++...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHH
Q psy3701         161 NARLASKFFDLA  172 (342)
Q Consensus       161 ~~~~A~~~~~~~  172 (342)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            555555555554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.65  E-value=1.2e-15  Score=103.63  Aligned_cols=94  Identities=15%  Similarity=0.108  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHH
Q psy3701         182 VIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNR  261 (342)
Q Consensus       182 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (342)
                      .++.+|.++...|++++|+..|++++..+|++                                    +.+|..+|.++.
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------------~~a~~~lg~~~~   61 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER------------------------------------EEAWRSLGLTQA   61 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------------------------------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc------------------------------------chhhhhhhhhhh
Confidence            35788999999999999999999999999998                                    689999999999


Q ss_pred             HhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy3701         262 KLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTM  311 (342)
Q Consensus       262 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  311 (342)
                      ..|++++|+..|+++++++|+++.++..+|.++...|++++|++.+++.+
T Consensus        62 ~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          62 ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.7e-16  Score=105.13  Aligned_cols=111  Identities=7%  Similarity=-0.065  Sum_probs=95.5

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh---hccHHHHHHHHHHHhccCCCC--chHHHHHHHHHh
Q psy3701          83 AVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV---ENEHDQAMAAYFNAFNLFKGC--HLPALYVGLECG  157 (342)
Q Consensus        83 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~  157 (342)
                      .++..+...+++++|.+.|++++..+|.++.+++++|.++..   .+++++|+..+++++..+|..  ..+++.+|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            466778888999999999999999999999999999999976   456678999999999988764  347889999999


Q ss_pred             hhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q psy3701         158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQN  193 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  193 (342)
                      ..|++++|+++|+++++++|++..+...++.+..+.
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999888887766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.64  E-value=4e-15  Score=107.05  Aligned_cols=118  Identities=10%  Similarity=-0.013  Sum_probs=100.1

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc----------------HHHHHHhhhHHHhhccHHHHHHHHHHHhc
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF----------------LPAWLMYGHSFAVENEHDQAMAAYFNAFN  140 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~  140 (342)
                      .+..+...|..++..|+|.+|+..|++++...+..                ...+.++|.++..+|++++|+..++++++
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            35567788999999999999999999999875532                13567789999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhc
Q psy3701         141 LFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNH  194 (342)
Q Consensus       141 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (342)
                      ++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+..+.+
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888888877765543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.63  E-value=8.1e-15  Score=107.29  Aligned_cols=136  Identities=16%  Similarity=0.093  Sum_probs=117.2

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCc---------------HHHHHHhhhHHHhhccHHHHHHHHHHHhcc
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLF---------------LPAWLMYGHSFAVENEHDQAMAAYFNAFNL  141 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  141 (342)
                      .+..+...|..++..|++.+|+..|++++...|..               ..++.++|.++..+|++++|+..+++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            35678889999999999999999999999754332               245778999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhH-HHHHHHHHHHhhhh
Q psy3701         142 FKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTV-AENCFMEALSKVKQ  212 (342)
Q Consensus       142 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~~~  212 (342)
                      +|.+..+++.+|.++..+|++++|+..|++++.++|+++.+...++.+....+.+.+ ..+.|.+.++..++
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~~~~  165 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAE  165 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999887776644 45666666655444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.9e-15  Score=102.36  Aligned_cols=64  Identities=13%  Similarity=0.142  Sum_probs=37.0

Q ss_pred             HHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhc
Q psy3701         150 LYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       150 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  213 (342)
                      ..+|..+...|++++|+.+|+++++++|+++.++.++|.++..+|+|++|+..++++++++|.+
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence            3455555555555555555555555555555555555555555555555555555555555555

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.61  E-value=4.4e-15  Score=105.58  Aligned_cols=106  Identities=12%  Similarity=0.031  Sum_probs=75.9

Q ss_pred             hhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----------hcChhHHHHHHHHHHHhhhhcCccccccchhhHH
Q psy3701         157 GLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ----------NHNYTVAENCFMEALSKVKQLGGEIIADKWEPLL  226 (342)
Q Consensus       157 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  226 (342)
                      .+.+.+++|+..|+++++++|+++.++..+|.++..          .+.+++|+..|+++++++|++             
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-------------   74 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-------------   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-------------
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-------------
Confidence            344455555555555555556566666666555553          345688999999999999999             


Q ss_pred             HHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Q psy3701         227 NNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLKK-----------YEEALEFHKQALVVAPMKASTFCCIGYIQA  295 (342)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  295 (342)
                                             +.+++++|.+|..+|+           +++|+++|+++++++|++...+..++.+..
T Consensus        75 -----------------------~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k  131 (145)
T d1zu2a1          75 -----------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  131 (145)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             -----------------------hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence                                   6899999999988764           577777888888888877777777776654


Q ss_pred             HhC
Q psy3701         296 LTG  298 (342)
Q Consensus       296 ~~g  298 (342)
                      ..+
T Consensus       132 a~~  134 (145)
T d1zu2a1         132 APQ  134 (145)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-14  Score=101.31  Aligned_cols=107  Identities=13%  Similarity=0.099  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHh
Q psy3701          78 AIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECG  157 (342)
Q Consensus        78 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  157 (342)
                      +..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++++|.+...+..++.+  
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~--   81 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA--   81 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH--
Confidence            445677899999999999999999999999999999999999999999999999999999998888776655544433  


Q ss_pred             hhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhh
Q psy3701         158 LTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVK  211 (342)
Q Consensus       158 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  211 (342)
                                               +..+|.++...+++++|+.+|++++..++
T Consensus        82 -------------------------~~~lg~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          82 -------------------------YARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             -------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             -------------------------HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence                                     23555555555666666666666655544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=2.9e-15  Score=106.51  Aligned_cols=108  Identities=13%  Similarity=0.055  Sum_probs=69.9

Q ss_pred             HHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhh----------ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh
Q psy3701          89 YLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVE----------NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL  158 (342)
Q Consensus        89 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  158 (342)
                      .+.+.+++|+..|+++++++|+++.+++.+|.++...          +.+++|+..|+++++++|+++.+++.+|.+|..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~   87 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   87 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence            3444556666666666666666666666666555532          334566666666666666666666666666655


Q ss_pred             hC-----------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701         159 TN-----------NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY  196 (342)
Q Consensus       159 ~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (342)
                      .|           .+++|++.|++++.++|++...+..++.+....+.+
T Consensus        88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            44           468888889999999998888887777775443333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.52  E-value=8.9e-12  Score=98.19  Aligned_cols=206  Identities=16%  Similarity=0.108  Sum_probs=165.1

Q ss_pred             cHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHh----hccHHHHHHHHHHHhccCCCCchHHHHH
Q psy3701          77 SAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAV----ENEHDQAMAAYFNAFNLFKGCHLPALYV  152 (342)
Q Consensus        77 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l  152 (342)
                      ||.+++.+|..++..+++++|+++|+++.+.  .++.+++.||.+|..    ..++..|...++.+....  ++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            5789999999999999999999999999875  578999999999987    678999999999987654  56777778


Q ss_pred             HHHHhh----hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhcCccccccchhh
Q psy3701         153 GLECGL----TNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQLGGEIIADKWEP  224 (342)
Q Consensus       153 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  224 (342)
                      |.++..    .++.+.|...++++....  .......++..+..    ......|...+.+.....  +           
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~-----------  141 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D-----------  141 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C-----------
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc--c-----------
Confidence            877664    468899999999988754  45666677777665    334555666665544422  2           


Q ss_pred             HHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHH----
Q psy3701         225 LLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRK----LKKYEEALEFHKQALVVAPMKASTFCCIGYIQAL----  296 (342)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----  296 (342)
                                               ...+..+|..+..    ..+...+..+++.+.+  +.++.+++.+|.++..    
T Consensus       142 -------------------------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~  194 (265)
T d1ouva_         142 -------------------------GDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGA  194 (265)
T ss_dssp             -------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSS
T ss_pred             -------------------------cchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCccc
Confidence                                     4678889999886    4567788888888875  5688999999999987    


Q ss_pred             hCChHHHHHHHHHHHhcccCchhHHhHHHHHHHH
Q psy3701         297 TGDLDSAVNYFHKTMALKRDDSFATTMLSYVIEQ  330 (342)
Q Consensus       297 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  330 (342)
                      ..++++|+.+|+++.+.  +++.+.+.|+.++..
T Consensus       195 ~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~  226 (265)
T d1ouva_         195 TKNFKEALARYSKACEL--ENGGGCFNLGAMQYN  226 (265)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHc
Confidence            67899999999999887  578899999999864

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.46  E-value=2.4e-13  Score=98.03  Aligned_cols=113  Identities=17%  Similarity=0.042  Sum_probs=89.6

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHHHHHhh
Q psy3701         185 EMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHVNRKLK  264 (342)
Q Consensus       185 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  264 (342)
                      ..|..++..|+|++|+..|++++++.|..++......                        .+..+.++.++|.+|..+|
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~------------------------~~~~a~~~~nlg~~~~~lg   69 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH------------------------AGFDAFCHAGLAEALAGLR   69 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCH------------------------HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhccc------------------------chhHHHHHHHHHHHHHHcC
Confidence            3478888999999999999999999988751110000                        0011468899999999999


Q ss_pred             hHHHHHHHHHHHHhhCCC-----------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHH
Q psy3701         265 KYEEALEFHKQALVVAPM-----------KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFAT  321 (342)
Q Consensus       265 ~~~~A~~~~~~al~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  321 (342)
                      ++++|+..+++++.+.|.           ...+++++|.++..+|++++|+..|++++++.|+.....
T Consensus        70 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~  137 (156)
T d2hr2a1          70 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  137 (156)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             ccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence            999999999999986542           234688999999999999999999999999987665443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.5e-13  Score=86.70  Aligned_cols=89  Identities=19%  Similarity=0.216  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNLGHV  259 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (342)
                      ++-++.+|.+++..|+|++|+.+|++++++.|..+                             ...+..+.++.++|.+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-----------------------------~~~~~~~~~l~~Lg~~   55 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-----------------------------ISTIDKVSVLDYLSYA   55 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----------------------------CCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-----------------------------ccCccHHHHHHHHhhH
Confidence            45678999999999999999999999999988763                             1123335788999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHh
Q psy3701         260 NRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALT  297 (342)
Q Consensus       260 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  297 (342)
                      +.+.|++++|+..|+++++++|+++.++.+++.+...+
T Consensus        56 ~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          56 VYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999887765543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.7e-13  Score=87.40  Aligned_cols=83  Identities=24%  Similarity=0.202  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-------chHHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHh
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPM-------KASTFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATT  322 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  322 (342)
                      ++-++.+|.++.+.|+|++|+.+|++++++.|.       ...++.++|.++.+.|++++|+.+|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            467889999999999999999999999987553       3578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy3701         323 MLSYVIEQLI  332 (342)
Q Consensus       323 ~l~~~~~~~~  332 (342)
                      +++.+...+.
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9988766543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.37  E-value=1.6e-12  Score=93.57  Aligned_cols=114  Identities=11%  Similarity=-0.028  Sum_probs=69.1

Q ss_pred             HHHHHHH--HHHHHHhCChHHHHHHHHHHhhcCCCcH------------HHHHHhhhHHHhhccHHHHHHHHHHHhccCC
Q psy3701          78 AIAWYAV--GCYYYLIGRSDPARRFLGKATSLDKLFL------------PAWLMYGHSFAVENEHDQAMAAYFNAFNLFK  143 (342)
Q Consensus        78 ~~~~~~l--~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  143 (342)
                      ..++..+  |..++..|+|++|+..|++++++.|+.+            .+|.++|.++..+|++++|+..+++++.+.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3344444  6666777777777777777777666543            2344444444444444444444444444332


Q ss_pred             CCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcC
Q psy3701         144 GCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLG  214 (342)
Q Consensus       144 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  214 (342)
                      .........                       .|....+++++|.++..+|++++|+..|++++++.|...
T Consensus        87 ~~~~~~~~~-----------------------~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          87 RRGELNQDE-----------------------GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHCCTTSTH-----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccc-----------------------cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            110000000                       001234678999999999999999999999999999874

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.31  E-value=6.2e-12  Score=98.03  Aligned_cols=132  Identities=10%  Similarity=0.080  Sum_probs=104.8

Q ss_pred             HHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhH
Q psy3701         154 LECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKA  233 (342)
Q Consensus       154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
                      .-....|++++|+..++++++.+|++...+..+|.++...|++++|+..|+++++++|+.                    
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~--------------------   63 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY--------------------   63 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG--------------------
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc--------------------
Confidence            345677899999999999999999999999999999999999999999999999999888                    


Q ss_pred             HHHHHHhchhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         234 EDKVKQLGGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALV-VAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                                      ...+..++.++...+..+++...+.+... ..|.....+...+.++...|++++|...++++.+
T Consensus        64 ----------------~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          64 ----------------LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                            46777888887777777666554443322 2345556677778888889999999999999999


Q ss_pred             cccCchhHH
Q psy3701         313 LKRDDSFAT  321 (342)
Q Consensus       313 ~~p~~~~~~  321 (342)
                      ..|+.+..+
T Consensus       128 ~~p~~~~~~  136 (264)
T d1zbpa1         128 LRQEKGFLA  136 (264)
T ss_dssp             HCCCCCEEE
T ss_pred             cCCCCCccc
Confidence            888877544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.24  E-value=1.2e-11  Score=96.40  Aligned_cols=82  Identities=13%  Similarity=0.024  Sum_probs=53.3

Q ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhh
Q psy3701          40 RVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYG  119 (342)
Q Consensus        40 ~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  119 (342)
                      +-.+..|++++|+..|+++            ++.+|+++.++..+|.++...|++++|+..++++++++|++..++..++
T Consensus         4 ~~aL~~G~l~eAl~~l~~a------------l~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~   71 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEA------------IKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR   71 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHH------------HHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHH------------HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            3445556666666666664            4667777777777777777777777777777777777777666666666


Q ss_pred             hHHHhhccHHHHHH
Q psy3701         120 HSFAVENEHDQAMA  133 (342)
Q Consensus       120 ~~~~~~g~~~~A~~  133 (342)
                      .++...+..+++..
T Consensus        72 ~ll~a~~~~~~a~~   85 (264)
T d1zbpa1          72 HLVKAAQARKDFAQ   85 (264)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHhccccHHHHH
Confidence            66665555554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=5.9e-10  Score=81.38  Aligned_cols=61  Identities=5%  Similarity=-0.008  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy3701         250 EPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKT  310 (342)
Q Consensus       250 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  310 (342)
                      ..++..++.++...|++++|+..++++++.+|.+..+|..++.++...|++.+|+..|+++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4567777888888888888888888888888888888888888888888888888877776

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.07  E-value=3e-10  Score=82.96  Aligned_cols=123  Identities=12%  Similarity=-0.103  Sum_probs=96.7

Q ss_pred             CcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHH
Q psy3701          76 DSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLE  155 (342)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  155 (342)
                      ...+.+...|......|++++|+..|.+++.+.+.........+.       +     .......+.+....++..++.+
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~-------w-----~~~~r~~l~~~~~~a~~~la~~   76 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ-------F-----VEPFATALVEDKVLAHTAKAEA   76 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTST-------T-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchH-------H-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            346778889999999999999999999999998765432221111       0     0111122223334677889999


Q ss_pred             HhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhh
Q psy3701         156 CGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKV  210 (342)
Q Consensus       156 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  210 (342)
                      +...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++...-
T Consensus        77 ~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          77 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.4e-08  Score=67.23  Aligned_cols=85  Identities=12%  Similarity=0.041  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHh---hhHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHHhCChHHHHHHHHHHHhcccCchhHHhHHH
Q psy3701         250 EPLLNNLGHVNRKL---KKYEEALEFHKQALVVAPMKA-STFCCIGYIQALTGDLDSAVNYFHKTMALKRDDSFATTMLS  325 (342)
Q Consensus       250 ~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  325 (342)
                      ..+.+++|+++.+.   .+.++++..++++++.+|.+. +.++.+|..|.++|++++|..+++++++++|++..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            57889999999854   667899999999999998764 89999999999999999999999999999999999988887


Q ss_pred             HHHHHhhhc
Q psy3701         326 YVIEQLIEE  334 (342)
Q Consensus       326 ~~~~~~~~~  334 (342)
                      .+-.++..+
T Consensus       115 ~Ie~~~~kd  123 (124)
T d2pqrb1         115 MVEDKIQKE  123 (124)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            777666543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=3.7e-07  Score=60.29  Aligned_cols=80  Identities=8%  Similarity=-0.039  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHHhc---ChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHhchhccCCCChHHHHHH
Q psy3701         180 PFVIHEMGVIAYQNH---NYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQLGGEIIADKWEPLLNNL  256 (342)
Q Consensus       180 ~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (342)
                      ....+.+|.++.+..   +.++++..++.+++.+|...                                   .+.++.+
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~-----------------------------------rd~lY~L   79 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-----------------------------------RECLYYL   79 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-----------------------------------HHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH-----------------------------------HHHHHHH
Confidence            667788888887654   45688888988888777653                                   4688889


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Q psy3701         257 GHVNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQ  294 (342)
Q Consensus       257 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  294 (342)
                      |..|.++|+|++|..+++++++++|++..+....-.+.
T Consensus        80 av~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          80 TIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            99999999999999999999999998887766554443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.56  E-value=8.4e-07  Score=60.97  Aligned_cols=114  Identities=16%  Similarity=0.087  Sum_probs=89.7

Q ss_pred             CChHHHHHHHHHHhhcCCCcHHHHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhh----hCCHHHHHH
Q psy3701          92 GRSDPARRFLGKATSLDKLFLPAWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGL----TNNARLASK  167 (342)
Q Consensus        92 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~  167 (342)
                      .|+++|+.+|+++.+..  ++.+.+.++.  ....+.++|+.+++++.+.  +++.+.+.+|.+|..    ..++++|++
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            46788999999988764  4555666654  3556888999999998775  567888889988875    457899999


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHH----hcChhHHHHHHHHHHHhhhhc
Q psy3701         168 FFDLALSIAHEDPFVIHEMGVIAYQ----NHNYTVAENCFMEALSKVKQL  213 (342)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~  213 (342)
                      +|+++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+.....
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~  128 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED  128 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHH
Confidence            99998765  578889999999887    468899999999998765443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.55  E-value=1.6e-06  Score=59.57  Aligned_cols=77  Identities=13%  Similarity=0.094  Sum_probs=40.3

Q ss_pred             ccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hcChhHHHH
Q psy3701         126 NEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQ----NHNYTVAEN  201 (342)
Q Consensus       126 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~  201 (342)
                      .++++|+.+|+++.+..  ++.+.+.++.  ....+.++|+++++++.+.  +++.+.+.+|.+|..    ..++++|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            35666777777766543  3344444432  2334555666666555442  355555555555543    234455555


Q ss_pred             HHHHHHH
Q psy3701         202 CFMEALS  208 (342)
Q Consensus       202 ~~~~al~  208 (342)
                      +|+++.+
T Consensus        81 ~~~~aa~   87 (133)
T d1klxa_          81 YYSKACG   87 (133)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhhc
Confidence            5555544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.29  E-value=0.025  Score=44.38  Aligned_cols=138  Identities=9%  Similarity=-0.080  Sum_probs=85.6

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHH
Q psy3701          37 LKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWL  116 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  116 (342)
                      ..|......|.|+.|..+|...                ++    +..+..++...++++.|.+.+.++     +++..|.
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~----------------~d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k   73 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNV----------------SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWK   73 (336)
T ss_dssp             ----------CTTTHHHHHHHT----------------TC----HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhC----------------CC----HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHH
Confidence            4677788888888888888873                22    334456777888888888888765     4567788


Q ss_pred             HhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcCh
Q psy3701         117 MYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNY  196 (342)
Q Consensus       117 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (342)
                      ..........+..-+... ....   ...+.-...+...+...|.+++.+.+++.++...+.+...+..++.++.+.+ .
T Consensus        74 ~~~~~l~~~~e~~la~i~-~~~~---~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          74 EVCFACVDGKEFRLAQMC-GLHI---VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHT-TTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHHHhCcHHHHHHHH-HHHh---hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-h
Confidence            777777776665443221 1111   1233344456677788889999999999888888888888888888776643 3


Q ss_pred             hHHHHHHH
Q psy3701         197 TVAENCFM  204 (342)
Q Consensus       197 ~~A~~~~~  204 (342)
                      ++-.+.++
T Consensus       149 ~kl~e~l~  156 (336)
T d1b89a_         149 QKMREHLE  156 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.085  Score=43.28  Aligned_cols=54  Identities=11%  Similarity=-0.042  Sum_probs=42.2

Q ss_pred             HHHHhhhHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy3701         259 VNRKLKKYEEALEFHKQALVVAPMKASTFCCIGYIQALTGDLDSAVNYFHKTMA  312 (342)
Q Consensus       259 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  312 (342)
                      .....+++..+...+...-......+...+.+|..+...|+.++|..+|..+..
T Consensus       294 ~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            345678999888888765332233456779999999999999999999999875

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.89  E-value=0.61  Score=36.20  Aligned_cols=154  Identities=10%  Similarity=-0.016  Sum_probs=79.4

Q ss_pred             HHHHhhccHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHhhcCCCcHHHHHHh
Q psy3701          40 RVYEALENRALAADCYKGAL-LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKATSLDKLFLPAWLMY  118 (342)
Q Consensus        40 ~~~~~~~~~~~A~~~~~~~~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  118 (342)
                      ..|...+++++++.++-+.. +..+...+.+.     +++.+|......+.......-+.. .......   +++-....
T Consensus        35 ~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-~~~~~~~---~~d~l~~~  105 (336)
T d1b89a_          35 LLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-CGLHIVV---HADELEEL  105 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-TTTTTTT---CHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-HHHHhhc---CHHHHHHH
Confidence            34445555555555543321 33333333322     355677777666666655443321 1111112   23334455


Q ss_pred             hhHHHhhccHHHHHHHHHHHhccCCCCchHHHHHHHHHhhhCCHHHHHHHHHHH-HhhCCC-------ChHHHHHHHHHH
Q psy3701         119 GHSFAVENEHDQAMAAYFNAFNLFKGCHLPALYVGLECGLTNNARLASKFFDLA-LSIAHE-------DPFVIHEMGVIA  190 (342)
Q Consensus       119 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~-------~~~~~~~l~~~~  190 (342)
                      ...+...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-.+.++.. ...++.       ....|-.+..+|
T Consensus       106 v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly  184 (336)
T d1b89a_         106 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY  184 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHH
Confidence            566667777777777777777666666666666666665543 33333333332 111110       111245666777


Q ss_pred             HHhcChhHHHHHH
Q psy3701         191 YQNHNYTVAENCF  203 (342)
Q Consensus       191 ~~~~~~~~A~~~~  203 (342)
                      .+.|++++|+...
T Consensus       185 ~~~~~~~~A~~~~  197 (336)
T d1b89a_         185 DKYEEYDNAIITM  197 (336)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HhcCCHHHHHHHH
Confidence            7777777776554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=1.2  Score=36.13  Aligned_cols=252  Identities=8%  Similarity=-0.126  Sum_probs=128.3

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChHHHHHHHHHHh-----
Q psy3701          37 LKGRVYEALENRALAADCYKGAL------LADLFKLAHELVDLYPDSAIAWYAVGCYYYLIGRSDPARRFLGKAT-----  105 (342)
Q Consensus        37 ~~g~~~~~~~~~~~A~~~~~~~~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-----  105 (342)
                      ..+.+....|+-..|.......-      .+.+-.++........-.+..+..........|++..|.......-     
T Consensus       107 ~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~  186 (450)
T d1qsaa1         107 NYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQT  186 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHH
Confidence            44556666777777776555432      1344444444444444445555556666666777766665544310     


Q ss_pred             --------hcCCCcH-----------H--HHHHhhhHHHhhccHHHHHHHHHHHhccCCCCchHHHH----HHHHHhhhC
Q psy3701         106 --------SLDKLFL-----------P--AWLMYGHSFAVENEHDQAMAAYFNAFNLFKGCHLPALY----VGLECGLTN  160 (342)
Q Consensus       106 --------~~~~~~~-----------~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----l~~~~~~~~  160 (342)
                              ..+|...           .  .....+..-....+.+.|...+.......+.....+..    ++......+
T Consensus       187 ~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  266 (450)
T d1qsaa1         187 IASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGND  266 (450)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTT
T ss_pred             HHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcC
Confidence                    0111111           0  01122222223344555555555544433332222222    122222334


Q ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhcCccccccchhhHHHHhhhhHHHHHHHh
Q psy3701         161 NARLASKFFDLALSIAHEDPFVIHEMGVIAYQNHNYTVAENCFMEALSKVKQLGGEIIADKWEPLLNNLGHKAEDKVKQL  240 (342)
Q Consensus       161 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (342)
                      ..+.+...+........+.......++ .....+++..+...+...- ..+.                            
T Consensus       267 ~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~-~~~~----------------------------  316 (450)
T d1qsaa1         267 VTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLP-MEAK----------------------------  316 (450)
T ss_dssp             CCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSC-TTGG----------------------------
T ss_pred             chHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcC-cccc----------------------------
Confidence            445555555544433332222222222 2344455555555544321 1111                            


Q ss_pred             chhccCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-----------------------------hHHHHHHH
Q psy3701         241 GGEIIADKWEPLLNNLGHVNRKLKKYEEALEFHKQALVVAPMK-----------------------------ASTFCCIG  291 (342)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------------~~~~~~l~  291 (342)
                             ......+-+|..+...|+.++|...|..+... ++.                             ...-...+
T Consensus       317 -------~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra  388 (450)
T d1qsaa1         317 -------EKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARV  388 (450)
T ss_dssp             -------GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHH
T ss_pred             -------cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHH
Confidence                   12567788999999999999999999987642 110                             01123457


Q ss_pred             HHHHHhCChHHHHHHHHHHHhcccCchhHHhHHHHHH
Q psy3701         292 YIQALTGDLDSAVNYFHKTMALKRDDSFATTMLSYVI  328 (342)
Q Consensus       292 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  328 (342)
                      ..+...|+...|...+..++...  ++.-...++.+.
T Consensus       389 ~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA  423 (450)
T d1qsaa1         389 RELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYA  423 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence            77889999999999998887543  233334444433

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.15  E-value=1.7  Score=25.13  Aligned_cols=43  Identities=19%  Similarity=0.125  Sum_probs=31.1

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q psy3701          35 LLLKGRVYEALENRALAADCYKGALLADLFKLAHELVDLYPDSAIAWYA   83 (342)
Q Consensus        35 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~   83 (342)
                      +--.++.+...|.|++||++++++.     ..+.++++. +.+..+...
T Consensus        11 ~~RrAer~l~~~rydeAIech~kA~-----~yl~eA~kl-t~s~~~l~S   53 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKAT-----TYLSEAMKL-TESEQAHLS   53 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHTT-CCCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHhC-CCcHHHHHH
Confidence            3347888999999999999999964     555666665 555555443