Psyllid ID: psy3720

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRGTIMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRDDIVYNQSMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLNFSSEEFEMSVLKRRSIS
Secondary Structure (PSIPRED)
cccccccccccccccccccEEccEEEEEccEEEEEEEHHHHHEEEEEEccccccEEEccccccccccccccccccccccccccEEEEEcccEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEccccccccHHcccHHHHcccccccccccccccccccccHHHHccEEEEEccHHHHcEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEcHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcEEccccccccccccccccccHccHHEEEcHHHEEEEEEEEEEEEEEEEEcccccccccccccEEEEcccccccccHcHHHHHHHHccccccccccccccccccccccHEEEEEEEcHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mppfktsdfspylpwvpgwidwnavvpiGATVIVVFVGLLVVCFAVsrrkgdgqtrlrgtimppfktsdfspylpwvpgwidwnavvpiGATVIVVFVGLLVVCFAVsrrkgdgqtrlrddivynqsmvggmntvdkrhineelgyiappnrklppvpgsnyntcdrIKRVLNFSSEEFEMSVLKRRSIS
Flexible Loop (DISEMBL)
mppfktsdfspylPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVsrrkgdgqtrlrgtimppfktsdfspYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVsrrkgdgqtrlrddivynqsmvggmntvDKRHINEELGyiappnrklppvpgsnynTCDRIKRVLnfsseefemsvlkrrsis
Low Complexity Region (SEG)
MPPFKTSDFSPYLPWVPGWIDWNAVVPIGATvivvfvgllvvcfavSRRKGDGQTRLRGTIMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATvivvfvgllvvcfavSRRKGDGQTRLRDDIVYNQSMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLNFSSEEFEMSVLKRRSIS
Disordered region (IsUnstruct)
********FSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRGTIMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRDDIVYNQSMVGGMNTVDKRHINEELGYIA************NYNTCDRIKRVLNF****************
Disordered Region (DISOPRED)
****K*SDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRK*********TIMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAV**************IVYNQSM**********HINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLNFSSEEFEMSVLKRR***
Disordered Region (DISEMBL)
********FSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRGTIMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRDDIVYNQSMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLNFSSEEFE**********
Disordered Region (DISPRO)
***FKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRGTIMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRDDIVYNQSMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLNFSSEEFEMSVLK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRGTIMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRDDIVYNQSMVGGMNTVDKRHINEELGYIAPPNRKLPPVPGSNYNTCDRIKRVLNFSSEEFEMSVLKRRSIS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
328698595	3525	PREDICTED: hemicentin-2-like [Acyrthosip	0.763	0.041	0.567	1e-36
350419622	1975	PREDICTED: Down syndrome cell adhesion m	0.663	0.063	0.577	7e-30
332021243	2308	Down syndrome cell adhesion molecule-lik	0.631	0.051	0.6	4e-26
307166758	3255	Down syndrome cell adhesion molecule-lik	0.631	0.036	0.592	1e-25
307206811	2625	Down syndrome cell adhesion molecule-lik	0.621	0.044	0.598	7e-25
357621243	510	dscam [Danaus plexippus]	0.636	0.237	0.453	7e-21
195581170	2908	GD10266 [Drosophila simulans] gi|1941924	0.494	0.032	0.623	2e-20
116007644	2032	down syndrome cell adhesion molecule, is	0.494	0.046	0.623	2e-20
116007618	2030	down syndrome cell adhesion molecule, is	0.494	0.046	0.623	2e-20
116007598	2031	down syndrome cell adhesion molecule, is	0.494	0.046	0.623	2e-20

>gi|328698595|ref|XP_003240678.1| PREDICTED: hemicentin-2-like [Acyrthosiphon pisum]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 116/155 (74%), Gaps = 10/155 (6%)

Query: 21   DWNAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRGTIMPPFK-TSDFSPYLPWVPG 79
            + N V+P+ + ++V+ V ++ +C+   +++G     ++GTI PP +  +    YLPW+P 
Sbjct: 3101 NLNLVIPVTSALLVIIVAIIFLCYL--KKRG---VEIKGTIAPPAQDVTSIYTYLPWIPK 3155

Query: 80   WIDWNAVVPIGATVIVVFVGLLVVCFAVSRR-KGDGQTRLRDDI-VYNQSMVGGMNTVDK 137
            WID N VVP  AT+IV+ VG++VVCFA SRR   +GQTRLRDD+ VYNQSM+ G NT+DK
Sbjct: 3156 WIDLNVVVPTAATIIVIIVGIIVVCFAWSRRVHENGQTRLRDDMTVYNQSMIMGGNTLDK 3215

Query: 138  RH--INEELGYIAPPNRKLPPVPGSNYNTCDRIKR 170
            RH   N+ELGYIAPPNRKLPPVPGSNYNTCDRIKR
Sbjct: 3216 RHADFNDELGYIAPPNRKLPPVPGSNYNTCDRIKR 3250

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419622|ref|XP_003492247.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Bombus impatiens]

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/135 (57%), Positives = 98/135 (72%), Gaps = 9/135 (6%)

Query: 44   FAVSRRKGDGQTRLRGTIMPPFKT-----SDFSPYLPWVPGWIDWNAVVPIGATVIVVFV 98
            FAV+  +    T   GTI PP +      +D   Y PW+P W+D N VVP+GAT++V+ V
Sbjct: 1564 FAVAEYEFATLTVTGGTIAPPVRNNGNDNTDVRRYFPWLPSWLDVNVVVPVGATIVVIIV 1623

Query: 99   GLLVVCFAVSRR-KGDGQTRLRDDIVYNQSMVGGMNTVDKRH--INEELGYIAPPNRKLP 155
            G++V+C A+SRR +G  QTRLRDD+VY Q+ VGG  T+DKR   + +ELGYIAPPNRKLP
Sbjct: 1624 GIVVICVALSRRTRGPEQTRLRDDVVYQQTGVGGA-TLDKRRPDLRDELGYIAPPNRKLP 1682

Query: 156  PVPGSNYNTCDRIKR 170
            PVPGSNYNTCDRIKR
Sbjct: 1683 PVPGSNYNTCDRIKR 1697

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021243|gb|EGI61628.1| Down syndrome cell adhesion molecule-like protein [Acromyrmex echinatior]

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 98/130 (75%), Gaps = 10/130 (7%)

Query: 50   KGDGQTRLRGTIMPPFK------TSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVV 103
            +G G +  +GTI PP +      T+D   Y PW+P W+D N VVP+GATV+V+ VG++V+
Sbjct: 1924 RGKGHSSDKGTIAPPIRNGGNDNTADVRRYFPWLPSWLDVNVVVPVGATVVVIIVGIVVI 1983

Query: 104  CFAVSRR-KGDGQTRLRDDIVYNQSMVGGMNTVDKRH--INEELGYIAPPNRKLPPVPGS 160
            C A+SRR +G  QTRLRDD+VY Q+ VGG  T+DKR   + +ELGYIAPPNRKLPPVPGS
Sbjct: 1984 CVALSRRTRGPEQTRLRDDVVYQQTGVGGA-TLDKRRSDLRDELGYIAPPNRKLPPVPGS 2042

Query: 161  NYNTCDRIKR 170
            NYNTCDRIKR
Sbjct: 2043 NYNTCDRIKR 2052

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166758|gb|EFN60720.1| Down syndrome cell adhesion molecule-like protein 1 [Camponotus floridanus]

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/130 (59%), Positives = 96/130 (73%), Gaps = 10/130 (7%)

Query: 50   KGDGQTRLRGTIMPPFKT------SDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVV 103
            +G G    +GTI PP +       +D   Y PW+P W+D N VVP+GATV+V+ VG++V+
Sbjct: 2846 RGKGHGSDKGTIAPPVRNGGNDNAADVRRYFPWLPSWLDVNVVVPVGATVVVIIVGIVVI 2905

Query: 104  CFAVSRR-KGDGQTRLRDDIVYNQSMVGGMNTVDKRH--INEELGYIAPPNRKLPPVPGS 160
            C A+SRR +G  QTRLRDD+VY Q+ VGG  T+DKR   + +ELGYIAPPNRKLPPVPGS
Sbjct: 2906 CVALSRRTRGPEQTRLRDDVVYQQTGVGGA-TLDKRRSDLRDELGYIAPPNRKLPPVPGS 2964

Query: 161  NYNTCDRIKR 170
            NYNTCDRIKR
Sbjct: 2965 NYNTCDRIKR 2974

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206811|gb|EFN84709.1| Down syndrome cell adhesion molecule-like protein 1 [Harpegnathos saltator]

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 97/132 (73%), Gaps = 14/132 (10%)

Query: 47   SRRKGDGQTRLRGTIMPPFKT-----SDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLL 101
            SR  GD     +GTI PP +      +D   Y PW+P W+D N VVP+GATV+V+ VG++
Sbjct: 2203 SRHSGD-----KGTIAPPVRNGGNDNTDVRRYFPWLPSWLDVNVVVPVGATVVVIIVGIV 2257

Query: 102  VVCFAVSRR-KGDGQTRLRDDIVYNQSMVGGMNTVDKRH--INEELGYIAPPNRKLPPVP 158
            V+C A+SRR +G  QTRLRDD+VY Q+ VGG  T+DKR   + +ELGYIAPPNRKLPPVP
Sbjct: 2258 VICVALSRRTRGPEQTRLRDDVVYQQTGVGGA-TLDKRRSDLRDELGYIAPPNRKLPPVP 2316

Query: 159  GSNYNTCDRIKR 170
            GSNYNTCDRIKR
Sbjct: 2317 GSNYNTCDRIKR 2328

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621243|gb|EHJ73141.1| dscam [Danaus plexippus]

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 78/128 (60%), Gaps = 7/128 (5%)

Query: 50  KGDGQTRLRGTIMPPFKTSDFSPYLPWVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSR 109
           +G      +GTI P    ++     PWV  W++   +VPI AT++V  VG++V+C  ++R
Sbjct: 108 RGARDHHHKGTIAPLPGNAEDKELPPWVKAWLEPEVLVPILATIVVFIVGMVVICLTLAR 167

Query: 110 RKGDGQTRLRD---DIVYNQSMVGGMN---TVDKRH-INEELGYIAPPNRKLPPVPGSNY 162
           R    + R +    D VYN S         T+DKR  + +ELGYIAPPNRKLPPVPGSNY
Sbjct: 168 RNTPHRLRGQKEYYDAVYNTSGAAMGGAGGTLDKRGGLRDELGYIAPPNRKLPPVPGSNY 227

Query: 163 NTCDRIKR 170
           NTCDR+KR
Sbjct: 228 NTCDRVKR 235

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195581170|ref|XP_002080407.1| GD10266 [Drosophila simulans] gi|194192416|gb|EDX05992.1| GD10266 [Drosophila simulans]

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 7/101 (6%)

Query: 76   WVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGD----GQTRLRDDIVYNQSMVGG 131
            W+P W+D N +VP+ ATV+VV VG+ VVC A+SRR+ D    GQ  +  D+VYNQ+M  G
Sbjct: 2535 WMPEWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTMGPG 2594

Query: 132  MNTVDKRH--INEELGYIAPPNRKLPPVPGSNYNTCDRIKR 170
              T+DKR   + +ELGYIAPPNRKLPPVPGSNYNTCDRIKR
Sbjct: 2595 A-TLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKR 2634

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007644|ref|NP_001036518.1| down syndrome cell adhesion molecule, isoform AG [Drosophila melanogaster] gi|113194623|gb|ABI31069.1| down syndrome cell adhesion molecule, isoform AG [Drosophila melanogaster]

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 7/101 (6%)

Query: 76   WVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGD----GQTRLRDDIVYNQSMVGG 131
            W+P W+D N +VP+ ATV+VV VG+ VVC A+SRR+ D    GQ  +  D+VYNQ+M  G
Sbjct: 1617 WMPEWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTMGPG 1676

Query: 132  MNTVDKRH--INEELGYIAPPNRKLPPVPGSNYNTCDRIKR 170
              T+DKR   + +ELGYIAPPNRKLPPVPGSNYNTCDRIKR
Sbjct: 1677 A-TLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKR 1716

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007618|ref|NP_001036505.1| down syndrome cell adhesion molecule, isoform AJ [Drosophila melanogaster] gi|113194610|gb|ABI31056.1| down syndrome cell adhesion molecule, isoform AJ [Drosophila melanogaster]

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 7/101 (6%)

Query: 76   WVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGD----GQTRLRDDIVYNQSMVGG 131
            W+P W+D N +VP+ ATV+VV VG+ VVC A+SRR+ D    GQ  +  D+VYNQ+M  G
Sbjct: 1615 WMPEWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTMGPG 1674

Query: 132  MNTVDKRH--INEELGYIAPPNRKLPPVPGSNYNTCDRIKR 170
              T+DKR   + +ELGYIAPPNRKLPPVPGSNYNTCDRIKR
Sbjct: 1675 A-TLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKR 1714

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007598|ref|NP_001036495.1| down syndrome cell adhesion molecule, isoform X [Drosophila melanogaster] gi|113194600|gb|ABI31046.1| down syndrome cell adhesion molecule, isoform X [Drosophila melanogaster]

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 7/101 (6%)

Query: 76   WVPGWIDWNAVVPIGATVIVVFVGLLVVCFAVSRRKGD----GQTRLRDDIVYNQSMVGG 131
            W+P W+D N +VP+ ATV+VV VG+ VVC A+SRR+ D    GQ  +  D+VYNQ+M  G
Sbjct: 1616 WMPEWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTMGPG 1675

Query: 132  MNTVDKRH--INEELGYIAPPNRKLPPVPGSNYNTCDRIKR 170
              T+DKR   + +ELGYIAPPNRKLPPVPGSNYNTCDRIKR
Sbjct: 1676 A-TLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKR 1715

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.505	0.047	0.538	1.4e-20

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 56/104 (53%), Positives = 67/104 (64%)

Query:    74 LP-WVPGWIDWNAVVPIGATXXXXXXXXXXXXXXXSRRKGD----GQTRLRDDIVYNQSM 128
             LP W+P W+D N +VP+ AT               SRR+ D    GQ  +  D+VYNQ+M
Sbjct:  1619 LPAWMPEWLDLNFMVPLIATVVVVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTM 1678

Query:   129 VGGMNTVDKRH--INEELGYIAPPNRKLPPVPGSNYNTCDRIKR 170
               G  T+DKR   + +ELGYIAPPNRKLPPVPGSNYNTCDRIKR
Sbjct:  1679 GPGA-TLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKR 1721

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	88.7
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	88.01
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	81.63

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=88.70  E-value=0.13  Score=45.74  Aligned_cols=31  Identities=16%  Similarity=0.307  Sum_probs=0.0

Q ss_pred             ceeeehhhhhHHHhheeeeeEEEeecccCCc
Q psy3720          23 NAVVPIGATVIVVFVGLLVVCFAVSRRKGDG   53 (190)
Q Consensus        23 N~vVPv~A~i~Viiv~ivViCv~~~rrkg~g   53 (190)
                      +++.+++.+++.+|+|||+.|..|.||||+-
T Consensus       148 T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~  178 (290)
T PF05454_consen  148 TFIPAVVIAAILLIAGIIACICYRRKRKGKM  178 (290)
T ss_dssp             -------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence            3566666666667778888888888888764

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=88.01  E-value=0.15  Score=45.30  Aligned_cols=69  Identities=20%  Similarity=0.384  Sum_probs=0.0

Q ss_pred             ceeehhhHHHHHHHHHHhheeeeeecccCCCcccccCceeEeeccCCCcccccccc----chhhcCccCCC-CCC-----
Q psy3720          84 NAVVPIGATVIVVFVGLLVVCFAVSRRKGDGQTRLRDDIVYNQSMVGGMNTVDKRH----INEELGYIAPP-NRK-----  153 (190)
Q Consensus        84 nlvVPv~AtilViiv~ivViCv~~~Rr~g~~~~~~~dDvVYnqs~~~g~~TlDKrr----lrDELGYIaPP-NRK-----  153 (190)
                      +++.+++.+++.+|+|+|+.|.++.||+|+...   +|         - +|.=+++    +-|||-=.-|+ --|     
T Consensus       148 T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~~---ee---------~-~~f~~KGiPvIF~dElee~kp~~~~~~P~Il  214 (290)
T PF05454_consen  148 TFIPAVVIAAILLIAGIIACICYRRKRKGKMSL---EE---------Q-KTFISKGIPVIFQDELEESKPEPGSKSPVIL  214 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc---ch---------h-HHHHhcCCceeccccccccCCCCCCCCCeee
Confidence            466677777778888888888888888886521   11         1 1333334    67777664443 222     


Q ss_pred             ---CCCCCCCCCcch
Q psy3720         154 ---LPPVPGSNYNTC  165 (190)
Q Consensus       154 ---LPPVPGSnYNTC  165 (190)
                         =||.|.+.|+.-
T Consensus       215 keEkPPl~pp~y~~~  229 (290)
T PF05454_consen  215 KEEKPPLPPPEYPNS  229 (290)
T ss_dssp             ---------------
T ss_pred             cccCCCCCCCCCCCC
Confidence               367888888753

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=81.63  E-value=1.1  Score=38.42  Aligned_cols=30  Identities=20%  Similarity=0.506  Sum_probs=19.2

Q ss_pred             ceeehh-hHHHHHHHHHHhheeeeeecccCC
Q psy3720          84 NAVVPI-GATVIVVFVGLLVVCFAVSRRKGD  113 (190)
Q Consensus        84 nlvVPv-~AtilViiv~ivViCv~~~Rr~g~  113 (190)
                      +.+||| +.++|+.++.|++|.++.+|||..
T Consensus       270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~  300 (306)
T PF01299_consen  270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSR  300 (306)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence            788999 444555566666666666666543

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00