Psyllid ID: psy3752

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010--
Protein Sequence
MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEccHHHHccHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccHHHHHHHHccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccHHEEEcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccHHHHHHccccccEEEEEcccccccccccHHHHHHHHHcccEEEEEcccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHcccccEEEEEccccccHHHHcccccccEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccEEcccEEEccccHHHHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHHccccccEEHHHccccHHHHHHHHHccccccccHHHHHHcHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccEEEcccccccEEEEHHHEHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccEEEEEEEcHHHHHHccccccccccccccccccEEEEccccEEEEEHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHccccEEcccHcccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcHHHHccccccEEEEEccHHHHHHHHHHHHccccEEEEEEcccccccccEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccEEEEEEEEEccHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHccHHcccccccHHHHHHHHHHcccEEEEEEEEEcccccHHEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHcccEccHHHccHHHHHHHHHHHHHHHHHcccHHcccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHcccHEEEEEccccccEcccccccccccEHccccHHHHHHccccccHHHHHHHHHHccccEEEEEccccccHHHHHccccccEEEcccccEcHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccEEEEccEEEEHHHcEEEEEEEccEEEEEEcccccHHHHHHHHHHcccccccEEEccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdfeirdidlfnkpdnifrmnpygqvpilVERDLILYESNIIneyiderfpypqlmssdpLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLflknkymlgdefsmLDVVIAPLLWRldyyginlsksaspLIKYAERifsrpsymesltPAEKIMQAgvhfghqtrfwnpkmssyifghrnkIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIaneavragmpfidqrwlgglltnfKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIggiknmniipdaIFIIDVGYHKGAVSEAIKLNipiigvvdtnhspdginyvipgnddsaKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNisnrnakdGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITentpinldqlnnlkiknnlLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEyngdnesaVKDVAMHIAAMKpialssdqipkkIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESyiplnaikyleEGKVVIFaggignpffttDTTAALRAAEIKAEIILKATkvdgiynsdpnkcLSAIIYKKITFDEVISKKLEIMDSTafsfcrdqklpirVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRtgranigmldNIQVKYHEHLTKLLKIANItlfnshtisiqpFEKEMSSIIKKAINeanlglnptiqgniiyvsippltkERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Flexible Loop (DISEMBL)
mdfeirdidlfnkpdnifrmnPYGQVPILVERDLILYESNIINEyiderfpypqLMSSDPLMRARARLMLLNFEKEIFIHLymlenernktsikgykrAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGInlsksasplIKYAERIFSRPSYMESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAneavragmpfidQRWLGGLLTNFKTIKTSIQRLKEMdlfitngsirklskKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIeangklskaEEILRIKlgkkilnisnrnakdgVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITentpinldqlnnlKIKNNLLTVDEKCKELISRigenikirrfKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPialssdqipKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILkatkvdgiynsdpnKCLSAIIYKKITFDEVISKKLEIMDSTAfsfcrdqklpiRVFSIiksgalkrviegknegtlVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLikniteetkisirkirrdsnenlKKLLknkilsvdneYRAQYDIQKLTDKFILEINQllinkekeiltl
Low Complexity Region (SEG)
MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPlmrararlmllNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPinldqlnnlkiknnllTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYninssiikniiseiseivscgieLAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDttaalraaeikaeiilkatkVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNEnlkkllknkilSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Disordered region (IsUnstruct)
****IRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK*******
Disordered Region (DISOPRED)
**FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENER***********REEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSK******************MESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD***************************************************************************DFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVA**************************LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISI**********L*KLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Disordered Region (DISEMBL)
MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Disordered Region (DISPRO)
*DFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1012	2.2.26 [Sep-21-2011]
A6SZQ1	248	30S ribosomal protein S2	yes	N/A	0.216	0.883	0.684	4e-94
A4G4S1	248	30S ribosomal protein S2	yes	N/A	0.216	0.883	0.680	4e-94
B2UB06	247	30S ribosomal protein S2	yes	N/A	0.215	0.882	0.665	3e-87
Q0KA16	248	30S ribosomal protein S2	yes	N/A	0.215	0.879	0.642	4e-86
Q8XZJ1	247	30S ribosomal protein S2	yes	N/A	0.215	0.882	0.655	1e-85
Q2L162	249	30S ribosomal protein S2	yes	N/A	0.215	0.875	0.642	1e-85
B3R2B7	247	30S ribosomal protein S2	yes	N/A	0.215	0.882	0.646	2e-85
Q470D7	247	30S ribosomal protein S2	yes	N/A	0.215	0.882	0.646	2e-85
Q1LNF8	247	30S ribosomal protein S2	yes	N/A	0.215	0.882	0.646	8e-85
Q63T12	246	30S ribosomal protein S2	yes	N/A	0.215	0.886	0.646	9e-85

>sp|A6SZQ1|RS2_JANMA 30S ribosomal protein S2 OS=Janthinobacterium sp. (strain Marseille) GN=rpsB PE=3 SV=2

 Score =  347 bits (889), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 150/219 (68%), Positives = 193/219 (88%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRN+IHI+NLEKT+ MY++A++YI QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLSSNRGTV 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKEM+  I +GS++
Sbjct: 67  LFVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVQ 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL IP+IGVV
Sbjct: 127 KLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
           DTNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 187 DTNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRA 225

Janthinobacterium sp. (strain Marseille) (taxid: 375286)

>sp|A4G4S1|RS2_HERAR 30S ribosomal protein S2 OS=Herminiimonas arsenicoxydans GN=rpsB PE=3 SV=1

 Score =  346 bits (888), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 149/219 (68%), Positives = 192/219 (87%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ YIFGHRN+IHI+NLEKTL MY++A++YI QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPYIFGHRNRIHIVNLEKTLGMYQEAMKYIKQLSSNRGTV 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKE++  + +GS+ 
Sbjct: 67  LFVGTKRQARETIAAEAARAGMPYVDQRWLGGMLTNFKTIKTSIKRLKELEALVEDGSME 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL IP+IGVV
Sbjct: 127 KLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
           DTNHSP+G+ Y+IPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 187 DTNHSPEGVAYIIPGNDDSSKAIMLYARGVADAILEGRA 225

Herminiimonas arsenicoxydans (taxid: 204773)

>sp|B2UB06|RS2_RALPJ 30S ribosomal protein S2 OS=Ralstonia pickettii (strain 12J) GN=rpsB PE=3 SV=1

 Score =  323 bits (829), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 145/218 (66%), Positives = 187/218 (85%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL MY+ A++Y+ QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMYQDALKYVRQLAANRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQ+R ++A EA RAGMPF+D RWLGG+LTNFKT+KTSI+RLK+M++    G+  
Sbjct: 67  LFVGTKRQSREILAEEAARAGMPFVDSRWLGGMLTNFKTVKTSIKRLKDMEVAKEAGATE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
            +SKKEAL+F R+  KL + IGGIK+M  IPDAIF++DVGYHK AV+EA KL IP+IGVV
Sbjct: 127 TMSKKEALMFEREMDKLVKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 187 DTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Ralstonia pickettii (strain 12J) (taxid: 402626)

>sp|Q0KA16|RS2_CUPNH 30S ribosomal protein S2 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsB PE=3 SV=1

 Score =  320 bits (820), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 140/218 (64%), Positives = 187/218 (85%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL  ++GT+
Sbjct: 7   EMLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDAMKYVRQLAANRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+KTSI+RLK+M+     G++ 
Sbjct: 67  LFVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKTSIKRLKDMEAAKEAGALE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
            +SKKEAL+F R+ +KL + IGGIK+M  +PDAIF++DVGYHK AV+EA KL +P+IGVV
Sbjct: 127 TMSKKEALMFEREMLKLEKSIGGIKDMGGVPDAIFVVDVGYHKIAVTEANKLGVPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 187 DTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

>sp|Q8XZJ1|RS2_RALSO 30S ribosomal protein S2 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsB PE=3 SV=1

 Score =  318 bits (816), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 143/218 (65%), Positives = 185/218 (84%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL MY  A++Y+ QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMYLDALKYVRQLAANRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+K SI+RLK+M+     G++ 
Sbjct: 67  LFVGTKRQSREILAEEAARAGMPYVDSRWLGGMLTNFKTVKISIKRLKDMEAAKEAGALE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
            +SKKEAL+F R+  KL + IGGIK+M  IPDAIF++DVGYHK AV+EA KL IP+IGVV
Sbjct: 127 SMSKKEALMFEREMEKLEKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 187 DTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q2L162|RS2_BORA1 30S ribosomal protein S2 OS=Bordetella avium (strain 197N) GN=rpsB PE=3 SV=1

 Score =  318 bits (815), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 140/218 (64%), Positives = 184/218 (84%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTR+WNPKM+ YIFGHRNKIHIINLE+T+  Y++A +++ QL    G +
Sbjct: 6   EMLEAGVHFGHQTRYWNPKMAPYIFGHRNKIHIINLEQTVAKYQEATKFVKQLAARGGNI 65

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKR AR ++A EA R GMPF+D RWLGG+LTNFKT+K+SI+RLKEM++ + +GS+ 
Sbjct: 66  LFVGTKRAARELVATEAERCGMPFVDARWLGGMLTNFKTVKSSIKRLKEMEVMVADGSVE 125

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           +L+KKE LLF R+  KLN+ IGGIK+MN +PDA+F+IDVGYHK AV+EA  L IP++ VV
Sbjct: 126 RLTKKEGLLFQRELDKLNKAIGGIKDMNGLPDALFVIDVGYHKIAVAEARTLGIPVVAVV 185

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSPDG++Y+IPGNDDSA++IALY KGI DA L+ +
Sbjct: 186 DTNHSPDGVDYIIPGNDDSARAIALYAKGIADAVLEGR 223

Bordetella avium (strain 197N) (taxid: 360910)

>sp|B3R2B7|RS2_CUPTR 30S ribosomal protein S2 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsB PE=3 SV=1

 Score =  318 bits (815), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 141/218 (64%), Positives = 186/218 (85%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL  ++GT+
Sbjct: 7   EMLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDAMKYVRQLAANRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+KTSI+RLK+M+     G++ 
Sbjct: 67  LFVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKTSIKRLKDMEAAKEAGALE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
            +SKKEAL+F R+ +KL + IGGIK M  +PDAIF++DVGYHK AV+EA KL IP+IGVV
Sbjct: 127 TMSKKEALMFEREMIKLEKSIGGIKEMGGVPDAIFVVDVGYHKIAVTEANKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 187 DTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546)

>sp|Q470D7|RS2_CUPPJ 30S ribosomal protein S2 OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=rpsB PE=3 SV=1

 Score =  318 bits (814), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 141/218 (64%), Positives = 186/218 (85%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL  ++GT+
Sbjct: 7   EMLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDALKYVRQLAANRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           +FVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+KTSI+RLK+M+     G++ 
Sbjct: 67  MFVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKTSIKRLKDMEAAKEAGALD 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
            +SKKEAL+F R+ +KL + IGGIK M  IPDAIF++DVGYHK AV+EA KL IP+IGVV
Sbjct: 127 TMSKKEALMFEREMIKLEKSIGGIKEMGGIPDAIFVVDVGYHKIAVTEANKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 187 DTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

>sp|Q1LNF8|RS2_RALME 30S ribosomal protein S2 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpsB PE=3 SV=1

 Score =  315 bits (808), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 141/218 (64%), Positives = 185/218 (84%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL  ++GT+
Sbjct: 7   EMLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDALKYVRQLAANRGTV 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+K SI+RLK+M+     G++ 
Sbjct: 67  LFVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKISIKRLKDMEAAKEAGALE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
            +SKKEAL+F R+  KL + IGGIK+M  IPDAIF++DVGYHK AV+EA KL IP+IGVV
Sbjct: 127 TMSKKEALMFEREMEKLEKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEANKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 187 DTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264)

>sp|Q63T12|RS2_BURPS 30S ribosomal protein S2 OS=Burkholderia pseudomallei (strain K96243) GN=rpsB PE=3 SV=1

 Score =  315 bits (808), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 141/218 (64%), Positives = 185/218 (84%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL MY  A++Y+ QL  ++GT+
Sbjct: 7   QMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMYNDALKYVRQLAANRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQ+R  IA EA+RAGMP+++ RWLGG+LTNFKT+K SI+RLK+M+  +  G + 
Sbjct: 67  LFVGTKRQSRDTIAQEALRAGMPYVNARWLGGMLTNFKTLKVSIKRLKDMEAAVEAGELE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           K+SKKEALLF R+  KL + IGG+K+M  IPDAIF++DVGYHK AV+EA KL +P+I VV
Sbjct: 127 KMSKKEALLFEREIAKLQKSIGGVKDMGGIPDAIFVVDVGYHKIAVTEANKLGVPVIAVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+G++YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 187 DTNHSPEGVDYVIPGNDDSSKAVALYAQGVADAILEGR 224

Burkholderia pseudomallei (strain K96243) (taxid: 272560)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1012
329912037	248	SSU ribosomal protein S2p (SAe) [Oxaloba	0.227	0.927	0.656	7e-93
152980757	264	30S ribosomal protein S2 [Janthinobacter	0.226	0.867	0.669	2e-92
340786521	250	30S ribosomal protein S2 [Collimonas fun	0.216	0.876	0.689	3e-92
209573709	248	RecName: Full=30S ribosomal protein S2	0.216	0.883	0.684	3e-92
134094560	248	30S ribosomal protein S2 [Herminiimonas	0.216	0.883	0.680	3e-92
398836105	247	ribosomal protein S2 [Herbaspirillum sp.	0.216	0.886	0.689	1e-91
237747785	246	30S ribosomal subunit protein S2 [Oxalob	0.228	0.939	0.645	7e-91
409405990	259	30S ribosomal protein S2 [Herbaspirillum	0.215	0.841	0.697	9e-90
300311493	246	30S ribosomal protein S2 [Herbaspirillum	0.215	0.886	0.697	2e-89
415953991	259	30S ribosomal subunit protein S2 [Herbas	0.215	0.841	0.697	3e-89

>gi|329912037|ref|ZP_08275648.1| SSU ribosomal protein S2p (SAe) [Oxalobacteraceae bacterium IMCC9480] gi|327545760|gb|EGF30894.1| SSU ribosomal protein S2p (SAe) [Oxalobacteraceae bacterium IMCC9480]

 Score =  348 bits (894), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 155/236 (65%), Positives = 196/236 (83%), Gaps = 6/236 (2%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ YIFGHRNKIHI+NLEKTL MY+ A++YI QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPYIFGHRNKIHIVNLEKTLAMYQDAMKYIQQLSSNRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           L VGTKRQAR ++A EA RAGMPF+DQRWLGG+LTNFKTIKTSI+RLKEM+  I +GS+ 
Sbjct: 67  LMVGTKRQAREIVAAEAARAGMPFVDQRWLGGMLTNFKTIKTSIKRLKEMEASIADGSVE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKE L+F R+ +KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL IP+IGVV
Sbjct: 127 KLSKKEGLMFEREMIKLQKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKK 410
           DTNHSP+G+ Y+IPGNDDS+K+I LY +G+ DA L      E R+ +L  ++E  K
Sbjct: 187 DTNHSPEGVTYIIPGNDDSSKAIMLYARGVADAIL------EGRASSLNDVVEAVK 236

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152980757|ref|YP_001353748.1| 30S ribosomal protein S2 [Janthinobacterium sp. Marseille] gi|151280834|gb|ABR89244.1| small subunit ribosomal protein S2 [Janthinobacterium sp. Marseille]

 Score =  347 bits (890), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 154/230 (66%), Positives = 198/230 (86%), Gaps = 1/230 (0%)

Query: 164 PSYMESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRY 223
           P  + S+T  E +++AGVHFGHQTRFWNPKM+ +IFGHRN+IHI+NLEKT+ MY++A++Y
Sbjct: 13  PGDIMSVTMRE-MLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKY 71

Query: 224 IYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKE 283
           I QL  ++GT+LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKE
Sbjct: 72  IRQLSSNRGTVLFVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKE 131

Query: 284 MDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEA 343
           M+  I +GS++KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA
Sbjct: 132 MEASIEDGSVQKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEA 191

Query: 344 IKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
            KL IP+IGVVDTNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 192 AKLGIPVIGVVDTNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRA 241

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340786521|ref|YP_004751986.1| 30S ribosomal protein S2 [Collimonas fungivorans Ter331] gi|340551788|gb|AEK61163.1| SSU ribosomal protein S2p (SAe) [Collimonas fungivorans Ter331]

 Score =  347 bits (889), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 151/219 (68%), Positives = 190/219 (86%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A++YI QL  ++G +
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAMKYIRQLSSNRGNI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQAR ++A EA R+G PF+DQRWLGG+LTNFKTIKTSI+RLKEM+  I +GS+ 
Sbjct: 67  LFVGTKRQAREIVAAEAARSGSPFVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKE L+F R+ +KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL IP+IGVV
Sbjct: 127 KLSKKEGLMFQRELIKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
           DTNHSPDG+ YVIPGNDDS+K+IALY +G+ DA L+ + 
Sbjct: 187 DTNHSPDGVTYVIPGNDDSSKAIALYARGVADAILEGRA 225

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|209573709|sp|A6SZQ1.2|RS2_JANMA RecName: Full=30S ribosomal protein S2

 Score =  347 bits (889), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 150/219 (68%), Positives = 193/219 (88%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRN+IHI+NLEKT+ MY++A++YI QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLSSNRGTV 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKEM+  I +GS++
Sbjct: 67  LFVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVQ 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL IP+IGVV
Sbjct: 127 KLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
           DTNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 187 DTNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRA 225

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134094560|ref|YP_001099635.1| 30S ribosomal protein S2 [Herminiimonas arsenicoxydans] gi|166225279|sp|A4G4S1.1|RS2_HERAR RecName: Full=30S ribosomal protein S2 gi|133738463|emb|CAL61508.1| 30S ribosomal subunit protein S2 [Herminiimonas arsenicoxydans]

 Score =  346 bits (888), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 149/219 (68%), Positives = 192/219 (87%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ YIFGHRN+IHI+NLEKTL MY++A++YI QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPYIFGHRNRIHIVNLEKTLGMYQEAMKYIKQLSSNRGTV 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKE++  + +GS+ 
Sbjct: 67  LFVGTKRQARETIAAEAARAGMPYVDQRWLGGMLTNFKTIKTSIKRLKELEALVEDGSME 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL IP+IGVV
Sbjct: 127 KLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
           DTNHSP+G+ Y+IPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 187 DTNHSPEGVAYIIPGNDDSSKAIMLYARGVADAILEGRA 225

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398836105|ref|ZP_10593454.1| ribosomal protein S2 [Herbaspirillum sp. YR522] gi|398213936|gb|EJN00522.1| ribosomal protein S2 [Herbaspirillum sp. YR522]

 Score =  345 bits (884), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 151/219 (68%), Positives = 191/219 (87%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL ++++A +Y+ QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGLFQEATKYVRQLSSNRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQAR ++A EA RAG+PF+DQRWLGG+LTNFKTIKTSI+RLK+M+  I +GS+ 
Sbjct: 67  LFVGTKRQAREILAGEAQRAGVPFVDQRWLGGMLTNFKTIKTSIKRLKDMEASIEDGSVE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKE LLF R+  KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL IP+IGVV
Sbjct: 127 KLSKKEGLLFRRELEKLQKSIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
           DTNHSP+G+NY+IPGNDDSAK+IALY +GI DA L+ + 
Sbjct: 187 DTNHSPEGVNYIIPGNDDSAKAIALYARGIADAVLEGRA 225

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|237747785|ref|ZP_04578265.1| 30S ribosomal subunit protein S2 [Oxalobacter formigenes OXCC13] gi|229379147|gb|EEO29238.1| 30S ribosomal subunit protein S2 [Oxalobacter formigenes OXCC13]

 Score =  342 bits (877), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 153/237 (64%), Positives = 193/237 (81%), Gaps = 6/237 (2%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY  A+ YI QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLAMYNDAMNYIRQLAANRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           L VGTKRQAR +IA EA RAGMPF+DQRWLGG+LTNFKTIKTSI+RLK+M+  I +GS+ 
Sbjct: 67  LMVGTKRQARDIIAAEAQRAGMPFVDQRWLGGMLTNFKTIKTSIKRLKDMEAAIEDGSVE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           K+SKKE L+F R+  KL + IGGIK+MN +PDAIF++DVGYHKGA++EA KL IP+IGVV
Sbjct: 127 KMSKKEGLMFSREVEKLQKSIGGIKDMNGLPDAIFVVDVGYHKGAITEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKA 411
           DTNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L      E R+  +  ++E  K 
Sbjct: 187 DTNHSPEGLAYVIPGNDDSSKAIQLYARGVADAIL------EGRANAMHDVLEAAKG 237

Source: Oxalobacter formigenes OXCC13

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|409405990|ref|ZP_11254452.1| 30S ribosomal protein S2 [Herbaspirillum sp. GW103] gi|386434539|gb|EIJ47364.1| 30S ribosomal protein S2 [Herbaspirillum sp. GW103]

 Score =  338 bits (867), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 152/218 (69%), Positives = 193/218 (88%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A++Y+ QL  ++GT+
Sbjct: 20  EMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAVKYVRQLSANRGTI 79

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQAR ++A EA RAG+P++DQRWLGG+LTNFKTIKTSI+RLK+M+  + +GS+ 
Sbjct: 80  LFVGTKRQARDILAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAMEDGSVE 139

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKEALLF R+Q KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL IP+IGVV
Sbjct: 140 KLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVV 199

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+G+ YVIPGNDDSAK+IALY +G+ DA L+ +
Sbjct: 200 DTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGR 237

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300311493|ref|YP_003775585.1| 30S ribosomal protein S2 [Herbaspirillum seropedicae SmR1] gi|124483406|emb|CAM32576.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae] gi|300074278|gb|ADJ63677.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae SmR1]

 Score =  337 bits (864), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 152/218 (69%), Positives = 192/218 (88%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A +Y+ QL  ++GT+
Sbjct: 7   EMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAQKYVRQLSANRGTI 66

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQAR ++A EA RAG+P++DQRWLGG+LTNFKTIKTSI+RLK+M+  + +GS+ 
Sbjct: 67  LFVGTKRQAREILAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAVEDGSVE 126

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKEALLF R+Q KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL IP+IGVV
Sbjct: 127 KLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVV 186

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+G+ YVIPGNDDSAK+IALY +G+ DA L+ +
Sbjct: 187 DTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGR 224

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|415953991|ref|ZP_11557319.1| 30S ribosomal subunit protein S2 [Herbaspirillum frisingense GSF30] gi|407757195|gb|EKF67231.1| 30S ribosomal subunit protein S2 [Herbaspirillum frisingense GSF30]

 Score =  336 bits (862), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 152/218 (69%), Positives = 192/218 (88%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A +Y+ QL  ++GT+
Sbjct: 20  EMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAQKYVRQLSSNRGTI 79

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQAR ++A EA RAG+P++DQRWLGG+LTNFKTIKTSI+RLK+M+  + +GS+ 
Sbjct: 80  LFVGTKRQAREILAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAVEDGSVE 139

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
           KLSKKEALLF R+Q KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL IP+IGVV
Sbjct: 140 KLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVV 199

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTNHSP+G+ YVIPGNDDSAK+IALY +G+ DA L+ +
Sbjct: 200 DTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGR 237

Source: Herbaspirillum frisingense GSF30

Species: Herbaspirillum frisingense

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1012
UNIPROTKB|Q9KPV2	242	rpsB "30S ribosomal protein S2	0.230	0.962	0.475	1.9e-58
TIGR_CMR|VC_2260	242	VC_2260 "ribosomal protein S2"	0.230	0.962	0.475	1.9e-58
TIGR_CMR|GSU_1921	251	GSU_1921 "ribosomal protein S2	0.220	0.888	0.508	1.1e-57
TIGR_CMR|CPS_1553	242	CPS_1553 "ribosomal protein S2	0.214	0.896	0.474	5.2e-57
TIGR_CMR|SO_1629	242	SO_1629 "ribosomal protein S2"	0.209	0.876	0.504	8.7e-57
UNIPROTKB|P0A7V0	241	rpsB [Escherichia coli K-12 (t	0.229	0.962	0.475	3.1e-56
TIGR_CMR|CHY_1787	232	CHY_1787 "ribosomal protein S2	0.219	0.956	0.484	1.1e-54
TIGR_CMR|BA_3965	233	BA_3965 "ribosomal protein S2"	0.224	0.974	0.482	6.3e-54
TIGR_CMR|ECH_0514	288	ECH_0514 "ribosomal protein S2	0.212	0.746	0.495	8.1e-54
TIGR_CMR|DET_0377	245	DET_0377 "ribosomal protein S2	0.219	0.906	0.445	1.1e-51

UNIPROTKB|Q9KPV2 rpsB "30S ribosomal protein S2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 605 (218.0 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 114/240 (47%), Positives = 169/240 (70%)

Query:   176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
             ++ AGVHFGHQTR+WNPKM  +IFG RN++HIINLEKT+ M+ +A+  + ++G  KG +L
Sbjct:     9 MLTAGVHFGHQTRYWNPKMKQFIFGARNRVHIINLEKTVPMFNEALAELAKVGEKKGKVL 68

Query:   236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
             FVGTKR A   +   A+ +   +++ RWLGG+LTN+KT++ SI+RLKE+++  T+G+  K
Sbjct:    69 FVGTKRAASESVKEAALASNQYYVNNRWLGGMLTNWKTVRQSIKRLKELEVQSTDGTFDK 128

Query:   296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
             L+KKEAL+  R+  KL + +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  VVD
Sbjct:   129 LTKKEALMRTREMEKLEKSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAVVD 188

Query:   356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 415
             TN SPDG++Y+IPGNDD+ +++ LY          A+ + E R+K +A + E K   +EA
Sbjct:   189 TNSSPDGVDYIIPGNDDAIRAVQLYLNAA------AQAINEGRNKDVAAVAE-KDGFVEA 241

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2260 VC_2260 "ribosomal protein S2" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 605 (218.0 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 114/240 (47%), Positives = 169/240 (70%)

Query:   176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
             ++ AGVHFGHQTR+WNPKM  +IFG RN++HIINLEKT+ M+ +A+  + ++G  KG +L
Sbjct:     9 MLTAGVHFGHQTRYWNPKMKQFIFGARNRVHIINLEKTVPMFNEALAELAKVGEKKGKVL 68

Query:   236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
             FVGTKR A   +   A+ +   +++ RWLGG+LTN+KT++ SI+RLKE+++  T+G+  K
Sbjct:    69 FVGTKRAASESVKEAALASNQYYVNNRWLGGMLTNWKTVRQSIKRLKELEVQSTDGTFDK 128

Query:   296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
             L+KKEAL+  R+  KL + +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  VVD
Sbjct:   129 LTKKEALMRTREMEKLEKSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAVVD 188

Query:   356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 415
             TN SPDG++Y+IPGNDD+ +++ LY          A+ + E R+K +A + E K   +EA
Sbjct:   189 TNSSPDGVDYIIPGNDDAIRAVQLYLNAA------AQAINEGRNKDVAAVAE-KDGFVEA 241

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_1921 GSU_1921 "ribosomal protein S2" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 598 (215.6 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 114/224 (50%), Positives = 160/224 (71%)

Query:   167 MESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQ 226
             M ++T  E +++AGVHFGHQT+ WNPKM  YIFG RN I+II+L+KT+ +++ A  ++ +
Sbjct:     1 MSNITMKE-LLEAGVHFGHQTKRWNPKMKPYIFGARNGIYIIDLQKTVRLFKNAYNFVRE 59

Query:   227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
                +  T+LFVGTK+QA+  I  EAVR GM F++QRWLGG+LTNF T+K SI RLK +D 
Sbjct:    60 NAQAGETMLFVGTKKQAQDAIGEEAVRCGMYFVNQRWLGGMLTNFVTVKQSIDRLKRLDA 119

Query:   287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
                +GSI   +KKEAL   +++ KL +++GGIK M  +P A+F+ID      A+SEA KL
Sbjct:   120 MFADGSIEAYTKKEALQLEKEREKLEKILGGIKGMGKLPGALFVIDPKNETIAISEAKKL 179

Query:   347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 390
              IP++ VVDTN  PD I+YVIPGNDD+ ++I L T  + DA ++
Sbjct:   180 GIPVVAVVDTNCDPDPIDYVIPGNDDAIRAIRLLTSKMADAVIE 223

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CPS_1553 CPS_1553 "ribosomal protein S2" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 592 (213.5 bits), Expect = 5.2e-57, P = 5.2e-57
 Identities = 103/217 (47%), Positives = 160/217 (73%)

Query:   176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
             +++AGVHFGH+TR+WNPKM  +IFG R+K+HIINLE+T+ M+ +A+ ++  +   KG +L
Sbjct:     9 MLKAGVHFGHKTRYWNPKMKQFIFGARDKVHIINLEQTVPMFNEALAFVNNVSSKKGKVL 68

Query:   236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
             FVGTKR A   I + A+++   +++ RWLGG+LTN+KT++ SI+RLK+++   T+G+   
Sbjct:    69 FVGTKRAASDAIKDAAIKSDQFYVNHRWLGGMLTNWKTVRQSIKRLKDLESQSTDGTFEA 128

Query:   296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
             L+KKEAL+  R+  KL++ +GGIKNM  +PD +FIID  +   A+ EA  L IP+I VVD
Sbjct:   129 LTKKEALMRTREMEKLDKSLGGIKNMGGLPDVLFIIDADHEHIAIKEANNLGIPVISVVD 188

Query:   356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
             TN +PDG++YV+PGNDD+ +++ LY   + ++ L  +
Sbjct:   189 TNSNPDGVDYVVPGNDDAIRAVTLYCDAVANSVLSGR 225

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|SO_1629 SO_1629 "ribosomal protein S2" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 590 (212.7 bits), Expect = 8.7e-57, P = 8.7e-57
 Identities = 107/212 (50%), Positives = 151/212 (71%)

Query:   176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
             ++QAGVHFGHQTR+WNPKM  +IFG RN +HIINLE T+ M+ +A+ +I  +   KG +L
Sbjct:     9 MLQAGVHFGHQTRYWNPKMKPFIFGARNGVHIINLEHTVPMFNEALAFISNVASKKGKVL 68

Query:   236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
             FVGTKR A   I   A+     ++D RWLGG+LTN+KT++ SI+RLKE++    +G+  K
Sbjct:    69 FVGTKRAAGEAIKEAAISCDQYYVDHRWLGGMLTNWKTVRQSIKRLKELESQSVDGTFDK 128

Query:   296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
             L+KKEAL+  R+  KL + +GGIKNM  +PD +F+I   +   A+ EA  L IP++ VVD
Sbjct:   129 LTKKEALMRTRELEKLEKSLGGIKNMGGLPDVLFVIGADHEHIAIKEANNLGIPVVAVVD 188

Query:   356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDA 387
             TN +PDG+NY++PGNDD+ ++I LYT  +  A
Sbjct:   189 TNSAPDGVNYIVPGNDDAMRAIRLYTTSVAAA 220

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7V0 rpsB [Escherichia coli K-12 (taxid:83333)]

 Score = 585 (211.0 bits), Expect = 3.1e-56, P = 3.1e-56
 Identities = 114/240 (47%), Positives = 168/240 (70%)

Query:   176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
             +++AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++   KG +L
Sbjct:     9 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 68

Query:   236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
             FVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    +G+  K
Sbjct:    69 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 128

Query:   296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
             L+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  +VD
Sbjct:   129 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 188

Query:   356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 415
             TN  PDG+++VIPGNDD+ +++ LY  G V     A TV E RS+ LA   + +++ +EA
Sbjct:   189 TNSDPDGVDFVIPGNDDAIRAVTLYL-GAV-----AATVREGRSQDLAS--QAEESFVEA 240

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA;IPI

GO:0008270 "zinc ion binding" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CHY_1787 CHY_1787 "ribosomal protein S2" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 571 (206.1 bits), Expect = 1.1e-54, P = 1.1e-54
 Identities = 108/223 (48%), Positives = 157/223 (70%)

Query:   174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
             +++++AGVHFGHQTR WNPKM+ YIF  RN I+II+L+KT    E+A  ++ +L    GT
Sbjct:     7 KQLLEAGVHFGHQTRRWNPKMAEYIFTDRNGIYIIDLQKTAKKLEEAYSFVRELSAQGGT 66

Query:   234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
             +LFVGTK+QA+  I  EA R GM +++QRWLGG LTNFKTI+  ++RL E++     G++
Sbjct:    67 ILFVGTKKQAQDAIKEEAERCGMFYVNQRWLGGTLTNFKTIRKRVERLIEIEKMEQEGAL 126

Query:   294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
               L KKE     +++ KL+R + GIK M  +PDA+F++D    K AV+EA KL+IP++ +
Sbjct:   127 SVLPKKEVAKILKEKEKLSRFLSGIKEMKKLPDALFVVDPRKEKIAVAEARKLDIPVVAI 186

Query:   354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGE 396
             VDTN  PD ++YVIPGNDD+ +++ L T  I DA ++ +  GE
Sbjct:   187 VDTNCDPDEVDYVIPGNDDAIRAVKLITSKIADAVIEGRQ-GE 228

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_3965 BA_3965 "ribosomal protein S2" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 564 (203.6 bits), Expect = 6.3e-54, P = 6.3e-54
 Identities = 110/228 (48%), Positives = 160/228 (70%)

Query:   169 SLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 228
             S+   +++++AGVHFGHQTR WNPKM  YIF  RN I+II+L+KT+   E+A + +  + 
Sbjct:     2 SVISMKQLLEAGVHFGHQTRRWNPKMKRYIFTERNGIYIIDLQKTVKKVEEAFKVMRDIA 61

Query:   229 FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 288
                G +LFVGTK+QA+  I  EA RAGM F++QRWLGG LTNF+TI+  I+RLK+++   
Sbjct:    62 AEGGDILFVGTKKQAQEAIKEEATRAGMYFVNQRWLGGTLTNFQTIQKRIKRLKDIERMQ 121

Query:   289 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 348
              +G+   L KKE +   ++  +L + +GGIK+M  +P A+F++D    + AV+EA KL+I
Sbjct:   122 EDGTFEVLPKKEVVQLKKELERLEKFLGGIKDMKGLPSALFVVDPRKERIAVAEARKLHI 181

Query:   349 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGE 396
             PIIG+VDTN  PD I++VIP NDD+ +++ L T  + DA L+AK  GE
Sbjct:   182 PIIGIVDTNCDPDEIDHVIPANDDAIRAVKLLTSKMADAILEAKQ-GE 228

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|ECH_0514 ECH_0514 "ribosomal protein S2" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 563 (203.2 bits), Expect = 8.1e-54, P = 8.1e-54
 Identities = 107/216 (49%), Positives = 152/216 (70%)

Query:   176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
             ++++GVHFGH+   WNPKM+ YI+G  N IHIINL+ T+ + + A++ +Y +   +G +L
Sbjct:    12 LVESGVHFGHKASRWNPKMAPYIYGVHNDIHIINLQNTVVLLKNALKALYDIVLKRGRVL 71

Query:   236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
             F+GTK QA  +IA+EAVR G  +I+ RWLGG+LTN++TI  SI++LKE +  I N    +
Sbjct:    72 FIGTKVQASAIIADEAVRCGQYYINNRWLGGMLTNWETISLSIKKLKEYEKLIENVD-NQ 130

Query:   296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
              +KKE LLF +K+ KL+R IGGI NM  +P A+F+ID      A+ EA KLNIP+I V+D
Sbjct:   131 FTKKELLLFEKKRAKLDRSIGGICNMGGLPHALFVIDTNKEHIAIKEANKLNIPVIAVLD 190

Query:   356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDA 391
             TN  P GI+Y IPGNDD+ +SI  + K + D  L+A
Sbjct:   191 TNSDPAGIDYPIPGNDDAVRSIDFFCKIVSDTILEA 226

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|DET_0377 DET_0377 "ribosomal protein S2" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 521 (188.5 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
 Identities = 99/222 (44%), Positives = 148/222 (66%)

Query:   171 TPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFS 230
             T  +++++AG HFGHQT  W+P+M  YIF  RN IHII+LEKT+ M +KA  YI Q+   
Sbjct:     4 TNIKELLEAGAHFGHQTSRWHPRMKKYIFTKRNGIHIIDLEKTVVMLDKACNYINQVVSE 63

Query:   231 KGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITN 290
              G +LFVGTK+QA+ ++A EA R GM FI+QRW GG+LTNF +I++ I  L  ++     
Sbjct:    64 GGKVLFVGTKKQAQEILAEEAKRCGMYFINQRWTGGILTNFHSIQSRIDYLVRLEDQQAR 123

Query:   291 GSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPI 350
             G   +L KKEA     +  +LNR +GG K M  +PD IF++D    K A++EA ++ +P+
Sbjct:   124 GDFNRLPKKEAQKLAEEIARLNRTMGGFKEMTRLPDVIFVVDPTKEKIAMAEAKRMGVPL 183

Query:   351 IGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
             + +VDTN +PD ++Y IP NDD+ ++I L    + D+ ++A+
Sbjct:   184 VAMVDTNCNPDEVDYPIPSNDDAMRAIKLICSKMADSVIEAQ 225

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1XTU3	RS2_POLNS	No assigned EC number	0.6118	0.2164	0.8795	yes	N/A
A1V569	RS2_BURMS	No assigned EC number	0.6467	0.2154	0.8861	yes	N/A
Q63T12	RS2_BURPS	No assigned EC number	0.6467	0.2154	0.8861	yes	N/A
B4ECN1	RS2_BURCJ	No assigned EC number	0.6376	0.2154	0.8861	yes	N/A
A4G4S1	RS2_HERAR	No assigned EC number	0.6803	0.2164	0.8830	yes	N/A
Q1H139	RS2_METFK	No assigned EC number	0.6284	0.2154	0.8755	yes	N/A
Q12A31	RS2_POLSJ	No assigned EC number	0.6278	0.2193	0.888	yes	N/A
Q470D7	RS2_CUPPJ	No assigned EC number	0.6467	0.2154	0.8825	yes	N/A
Q7WA60	RS2_BORPA	No assigned EC number	0.6238	0.2154	0.8755	yes	N/A
B1XXJ5	RS2_LEPCP	No assigned EC number	0.6330	0.2144	0.875	yes	N/A
A2SB72	RS2_BURM9	No assigned EC number	0.6467	0.2154	0.8861	yes	N/A
Q0KA16	RS2_CUPNH	No assigned EC number	0.6422	0.2154	0.8790	yes	N/A
B9MGL7	RS2_ACIET	No assigned EC number	0.6467	0.2144	0.868	yes	N/A
Q39F43	RS2_BURS3	No assigned EC number	0.6376	0.2154	0.8861	yes	N/A
Q0AEH4	RS2_NITEC	No assigned EC number	0.5963	0.2154	0.8685	yes	N/A
A4JF75	RS2_BURVG	No assigned EC number	0.6422	0.2154	0.8861	yes	N/A
A3NAU8	RS2_BURP6	No assigned EC number	0.6467	0.2154	0.8861	yes	N/A
B1YS74	RS2_BURA4	No assigned EC number	0.6422	0.2154	0.8861	yes	N/A
Q13XB6	RS2_BURXL	No assigned EC number	0.6467	0.2154	0.872	yes	N/A
A0K8E3	RS2_BURCH	No assigned EC number	0.6376	0.2154	0.8861	yes	N/A
Q1BHI2	RS2_BURCA	No assigned EC number	0.6376	0.2154	0.8861	yes	N/A
Q8XZJ1	RS2_RALSO	No assigned EC number	0.6559	0.2154	0.8825	yes	N/A
C5CKS0	RS2_VARPS	No assigned EC number	0.6261	0.2183	0.884	yes	N/A
A1TN69	RS2_ACIAC	No assigned EC number	0.6392	0.2154	0.872	yes	N/A
B2UB06	RS2_RALPJ	No assigned EC number	0.6651	0.2154	0.8825	yes	N/A
A4SYV1	RS2_POLSQ	No assigned EC number	0.6118	0.2164	0.8795	yes	N/A
A6SZQ1	RS2_JANMA	No assigned EC number	0.6849	0.2164	0.8830	yes	N/A
B3R2B7	RS2_CUPTR	No assigned EC number	0.6467	0.2154	0.8825	yes	N/A
Q7WJ94	RS2_BORBR	No assigned EC number	0.6238	0.2154	0.8755	yes	N/A
A9BMN2	RS2_DELAS	No assigned EC number	0.6376	0.2144	0.868	yes	N/A
A3NWN1	RS2_BURP0	No assigned EC number	0.6467	0.2154	0.8861	yes	N/A
Q2L162	RS2_BORA1	No assigned EC number	0.6422	0.2154	0.8755	yes	N/A
A1W918	RS2_ACISJ	No assigned EC number	0.6422	0.2144	0.868	yes	N/A
B2T5J4	RS2_BURPP	No assigned EC number	0.6513	0.2154	0.872	yes	N/A
B2JIC6	RS2_BURP8	No assigned EC number	0.6422	0.2154	0.872	yes	N/A
Q1LNF8	RS2_RALME	No assigned EC number	0.6467	0.2154	0.8825	yes	N/A
Q2YBA7	RS2_NITMU	No assigned EC number	0.6376	0.2154	0.8790	yes	N/A
Q0BE15	RS2_BURCM	No assigned EC number	0.6422	0.2154	0.8861	yes	N/A
A1WHU2	RS2_VEREI	No assigned EC number	0.6392	0.2154	0.872	yes	N/A
A1K6S1	RS2_AZOSB	No assigned EC number	0.6255	0.2164	0.8725	yes	N/A
A1VN40	RS2_POLNA	No assigned EC number	0.6210	0.2154	0.872	yes	N/A
Q62JC4	RS2_BURMA	No assigned EC number	0.6467	0.2154	0.8861	yes	N/A
Q21WY9	RS2_RHOFD	No assigned EC number	0.6164	0.2154	0.872	yes	N/A
Q2SWZ8	RS2_BURTA	No assigned EC number	0.6376	0.2154	0.8861	yes	N/A
Q7VYD0	RS2_BORPE	No assigned EC number	0.6238	0.2154	0.8755	yes	N/A
A3MKU3	RS2_BURM7	No assigned EC number	0.6467	0.2154	0.8861	yes	N/A
B1JUF0	RS2_BURCC	No assigned EC number	0.6376	0.2154	0.8861	yes	N/A
Q47F92	RS2_DECAR	No assigned EC number	0.6392	0.2164	0.8830	yes	N/A
Q3JR28	RS2_BURP1	No assigned EC number	0.6467	0.2154	0.8861	yes	N/A
Q5NZH5	RS2_AROAE	No assigned EC number	0.6255	0.2164	0.8725	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.691
4th Layer	2.7.4.22	LOW CONFIDENCE prediction!
4th Layer	2.7.2.4	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1012
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	1e-117
cd04254	231	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t	1e-109
PRK00358	231	PRK00358, pyrH, uridylate kinase; Provisional	1e-102
COG0052	252	COG0052, RpsB, Ribosomal protein S2 [Translation,	6e-95
TIGR02075	232	TIGR02075, pyrH_bact, uridylate kinase	2e-94
cd04239	229	cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase	6e-90
COG0528	238	COG0528, PyrH, Uridylate kinase [Nucleotide transp	1e-89
TIGR01011	225	TIGR01011, rpsB_bact, ribosomal protein S2, bacter	6e-89
pfam00318	205	pfam00318, Ribosomal_S2, Ribosomal protein S2	9e-83
PRK09377	290	PRK09377, tsf, elongation factor Ts; Provisional	2e-76
PRK12311	326	PRK12311, rpsB, 30S ribosomal protein S2/unknown d	6e-74
PRK00083	185	PRK00083, frr, ribosome recycling factor; Reviewed	7e-70
cd01425	193	cd01425, RPS2, Ribosomal protein S2 (RPS2), involv	3e-69
CHL00067	230	CHL00067, rps2, ribosomal protein S2	1e-66
COG0264	296	COG0264, Tsf, Translation elongation factor Ts [Tr	4e-65
COG0233	187	COG0233, Frr, Ribosome recycling factor [Translati	3e-63
PRK14558	231	PRK14558, pyrH, uridylate kinase; Provisional	2e-60
pfam01765	165	pfam01765, RRF, Ribosome recycling factor	4e-59
PRK14556	249	PRK14556, pyrH, uridylate kinase; Provisional	7e-55
cd00520	179	cd00520, RRF, Ribosome recycling factor (RRF)	3e-53
TIGR00496	176	TIGR00496, frr, ribosome recycling factor	1e-48
PRK09481	211	PRK09481, sspA, stringent starvation protein A; Pr	2e-46
PRK14557	247	PRK14557, pyrH, uridylate kinase; Provisional	8e-46
TIGR00116	291	TIGR00116, tsf, translation elongation factor Ts	4e-43
cd03186	108	cd03186, GST_C_SspA, C-terminal, alpha helical dom	3e-36
PRK12332	198	PRK12332, tsf, elongation factor Ts; Reviewed	6e-32
COG0625	211	COG0625, Gst, Glutathione S-transferase [Posttrans	1e-31
CHL00098	200	CHL00098, tsf, elongation factor Ts	1e-27
cd03059	73	cd03059, GST_N_SspA, GST_N family, Stringent starv	5e-22
cd02115	248	cd02115, AAK, Amino Acid Kinases (AAK) superfamily	1e-21
pfam00696	230	pfam00696, AA_kinase, Amino acid kinase family	2e-21
cd04253	221	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k	2e-16
TIGR02076	221	TIGR02076, pyrH_arch, uridylate kinase, putative	4e-15
pfam00889	134	pfam00889, EF_TS, Elongation factor TS	8e-14
pfam00889	134	pfam00889, EF_TS, Elongation factor TS	1e-11
PRK15113	214	PRK15113, PRK15113, glutathione S-transferase; Pro	1e-11
cd04246	239	cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino	1e-11
pfam13417	75	pfam13417, GST_N_3, Glutathione S-transferase, N-t	6e-11
cd04261	239	cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino	3e-10
PRK12332	198	PRK12332, tsf, elongation factor Ts; Reviewed	9e-10
TIGR01262	210	TIGR01262, maiA, maleylacetoacetate isomerase	9e-10
TIGR01012	196	TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosol	1e-09
cd00570	71	cd00570, GST_N_family, Glutathione S-transferase (	2e-09
pfam13410	69	pfam13410, GST_C_2, Glutathione S-transferase, C-t	4e-09
TIGR00657	441	TIGR00657, asp_kinases, aspartate kinase	4e-08
TIGR00656	401	TIGR00656, asp_kin_monofn, aspartate kinase, monof	8e-08
PRK04020	204	PRK04020, rps2P, 30S ribosomal protein S2; Provisi	8e-08
cd03053	76	cd03053, GST_N_Phi, GST_N family, Class Phi subfam	1e-07
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	1e-07
cd03055	89	cd03055, GST_N_Omega, GST_N family, Class Omega su	3e-07
cd04234	227	cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa	5e-07
cd03058	74	cd03058, GST_N_Tau, GST_N family, Class Tau subfam	6e-07
PLN02817	265	PLN02817, PLN02817, glutathione dehydrogenase (asc	6e-07
cd04260	244	cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A	8e-07
PRK08210	403	PRK08210, PRK08210, aspartate kinase I; Reviewed	1e-06
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	6e-06
cd03046	76	cd03046, GST_N_GTT1_like, GST_N family, Saccharomy	7e-06
pfam13409	68	pfam13409, GST_N_2, Glutathione S-transferase, N-t	9e-06
cd04258	292	cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami	1e-05
pfam00043	92	pfam00043, GST_C, Glutathione S-transferase, C-ter	2e-05
PRK10542	201	PRK10542, PRK10542, glutathionine S-transferase; P	2e-05
pfam02798	74	pfam02798, GST_N, Glutathione S-transferase, N-ter	3e-05
cd00299	100	cd00299, GST_C_family, C-terminal, alpha helical d	4e-05
cd03056	73	cd03056, GST_N_4, GST_N family, unknown subfamily	9e-05
cd04243	293	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino	1e-04
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	3e-04
cd03180	110	cd03180, GST_C_2, C-terminal, alpha helical domain	4e-04
cd03047	73	cd03047, GST_N_2, GST_N family, unknown subfamily	5e-04
cd03057	77	cd03057, GST_N_Beta, GST_N family, Class Beta subf	7e-04
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	7e-04
COG1608	252	COG1608, COG1608, Predicted archaeal kinase [Gener	0.001
cd03207	101	cd03207, GST_C_8, C-terminal, alpha helical domain	0.001
PRK10357	202	PRK10357, PRK10357, putative glutathione S-transfe	0.002
cd04255	262	cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i	0.002
cd03188	113	cd03188, GST_C_Beta, C-terminal, alpha helical dom	0.002
PLN02378	213	PLN02378, PLN02378, glutathione S-transferase DHAR	0.002
PRK08841	392	PRK08841, PRK08841, aspartate kinase; Validated	0.003
cd10291	110	cd10291, GST_C_YfcG_like, C-terminal, alpha helica	0.003
cd04244	298	cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino	0.003

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score =  360 bits (926), Expect = e-117
 Identities = 117/219 (53%), Positives = 163/219 (74%)

Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           +++++AGVHFGHQTR WNPKM  YIFG RN IHII+L+KT+ M ++A  ++  +  + G 
Sbjct: 7   KQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGK 66

Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
           +LFVGTK+QA+  IA EA R GMP+++ RWLGG+LTNFKTI+ SI+RLKE++    +G+ 
Sbjct: 67  ILFVGTKKQAQEAIAEEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTF 126

Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            KL+KKEAL+  R+  KL + +GGIK+M  +PDA+F++D      AV EA KL IP++ +
Sbjct: 127 EKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDALFVVDPNKEHIAVKEARKLGIPVVAI 186

Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           VDTN  PDG++Y IPGNDD+ +SI LYT  I DA L+ +
Sbjct: 187 VDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGR 225

Length = 258

>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score =  337 bits (868), Expect = e-109
 Identities = 122/223 (54%), Positives = 163/223 (73%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL   + + I+  ++  I  EI E+V  G+E+AIV+GGGNI RG S     +DR+TAD
Sbjct: 9   GEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATAD 68

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           YMGMLAT+IN+LAL D L   G+ + VMSAI ++   E YI   AI++LE+G+VVIFAGG
Sbjct: 69  YMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGG 128

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
            GNPFFTTDT AALRA EI A++ILKATKVDG+Y++DP K  +A  Y  +T+DEV+SK L
Sbjct: 129 TGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGL 188

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822
           ++MD+TAF+ CRD  LPI VF+I + G L + ++G+  GTL+ 
Sbjct: 189 KVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231

>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional

 Score =  320 bits (822), Expect = e-102
 Identities = 118/222 (53%), Positives = 161/222 (72%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL     + I+  ++  I  EI E+V  G+E+AIV+GGGNI RG       +DR+TAD
Sbjct: 9   GEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATAD 68

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           YMGMLAT++N+LAL D L ++G+ + V SAI + +  E YI   AI++LE+G+VVIFA G
Sbjct: 69  YMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAG 128

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
            GNPFFTTDT AALRA EI A+++LKAT VDG+Y++DP K   A  Y ++T+DEV+ K L
Sbjct: 129 TGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL 188

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           ++MD+TA S  RD K+PI VF++ K G LKRV++G++ GTLV
Sbjct: 189 KVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLV 230

Length = 231

>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

 Score =  300 bits (771), Expect = 6e-95
 Identities = 113/251 (45%), Positives = 165/251 (65%), Gaps = 3/251 (1%)

Query: 172 PAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSK 231
             +++++AGVHFGHQTR WNPKM  +IFG RN IHII+L+KTL    +A +++ ++  + 
Sbjct: 5   SMKQLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANG 64

Query: 232 GTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNG 291
           G +LFVGTK+QA+  +   A R G  +++ RWLGG+LTNFKTI+ SI+RLKE++    +G
Sbjct: 65  GKILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG 124

Query: 292 SIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPII 351
               L+KKEAL+  R+  KL + +GGIK+M  +PD +F+ID    K AV EA KL IP++
Sbjct: 125 -FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGIPVV 183

Query: 352 GVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKA 411
            +VDTN  PDG++YVIPGNDD+ +SIAL    +  A L+ +  G    +  A I E ++ 
Sbjct: 184 ALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGR--GGALDEEEAAIEEDEEV 241

Query: 412 LIEANGKLSKA 422
                 + +  
Sbjct: 242 EEFEAKEEAAE 252

Length = 252

>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase

 Score =  298 bits (766), Expect = 2e-94
 Identities = 128/222 (57%), Positives = 157/222 (70%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL     + I+   +  I +EI E+V  GIE+ IVIGGGNI RG+S     IDR +AD
Sbjct: 10  GEALAGESQFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAAELGIDRVSAD 69

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           YMGMLAT+IN LAL D L K G+ + V+SAIS+ +  ESYI   AIK+LE+GKVVIF+GG
Sbjct: 70  YMGMLATVINGLALRDALEKLGLKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGG 129

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
            GNPFFTTDT AALRA EI A++ILK T VDG+Y +DP K   A  Y  IT++E + K L
Sbjct: 130 TGNPFFTTDTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKYDTITYNEALKKNL 189

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           ++MD TAF+  RD  LPI VF+I K GALK+VI GK  GTLV
Sbjct: 190 KVMDLTAFALARDNNLPIVVFNIDKPGALKKVILGKGIGTLV 231

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232

>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

 Score =  286 bits (734), Expect = 6e-90
 Identities = 113/223 (50%), Positives = 160/223 (71%), Gaps = 1/223 (0%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL  G+   I+  ++K I  EI E+V  G+E+AIV+GGGNI RG     + + R+TAD
Sbjct: 8   GEALA-GEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATAD 66

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           Y+GMLAT++N+LAL D L K G+ + VMSAI ++   E YI   AI++LE+G++VIF GG
Sbjct: 67  YIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGG 126

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
            GNP FTTDT AALRA EI A+++LKAT VDG+Y++DP K   A  Y +I++DE++ K L
Sbjct: 127 TGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL 186

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822
           ++MD+TA + CR  K+PI VF+ +K G L R ++G++ GTL+ 
Sbjct: 187 KVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229

>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism]

 Score =  286 bits (733), Expect = 1e-89
 Identities = 114/223 (51%), Positives = 156/223 (69%), Gaps = 1/223 (0%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL     + I+  ++  I +EI E+V  G+E+A+V+GGGNI RG       +DR TAD
Sbjct: 14  GEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTAD 73

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           YMGMLAT++N+LAL D L + G+ + V SAI++ +  E Y    AI++LE+G+VVIF GG
Sbjct: 74  YMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGG 133

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKAT-KVDGIYNSDPNKCLSAIIYKKITFDEVISKK 778
            GNP FTTDT AALRA EI+A+++LKAT KVDG+Y++DP K   A  Y  +T+DEV+   
Sbjct: 134 TGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIG 193

Query: 779 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           L++MD TAFS  RD  +PI VF+I K G LKR ++G+  GT+V
Sbjct: 194 LKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIV 236

Length = 238

>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type

 Score =  283 bits (727), Expect = 6e-89
 Identities = 112/218 (51%), Positives = 160/218 (73%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
            +++AGVHFGHQTR WNPKM  +IFG RN IHII+L+KTL + ++A  ++  +  + G +
Sbjct: 6   DLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKI 65

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTK+QA+ +I  EA R GM +++QRWLGG+LTNFKTI+ SI++LK+++    +G+  
Sbjct: 66  LFVGTKKQAKEIIKEEAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFD 125

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
            L+KKEAL+  R++ KL + +GGIK+M  +PD +F+ID    K AV+EA KL IP++ +V
Sbjct: 126 DLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVKEKIAVAEARKLGIPVVAIV 185

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           DTN  PD ++Y IPGNDD+ +SI L T  I DA L+ K
Sbjct: 186 DTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK 223

This model describes the bacterial, ribosomal, and chloroplast forms of ribosomal protein S2. TIGR01012 describes the archaeal and cytosolic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 225

>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2

 Score =  265 bits (681), Expect = 9e-83
 Identities = 109/216 (50%), Positives = 141/216 (65%), Gaps = 12/216 (5%)

Query: 177 MQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLF 236
           ++AGVHFGHQTR WNPKM  YI+G RN IHII+LEKTL    KA  +I ++    G +LF
Sbjct: 2   LEAGVHFGHQTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRKAANFIKEIAAKGGKILF 61

Query: 237 VGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKL 296
           VGTK+QA+  +   A R G  +++ RWLGG LTN+KTIK SI+RL+E            L
Sbjct: 62  VGTKKQAQEAVKKFAKRTGQFYVNGRWLGGTLTNWKTIKKSIKRLEE------------L 109

Query: 297 SKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDT 356
           SKKEAL   R+  KL + +GGIKNM  +PD + ++D      A+ EA KL IP+I +VDT
Sbjct: 110 SKKEALKLKRELEKLEKYLGGIKNMKKLPDLVIVVDPNKEHIAIKEASKLGIPVIAIVDT 169

Query: 357 NHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           N  PD I+Y IPGNDDS +SIAL    +  A L+ +
Sbjct: 170 NCDPDLIDYPIPGNDDSIRSIALILWLLARAILEGR 205

Length = 205

>gnl|CDD|236491 PRK09377, tsf, elongation factor Ts; Provisional

 Score =  251 bits (645), Expect = 2e-76
 Identities = 89/213 (41%), Positives = 130/213 (61%), Gaps = 4/213 (1%)

Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAI 449
            A  V ELR +T A +M+CKKAL EA+G + KA E LR K   K    + R A +G++A 
Sbjct: 5   TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAA 64

Query: 450 YISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVD 509
            +    G LVE+N ETDFVAKN +F   + ++A+      P +++ L  LK+     TV+
Sbjct: 65  KVDGNKGVLVEVNSETDFVAKNEDFQALANEVAEAALAAKPADVEALLALKLDG--GTVE 122

Query: 510 EKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGDNESAVKDVAMHI 567
           E   ELI++IGENI +RRF   + +  ++ SYLH   +IGV+V   G +E   KD+AMHI
Sbjct: 123 EARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDEELAKDIAMHI 182

Query: 568 AAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 600
           AAM P  LS + +P +++EKE  +A  +A++ G
Sbjct: 183 AAMNPEYLSREDVPAEVVEKEREIAKEQAKEEG 215

Length = 290

>gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion protein; Provisional

 Score =  246 bits (631), Expect = 6e-74
 Identities = 103/216 (47%), Positives = 149/216 (68%)

Query: 175 KIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 234
           ++++AGVHFGHQ+  WNPKM+ YIFG RN IHII+L +T+ +  +A++ +       G +
Sbjct: 3   QLLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRV 62

Query: 235 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 294
           LFVGTKRQA+  +A+ A R+   F++ RWLGG LTN+KTI  SIQRL+++D  +++G   
Sbjct: 63  LFVGTKRQAQDAVADAAKRSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEAN 122

Query: 295 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 354
             +KKE L   R++ KL+R +GGIK+M  +PD +F+ID      A+ EA +L IP+  +V
Sbjct: 123 GYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIV 182

Query: 355 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 390
           DTN  PDGI Y +PGNDD+ ++IALY   I  A +D
Sbjct: 183 DTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAID 218

Length = 326

>gnl|CDD|178850 PRK00083, frr, ribosome recycling factor; Reviewed

 Score =  229 bits (588), Expect = 7e-70
 Identities = 88/183 (48%), Positives = 132/183 (72%)

Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            I++I K+ +++M   ++ LK  L K+RTGRAN  +LD I+V Y+   T L ++A+I++  
Sbjct: 2    INEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPE 61

Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
            + T+ IQP++K M   I+KAI  ++LGLNP+  G +I + IPPLT+ERR+E+VK +K   
Sbjct: 62   ARTLLIQPWDKSMLKAIEKAIRASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEA 121

Query: 949  EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            EE K++IR IRRD+N+ LKKL K+K +S D   RA+ +IQKLTDK+I +I++LL  KEKE
Sbjct: 122  EEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELLAAKEKE 181

Query: 1009 ILT 1011
            I+ 
Sbjct: 182  IME 184

Length = 185

>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome

 Score =  228 bits (584), Expect = 3e-69
 Identities = 95/211 (45%), Positives = 127/211 (60%), Gaps = 22/211 (10%)

Query: 179 AGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVG 238
           AGVH GH+TR WNPKM  YI+G RN IHII+LEKTL     A+ +I  +    G +LFVG
Sbjct: 4   AGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVG 63

Query: 239 TKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSK 298
           TK QA+  +   A R G  +++ RWLGG LTN+KTI+ SI+RLK+++             
Sbjct: 64  TKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLE------------- 110

Query: 299 KEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNH 358
                    + KL + +GGIK+M  +PD + ++D      A+ EA KL IP+I +VDTN 
Sbjct: 111 ---------KEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161

Query: 359 SPDGINYVIPGNDDSAKSIALYTKGIVDAFL 389
            PD I+Y IP NDDS +SIAL    +  A L
Sbjct: 162 DPDLIDYPIPANDDSIRSIALILWLLARAIL 192

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane and subsequent signalling events, and has been linked to several diseases. Some evidence also suggests that the precursor of 67LR, 37LRP is also present in the nucleus in animals, where it appears associated with histones. Length = 193

>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2

 Score =  223 bits (570), Expect = 1e-66
 Identities = 93/218 (42%), Positives = 135/218 (61%), Gaps = 4/218 (1%)

Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           E++++AGVHFGHQTR WNPKM+ YI+  RN IHIINL +T     +A   ++        
Sbjct: 11  EEMLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKK 70

Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
            LFVGTK+QA  ++A+ A+RA   ++++RWLGG+LTN+ T KT +Q+L+++ +    G  
Sbjct: 71  FLFVGTKKQAADLVASAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLF 130

Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            +L KKEA +  R+  +L + +GGIK M  +PD + IID      A+ E  KL IP I +
Sbjct: 131 NRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVIIIDQQEEYTALRECRKLGIPTISI 190

Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDA 391
           +DTN  PD  +  IP NDD+  SI L    I++    A
Sbjct: 191 LDTNCDPDLADIPIPANDDAIASIKL----ILNKLTTA 224

Length = 230

>gnl|CDD|223342 COG0264, Tsf, Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

 Score =  221 bits (565), Expect = 4e-65
 Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 7/216 (3%)

Query: 391 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 450
           A  V ELR KT A +M+CKKAL EANG + KA E LR K   K    + R A +G+IA  
Sbjct: 6   AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAK 65

Query: 451 ISE--KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTV 508
           +    K   LVE+NCETDFVAKN EF + + KIAK   E  P ++++L          TV
Sbjct: 66  VDGDGKKAVLVEVNCETDFVAKNAEFQELANKIAKAALEKKPADVEELKAAFE-PGGKTV 124

Query: 509 DEKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGDNES--AVKDVA 564
           +E+   LI++IGENI +RRF + +  + ++ SYLH N +IGV+V   G        KD+A
Sbjct: 125 EEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNGRIGVLVALKGGAADEELAKDIA 184

Query: 565 MHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 600
           MHIAAM P  LS + +P +++EKE  + + + +  G
Sbjct: 185 MHIAAMNPQYLSREDVPAEVVEKEREIFLAQLKAEG 220

Length = 296

>gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

 Score =  211 bits (540), Expect = 3e-63
 Identities = 88/186 (47%), Positives = 136/186 (73%)

Query: 826  IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANIT 885
            +M+I++I K+ ++KM   ++ LK  L K+RTGRAN  +LD I V+Y+   T L ++A+I+
Sbjct: 1    MMMINEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASIS 60

Query: 886  LFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIK 945
            +  + T+ I+PF+K M   I+KAI  +NLGLNP   GN+I V +PPLT+ERR+E+VK+ K
Sbjct: 61   VPEARTLVIKPFDKSMVKAIEKAILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAK 120

Query: 946  NITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 1005
               EE K+++R IRRD+N+ +KKL K+K +S D   +A+ +IQKLTD++I +I++LL +K
Sbjct: 121  KYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELLKDK 180

Query: 1006 EKEILT 1011
            EKEI+ 
Sbjct: 181  EKEIME 186

Length = 187

>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional

 Score =  205 bits (524), Expect = 2e-60
 Identities = 96/226 (42%), Positives = 137/226 (60%), Gaps = 10/226 (4%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL        +   +  +++EI  +V  G ++ IVIG GN+ RG+  +++ +  + AD
Sbjct: 9   GEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGV--ELKELSPTRAD 66

Query: 660 YMGMLATIINSLALFDILNKSG----IISHVMSAISIEKFLESYIPLNAIKYLEEGKVVI 715
            +GML T+IN+L L DI  KSG    I+S +++  S+E      I L    Y   G +VI
Sbjct: 67  QIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIEL----YFRAGYIVI 122

Query: 716 FAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI 775
           FAGG  NPFFTTDT AALRA E+KA+I++KATKVDGIY+ DP K   A     +TF E I
Sbjct: 123 FAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAI 182

Query: 776 SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
              L++MD+ AFS C+   + I V +  + G L + ++G+N GTLV
Sbjct: 183 KMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228

Length = 231

>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor

 Score =  199 bits (508), Expect = 4e-59
 Identities = 82/164 (50%), Positives = 119/164 (72%)

Query: 847  LKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIK 906
            LK+ L K+RTGRAN  +LD I+V Y+   T L ++A+I++  + T+ I P++K +   I+
Sbjct: 2    LKKELSKIRTGRANPSLLDGIRVDYYGSPTPLNQLASISVPEARTLLITPWDKSLIKAIE 61

Query: 907  KAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENL 966
            KAI  ++LGLNP   G +I + IPPLT+ERR+E+VK  K + EE K++IR IRRD+N+ L
Sbjct: 62   KAILASDLGLNPQNDGQVIRIPIPPLTEERRKELVKQAKKLAEEAKVAIRNIRRDANDKL 121

Query: 967  KKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 1010
            KKL K+K +S D   RA+ +IQKLTDK+I +I++LL  KEKEI+
Sbjct: 122  KKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEKEIM 165

The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis. Length = 165

>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional

 Score =  191 bits (485), Expect = 7e-55
 Identities = 103/223 (46%), Positives = 143/223 (64%), Gaps = 1/223 (0%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQN-IDRSTA 658
           GE+L     + IN    + II++I  + + G+ELA+V+GGGNI RG      N I R+TA
Sbjct: 24  GESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATA 83

Query: 659 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 718
           D MGM+AT+IN+LAL D+L   G+ + V SA  ++  L+        + L +G+V+IFAG
Sbjct: 84  DSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAG 143

Query: 719 GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 778
           G GNPF TTDTTA+LRA EI A+ +LKAT V+G+Y+ DPNK   A  + K+TF EV+SK+
Sbjct: 144 GTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKE 203

Query: 779 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           L +MD  AF+ CRD  +PI VF + +  AL   +     GT V
Sbjct: 204 LNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWV 246

Length = 249

>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF)

 Score =  183 bits (466), Expect = 3e-53
 Identities = 88/179 (49%), Positives = 128/179 (71%)

Query: 832  IKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHT 891
            I K  K+KM  +++ LKE L K+RTGRAN  +LD+I V+Y+   T L ++A+I++    T
Sbjct: 1    ILKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRT 60

Query: 892  ISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEET 951
            I I PF+K     I+KAI  ++LGLNP   G +I V++PPLT+ERR+E+VK  K I EE 
Sbjct: 61   IVINPFDKSAIKAIEKAILNSDLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEA 120

Query: 952  KISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 1010
            K++IR IRRD+N+ +KKL K K +S D   +A+ D+QKLTD++I +I++LL +KEKE+L
Sbjct: 121  KVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKELL 179

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. Length = 179

>gnl|CDD|129587 TIGR00496, frr, ribosome recycling factor

 Score =  170 bits (432), Expect = 1e-48
 Identities = 82/175 (46%), Positives = 129/175 (73%)

Query: 837  KQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQP 896
            K++M  +I+ LK  L K+RTGRAN  +LD I V+Y+   T L ++A++T+ ++ T+ IQP
Sbjct: 1    KERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQP 60

Query: 897  FEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIR 956
            F+K   + I+KAI  ++LGLNP   G++I V+ PPLT+ERR+E+VK  K I E+ K+++R
Sbjct: 61   FDKSNINAIEKAIQRSDLGLNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVR 120

Query: 957  KIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILT 1011
             +RRD+N+ +KKL K+K +S D E R Q +IQKLTD++I +I+++L +KEKE++ 
Sbjct: 121  NVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEILKDKEKELME 175

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily [Protein synthesis, Translation factors]. Length = 176

>gnl|CDD|236537 PRK09481, sspA, stringent starvation protein A; Provisional

 Score =  165 bits (419), Expect = 2e-46
 Identities = 76/179 (42%), Positives = 110/179 (61%), Gaps = 5/179 (2%)

Query: 3   FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLM 62
            EI  ++  N P ++  +NPY  VP LV+R+L LYES II EY+DERFP+P LM   P+ 
Sbjct: 36  VEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVA 95

Query: 63  RARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLG 122
           R  +RLM+   EK+     Y L N+    S      AR+++R+ L+ +AP+F +  Y + 
Sbjct: 96  RGESRLMMHRIEKD----WYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMS 151

Query: 123 DEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFSRPSYMESLTPAEKIMQAG 180
           +EFS++D  +APLLWRL   GI LS   +  +K Y  R+F R S++ SLT AE+ M+ G
Sbjct: 152 EEFSLVDCYLAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLG 210

Length = 211

>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional

 Score =  164 bits (417), Expect = 8e-46
 Identities = 92/234 (39%), Positives = 141/234 (60%), Gaps = 2/234 (0%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           G AL      + NS  +++I +EI  IV  GIE++IVIGGGNI RG   +   IDR  AD
Sbjct: 13  GGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEAD 72

Query: 660 YMGMLATIINSLALFDIL-NKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 718
            +G L TIINSL L  +L +K+     VM++I      E YI L A+ +L+ G +VIF G
Sbjct: 73  NIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGG 132

Query: 719 GIGNPFFTTDTTAALRAAEIKAEIILKATK-VDGIYNSDPNKCLSAIIYKKITFDEVISK 777
           G G PF TTD  +  RA E+ ++ IL A + VDG++ SDP    SA +Y+K+ +++V+ +
Sbjct: 133 GNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ 192

Query: 778 KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISD 831
            +++MD  A    RD  LP  VF+  + G ++R+  G++ GTL+ +   +++ +
Sbjct: 193 NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDASLLVHE 246

Length = 247

>gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts

 Score =  158 bits (401), Expect = 4e-43
 Identities = 83/218 (38%), Positives = 125/218 (57%), Gaps = 13/218 (5%)

Query: 391 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNAKDGV 446
           A+ V ELR +T A +M+CKKAL+EANG   KA + LR     K  KK     +R A +GV
Sbjct: 6   AQLVKELRERTGAGMMDCKKALVEANGDFEKAIKWLREKGIAKAAKKA----DRVAAEGV 61

Query: 447 IAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLL 506
           I +        +VE+N ETDFVAKN  F +F+ K+   +  N    L++L   +++N   
Sbjct: 62  IVLKSDNHKAVIVEVNSETDFVAKNEGFKEFANKLLDELKANPITTLEELQKQELENK-- 119

Query: 507 TVDEKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGD-NESAVKDV 563
              E    L ++IGENI +RR  + +  +N+I SYLH N +IGV+VE  G  +E   K +
Sbjct: 120 EKVEYLASLAAKIGENIVLRRVAVLEGQSNVIFSYLHANARIGVLVELKGKADEELAKHL 179

Query: 564 AMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 601
           AMH+AA KP  +  D + ++ ++KE  +   +A+  G+
Sbjct: 180 AMHVAANKPQFIDQDDVSQEWVKKERQIITDQAELSGK 217

Translational elongation factor Ts (EF-Ts) catalyzes the exchange of GTP for the GDP of the EF-Tu.GDP complex as part of the cycle of translation elongation. This protein is found in Bacteria, mitochondria, and chloroplasts [Protein synthesis, Translation factors]. Length = 291

>gnl|CDD|198295 cd03186, GST_C_SspA, C-terminal, alpha helical domain of Stringent starvation protein A

 Score =  132 bits (333), Expect = 3e-36
 Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 3/111 (2%)

Query: 60  PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKY 119
           P+ RAR+RLM+   E++ +  L  + N R++   K  ++AR+E+R+ L  LAP+F  + Y
Sbjct: 1   PVSRARSRLMMHRIEQDWYPLLDTILNGRDE---KEAEKARKELRESLTALAPVFAASPY 57

Query: 120 MLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
            L +EFS++D  +APLLWRL   GI L K A  +  Y ER+F+R S+  SL
Sbjct: 58  FLSEEFSLVDCYLAPLLWRLPALGIELPKQAKAIKDYMERVFARDSFQASL 108

Glutathione S-transferase (GST) C-terminal domain family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis. Length = 108

>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed

 Score =  123 bits (310), Expect = 6e-32
 Identities = 70/195 (35%), Positives = 90/195 (46%), Gaps = 56/195 (28%)

Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNAKDG 445
            AK V ELR KT A +M+CKKAL EANG + KA E LR     K  KK    + R A +G
Sbjct: 4   TAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKK----AGRVAAEG 59

Query: 446 VIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP------------- 490
           ++  YI    ++G LVE+NCETDFVA+  EF + +K IA  I    P             
Sbjct: 60  LVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVI 119

Query: 491 -----INLDQLNNLK----------------------------IKNNLLTVDEKCKELIS 517
                I   Q  N                              IK+   TV++  KE I+
Sbjct: 120 EKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFIKDPSKTVEDLIKEAIA 179

Query: 518 RIGENIKIRRFKLFK 532
           +IGENI +RRF  F+
Sbjct: 180 KIGENIVVRRFARFE 194

Length = 198

>gnl|CDD|223698 COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

 Score =  122 bits (308), Expect = 1e-31
 Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 12/188 (6%)

Query: 2   DFEIRDIDLF--NKPDNIFRMNPYGQVPILVERDL-ILYESNIINEYIDERFPYPQLMSS 58
            +EI  +DL    KP +   +NP G+VP LV+ D  +L ES  I EY+ ER+P P L+ +
Sbjct: 25  PYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPA 84

Query: 59  DPLMR-ARARLMLLNFEKEIFIHLYMLENERNKTSIKGY------KRAREEIRDRLITLA 111
           DPL R ARA L+   F     +H  + +  R     +        + AR EIR  L  L 
Sbjct: 85  DPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLE 144

Query: 112 PLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
            L     Y+ GD F++ D+ +APLLWRL   G  L+     L  + ER+ +RP++  ++ 
Sbjct: 145 ALLADGPYLAGDRFTIADIALAPLLWRLALLGEELADYP-ALKAWYERVLARPAFR-AVQ 202

Query: 172 PAEKIMQA 179
            A +    
Sbjct: 203 EALEGEAL 210

Length = 211

>gnl|CDD|214362 CHL00098, tsf, elongation factor Ts

 Score =  111 bits (279), Expect = 1e-27
 Identities = 73/191 (38%), Positives = 91/191 (47%), Gaps = 49/191 (25%)

Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAI 449
            A+ V ELR KT A +M+CKKAL EANG   KA E LR K        S R   +G+I  
Sbjct: 1   SAELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIES 60

Query: 450 YI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLI----------TENTP------- 490
           YI    K+G LVEINCETDFVA+  EF K +K IA  I           E+ P       
Sbjct: 61  YIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLE 120

Query: 491 ----INLDQLNN-----------------LK---------IKNNLLTVDEKCKELISRIG 520
                  D L N                 LK         I++  +TV+E  K+ I+++G
Sbjct: 121 KKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFIRDQSITVEELIKQNIAKLG 180

Query: 521 ENIKIRRFKLF 531
           ENI+IRRF  F
Sbjct: 181 ENIQIRRFARF 191

Length = 200

>gnl|CDD|239357 cd03059, GST_N_SspA, GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

 Score = 90.5 bits (225), Expect = 5e-22
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query: 1  MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50
          +  EI D+D  N P+++  +NPYG VP LV+RDL+LYES II EY+DERF
Sbjct: 24 VSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis. Length = 73

>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

 Score = 94.8 bits (236), Expect = 1e-21
 Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 30/235 (12%)

Query: 616 IKNIISEISEIVSCGIELAIVIGGGN-----ICR-GISNKIQNIDRST---ADYMGMLAT 666
           ++N+   + ++ S G  + +V G G      +   G         R T    D +  +  
Sbjct: 15  LRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGE 74

Query: 667 IINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI---------KYLEEGKVVIFA 717
            +++L +   L + GI +  +          +   +  I           LE G + I +
Sbjct: 75  GMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILS 134

Query: 718 GGIG--------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKI 769
           G  G             +D+TAAL AA +KA+ ++  T VDG+Y +DP K   A +  ++
Sbjct: 135 GFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSEL 194

Query: 770 TFDEV---ISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           T++E          ++   A        +P+R+ +    GAL  +      GTL+
Sbjct: 195 TYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248

>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family

 Score = 93.6 bits (233), Expect = 2e-21
 Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 27/217 (12%)

Query: 612 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 671
           +   IK +  EI+++++ GI++ +V GGG     +               G    ++ + 
Sbjct: 14  DKDEIKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYGIEAGFVRHTAGATGLVLEAQ 73

Query: 672 ALFDILNKSG---------IISHVMSAISIEKFLESYIPLNAI-KYLEEGKVVIFAGGIG 721
              ++               ++ ++S   +       +   AI + LE G V +  G  G
Sbjct: 74  LAAELNRIVVSLGERLGARAVALLLSDGGLPAVRLDLVDTEAIKELLEAGVVPVITGFGG 133

Query: 722 N---------PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD 772
                        ++DT AAL A  + A+ ++  T VDG+Y +DP K   A +  ++++D
Sbjct: 134 ENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKNPDAKLIPELSYD 193

Query: 773 EV--------ISKKLEIMDSTAFSFCRDQKLPIRVFS 801
           E         ++  +++    A    R   +P+ + +
Sbjct: 194 EAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230

>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 32/218 (14%)

Query: 616 IKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRSTADYMGMLATIINSLA 672
             N++ +IS+    G ++A+V+GGG + R    ++ K+     +  D +G++AT +N+  
Sbjct: 23  YANVLRKISD----GHKVAVVVGGGRLAREYISVARKL-GASEAFLDEIGIMATRLNARL 77

Query: 673 LFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAA 732
           L   L  +                 SY    A++ +  GK+V+  GG   P  +TD  AA
Sbjct: 78  LIAALGDA-----------YPPVPTSYEE--ALEAMFTGKIVV-MGGT-EPGQSTDAVAA 122

Query: 733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE----VISKKL-----EIMD 783
           L A  + A++++ AT VDG+Y+ DP K   A  + +++ DE    V          E  D
Sbjct: 123 LLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFD 182

Query: 784 STAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
             A        +   V        L+R ++G+  GT++
Sbjct: 183 PLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221

>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 31/218 (14%)

Query: 616 IKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRSTADYMGMLATIINSLA 672
             NI+ ++S+      ++ +V+GGG   R   G++ ++     +  D +G+ AT +N++ 
Sbjct: 22  FANILRKLSD----EHKVGVVVGGGKTARRYIGVAREL-GASETFLDEIGIDATRLNAML 76

Query: 673 LFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAA 732
           L   L          +               A++ +  GK+V+  GG  +P  TTD  AA
Sbjct: 77  LIAALGDDAYPKVPEN------------FEEALEAMSLGKIVV-MGGT-HPGHTTDAVAA 122

Query: 733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE----VISKKL-----EIMD 783
           L A   KA++++ AT VDG+Y+ DP K   A  + K+T +E    V S  +     E++D
Sbjct: 123 LLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVD 182

Query: 784 STAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
             A       K+   V +      L++V++G++ GT++
Sbjct: 183 PLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221

>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS

 Score = 69.0 bits (170), Expect = 8e-14
 Identities = 23/41 (56%), Positives = 31/41 (75%)

Query: 442 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIA 482
           A +G++A+YI    G LVE+NCETDFVAKN +F + +K IA
Sbjct: 1   AAEGLVAVYIDGNKGVLVEVNCETDFVAKNEKFQELAKDIA 41

Length = 134

>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 539 SYLHDNKIGVIVEYN------GDNES---AVKDVAMHIAAMKPIALSSDQIPKKIIEKEY 589
            Y+  NK GV+VE N        NE      KD+AMHIAAM P  LS D +P +++EKE 
Sbjct: 8   VYIDGNK-GVLVEVNCETDFVAKNEKFQELAKDIAMHIAAMNPQYLSRDDVPAEVLEKER 66

Query: 590 SLAVLKAQQLG 600
            +   +A++ G
Sbjct: 67  EILKAQAKEEG 77

Length = 134

>gnl|CDD|185068 PRK15113, PRK15113, glutathione S-transferase; Provisional

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 44/189 (23%)

Query: 2   DFEIRDIDLFNKPDNIFRMNPYGQ------VPILVERDLILYESNIINEYIDERFP---Y 52
            FE++ +DL +  ++      Y        VP L   D  L ES+ I EY++ERF    +
Sbjct: 32  PFELKTVDL-DAGEH--LQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAW 88

Query: 53  PQLMSSDPLMRARAR---------LMLLNFEKEIFIHLYMLENERNKTSIKGYKRAR--- 100
            ++  +D   RARAR         LM              L  ER    +    +     
Sbjct: 89  ERIYPADLQARARARQIQAWLRSDLM-------------PLREERPTDVVFAGAKKAPLS 135

Query: 101 EEIR---DRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKY 156
           E  +   ++L  +A   L   +  L  E+ + D  +A +L RL  +G  +      L  Y
Sbjct: 136 EAGKAAAEKLFAVAERLLAPGQPNLFGEWCIADTDLALMLNRLVLHGDEVP---ERLADY 192

Query: 157 AERIFSRPS 165
           A   + R S
Sbjct: 193 ATFQWQRAS 201

Length = 214

>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 22/129 (17%)

Query: 705 IKYLEEGKVVIFAG--GI-GNPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 755
           ++ LEEG VV+ AG  G+  +   TT      DTTA   AA +KA+     T VDG+Y +
Sbjct: 120 LEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTA 179

Query: 756 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
           DP     A     I++DE++   S   +++   +    +   +P+RV S           
Sbjct: 180 DPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFS-------- 231

Query: 813 EGKNEGTLV 821
             +N GTL+
Sbjct: 232 --ENPGTLI 238

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239

>gnl|CDD|205595 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain

 Score = 58.7 bits (143), Expect = 6e-11
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 2  DFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53
           +E  ++   +KP  +  +NP G+VP+LV+   +L +S  I EY++E FP P
Sbjct: 23 PYEEVEVPPGDKPPELLALNPLGKVPVLVDDGEVLTDSLAIIEYLEELFPGP 74

Length = 75

>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

 Score = 61.4 bits (150), Expect = 3e-10
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 26/131 (19%)

Query: 705 IKYLEEGKVVIFAG--GI---GNPFFTT------DTTAALRAAEIKAEIILKATKVDGIY 753
            + LEEG VVI AG  GI   G+   TT      DT+A   AA + A+     T VDG+Y
Sbjct: 120 RELLEEGDVVIVAGFQGINEDGD--ITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVY 177

Query: 754 NSDPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR 810
            +DP     A    +I++DE++   S   +++   +    +   +P+RV S         
Sbjct: 178 TADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFS------ 231

Query: 811 VIEGKNEGTLV 821
               +  GTL+
Sbjct: 232 ----EEPGTLI 238

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239

>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed

 Score = 59.1 bits (144), Expect = 9e-10
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 13/80 (16%)

Query: 533 TNNNLI-SYLHDN-KIGVIVEYN--------GDN-ESAVKDVAMHIAAMKPIALSSDQIP 581
               L+ SY+H   +IGV+VE N         +  +   KD+AM IAA  P  +S + +P
Sbjct: 56  AAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVP 115

Query: 582 KKIIEKEYSLAVLKAQQLGE 601
            ++IEKE    + +AQ L E
Sbjct: 116 AEVIEKE--KEIYRAQALNE 133

Length = 198

>gnl|CDD|233333 TIGR01262, maiA, maleylacetoacetate isomerase

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 33/156 (21%)

Query: 19  RMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARAR----------- 67
            +NP G VP L     +L +S  I EY++E +P P L+ +DP+ RAR R           
Sbjct: 45  ALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPADPIKRARVRALALLIACDIH 104

Query: 68  ----LMLLNFEKEIFIHLYMLENERN---KTSI-KGYKRAREEIRDRLITLAPLFLKNKY 119
               L +L + +E        E  RN   +  I KG+      ++              +
Sbjct: 105 PLNNLRVLQYLREKLGV---EEEARNRWYQHWISKGFAALEALLQPH---------AGAF 152

Query: 120 MLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK 155
            +GD  ++ D+ + P ++  + +G++L  +  P ++
Sbjct: 153 CVGDTPTLADLCLVPQVYNAERFGVDL--TPYPTLR 186

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism [Energy metabolism, Amino acids and amines]. Length = 210

>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal)

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 51/213 (23%)

Query: 168 ESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNK-IHIINLEKTLYMYEKAIRYIYQ 226
           E L P +  + AGVH G Q +     M  +I+  R+  +++++L KT      A +++ +
Sbjct: 1   EYLVPVDMYLAAGVHIGTQNK--TFDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVR 58

Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
                  +L V  +   +  +   A   G   I  R+  G  TN           K    
Sbjct: 59  --IEPQDILVVSARIYGQKPVLKFAKYTGARAIAGRFTPGTFTN--------PMQKS--- 105

Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
                             +R+                 P+ + + D      AV EA ++
Sbjct: 106 ------------------FRE-----------------PEVVVVTDPRADHQAVKEASEV 130

Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
            IPI+ + DT++    ++ VIP N+   +S+AL
Sbjct: 131 GIPIVALCDTDNPLRYVDLVIPTNNKGRRSLAL 163

This model describes the ribosomal protein of the cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. TIGR01011 describes the related protein of organelles and bacteria [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 196

>gnl|CDD|238319 cd00570, GST_N_family, Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 2  DFEIRDIDLFNKPDNIFR-MNPYGQVPILVERDLILYESNIINEYID 47
           +E+  +DL       F  +NP G+VP+L +  L+L ES  I EY+ 
Sbjct: 25 PYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxin 2 and stringent starvation protein A. Length = 71

>gnl|CDD|222111 pfam13410, GST_C_2, Glutathione S-transferase, C-terminal domain

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 96  YKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD--YYGINLSKSASPL 153
            +RA  ++   L  L        Y+LGD  S+ D+ +AP L RLD    G++L      L
Sbjct: 4   LERALAQLERALDALEERLADGPYLLGDRPSLADIALAPALARLDFRGPGLDLRAGYPNL 63

Query: 154 IKYAER 159
             + ER
Sbjct: 64  RAWLER 69

This domain is closely related to pfam00043. Length = 69

>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 12/108 (11%)

Query: 706 KYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSD 756
             LEEG + + AG  G       TT      D TAAL AA +KA+     T VDGIY +D
Sbjct: 163 PLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTD 222

Query: 757 PNKCLSAIIYKKITFDE---VISKKLEIMDSTAFSFCRDQKLPIRVFS 801
           P     A    +I+++E   + S   +++           K+PI V S
Sbjct: 223 PRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKS 270

Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441

>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class

 Score = 55.5 bits (134), Expect = 8e-08
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 708 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 758
           LEEG +V+ AG  G     + TT      D TAAL AA +KA+ +   T V G+Y +DP 
Sbjct: 126 LEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPR 185

Query: 759 KCLSAIIYKKITFDE---VISKKLEIMDSTAFSFCRDQKLPIRVFS 801
              +A    KI+++E   + +   +++            +PI V S
Sbjct: 186 VVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRS 231

This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401

>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 325 PDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 379
           PD + + D      AV EAI++ IP++ + DT++    ++ VIP N+   K++AL
Sbjct: 115 PDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALAL 169

Length = 204

>gnl|CDD|239351 cd03053, GST_N_Phi, GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 2  DFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER 49
          D+E+  +DL    +K       NP+GQ+P L + DL L+ES  I  Y+ E+
Sbjct: 26 DYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including transport of flavonoid pigments to the vacuole, shoot regeneration and GSH peroxidase activity. Length = 76

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 30/161 (18%)

Query: 705 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 755
           ++ LEEGKV + AG  G   +   TT      D +AA  AA + A+ +   T VDG+Y +
Sbjct: 168 LRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTA 227

Query: 756 DPNKCLSAIIYKKITFDEVI------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK 809
           DP     A +  +I+++E +      +K L      A        +P+R+         K
Sbjct: 228 DPRIVPDARLLPEISYEEALELAYLGAKVLHP---RAVEPAMRSGIPLRI---------K 275

Query: 810 RVIEGKNEGTLVYEIYIM---IISDIKKNTKQKMLNTIKIL 847
                   GTL+         ++  I  +    ++      
Sbjct: 276 NTFNPDAPGTLITAETESDEPVVKGIALDDNVALITVSGPG 316

Length = 447

>gnl|CDD|239353 cd03055, GST_N_Omega, GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 4  EIRDIDLFNKPDNIFRMNPYGQVPIL-VERDLILYESNIINEYID 47
          E+ +I+L +KPD     NP G+VP L ++   ++YES II EY+D
Sbjct: 45 EVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega GST genes may be associated with the development of some types of cancer and the age-at-onset of both Alzheimer's and Parkinson's diseases. Length = 89

>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

 Score = 51.3 bits (124), Expect = 5e-07
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 12/105 (11%)

Query: 709 EEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 759
           E GKV +  G IG   +   TT      D +AA  AA + A+ +   T VDGIY +DP  
Sbjct: 111 EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170

Query: 760 CLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFS 801
              A +  +I++DE +       +++   A    R   +PIRV +
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKN 215

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227

>gnl|CDD|239356 cd03058, GST_N_Tau, GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 2  DFEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERF 50
           +E  + DL NK + +   NP + ++P+L+     + ES II EYIDE +
Sbjct: 25 PYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin, responses to soil stresses and responses to auxin and cytokinin hormones. Length = 74

>gnl|CDD|166458 PLN02817, PLN02817, glutathione dehydrogenase (ascorbate)

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 44/198 (22%), Positives = 96/198 (48%), Gaps = 30/198 (15%)

Query: 3   FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLM 62
           ++++ +DL NKP+   +++P G+VP++   +  + +S++I + ++E++P P L +  P  
Sbjct: 90  YDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLAT--PPE 147

Query: 63  RARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN-KYML 121
           +A     + +     FI        ++K    G ++A   + D L +      +N  ++ 
Sbjct: 148 KASVGSKIFS----TFIGFL-----KSKDPGDGTEQA---LLDELTSFDDYIKENGPFIN 195

Query: 122 GDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKI 176
           G++ S  D+ + P L+ L+     Y   ++  S   +  Y + IFS  S++++    E +
Sbjct: 196 GEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDV 255

Query: 177 MQAGVHFGHQTRFWNPKM 194
           + AG         W PK+
Sbjct: 256 I-AG---------WRPKV 263

Length = 265

>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 18/126 (14%)

Query: 667 IINSLALFDILNKSGIISHVMSA-----ISIEKFLESYI----PLNAIKYLEEGKVVIFA 717
           II+++ L   L   G+ +  ++      ++ + +  + I    P   +  L+EG VV+ A
Sbjct: 78  IISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVA 137

Query: 718 GGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKK 768
           G  G   +   TT      DTTAA   A + AE +   T VDGI  +DP    +A I   
Sbjct: 138 GFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDV 197

Query: 769 ITFDEV 774
           ++++EV
Sbjct: 198 VSYNEV 203

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244

>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed

 Score = 51.8 bits (125), Expect = 1e-06
 Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 18/126 (14%)

Query: 667 IINSLALFDILNKSGIISHVMSA-----ISIEKFLESYI----PLNAIKYLEEGKVVIFA 717
           II+S+   ++LN++GI +  ++      I+ + F  + I    P   ++ LEEG VV+ A
Sbjct: 80  IISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVA 139

Query: 718 GGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKK 768
           G  G   N   TT      DTTAA     +KAE +   T VDGI  +DP     A +   
Sbjct: 140 GFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDV 199

Query: 769 ITFDEV 774
           ++++EV
Sbjct: 200 VSYNEV 205

Length = 403

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score = 49.3 bits (119), Expect = 6e-06
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 38/136 (27%)

Query: 706 KYLEEGKVVIFAG--GI---GNPFFTT------DTTAALRAAEIKA---EIILKATKVDG 751
           + L+EG VV+ AG  G+   G    TT      DTTA   AA +KA   EI    T VDG
Sbjct: 123 EALDEGDVVVVAGFQGVDEDGE--ITTLGRGGSDTTAVALAAALKADECEIY---TDVDG 177

Query: 752 IYNSDPNKCLSAIIYKKITFDEVI------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKS 805
           +Y +DP     A    KI+++E++      +K L      +  + +   +P+RV S    
Sbjct: 178 VYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHP---RSVEYAKKYNVPLRVRSSFSD 234

Query: 806 GALKRVIEGKNEGTLV 821
                     N GTL+
Sbjct: 235 ----------NPGTLI 240

Length = 404

>gnl|CDD|239344 cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

 Score = 44.4 bits (106), Expect = 7e-06
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 2  DFEIRDIDL---FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP 51
           +E+   D       P     +NP G+VP+LV+ DL+L ES  I  Y+ E++ 
Sbjct: 24 PYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals. Length = 76

>gnl|CDD|222110 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 2  DFEIRDIDL--FNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDER 49
           +EI ++ L  ++KP  +  +NP G+VP+LV +   ++ +S  I EY++E 
Sbjct: 18 PYEIEEVPLDPWDKPPELLALNPLGKVPVLVLDDGEVITDSLAILEYLEEL 68

This family is closely related to pfam02798. Length = 68

>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 705 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 755
           +K L  G VV+  G IG       TT      D +AAL A  + AE +   T V GIY +
Sbjct: 172 LKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTT 231

Query: 756 DPNKCLSAIIYKKITFDE 773
           DP  C +A   K+I+F E
Sbjct: 232 DPRICPAARAIKEISFAE 249

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292

>gnl|CDD|215674 pfam00043, GST_C, Glutathione S-transferase, C-terminal domain

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 78  FIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLW 137
           +  L     E         + A E++   L  L  +     Y++GD+ ++ D+ +AP L 
Sbjct: 8   YALLPYGPPEEKDEPE--VEEALEKLLKVLEALEEVLKGKTYLVGDKLTLADIALAPALD 65

Query: 138 RLDYYGINLSKSASPLIKYAERIFSRP 164
            L     +  +    L  + +R+ +RP
Sbjct: 66  WLYMLEPDPLEKFPNLKAWRKRVAARP 92

GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes. Length = 92

>gnl|CDD|182533 PRK10542, PRK10542, glutathionine S-transferase; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 22/188 (11%)

Query: 1   MDFEIRDIDLFNKP----DNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQL 55
           +DF +  +DL  K     D+   +NP GQVP L+  D  +L E   I +Y+ +  P  QL
Sbjct: 23  LDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQL 82

Query: 56  MSSDPLMRARARLMLLNF-EKEI---FIHLYMLENERNKTSIKGYK-RAREEIRDRLITL 110
           ++    +     +  LN+   E+   F  L+     R  T  + YK   R ++  +   +
Sbjct: 83  LAPVGSLSRYHTIEWLNYIATELHKGFTPLF-----RPDTP-EEYKPTVRAQLEKKFQYV 136

Query: 111 APLFLKNKYMLGDEFSMLDVVIAPLL-WRLDYYGINLSKSASPLIK-YAERIFSRPSYME 168
                  +++ G  F++ D  +  +L W    Y + L+      I  Y +R+  RP+   
Sbjct: 137 DEALADEQWICGQRFTIADAYLFTVLRWA---YAVKLNLEGLEHIAAYMQRVAERPAVAA 193

Query: 169 SLTPAEKI 176
           +L  AE +
Sbjct: 194 ALK-AEGL 200

Length = 201

>gnl|CDD|217234 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 2  DFEIRDIDL--FNKPDNIFRMNPY-GQVPILVERDLILYESNIINEYIDE 48
          ++E   +D    +K     ++NP  GQVP L +    L ES  I  Y+  
Sbjct: 25 EYEDVRVDFSGEHKSPEWLKLNPLMGQVPALEDGGKKLTESLAIARYLAR 74

Function: conjugation of reduced glutathione to a variety of targets. Also included in the alignment, but are not GSTs: * S-crystallins from squid. Similarity to GST previously noted. * Eukaryotic elongation factors 1-gamma. Not known to have GST activity; similarity not previously recognised. * HSP26 family of stress-related proteins. including auxin-regulated proteins in plants and stringent starvation proteins in E. coli. Not known to have GST activity. Similarity not previously recognised. The glutathione molecule binds in a cleft between N and C-terminal domains - the catalytically important residues are proposed to reside in the N-terminal domain. Length = 74

>gnl|CDD|198286 cd00299, GST_C_family, C-terminal, alpha helical domain of the Glutathione S-transferase family

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 62  MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYML 121
           +RA            +   LY LE           + AREE+   L  L  L     Y+ 
Sbjct: 1   VRALEDWADATLAPPLVRLLY-LEKVPLPKDEAAVEAAREELPALLAALEQLLAGRPYLA 59

Query: 122 GDEFSMLDVVIAPLLWRLDYYGINLS-KSASPLIK-YAERI 160
           GD+FS+ DV +AP+L RL+  G         P +K + +R+
Sbjct: 60  GDQFSLADVALAPVLARLEALGPYYDLLDEYPRLKAWYDRL 100

Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases. Length = 100

>gnl|CDD|239354 cd03056, GST_N_4, GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 1  MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEY 45
          + +E  ++D+     +      +NP G+VP+L     +L ESN I  Y
Sbjct: 24 IPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Length = 73

>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 9/74 (12%)

Query: 709 EEGKVVIFAGGIG-NPFFTT--------DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 759
           E GKVV+  G I  N    T        D +AAL AA + AE +   T VDG+Y +DP K
Sbjct: 177 EHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRK 236

Query: 760 CLSAIIYKKITFDE 773
              A + K++++DE
Sbjct: 237 VPDARLLKELSYDE 250

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 44.5 bits (106), Expect = 3e-04
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 22/114 (19%)

Query: 706 KYLEEGKVVIFAG--GIGNPFF---TT------DTTAALRAAEIKAEIILKATKVDGIYN 754
           ++L+ GKVV+ AG  GI        TT      DT+A   AA + A+     T V G+  
Sbjct: 123 RHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLT 182

Query: 755 SDPNKCLSAIIYKKITFDEVISKKLE-------IMDSTAFSFCRDQKLPIRVFS 801
           +DP     A +  +I+ DE+    LE       ++   A    R+  +P+ V S
Sbjct: 183 TDPRLVPEAQLMDEISCDEM----LELASLGASVLHPRAVEIARNYGVPLVVRS 232

Length = 587

>gnl|CDD|198289 cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 78  FIHLYML-ENERNKTSIKGYKRAREE---IRDRLITLAPLFLKNKYMLGDEFSMLDVVIA 133
           F  L      +R+  +I     A  +   I D    LA    +  Y+ GD F++ D+ + 
Sbjct: 25  FWGLVRTPPEQRDPAAIAASLAACNKLMAILDA--QLA----RQAYLAGDRFTLADIALG 78

Query: 134 PLLWRLDYYGINLSKSASP-LIKYAERIFSRPSY 166
             ++R  +  + + + A P L ++  R+  RP++
Sbjct: 79  CSVYR--WLELPIERPALPHLERWYARLSQRPAF 110

Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Length = 110

>gnl|CDD|239345 cd03047, GST_N_2, GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 19 RMNPYGQVPILVERDLILYESNIINEYI 46
           MNP G+VP+L + D +L+ESN I  Y+
Sbjct: 45 AMNPNGRVPVLEDGDFVLWESNAILRYL 72

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions. Length = 73

>gnl|CDD|239355 cd03057, GST_N_Beta, GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 2  DFEIRDIDLFNKP---DNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFP 51
           FE+  +DL  K     +   +NP GQVP LV +   +L ES  I +Y+ +  P
Sbjct: 24 PFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH. Length = 77

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score = 42.9 bits (102), Expect = 7e-04
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 705 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 755
           +  L    VV+  G IG       TT      D +AAL A  + A  +   T V GIY +
Sbjct: 168 LLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTT 227

Query: 756 DPNKCLSAIIYKKITFDE 773
           DP    +A    +I+F+E
Sbjct: 228 DPRIVPAAKRIDEISFEE 245

Length = 448

>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function prediction only]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 26/168 (15%)

Query: 675 DILNKSGI--ISHVMSAISIEKFLESYIPLNAIK-YLEEGKV------VIFAGGIGNPFF 725
           D L  +G+  +S V  + S       Y  L AIK  LE+G V      V+     G    
Sbjct: 88  DALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEII 147

Query: 726 TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEV----------- 774
           + D      A E+K + ++  T VDG+Y+ DP K   A +  +I                
Sbjct: 148 SGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTG 207

Query: 775 -ISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
            I+KKLE          R  K  + +F+  K   + R + G+N GT +
Sbjct: 208 GIAKKLE----ALLEIARYGK-EVYIFNGNKPENIYRALRGENVGTRI 250

Length = 252

>gnl|CDD|198316 cd03207, GST_C_8, C-terminal, alpha helical domain of an unknown subfamily 8 of Glutathione S-transferases

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 98  RAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIA-PLLWRLDYYGINLSKSASPLIK- 155
            A  ++ +RL  L        Y++G+ FS  D+++A  L W   +  +       P ++ 
Sbjct: 36  AAYGDLDERLAALEAALAGRPYLVGERFSAADLLLASVLRWARAFGLL----PEYPALRA 91

Query: 156 YAERIFSRPS 165
           Y  R  +RP+
Sbjct: 92  YVARCTARPA 101

Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 8; composed of Agrobacterium tumefaciens GST and other uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The three-dimensional structure of Agrobacterium tumefaciens GST has been determined but there is no information on its functional characterization. Length = 101

>gnl|CDD|182405 PRK10357, PRK10357, putative glutathione S-transferase; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 9/160 (5%)

Query: 21  NPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLM--LLNFEKEI 77
           NP G+VP LV E     ++S II EYI+     P ++  DPL   R R +  L +   + 
Sbjct: 44  NPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDPLAALRVRQLEALADGIMDA 103

Query: 78  FIHLYMLENER--NKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL 135
            +     E  R   + S     R RE+I   L  L    +    +  D  ++  + IA  
Sbjct: 104 ALVSVR-EQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAIACA 161

Query: 136 LWRLDYYGI--NLSKSASPLIKYAERIFSRPSYMESLTPA 173
           +  L++  +          L+K  E +F R S+  +  P 
Sbjct: 162 VGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTEPPK 201

Length = 202

>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 44/218 (20%), Positives = 89/218 (40%), Gaps = 27/218 (12%)

Query: 623 ISEIVSCGIE--LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKS 680
           + EIV+   E  L I+ GGG   R +         S    +GM   ++  L        +
Sbjct: 54  VEEIVALRPEHKLLILTGGGTRARHVY--------SIGLDLGMPTGVLAKLGASVSEQNA 105

Query: 681 GIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG-----------GIGN-PFFTTD 728
            +++ +++     K     +      +L+ G+  + +G             G  P   TD
Sbjct: 106 EMLATLLAKHGGSKVGHGDLLQLPT-FLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTD 164

Query: 729 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLE--IMDSTA 786
             A L A  I A  ++     DG+Y +DP K   A    +I+  E++ K L+  +++   
Sbjct: 165 VGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPV 224

Query: 787 FSFCRDQKL--PIRVFSIIKSGALKRVIEGKNEGTLVY 822
               ++ +    +++ + +  G L R + G++ GT++ 
Sbjct: 225 LDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTIIR 262

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262

>gnl|CDD|198297 cd03188, GST_C_Beta, C-terminal, alpha helical domain of Class Beta Glutathione S-transferases

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 17/114 (14%)

Query: 63  RARARLM-LLNF-----EKEIFIHLYMLENERNKTSIKGYKR-AREEIRDRLITLAPLFL 115
             RARL+  LNF      K      Y      +    +  K  ARE +  RL  L     
Sbjct: 1   LERARLLEWLNFIASELHKAFGPLFY-PARWADDALAEEVKAAARERLERRLAYLDAQLA 59

Query: 116 KNKYMLGDEFSMLD----VVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS 165
              Y+LGD+FS+ D    VV   L W     G++LS     L  Y  R+ +RP+
Sbjct: 60  GGPYLLGDQFSVADAYLFVV---LRW-ARAVGLDLSD-WPHLAAYLARVAARPA 108

Glutathione S-transferase (GST) C-terminal domain family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they are involved in the protection against oxidative stress and are able to bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs, contributing to antibiotic resistance. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH. One member of this subfamily is a GST from Burkholderia xenovorans LB400 that is encoded by the bphK gene and is part of the biphenyl catabolic pathway. Length = 113

>gnl|CDD|166019 PLN02378, PLN02378, glutathione S-transferase DHAR1

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 43/202 (21%), Positives = 90/202 (44%), Gaps = 31/202 (15%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           + ++I  I+L +KP     ++P G+VP+L   D  + +S++I   ++E++P       DP
Sbjct: 35  LTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYP-------DP 87

Query: 61  LMRARARLMLLNFEKEIF--IHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK 118
            ++  A    +     IF     ++   + N  S        E + + L +         
Sbjct: 88  PLKTPAEFASVG--SNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKS-----HDGP 140

Query: 119 YMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRPSYMESLTPA 173
           ++ G+  S +D+ +AP L+ L      +   ++ +S   +  Y + +FS  S+ ++ T  
Sbjct: 141 FIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKT-E 199

Query: 174 EKIMQAGVHFGHQTRFWNPKMS 195
           EK + +G         W PK++
Sbjct: 200 EKYVISG---------WAPKVN 212

Length = 213

>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 22/126 (17%)

Query: 708 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 758
           LE+ ++VI AG  G   N   TT      DTTA   A  + A+     T VDG+Y  DP 
Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184

Query: 759 KCLSAIIYKKITF---DEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK 815
              +A     I F   + +  K  +++   +        +P+RV S  + G         
Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVG--------- 235

Query: 816 NEGTLV 821
            EGTL+
Sbjct: 236 -EGTLI 240

Length = 392

>gnl|CDD|198324 cd10291, GST_C_YfcG_like, C-terminal, alpha helical domain of Escherichia coli YfcG Glutathione S-transferases and related uncharacterized proteins

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 80  HLYMLENERNKTSIKGY----KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL 135
           H      E+   +IK Y    KR    +  RL        K+KY+ GDE+S+ D+ I P 
Sbjct: 25  HFKRYAPEKIPYAIKRYTNETKRLYGVLDRRLA-------KSKYLAGDEYSIADIAIWPW 77

Query: 136 LWRLDYYGINLSKSASPLIKYAERIFSRP 164
           + R ++ GI+L      L ++ ER+ +RP
Sbjct: 78  VARHEWQGIDL-ADFPNLKRWFERLAARP 105

Glutathione S-transferase (GST) C-terminal domain family, YfcG-like subfamily; composed of the Escherichia coli YfcG and related proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST active site is located in a cleft between the N- and C-terminal domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. YfcG is one of nine GST homologs in Escherichia coli. It is expressed predominantly during the late stationary phase where the predominant form of GSH is glutathionylspermidine (GspSH), suggesting that YfcG might interact with GspSH. It has very low or no GSH transferase or peroxidase activity, but displays a unique disulfide bond reductase activity that is comparable to thioredoxins (TRXs) and glutaredoxins (GRXs). However, unlike TRXs and GRXs, YfcG does not contain a redox active cysteine residue and may use a bound thiol disulfide couple such as 2GSH/GSSG for activity. The crystal structure of YcfG reveals a bound GSSG molecule in its active site. The actual physiological substrates for YfcG are yet to be identified. Length = 110

>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 21/126 (16%)

Query: 708 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 758
           LE+GK+ +  G IG   +   TT      D +A +  A + A+ I     VDG+  +DP 
Sbjct: 181 LEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPR 240

Query: 759 KCLSAIIYKKITFDEVISKKL---EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK 815
               A    ++++ E +       +++         ++ +P+RV         K     +
Sbjct: 241 IVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRV---------KNTFNPE 291

Query: 816 NEGTLV 821
             GTL+
Sbjct: 292 APGTLI 297

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1012
COG0052	252	RpsB Ribosomal protein S2 [Translation, ribosomal	100.0
PRK12311	326	rpsB 30S ribosomal protein S2/unknown domain fusio	100.0
TIGR01011	225	rpsB_bact ribosomal protein S2, bacterial type. TI	100.0
PRK05299	258	rpsB 30S ribosomal protein S2; Provisional	100.0
CHL00067	230	rps2 ribosomal protein S2	100.0
COG0233	187	Frr Ribosome recycling factor [Translation, riboso	100.0
PF00318	211	Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0	100.0
COG0264	296	Tsf Translation elongation factor Ts [Translation,	100.0
cd01425	193	RPS2 Ribosomal protein S2 (RPS2), involved in form	100.0
TIGR01012	196	Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa	100.0
PRK00083	185	frr ribosome recycling factor; Reviewed	100.0
PRK04020	204	rps2P 30S ribosomal protein S2; Provisional	100.0
PRK09377	290	tsf elongation factor Ts; Provisional	100.0
TIGR00116	290	tsf translation elongation factor Ts. This protein	100.0
TIGR00496	176	frr ribosome recycling factor. This model finds on	100.0
PTZ00254	249	40S ribosomal protein SA; Provisional	100.0
cd00520	179	RRF Ribosome recycling factor (RRF). Ribosome recy	100.0
KOG0832|consensus	251		100.0
PF01765	165	RRF: Ribosome recycling factor; InterPro: IPR02358	100.0
PRK12332	198	tsf elongation factor Ts; Reviewed	100.0
CHL00098	200	tsf elongation factor Ts	100.0
KOG4759|consensus	263		100.0
KOG1071|consensus	340		100.0
COG0528	238	PyrH Uridylate kinase [Nucleotide transport and me	100.0
PRK14556	249	pyrH uridylate kinase; Provisional	100.0
PRK14558	231	pyrH uridylate kinase; Provisional	100.0
PF00889	221	EF_TS: Elongation factor TS; InterPro: IPR014039 T	100.0
PRK00358	231	pyrH uridylate kinase; Provisional	100.0
PRK14557	247	pyrH uridylate kinase; Provisional	100.0
cd04239	229	AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik	100.0
cd04254	231	AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi	100.0
TIGR02075	233	pyrH_bact uridylate kinase. This protein, also cal	100.0
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	99.97
KOG0830|consensus	254		99.97
cd04253	221	AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP	99.95
PRK12314	266	gamma-glutamyl kinase; Provisional	99.95
PTZ00489	264	glutamate 5-kinase; Provisional	99.95
cd04256	284	AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase	99.95
TIGR02076	221	pyrH_arch uridylate kinase, putative. This family	99.95
PRK13402	368	gamma-glutamyl kinase; Provisional	99.95
cd04242	251	AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K	99.94
PRK05429	372	gamma-glutamyl kinase; Provisional	99.94
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	99.94
cd02115	248	AAK Amino Acid Kinases (AAK) superfamily, catalyti	99.94
cd04261	239	AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina	99.94
cd04246	239	AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina	99.94
COG1608	252	Predicted archaeal kinase [General function predic	99.94
cd04241	252	AAK_FomA-like AAK_FomA-like: This CD includes a fo	99.93
cd04255	262	AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th	99.93
KOG1154|consensus	285		99.93
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	99.92
PRK08841	392	aspartate kinase; Validated	99.92
cd04234	227	AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK)	99.92
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	99.92
PRK09481	211	sspA stringent starvation protein A; Provisional	99.92
cd04260	244	AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase	99.92
TIGR00746	310	arcC carbamate kinase. The seed alignment for this	99.92
PRK06635	404	aspartate kinase; Reviewed	99.91
PRK14058	268	acetylglutamate/acetylaminoadipate kinase; Provisi	99.91
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	99.91
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	99.91
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.9
PRK12454	313	carbamate kinase-like carbamoyl phosphate syntheta	99.9
PRK12353	314	putative amino acid kinase; Reviewed	99.9
CHL00202	284	argB acetylglutamate kinase; Provisional	99.9
PLN02512	309	acetylglutamate kinase	99.9
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.89
PRK08210	403	aspartate kinase I; Reviewed	99.89
cd04244	298	AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina	99.89
PRK12686	312	carbamate kinase; Reviewed	99.88
cd04250	279	AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase	99.88
PRK10542	201	glutathionine S-transferase; Provisional	99.88
PRK07431	587	aspartate kinase; Provisional	99.88
PRK00942	283	acetylglutamate kinase; Provisional	99.88
KOG0868|consensus	217		99.88
KOG0406|consensus	231		99.88
PLN02395	215	glutathione S-transferase	99.88
PRK06291	465	aspartate kinase; Provisional	99.88
PLN02473	214	glutathione S-transferase	99.88
cd04259	295	AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super	99.88
cd04238	256	AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate	99.87
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	99.87
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	99.87
PRK15113	214	glutathione S-transferase; Provisional	99.87
cd04251	257	AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina	99.87
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	99.87
cd04249	252	AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina	99.87
cd04245	288	AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki	99.86
cd04257	294	AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa	99.86
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	99.86
PRK10357	202	putative glutathione S-transferase; Provisional	99.86
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	99.86
PRK12352	316	putative carbamate kinase; Reviewed	99.86
PRK08373	341	aspartate kinase; Validated	99.86
cd04243	293	AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina	99.85
PRK11752	264	putative S-transferase; Provisional	99.85
cd04258	292	AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki	99.84
PRK12354	307	carbamate kinase; Reviewed	99.84
cd04247	306	AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa	99.84
PRK09411	297	carbamate kinase; Reviewed	99.84
PLN02378	213	glutathione S-transferase DHAR1	99.84
cd04240	203	AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin	99.84
PLN02551	521	aspartokinase	99.84
PF00696	242	AA_kinase: Amino acid kinase family Match to Gluta	99.84
TIGR02078	327	AspKin_pair Pyrococcus aspartate kinase subunit, p	99.83
TIGR00761	231	argB acetylglutamate kinase. This model describes	99.82
PRK09084	448	aspartate kinase III; Validated	99.82
PRK09034	454	aspartate kinase; Reviewed	99.82
PLN02817	265	glutathione dehydrogenase (ascorbate)	99.82
cd04237	280	AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG)	99.81
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	99.79
PRK05925	440	aspartate kinase; Provisional	99.79
cd04252	248	AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam	99.79
KOG0867|consensus	226		99.79
COG0549	312	ArcC Carbamate kinase [Amino acid transport and me	99.79
PRK05279	441	N-acetylglutamate synthase; Validated	99.79
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	99.79
cd04236	271	AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA	99.78
TIGR01890	429	N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi	99.78
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	99.75
PTZ00057	205	glutathione s-transferase; Provisional	99.75
PRK09181	475	aspartate kinase; Validated	99.73
PRK10387	210	glutaredoxin 2; Provisional	99.71
cd04248	304	AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S	99.7
KOG1695|consensus	206		99.68
PRK04531	398	acetylglutamate kinase; Provisional	99.65
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	99.64
COG2054	212	Uncharacterized archaeal kinase related to asparto	99.63
KOG0456|consensus	559		99.61
PLN02907	722	glutamate-tRNA ligase	99.56
KOG4420|consensus	325		99.56
PLN02825	515	amino-acid N-acetyltransferase	99.55
KOG1422|consensus	221		99.41
COG0264	296	Tsf Translation elongation factor Ts [Translation,	99.37
TIGR00116	290	tsf translation elongation factor Ts. This protein	99.37
PF00889	221	EF_TS: Elongation factor TS; InterPro: IPR014039 T	99.34
PRK09377	290	tsf elongation factor Ts; Provisional	99.33
cd03186	107	GST_C_SspA GST_N family, Stringent starvation prot	99.28
cd03182	117	GST_C_GTT2_like GST_C family, Saccharomyces cerevi	99.22
cd03196	115	GST_C_5 GST_C family, unknown subfamily 5; compose	99.21
cd03189	119	GST_C_GTT1_like GST_C family, Saccharomyces cerevi	99.15
cd03188	114	GST_C_Beta GST_C family, Class Beta subfamily; GST	99.13
cd03185	126	GST_C_Tau GST_C family, Class Tau subfamily; GSTs	99.13
cd03177	118	GST_C_Delta_Epsilon GST_C family, Class Delta and	99.06
cd03203	120	GST_C_Lambda GST_C family, Class Lambda subfamily;	99.06
cd03187	118	GST_C_Phi GST_C family, Class Phi subfamily; compo	99.06
cd03190	142	GST_C_ECM4_like GST_C family, ECM4-like subfamily;	99.05
cd03191	121	GST_C_Zeta GST_C family, Class Zeta subfamily; GST	99.04
cd03178	113	GST_C_Ure2p_like GST_C family, Ure2p-like subfamil	99.04
cd03180	110	GST_C_2 GST_C family, unknown subfamily 2; compose	99.03
cd03183	126	GST_C_Theta GST_C family, Class Theta subfamily; c	99.02
cd03184	124	GST_C_Omega GST_C family, Class Omega subfamily; G	99.02
PF00043	95	GST_C: Glutathione S-transferase, C-terminal domai	98.99
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	98.99
CHL00098	200	tsf elongation factor Ts	98.98
cd03208	137	GST_C_Alpha GST_C family, Class Alpha subfamily; G	98.97
cd03209	121	GST_C_Mu GST_C family, Class Mu subfamily; GSTs ar	98.96
cd03200	96	GST_C_JTV1 GST_C family, JTV-1 subfamily; composed	98.95
cd03198	134	GST_C_CLIC GST_C family, Chloride Intracellular Ch	98.95
cd03201	121	GST_C_DHAR GST_C family, Dehydroascorbate Reductas	98.95
COG0435	324	ECM4 Predicted glutathione S-transferase [Posttran	98.94
cd03181	123	GST_C_EFB1gamma GST_C family, Gamma subunit of Elo	98.93
cd03195	114	GST_C_4 GST_C family, unknown subfamily 4; compose	98.93
cd03204	111	GST_C_GDAP1 GST_C family, Ganglioside-induced diff	98.92
cd03210	126	GST_C_Pi GST_C family, Class Pi subfamily; GSTs ar	98.87
PRK12332	198	tsf elongation factor Ts; Reviewed	98.86
cd03206	100	GST_C_7 GST_C family, unknown subfamily 7; compose	98.82
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	98.79
cd03179	105	GST_C_1 GST_C family, unknown subfamily 1; compose	98.79
KOG4244|consensus	281		98.78
KOG2903|consensus	319		98.77
PF13410	69	GST_C_2: Glutathione S-transferase, C-terminal dom	98.75
cd03194	114	GST_C_3 GST_C family, unknown subfamily 3; compose	98.71
cd03207	103	GST_C_8 GST_C family, unknown subfamily 8; compose	98.71
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	98.7
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	98.7
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	98.68
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	98.65
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	98.63
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	98.62
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	98.6
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	98.59
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	98.57
cd03192	104	GST_C_Sigma_like GST_C family, Class Sigma_like; c	98.56
PF14497	99	GST_C_3: Glutathione S-transferase, C-terminal dom	98.55
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	98.55
cd03202	124	GST_C_etherase_LigE GST_C family, Beta etherase Li	98.52
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	98.5
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	98.5
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	98.5
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	98.48
cd00299	100	GST_C_family Glutathione S-transferase (GST) famil	98.47
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	98.45
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	98.45
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	98.43
cd03193	88	GST_C_Metaxin GST_C family, Metaxin subfamily; com	98.41
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	98.4
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	98.38
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	98.38
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	98.38
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	98.37
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	98.35
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	98.28
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	98.27
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	98.2
cd03205	98	GST_C_6 GST_C family, unknown subfamily 6; compose	98.15
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	98.14
COG2999	215	GrxB Glutaredoxin 2 [Posttranslational modificatio	98.09
KOG3029|consensus	370		98.06
KOG3027|consensus	257		98.04
KOG2436|consensus	520		97.99
cd03211	126	GST_C_Metaxin2 GST_C family, Metaxin subfamily, Me	97.98
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	97.94
cd03212	137	GST_C_Metaxin1_3 GST_C family, Metaxin subfamily,	97.94
PF14834	117	GST_C_4: Glutathione S-transferase, C-terminal dom	97.93
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	97.88
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	97.83
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	97.81
cd03197	149	GST_C_mPGES2 GST_C family; microsomal Prostaglandi	97.79
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	97.71
KOG3028|consensus	313		97.46
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.44
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	96.88
PRK12570	296	N-acetylmuramic acid-6-phosphate etherase; Reviewe	96.59
cd05007	257	SIS_Etherase N-acetylmuramic acid 6-phosphate ethe	96.23
TIGR00274	291	N-acetylmuramic acid 6-phosphate etherase. This pr	95.84
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	95.63
PRK06369	115	nac nascent polypeptide-associated complex protein	95.39
KOG1147|consensus	712		95.29
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	95.05
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	94.78
KOG1071|consensus	340		94.75
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	94.69
PF04399	132	Glutaredoxin2_C: Glutaredoxin 2, C terminal domain	94.56
cd03199	128	GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) sub	94.07
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	93.29
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	88.62
PRK10638	83	glutaredoxin 3; Provisional	87.48
PRK00414	192	gmhA phosphoheptose isomerase; Reviewed	87.45
TIGR03127	179	RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of	85.98
PF10568	72	Tom37: Outer mitochondrial membrane transport comp	85.37
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	84.45
COG2103	298	Predicted sugar phosphate isomerase [General funct	83.11
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	82.13
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	81.17
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	80.75
cd05006	177	SIS_GmhA Phosphoheptose isomerase is a member of t	80.37
PRK10886	196	DnaA initiator-associating protein DiaA; Provision	80.27

>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.6e-73  Score=576.56  Aligned_cols=224  Identities=49%  Similarity=0.828  Sum_probs=220.5

Q ss_pred             ccchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHH
Q psy3752         169 SLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA  248 (1012)
Q Consensus       169 ~lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~  248 (1012)
                      .++ +++|+++|+||||++++|||+|++|||+.|||+|||||.+|+.+|+.|+++++.++.+||+|||||||++++++|+
T Consensus         3 ~vs-m~~lLeAGvHfGhqtr~wnpkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~   81 (252)
T COG0052           3 VVS-MKQLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVK   81 (252)
T ss_pred             cCC-HHHHHHcCccccccccccCCcccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHH
Confidence            367 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEE
Q psy3752         249 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI  328 (1012)
Q Consensus       249 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~  328 (1012)
                      ++|++||++||++||+|||||||+||++++++|++++.+..++ |+.|||||.+.+.|+.+||+++|||||+|+++||++
T Consensus        82 ~~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~-~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l  160 (252)
T COG0052          82 EFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG-FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVL  160 (252)
T ss_pred             HHHHHhCCceecCcccCccccCchhHHHHHHHHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEE
Confidence            9999999999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             EEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhh
Q psy3752         329 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV  394 (1012)
Q Consensus       329 iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v  394 (1012)
                      ||+||..|++||+||+++||||||+|||||||+.||||||||||+++||.|++|+|++||++|+.-
T Consensus       161 ~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~  226 (252)
T COG0052         161 FVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGG  226 (252)
T ss_pred             EEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999863

>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional

Probab=100.00  E-value=2e-65  Score=555.34  Aligned_cols=221  Identities=47%  Similarity=0.813  Sum_probs=218.0

Q ss_pred             hhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHH
Q psy3752         173 AEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAV  252 (1012)
Q Consensus       173 ~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~  252 (1012)
                      +++|+++|+||||++++|||+|++||||.|+|+|||||++|+.+|++||+||..++.+||+|||||||++++++|+++|+
T Consensus         1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~   80 (326)
T PRK12311          1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAK   80 (326)
T ss_pred             ChhHHhCCeecccCCCCCCCcccCceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeC
Q psy3752         253 RAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID  332 (1012)
Q Consensus       253 ~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~  332 (1012)
                      +||++||++||+|||||||+|+++++++|++++++..++.|+.|+|||.+.+.|+.+||+++|+||++|+++||+|||+|
T Consensus        81 ~~g~~yV~~RWlgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~d  160 (326)
T PRK12311         81 RSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVID  160 (326)
T ss_pred             HhCCeeeCCeecCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752         333 VGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  393 (1012)
Q Consensus       333 ~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~  393 (1012)
                      |..|++||+||+++||||||||||||||++|||||||||||++||+||+++|+++|++|+.
T Consensus       161 ~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~  221 (326)
T PRK12311        161 TNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGIS  221 (326)
T ss_pred             CccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999985

>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type

Probab=100.00  E-value=4.9e-64  Score=525.46  Aligned_cols=222  Identities=50%  Similarity=0.878  Sum_probs=218.8

Q ss_pred             cchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHH
Q psy3752         170 LTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN  249 (1012)
Q Consensus       170 lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~  249 (1012)
                      ++ +++|+++|+|+||+..+|||+|++||||.|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|++
T Consensus         2 ~~-~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~   80 (225)
T TIGR01011         2 VS-MKDLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKE   80 (225)
T ss_pred             cC-HHHHHHcCcccccccCcCCcccccceeeeeCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence            45 78999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEE
Q psy3752         250 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF  329 (1012)
Q Consensus       250 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~i  329 (1012)
                      +|++||++||++||+||+||||.|+++++++|++++++..++.|+.+||||.+.+.|+++||+++|+|+++|+++||+||
T Consensus        81 ~a~~~~~~yv~~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vi  160 (225)
T TIGR01011        81 EAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLF  160 (225)
T ss_pred             HHHHhCCcccCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhh
Q psy3752         330 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK  392 (1012)
Q Consensus       330 v~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~  392 (1012)
                      |+||.+|++||+||.++||||||||||||||++|||||||||||.+|++|++++|++||.+|+
T Consensus       161 i~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~  223 (225)
T TIGR01011       161 VIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK  223 (225)
T ss_pred             EeCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999986

TIGR01012 describes the archaeal and cytosolic forms.

>PRK05299 rpsB 30S ribosomal protein S2; Provisional

Probab=100.00  E-value=6.8e-64  Score=532.69  Aligned_cols=224  Identities=52%  Similarity=0.926  Sum_probs=220.2

Q ss_pred             ccchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHH
Q psy3752         169 SLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA  248 (1012)
Q Consensus       169 ~lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~  248 (1012)
                      .++ +++|+++|+|+||++++|||+|++||||.|+|+|||||.+|+.+|++||++++.++++||+||||||+++++++|+
T Consensus         3 ~~~-i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~   81 (258)
T PRK05299          3 VVS-MKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIA   81 (258)
T ss_pred             cCC-HHHHHhcCcccccccCcCCCccccceecccCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHH
Confidence            355 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEE
Q psy3752         249 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI  328 (1012)
Q Consensus       249 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~  328 (1012)
                      ++|++||++||++||+||+||||+|+++++++|++++++..++.|+.+||||.+.+.|+++||+++|+||++|+++||+|
T Consensus        82 ~~A~~~~~~yv~~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~i  161 (258)
T PRK05299         82 EEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDAL  161 (258)
T ss_pred             HHHHHhCCeeeCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752         329 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  393 (1012)
Q Consensus       329 iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~  393 (1012)
                      ||+||..|++||+||.++||||||||||||||++|||||||||||.+||+|++++|++||++|+.
T Consensus       162 ii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~  226 (258)
T PRK05299        162 FVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQ  226 (258)
T ss_pred             EEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999985

>CHL00067 rps2 ribosomal protein S2

Probab=100.00  E-value=9.4e-62  Score=509.92  Aligned_cols=223  Identities=41%  Similarity=0.711  Sum_probs=219.3

Q ss_pred             ccchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHH
Q psy3752         169 SLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA  248 (1012)
Q Consensus       169 ~lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~  248 (1012)
                      .++ ++.|+++|+|+||++.+|||+|++||||.|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|+
T Consensus         7 ~~~-i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v~   85 (230)
T CHL00067          7 NIN-LEEMLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLVA   85 (230)
T ss_pred             ccC-HHHHHhcCeEeccCcCcCCCchhhhhhcccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH
Confidence            456 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEE
Q psy3752         249 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI  328 (1012)
Q Consensus       249 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~  328 (1012)
                      ++|++||++||++||+||+||||.++++++++|+++++....+.|..++|||.+.+.|++.||+++|+||++|+++||+|
T Consensus        86 ~~a~~~~~~yv~~rWigG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~P~~i  165 (230)
T CHL00067         86 SAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIV  165 (230)
T ss_pred             HHHHHhCCcCccCcccCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccCCCEE
Confidence            99999999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             EEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhh
Q psy3752         329 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK  392 (1012)
Q Consensus       329 iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~  392 (1012)
                      ||+||..|++||+||.++||||||||||||||+.|||||||||||.+|++|++++|++||.+|+
T Consensus       166 iv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~  229 (230)
T CHL00067        166 IIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR  229 (230)
T ss_pred             EEeCCcccHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999986

>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2e-57  Score=442.88  Aligned_cols=185  Identities=47%  Similarity=0.738  Sum_probs=182.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHH
Q psy3752         828 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKK  907 (1012)
Q Consensus       828 ~~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~  907 (1012)
                      .++.++++++++|++++++|+++|+++|||||||++||+|.|+|||.++||+|||+||+|++|+|+|+|||++++++|++
T Consensus         3 ~~~~i~~~~e~kM~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~Iek   82 (187)
T COG0233           3 MINEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEK   82 (187)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHH
Q psy3752         908 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI  987 (1012)
Q Consensus       908 ai~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~i  987 (1012)
                      ||+.|||||||.+||++|||++|+||+|||++|+|.+|+++|++|++||||||++++++||+.|++.||||+.++++++|
T Consensus        83 aI~~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~i  162 (187)
T COG0233          83 AILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEI  162 (187)
T ss_pred             HHHHcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3752         988 QKLTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus       988 q~~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
                      |++||+|+++||++++.||||||+|
T Consensus       163 QKlTd~yi~~iD~~~~~KEkEim~v  187 (187)
T COG0233         163 QKLTDEYIKKIDELLKDKEKEIMEV  187 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999986

>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.9e-56  Score=467.29  Aligned_cols=211  Identities=48%  Similarity=0.795  Sum_probs=201.9

Q ss_pred             hhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcC
Q psy3752         176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG  255 (1012)
Q Consensus       176 l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~  255 (1012)
                      |+++++|+||+.++|||.|.+||||.|+|+|||||++|+.+|++|+++|..+++++|+||||||+++++++|+++|+++|
T Consensus         1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~~   80 (211)
T PF00318_consen    1 LLKAGVHLGHKKSRWNPKMKPYIYGKRNGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRTG   80 (211)
T ss_dssp             HHHHTTTSCBSSSSSSGGGGGGEEEEETTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHHT
T ss_pred             CcccceecCCCcCCCCCCcccceecccCceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCC
Q psy3752         256 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY  335 (1012)
Q Consensus       256 ~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~  335 (1012)
                      ++|+++||+||+||||.++++++.+|+++++...      ++||+...+.++++|++++|+|+++|+++||+||++||.+
T Consensus        81 ~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~------~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~  154 (211)
T PF00318_consen   81 SFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFK------LTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNK  154 (211)
T ss_dssp             CEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTT------SSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTT
T ss_pred             CCccCceecCcccCcHHHHHHHHHHHHHHHHhhh------ccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccc
Confidence            9999999999999999999999999999877554      8999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhh
Q psy3752         336 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK  392 (1012)
Q Consensus       336 ~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~  392 (1012)
                      |++|++||.++||||||||||||||+.|||||||||||.+|++|++++|++||++|+
T Consensus       155 ~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~  211 (211)
T PF00318_consen  155 NKNAIREANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK  211 (211)
T ss_dssp             THHHHHHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred             cchhHHHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....

>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.6e-56  Score=462.81  Aligned_cols=217  Identities=44%  Similarity=0.626  Sum_probs=201.2

Q ss_pred             hhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEe--CCEEEEEEEecCch
Q psy3752         389 LDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETD  466 (1012)
Q Consensus       389 ~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~--~~~~~lve~~~etd  466 (1012)
                      .++.+||+||++||++||||||||+|++||+|+|++|||++|+++|+||++|+++||+|.+|++  ++.|||||+|||||
T Consensus         4 ita~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETD   83 (296)
T COG0264           4 ITAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETD   83 (296)
T ss_pred             ccHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEecccc
Confidence            4567899999999999999999999999999999999999999999999999999999999996  66999999999999


Q ss_pred             hhhcchHHHHHHHHHHHHHHhcCCCChhHhhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCC-eeeeeccC-C
Q psy3752         467 FVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN-NLISYLHD-N  544 (1012)
Q Consensus       467 fva~~~~f~~l~~~ia~~iaa~~p~~~~~l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~-~i~~y~H~-~  544 (1012)
                      |||+|+.|+.|+++|+.++++.+|.++++|...++.+ ++||++.+.+.++++||||++|||..++.+. .+++|+|+ |
T Consensus        84 FVAkN~~F~~l~~~ia~~~l~~~~~~ve~l~~~~~~~-~~tv~e~~~~~~AkIGENi~lRR~~~~~~~~~~v~~Y~H~~g  162 (296)
T COG0264          84 FVAKNAEFQELANKIAKAALEKKPADVEELKAAFEPG-GKTVEEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNG  162 (296)
T ss_pred             ceeCChhHHHHHHHHHHHHHHhCcccHHHHHhhhccc-CccHHHHHHHHHHHhccceeEEEEEEeecCcccEEEEEeCCC
Confidence            9999999999999999999999999999999988865 6799999999999999999999999999877 59999999 8


Q ss_pred             ceEEEEEecC--CchHHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHHHhhhhhhhcCCCCccc
Q psy3752         545 KIGVIVEYNG--DNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNIN  612 (1012)
Q Consensus       545 ~~g~~v~~~~--~~~~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~~~~g~~~~~~~~~~id  612 (1012)
                      ||||||.+++  ..+++++++|||||||+|.|+++++||++++++|++++..++.      ..|+|..+-
T Consensus       163 riGVlv~~~~~~~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~~------~~gKP~~i~  226 (296)
T COG0264         163 RIGVLVALKGGAADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQLK------AEGKPENIV  226 (296)
T ss_pred             cEEEEEEEeccchHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHHH------hcCChHHHH
Confidence            9999999998  5678999999999999999999999999999999998877652      236665443

>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome

Probab=100.00  E-value=3.8e-54  Score=444.12  Aligned_cols=193  Identities=49%  Similarity=0.812  Sum_probs=186.3

Q ss_pred             hhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcC
Q psy3752         176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG  255 (1012)
Q Consensus       176 l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~  255 (1012)
                      ++++|+|+||+..+|||+|++||||.|+|+|||||++|+.+|++|+++++.++.++|+||||||+++++++|+++|++||
T Consensus         1 ll~ag~h~G~~~~~wnp~m~~yiyg~r~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~   80 (193)
T cd01425           1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG   80 (193)
T ss_pred             CCccceEeCCCcCCCCccchhheecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCC
Q psy3752         256 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY  335 (1012)
Q Consensus       256 ~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~  335 (1012)
                      ++|+++||+||+||||.++++++.++++++.                      .|++++|+|+++|.++||+|||+||..
T Consensus        81 ~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~----------------------~~~~k~~~g~~~~~~~Pdlviv~~~~~  138 (193)
T cd01425          81 SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEK----------------------EKLEKNLGGIKDMFRLPDLVIVLDPRK  138 (193)
T ss_pred             CeeecCeecCCcCCCHHHHHHHHHHHHHHHH----------------------HHHHHhcccccccccCCCEEEEeCCcc
Confidence            9999999999999999999999998876632                      678999999999999999999999999


Q ss_pred             chhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhh
Q psy3752         336 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD  390 (1012)
Q Consensus       336 ~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~  390 (1012)
                      |++|++||.++||||||+|||||||+.|||||||||||.+|++|++++|++||++
T Consensus       139 ~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~  193 (193)
T cd01425         139 EHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALILWLLARAILE  193 (193)
T ss_pred             chHHHHHHHHcCCCEEEEecCCCCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999863

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an

>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal)

Probab=100.00  E-value=1.2e-53  Score=430.85  Aligned_cols=171  Identities=24%  Similarity=0.366  Sum_probs=163.4

Q ss_pred             hhhhhhcccccCccccccCCCCcceeeccc-CCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHH
Q psy3752         173 AEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA  251 (1012)
Q Consensus       173 ~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r-~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a  251 (1012)
                      +++|+++|+|+||+.  |||+|++||||+| +|+|||||++|+++|++|+++++.++  +|+|||||||++++++|+++|
T Consensus         6 i~~ll~agvH~Gh~~--~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~--~~~ILfVgtk~~~~~~V~~~A   81 (196)
T TIGR01012         6 VDKYLAAGVHIGTQN--KTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE--PEDILVVSARIYGQKPVLKFA   81 (196)
T ss_pred             HHHHHhCCeecCCCc--CCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh--CCeEEEEecCHHHHHHHHHHH
Confidence            889999999999984  8999999999999 69999999999999999999999996  999999999999999999999


Q ss_pred             HHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEe
Q psy3752         252 VRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFII  331 (1012)
Q Consensus       252 ~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~  331 (1012)
                      ++||++||++||+|||||||.+-                 .|                             ++||++||+
T Consensus        82 ~~~g~~~v~~RWlgGtLTN~~~~-----------------~~-----------------------------~~Pdlliv~  115 (196)
T TIGR01012        82 KVTGARAIAGRFTPGTFTNPMQK-----------------AF-----------------------------REPEVVVVT  115 (196)
T ss_pred             HHhCCceECCeeCCCCCCCcccc-----------------cc-----------------------------CCCCEEEEE
Confidence            99999999999999999999630                 01                             489999999


Q ss_pred             CCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752         332 DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  393 (1012)
Q Consensus       332 ~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~  393 (1012)
                      ||..|++||+||+++||||||||||||||++|||||||||||.+|++|++|+|+++|++++.
T Consensus       116 dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~Si~li~~lla~ail~~~g  177 (196)
T TIGR01012       116 DPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHSLALIYWLLAREILRMRG  177 (196)
T ss_pred             CCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999984

TIGR01011 describes the related protein of organelles and bacteria.

>PRK00083 frr ribosome recycling factor; Reviewed

Probab=100.00  E-value=6.5e-53  Score=425.77  Aligned_cols=183  Identities=48%  Similarity=0.729  Sum_probs=180.6

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHHH
Q psy3752         830 SDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAI  909 (1012)
Q Consensus       830 ~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai  909 (1012)
                      +.++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++||
T Consensus         3 ~~~~~~~~~~m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI   82 (185)
T PRK00083          3 NEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAI   82 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHH
Q psy3752         910 NEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQK  989 (1012)
Q Consensus       910 ~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~  989 (1012)
                      ++||||+||++||++|||+||+||+|+|++++|.+|+.+|+||++||||||++++++|+++|++.+|||+.++++++||+
T Consensus        83 ~~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQk  162 (185)
T PRK00083         83 RASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQK  162 (185)
T ss_pred             HHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcC
Q psy3752         990 LTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus       990 ~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
                      +||+|+++||+++++||||||+|
T Consensus       163 ltd~~i~~id~~~~~Kekeim~v  185 (185)
T PRK00083        163 LTDKYIKKIDELLAAKEKEIMEV  185 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999986

>PRK04020 rps2P 30S ribosomal protein S2; Provisional

Probab=100.00  E-value=3.6e-53  Score=429.93  Aligned_cols=184  Identities=26%  Similarity=0.420  Sum_probs=170.6

Q ss_pred             cchhhhhhhcccccCccccccCCCCcceeeccc-CCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHH
Q psy3752         170 LTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA  248 (1012)
Q Consensus       170 lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r-~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~  248 (1012)
                      ++ +++|+++|+|+||+.  |||+|++||||.| +|+|||||++|+++|++||++|..+  ++|+|||||||++++++|+
T Consensus        10 v~-i~~ll~ag~H~Gh~~--~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ILfVgTk~~~~~~v~   84 (204)
T PRK04020         10 VP-LEEYLAAGVHIGTQQ--KTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY--EPEKILVVSSRQYGQKPVQ   84 (204)
T ss_pred             ee-HHHHHhCCeEcCCCc--CCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHH
Confidence            45 899999999999986  7999999999999 6999999999999999999999997  7999999999999999999


Q ss_pred             HHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEE
Q psy3752         249 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI  328 (1012)
Q Consensus       249 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~  328 (1012)
                      ++|++||++||++||+||+||||+.     +                                 ++        .+||++
T Consensus        85 k~A~~~g~~~v~~RWlgG~LTN~~~-----~---------------------------------~~--------~~Pdli  118 (204)
T PRK04020         85 KFAEVVGAKAITGRFIPGTLTNPSL-----K---------------------------------GY--------IEPDVV  118 (204)
T ss_pred             HHHHHhCCeeecCccCCCcCcCcch-----h---------------------------------cc--------CCCCEE
Confidence            9999999999999999999999972     0                                 01        289999


Q ss_pred             EEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChH
Q psy3752         329 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM  406 (1012)
Q Consensus       329 iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~  406 (1012)
                      ||+||..|++||+||+++||||||||||||||++|||||||||||++||+|++|+|+++|++|+  .+|++...|+++
T Consensus       119 iv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~SI~li~~ll~~aIl~~k--g~~~~~~~~~v~  194 (204)
T PRK04020        119 VVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALVYWLLAREILRER--GEIKPDEDLPVP  194 (204)
T ss_pred             EEECCcccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHHHHHHHHHHHHHHHHhh--CccCCCCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999998  457666666553

>PRK09377 tsf elongation factor Ts; Provisional

Probab=100.00  E-value=1.7e-52  Score=448.27  Aligned_cols=205  Identities=43%  Similarity=0.624  Sum_probs=194.4

Q ss_pred             hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEeCCEEEEEEEecCchhhh
Q psy3752         390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA  469 (1012)
Q Consensus       390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~~~~~~lve~~~etdfva  469 (1012)
                      +...+|+||++||+|||||||||.++|||+|+|++|||++|.++|+||++|.|+||+|+++++++.|+|||+||||||||
T Consensus         5 s~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~akA~Kk~~R~a~EG~I~~~~~~~~~~~vElncETDFVA   84 (290)
T PRK09377          5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAAKVDGNKGVLVEVNSETDFVA   84 (290)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhhHHHhcCccccceEEEEEeCCCEEEEEEEecCCcccc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhcCCCChhHhhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeec-CCeeeeeccC-CceE
Q psy3752         470 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKT-NNNLISYLHD-NKIG  547 (1012)
Q Consensus       470 ~~~~f~~l~~~ia~~iaa~~p~~~~~l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~-g~~i~~y~H~-~~~g  547 (1012)
                      ||+.|+.|+++++.++++..|.++++|.+..+  ++.||+|.+.+.++++||||+|+||.+++. |+.+++|+|+ ||||
T Consensus        85 rne~F~~l~~~i~~~~l~~~~~~~e~ll~~~~--~g~tv~d~i~~~~~~iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkig  162 (290)
T PRK09377         85 KNEDFQALANEVAEAALAAKPADVEALLALKL--DGGTVEEARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIG  162 (290)
T ss_pred             CChHHHHHHHHHHHHHHhcCCCCHHHHHhccc--cCCcHHHHHHHHHHHhcCceEEEEEEEEeecCCEEEEEEcCCCcEE
Confidence            99999999999999999999999999887766  356999999999999999999999999974 5679999998 6999


Q ss_pred             EEEEecCCchHHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHH
Q psy3752         548 VIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA  596 (1012)
Q Consensus       548 ~~v~~~~~~~~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~  596 (1012)
                      +||.+++..++++++||||||||+|.|++++++|++++++|++++..++
T Consensus       163 vlV~~~~~~~~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~E~~i~~~~~  211 (290)
T PRK09377        163 VLVALEGGDEELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQA  211 (290)
T ss_pred             EEEEEccCcHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHH
Confidence            9999999888899999999999999999999999999999999888775

>TIGR00116 tsf translation elongation factor Ts

Probab=100.00  E-value=1.8e-52  Score=448.07  Aligned_cols=205  Identities=38%  Similarity=0.556  Sum_probs=191.7

Q ss_pred             hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEeCCEEEEEEEecCchhhh
Q psy3752         390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA  469 (1012)
Q Consensus       390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~~~~~~lve~~~etdfva  469 (1012)
                      +...+|+||++||+|||||||||.++|||+|+|++|||++|.++|+||++|.|+||+|++|++++.|+|||+||||||||
T Consensus         4 sa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncETDFVA   83 (290)
T TIGR00116         4 TAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSETDFVA   83 (290)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecCCcccc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhcCCCChhHhhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecC-CeeeeeccC-CceE
Q psy3752         470 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTN-NNLISYLHD-NKIG  547 (1012)
Q Consensus       470 ~~~~f~~l~~~ia~~iaa~~p~~~~~l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g-~~i~~y~H~-~~~g  547 (1012)
                      ||+.|++|+++|++++++.++.+++.+.+..+. ++.|| |.+.+.++++||||+|+||.++..+ ..+++|+|+ ||+|
T Consensus        84 rne~F~~l~~~ia~~~~~~~~~~~e~l~~~~~~-~~~tv-d~i~~~~a~iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkig  161 (290)
T TIGR00116        84 KNAGFKEFANKLLDELKANKITTLEELQAQELE-NREKV-EYLAALAAKIGENINLRRVAVLEGDSNVIGSYLHAGARIG  161 (290)
T ss_pred             CChHHHHHHHHHHHHHHhcCCCCHHHHhhcccc-CCCcH-HHHHHHHHHhccceEEEEEEEEecCCCcEEEEEcCCCcEE
Confidence            999999999999999999999999998887664 45699 9999999999999999999999753 369999996 7999


Q ss_pred             EEEEecCC-chHHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHH
Q psy3752         548 VIVEYNGD-NESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA  596 (1012)
Q Consensus       548 ~~v~~~~~-~~~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~  596 (1012)
                      +||.+++. .++++++||||||||+|.|++++++|++++++|++++..++
T Consensus       162 vlv~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~vie~Erei~~~~~  211 (290)
T TIGR00116       162 VLVALKGKADEELAKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTDQA  211 (290)
T ss_pred             EEEEEecCchHHHHHHHHHHHHhcCCccCchhhCCHHHHHHHHHHHHHHH
Confidence            99999985 45789999999999999999999999999999999877775

This protein is found in Bacteria, mitochondria, and chloroplasts.

>TIGR00496 frr ribosome recycling factor

Probab=100.00  E-value=1.1e-51  Score=413.44  Aligned_cols=175  Identities=46%  Similarity=0.731  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHHHHhcCCCCC
Q psy3752         838 QKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLN  917 (1012)
Q Consensus       838 ~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~  917 (1012)
                      ++|++++++|+++|+++|+||+||++||+|+|+|||+++||+|||+|+++++++|+|+|||++++++|++||++||||+|
T Consensus         2 ~~M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lgln   81 (176)
T TIGR00496         2 ERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLN   81 (176)
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHH
Q psy3752         918 PTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILE  997 (1012)
Q Consensus       918 p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~  997 (1012)
                      |++||+.|||+||+||+|+|++++|.+|+.+|++|++||||||++++++|+++|++.+|||+.++++++||++||+|+++
T Consensus        82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~  161 (176)
T TIGR00496        82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKK  161 (176)
T ss_pred             cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcC
Q psy3752         998 INQLLINKEKEILTL 1012 (1012)
Q Consensus       998 id~~~~~kekel~~~ 1012 (1012)
                      +|+++++||||||+|
T Consensus       162 id~~~~~Kekeim~v  176 (176)
T TIGR00496       162 IDEILKDKEKELMEV  176 (176)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999986

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.

>PTZ00254 40S ribosomal protein SA; Provisional

Probab=100.00  E-value=8.9e-52  Score=428.24  Aligned_cols=183  Identities=24%  Similarity=0.343  Sum_probs=168.9

Q ss_pred             hhhhhhcccccCccccccCCCCcceeecc-cCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHH
Q psy3752         173 AEKIMQAGVHFGHQTRFWNPKMSSYIFGH-RNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA  251 (1012)
Q Consensus       173 ~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~-r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a  251 (1012)
                      +++|+++|+|+||+  +|||+|++||||+ ++|+|||||.+||++|++|+++|..+ .++++|||||||++++++|+++|
T Consensus        15 i~~lL~agvHlG~~--~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i-~~~~~Il~Vstr~~~~~~V~k~A   91 (249)
T PTZ00254         15 IKKMLACKCHIGTK--NLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAI-ENPADVVVVSSRPYGQRAVLKFA   91 (249)
T ss_pred             HHHHHhcCceeccC--cCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHH-hCCCcEEEEEcCHHHHHHHHHHH
Confidence            78999999999985  6999999999997 59999999999999999999999998 78999999999999999999999


Q ss_pred             HHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEe
Q psy3752         252 VRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFII  331 (1012)
Q Consensus       252 ~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~  331 (1012)
                      .+||++||++||+|||||||.+-                 .|                             ++||+|||+
T Consensus        92 ~~tg~~~i~~Rw~pGtlTN~~~~-----------------~f-----------------------------~~P~llIV~  125 (249)
T PTZ00254         92 QYTGASAIAGRFTPGTFTNQIQK-----------------KF-----------------------------MEPRLLIVT  125 (249)
T ss_pred             HHhCCeEECCcccCCCCCCcccc-----------------cc-----------------------------CCCCEEEEe
Confidence            99999999999999999998630                 01                             489999999


Q ss_pred             CCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChH
Q psy3752         332 DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM  406 (1012)
Q Consensus       332 ~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~  406 (1012)
                      ||..|++||+||+++||||||||||||||++|||||||||||++||+|++|+|+++|++++.  ++-+...|++|
T Consensus       126 Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~~SI~li~~lLar~Vl~~rG--~~~r~~~~~v~  198 (249)
T PTZ00254        126 DPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAREVLRLRG--TLPRDEEWDVM  198 (249)
T ss_pred             CCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchHHHHHHHHHHHHHHHHHhhC--ccccCCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999885  44445555554

>cd00520 RRF Ribosome recycling factor (RRF)

Probab=100.00  E-value=2.6e-50  Score=407.07  Aligned_cols=178  Identities=49%  Similarity=0.724  Sum_probs=176.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHHHHhc
Q psy3752         833 KKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEA  912 (1012)
Q Consensus       833 ~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai~~s  912 (1012)
                      +++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++++++|+|+|||++++++|++||++|
T Consensus         2 ~~~~~~~m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s   81 (179)
T cd00520           2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS   81 (179)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHH
Q psy3752         913 NLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTD  992 (1012)
Q Consensus       913 ~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~  992 (1012)
                      |||+||++||++|||+||+||+|+|++++|.+|+.+|++|++|||+||++++++|++++++.+|||+.++++++||++||
T Consensus        82 ~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd  161 (179)
T cd00520          82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD  161 (179)
T ss_pred             CCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q psy3752         993 KFILEINQLLINKEKEIL 1010 (1012)
Q Consensus       993 ~~~~~id~~~~~kekel~ 1010 (1012)
                      +|++++|++++.||||||
T Consensus       162 ~~i~~id~~~~~Kekeim  179 (179)
T cd00520         162 EYIKKIDELLKSKEKELL  179 (179)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999999998

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.

>KOG0832|consensus

Probab=100.00  E-value=5.4e-50  Score=396.67  Aligned_cols=198  Identities=35%  Similarity=0.622  Sum_probs=177.5

Q ss_pred             ccccchhhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHH
Q psy3752         167 MESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGV  246 (1012)
Q Consensus       167 ~~~lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~  246 (1012)
                      ...++ ++.|+.+|+|+||++..|||.|+|||||.|+|+|||||++|..+|++|++|++.++..||.||||||++.+...
T Consensus        45 ~~~~~-v~~L~~agvHlGh~t~~wn~~m~pyiyG~R~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~  123 (251)
T KOG0832|consen   45 PELIS-VEELFNAGVHLGHKTGKWNPRMKPYIYGKRLGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDL  123 (251)
T ss_pred             hhhcc-HHHHHhccccccccccccCcccchhhcccccCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHH
Confidence            34566 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCC
Q psy3752         247 IANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPD  326 (1012)
Q Consensus       247 v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~  326 (1012)
                      |+.+|+++|++|++.+|+||+||||.++..+..+           .|..++++-             .|    -.+-.||
T Consensus       124 ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~-----------~~~~~pd~~-------------~f----~~t~~~D  175 (251)
T KOG0832|consen  124 VERAARRAGGYSHNRKWLGGLLTNARELFGALVR-----------KFLSLPDAL-------------CF----LPTLTPD  175 (251)
T ss_pred             HHHHHHHhcCceeeeeeccceeecchhhcccccc-----------cccCCCcce-------------ee----cccCCcc
Confidence            9999999999999999999999999987554432           121122211             11    1223679


Q ss_pred             EEEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752         327 AIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  393 (1012)
Q Consensus       327 ~~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~  393 (1012)
                      +|||+||.+++.|++||.+++|||||||||||+|++|||||||||||+.|+.|+++++..||.+|+.
T Consensus       176 ~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~  242 (251)
T KOG0832|consen  176 LVVVLNPEENHSAILEAAKMAIPTIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQ  242 (251)
T ss_pred             eeEecCcccccHHHHHHHHhCCCeEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999874

>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []

Probab=100.00  E-value=2.8e-44  Score=360.90  Aligned_cols=165  Identities=48%  Similarity=0.713  Sum_probs=160.7

Q ss_pred             HHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHHHHhcCCCCCcccCCCeE
Q psy3752         846 ILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNII  925 (1012)
Q Consensus       846 ~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~p~~~~~~i  925 (1012)
                      ||+++|+++|+||+||++||+|+|++||+++||+++|||+++++++|+|+|||++++++|++||++|+||+||+.||+.|
T Consensus         1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i   80 (165)
T PF01765_consen    1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI   80 (165)
T ss_dssp             HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred             ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3752         926 YVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 1005 (1012)
Q Consensus       926 ~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq~~~~~~~~~id~~~~~k 1005 (1012)
                      +|+||+||+|+|++++|.+|+.+|+||++||++|+++++++|++++++.+|+|+.++++++||++||+|++++|++++.|
T Consensus        81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k  160 (165)
T PF01765_consen   81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK  160 (165)
T ss_dssp             EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh
Q psy3752        1006 EKEIL 1010 (1012)
Q Consensus      1006 ekel~ 1010 (1012)
                      |||||
T Consensus       161 ekell  165 (165)
T PF01765_consen  161 EKELL  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHhhC
Confidence            99998

Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....

>PRK12332 tsf elongation factor Ts; Reviewed

Probab=100.00  E-value=1.6e-41  Score=345.13  Aligned_cols=147  Identities=46%  Similarity=0.631  Sum_probs=140.2

Q ss_pred             hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEe--CCEEEEEEEecCchh
Q psy3752         390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDF  467 (1012)
Q Consensus       390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~--~~~~~lve~~~etdf  467 (1012)
                      +..++|+||++||+||||||+||.+++||+|+|++|||++|.++|+||++|.|+||+|++|+|  ++.|+|||+||||||
T Consensus         4 ~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDF   83 (198)
T PRK12332          4 TAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCETDF   83 (198)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEeccCCc
Confidence            456799999999999999999999999999999999999999999999999999999999999  899999999999999


Q ss_pred             hhcchHHHHHHHHHHHHHHhcCCCChhH----------------------------------------------hhcccc
Q psy3752         468 VAKNNEFIKFSKKIAKLITENTPINLDQ----------------------------------------------LNNLKI  501 (1012)
Q Consensus       468 va~~~~f~~l~~~ia~~iaa~~p~~~~~----------------------------------------------l~q~~~  501 (1012)
                      ||+|+.|+.|+++||||||+++|.+++.                                              +.|+|+
T Consensus        84 Va~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~~~gKP~~i~ekiv~Grl~K~~~E~~Ll~Q~fv  163 (198)
T PRK12332         84 VARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFI  163 (198)
T ss_pred             cccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHHHHHHHhhhhhhcCccc
Confidence            9999999999999999999999987544                                              578999


Q ss_pred             cCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCe
Q psy3752         502 KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNN  536 (1012)
Q Consensus       502 ~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~  536 (1012)
                      .|++.||++++.+.++++||||+|+||.||++|||
T Consensus       164 ~d~~~TV~e~l~e~~a~iGEnI~V~rF~R~evGeg  198 (198)
T PRK12332        164 KDPSKTVEDLIKEAIAKIGENIVVRRFARFELGEG  198 (198)
T ss_pred             CCCCccHHHHHHHHHHHhCCCeEEEEEEEEEcCCC
Confidence            98889999999999999999999999999999985

>CHL00098 tsf elongation factor Ts

Probab=100.00  E-value=8.6e-41  Score=339.10  Aligned_cols=147  Identities=46%  Similarity=0.601  Sum_probs=140.6

Q ss_pred             hhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccccccCceEEEEEe--CCEEEEEEEecCchhh
Q psy3752         391 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFV  468 (1012)
Q Consensus       391 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~~~eG~v~~~~~--~~~~~lve~~~etdfv  468 (1012)
                      ..++|+||++||+||||||+||.+++||+|+|++|||++|.++|+||++|.|++|.|++|+|  +++|||||+|||||||
T Consensus         2 a~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a~kk~~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfV   81 (200)
T CHL00098          2 AELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIESYIHTGGKLGVLVEINCETDFV   81 (200)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhccccccCeEEEEEecCCCEEEEEEEecCcccc
Confidence            45789999999999999999999999999999999999999999999999999999999998  7999999999999999


Q ss_pred             hcchHHHHHHHHHHHHHHhc-CCCChhH----------------------------------------------hhcccc
Q psy3752         469 AKNNEFIKFSKKIAKLITEN-TPINLDQ----------------------------------------------LNNLKI  501 (1012)
Q Consensus       469 a~~~~f~~l~~~ia~~iaa~-~p~~~~~----------------------------------------------l~q~~~  501 (1012)
                      |+|+.|++||++|||||||+ +|.+++.                                              |+|+|+
T Consensus        82 Arn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~~~~gKp~~i~ekiv~Grl~k~~~e~~LLeQ~fv  161 (200)
T CHL00098         82 ARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFI  161 (200)
T ss_pred             cccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhHHHHHHHHhhhhcCccc
Confidence            99999999999999999999 6876544                                              789999


Q ss_pred             cCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCee
Q psy3752         502 KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL  537 (1012)
Q Consensus       502 ~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~i  537 (1012)
                      +|++.||++++++.++++|||++|+||.||++|||+
T Consensus       162 ~D~~~TV~~~l~e~~akiGeni~V~rF~R~~vGegi  197 (200)
T CHL00098        162 RDQSITVEELIKQNIAKLGENIQIRRFARFTLGEGE  197 (200)
T ss_pred             CCCCccHHHHHHHHHHhcCCCcEEEEEEEEEecCCc
Confidence            999999999999999999999999999999999986

>KOG4759|consensus

Probab=100.00  E-value=2.4e-40  Score=337.29  Aligned_cols=193  Identities=39%  Similarity=0.521  Sum_probs=180.3

Q ss_pred             ceEEEEeeehhhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeec
Q psy3752         818 GTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPF  897 (1012)
Q Consensus       818 GT~I~~~~~~~~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~  897 (1012)
                      ||....+.....+.+..++.++|+++++.|+++|.++++||++|.++|+|.|+++|.+.||++||+||+++|++|+|+||
T Consensus        70 ~~~~in~~~~e~~~~~~~~~sqmek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn~~  149 (263)
T KOG4759|consen   70 GTEKINEAELEENAVEAKANSQMEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILINPF  149 (263)
T ss_pred             chhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEecc
Confidence            44433333344567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-cccHHHHHHHHHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3752         898 E-KEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILS  976 (1012)
Q Consensus       898 d-~~~~~~i~~ai~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s  976 (1012)
                      | |..+++|++||.+|+||+||++||++|+|+|||+|.|+|++|+|.+++++|++|.+||++|++++++++|.++.  ++
T Consensus       150 d~p~~ikai~kAI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~--~~  227 (263)
T KOG4759|consen  150 DFPVDIKAILKAIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS--LS  227 (263)
T ss_pred             cCchHHHHHHHHHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CC
Confidence            9 99999999999999999999999999999999999999999999999999999999999999999988876543  99


Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3752         977 VDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus       977 ~D~~~~~~~~iq~~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
                      +|+++++++++|+++|+|++++|++++.||||||..
T Consensus       228 ~D~vkkae~~l~~l~k~~v~~ld~llkskeKellk~  263 (263)
T KOG4759|consen  228 EDEVKKAEAELQKLAKDAVNKLDDLLKSKEKELLKQ  263 (263)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999863

>KOG1071|consensus

Probab=100.00  E-value=2.7e-40  Score=342.91  Aligned_cols=187  Identities=33%  Similarity=0.482  Sum_probs=164.3

Q ss_pred             hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhh----hhhhhhccccccCceEEEEEeCCEEEEEEEecCc
Q psy3752         390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLG----KKILNISNRNAKDGVIAIYISEKVGSLVEINCET  465 (1012)
Q Consensus       390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~----~~a~k~~~r~~~eG~v~~~~~~~~~~lve~~~et  465 (1012)
                      .-..+|+||++||++|++|||||+|||||+.+|.+||+|+++    .+|+|+++|.|+||+|++|+|+..+||||+||||
T Consensus        46 ~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k~aqk~g~~~A~K~~sR~t~eGlIgv~~~~~r~vlvElNCET  125 (340)
T KOG1071|consen   46 SKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHKKAQKEGWSKAAKKASRTTKEGLIGVLQEDGRTVLVELNCET  125 (340)
T ss_pred             cHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhhHHhhhcccccccceeEEEEeCCeEEEEEeeccc
Confidence            344689999999999999999999999999999999999965    4599999999999999999997777999999999


Q ss_pred             hhhhcchHHHHHHHHHHHHHHh------cCCCChh-------------------HhhcccccCCCccHHHHHHHHHHHhC
Q psy3752         466 DFVAKNNEFIKFSKKIAKLITE------NTPINLD-------------------QLNNLKIKNNLLTVDEKCKELISRIG  520 (1012)
Q Consensus       466 dfva~~~~f~~l~~~ia~~iaa------~~p~~~~-------------------~l~q~~~~~~~~tv~~~~~~~~~~~g  520 (1012)
                      ||||||+.||.|+.+||+.+++      .+|..++                   -+.+.+..+++.||+|.+.+.|+++|
T Consensus       126 DFVARn~~Fq~Lv~~iA~~~l~~~~~~~~~~s~~s~e~~l~~~~~g~kl~~~~~~l~~~~d~~gkvsl~d~l~~~i~~~G  205 (340)
T KOG1071|consen  126 DFVARNDIFQDLVDQIALSVLAHCQTLKTKHSSYSKEKELEMDGRGFKLSESLSLLPNLPDVEGKVSLKDQLALAIGKLG  205 (340)
T ss_pred             chhhccchHHHHHHHHHHHHHHhhhhcccChhhhhhhhhccccchHHHhhHHHhhccCCCCcccceeHHHHHHHHHHHhc
Confidence            9999999999999999998877      2333222                   15677777788899999999999999


Q ss_pred             CceEEEEEEEeecCCe--eeeeccC------------CceEEEEEecCCch------HHHHHHHHHHhccCCcccC
Q psy3752         521 ENIKIRRFKLFKTNNN--LISYLHD------------NKIGVIVEYNGDNE------SAVKDVAMHIAAMKPIALS  576 (1012)
Q Consensus       521 eni~v~rf~~~~~g~~--i~~y~H~------------~~~g~~v~~~~~~~------~~~~~~amhi~a~~p~~~~  576 (1012)
                      |||+|+|+.+|..++|  +++|.|+            |++|+||.++...+      .+++.||+||++|+|..+.
T Consensus       206 ENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~~~~~~~~~i~q~ivgm~p~s~~  281 (340)
T KOG1071|consen  206 ENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLTSLEDVAKQICQHIVGMSPESVG  281 (340)
T ss_pred             cceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhhhHHHHHHHHHHHhhccChhhhc
Confidence            9999999999998664  9999995            38999998876433      4789999999999999876

>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=5.8e-38  Score=318.47  Aligned_cols=233  Identities=50%  Similarity=0.796  Sum_probs=223.2

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII  668 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1012)
                      ++++++|+  +|+++.++.+..+|.+.+.+++++|+++.+.|.+|.||.|||+.++++.....++++...|+++|+++.+
T Consensus         5 ~~rillkL--sGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvm   82 (238)
T COG0528           5 YMRILLKL--SGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVM   82 (238)
T ss_pred             eEEEEEEe--ecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHH
Confidence            45678898  8998887777889999999999999999999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeec
Q psy3752         669 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK  748 (1012)
Q Consensus       669 ~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTD  748 (1012)
                      |+.+|.++|...|++++.+|+..+.++.++++.+...+.|+.|.|+|++|+.|+|++|+|+.|+++|..++||.|+..|+
T Consensus        83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn  162 (238)
T COG0528          83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATN  162 (238)
T ss_pred             HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEecc
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999995


Q ss_pred             -cccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         749 -VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       749 -VdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                       |||||++||+++|+|+++++++|.|+++.+..++|++|+.+++++++|++++|..+++++.+++.|+.+||+|.+
T Consensus       163 ~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~  238 (238)
T COG0528         163 KVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP  238 (238)
T ss_pred             CCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence             999999999999999999999999999999999999999999999999999999999999999999999999863

>PRK14556 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=1.6e-36  Score=318.89  Aligned_cols=233  Identities=45%  Similarity=0.681  Sum_probs=218.9

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-cCCCcchHHHHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-QNIDRSTADYMGMLATI  667 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-~~~~~~~~~~~~~~~~~  667 (1012)
                      ++++++|+  +|+++.+.++..+|.+.+..++++|+++.+.|+++.||+|||+.+++..... .++++..+|+++|+++.
T Consensus        15 ~~rvllKl--sGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~   92 (249)
T PRK14556         15 LKRILLKL--SGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATM   92 (249)
T ss_pred             hCEEEEEE--ehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHH
Confidence            57889998  9999887777789999999999999999999999999999999999855553 46899999999999999


Q ss_pred             HHHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeee
Q psy3752         668 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT  747 (1012)
Q Consensus       668 ~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilT  747 (1012)
                      +|+.+|.++|.+.|++++.+++.......++++.+.+.+.++.|.|||++|+.|+|++|+|++|+++|..++||+|+++|
T Consensus        93 iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~T  172 (249)
T PRK14556         93 INALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKAT  172 (249)
T ss_pred             HHHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEe
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         748 KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       748 DVdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      |||||||+||+.+|+|++++++++.+..+.+..+++..|+++|.++|+|++|+|+.+|++|.+++.|+.+||+|+-
T Consensus       173 dVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~  248 (249)
T PRK14556        173 TVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL  248 (249)
T ss_pred             CCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence            9999999999999999999999999888777788899999999999999999999999999999999999999963

>PRK14558 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=3e-33  Score=299.06  Aligned_cols=229  Identities=41%  Similarity=0.655  Sum_probs=196.3

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHH
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS  670 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (1012)
                      ++|+|+  +|+.++++++..++.+.+++++++|+++++.|++++||||||+++++...  .+++....+.+++....+++
T Consensus         2 riviKl--Ggs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~--~~~~~~~~d~ig~~~~~ln~   77 (231)
T PRK14558          2 RVLLKL--SGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVEL--KELSPTRADQIGMLGTVINA   77 (231)
T ss_pred             eEEEEe--eHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhc--cCCChHHHHHHHHHHHHHHH
Confidence            467884  44444444456799999999999999999999999999999988775432  24555567888887777777


Q ss_pred             HHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeeccc
Q psy3752         671 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD  750 (1012)
Q Consensus       671 ~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVd  750 (1012)
                      .++..+|..+|++++.+++............+.+..+++.|.|||++|+.|.+..++|++|+++|..++||.|+++||||
T Consensus        78 ~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVd  157 (231)
T PRK14558         78 LYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVD  157 (231)
T ss_pred             HHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCC
Confidence            77899999999999887764322222345578889999999999999998889999999999999999999999999999


Q ss_pred             cccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         751 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       751 GVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      ||||+||+.+|+|+++++++++|+.+.|.+++|+.|+++|.++|++++|+||.+|+++.+++.|+.+||+|.+
T Consensus       158 Gvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~  230 (231)
T PRK14558        158 GIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP  230 (231)
T ss_pred             eeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence            9999999999999999999999998888899999999999999999999999999999999999999999965

>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=100.00  E-value=1.4e-33  Score=295.00  Aligned_cols=154  Identities=43%  Similarity=0.692  Sum_probs=134.7

Q ss_pred             ccCceEEEEEeCCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhHhhcccccCCCccHHHHHHHHHHHhCC
Q psy3752         442 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGE  521 (1012)
Q Consensus       442 ~~eG~v~~~~~~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~l~q~~~~~~~~tv~~~~~~~~~~~ge  521 (1012)
                      |+||+|+++++++.|+|||+||||||||||+.|++|+++||..++...+.+++++.+..+.+  .||+|.+.++++++||
T Consensus         1 a~EG~V~~~v~~~~a~~vElncETDFVArn~~F~~l~~~ia~~~~~~~~~~~~~l~~~~~~~--~tv~d~i~~~i~~igE   78 (221)
T PF00889_consen    1 AAEGLVGIAVSGDKAAMVELNCETDFVARNEEFQNLAKEIADAALENKASDVEELLALPLAS--KTVKDAIAELIAKIGE   78 (221)
T ss_dssp             --EEEEEEEEETTEEEEEEEEESSHHHHTSHHHHHHHHHHHHHHHCTTEESHHHHHHSB--S--SHHHHHHHHHHHHH-S
T ss_pred             CCceEEEEEEeCCcEEEEEEEccccceecCHHHHHHHHHHHHHHHHhCCCCHHHHHhccccc--ccHHHHHHHHHHHhCC
Confidence            57999999999888999999999999999999999999999999988888999998887765  7999999999999999


Q ss_pred             ceEEEEEEEeec-CCeeeeeccC-CceEEEEEecCCch---HHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHH
Q psy3752         522 NIKIRRFKLFKT-NNNLISYLHD-NKIGVIVEYNGDNE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA  596 (1012)
Q Consensus       522 ni~v~rf~~~~~-g~~i~~y~H~-~~~g~~v~~~~~~~---~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~  596 (1012)
                      ||+|+||.+++. ++.+++|+|+ ||+|+||.+++.++   ++|++||||||||+|.+++++++|++++++|++++..++
T Consensus        79 nI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~~~~~E~~i~~~~~  158 (221)
T PF00889_consen   79 NIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSAKEFAKDIAMHIAAMNPKYLSEEDVPAEVLEKEKEIAKEQA  158 (221)
T ss_dssp             -EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGGHHHHHHHHHHHHHH--SBSSCTGS-CCHHHHHHHHHHHHH
T ss_pred             CEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchHHHHHHHHHHHHhhhCccccCcccCCHHHHHHHHHHHHHHh
Confidence            999999999987 3569999999 89999999999876   799999999999999999999999999999999888776


Q ss_pred             H
Q psy3752         597 Q  597 (1012)
Q Consensus       597 ~  597 (1012)
                      .
T Consensus       159 ~  159 (221)
T PF00889_consen  159 K  159 (221)
T ss_dssp             H
T ss_pred             h
Confidence            3

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....

>PRK00358 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=3.8e-33  Score=298.89  Aligned_cols=229  Identities=52%  Similarity=0.841  Sum_probs=199.2

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHH
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL  671 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1012)
                      +|+|+  +|+++..+.+..++.+.+++++++|+++++.|+++|||||||+.++++.....+++...+++.+++++.+++.
T Consensus         3 iViK~--GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~   80 (231)
T PRK00358          3 VLLKL--SGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATADYMGMLATVMNAL   80 (231)
T ss_pred             EEEEe--ccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH
Confidence            56785  5665554555678999999999999999999999999999998888765322355556788999988888988


Q ss_pred             HHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecccc
Q psy3752         672 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG  751 (1012)
Q Consensus       672 ~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVdG  751 (1012)
                      +|+..|..+|+++..+++.........+..+.+.++|++|.|||++|+.|++..++|++|+++|.+|+||+|+++|||||
T Consensus        81 ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVdG  160 (231)
T PRK00358         81 ALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDG  160 (231)
T ss_pred             HHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcCc
Confidence            89999999999998776655544444455677889999999999999888888999999999999999999999999999


Q ss_pred             ccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       752 Vy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      |||+||+.+|+|++|++++++++.+.|++++|++|+++|.++|++++|+||.+|+++.++++|+..||+|.
T Consensus       161 Vy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T PRK00358        161 VYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS  231 (231)
T ss_pred             eEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence            99999999999999999999988777888999999999999999999999999999999999999999984

>PRK14557 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=6.3e-33  Score=296.16  Aligned_cols=236  Identities=39%  Similarity=0.641  Sum_probs=206.9

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII  668 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1012)
                      ++++|+|+  +|+++.+++...++.+.+++++++|+++.+.|++++||||||+.+++......++++..+|+++++++.+
T Consensus         4 ~~riViKl--GG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~~~~~D~ig~~g~~l   81 (247)
T PRK14557          4 YKRVLIKL--SGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTII   81 (247)
T ss_pred             ccEEEEEe--CceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            56788998  8888876555678899999999999999999999999999998887544444456777889999999999


Q ss_pred             HHHHHHHHHHhc-CCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEee-
Q psy3752         669 NSLALFDILNKS-GIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA-  746 (1012)
Q Consensus       669 ~~~~l~~~l~~~-gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liil-  746 (1012)
                      ++.++..+|... +..+..++...+.....++....+.+.|++|.|||++|++|.+.+|+|++|+++|..++||.|+++ 
T Consensus        82 na~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~t  161 (247)
T PRK14557         82 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAK  161 (247)
T ss_pred             HHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEec
Confidence            999999998874 677666676666666666666778888999999999999999999999999999999999999999 


Q ss_pred             eccccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEeee
Q psy3752         747 TKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI  826 (1012)
Q Consensus       747 TDVdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~  826 (1012)
                      ||||||||+||+.+|+|++|+++++.|+...+..+++..|+++|.++|++++|+||.+|++|.++++|+.+||+|.+.+.
T Consensus       162 tdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~~  241 (247)
T PRK14557        162 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS  241 (247)
T ss_pred             CCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCcc
Confidence            59999999999999999999999998886666677888999999999999999999999999999999999999987654

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

Probab=100.00  E-value=1.8e-32  Score=292.90  Aligned_cols=228  Identities=49%  Similarity=0.814  Sum_probs=203.3

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHH
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL  671 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1012)
                      +|+|+   |++++++++..++.+.+++++++|+++++.|++++||||||..+.++.....++++...+++++.++.+++.
T Consensus         2 iViKi---GGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~   78 (229)
T cd04239           2 IVLKL---SGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATADYIGMLATVMNAL   78 (229)
T ss_pred             EEEEE---CcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCChhhHHHHHHHHHHHHHH
Confidence            46674   444555545589999999999999999999999999999998877766555556666789999999999999


Q ss_pred             HHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecccc
Q psy3752         672 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG  751 (1012)
Q Consensus       672 ~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVdG  751 (1012)
                      +|+.+|..+|+++..+++.++......++.+.+..+++.|.|||++|+.|.+..++|++|+++|..++||+|+++|||||
T Consensus        79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdG  158 (229)
T cd04239          79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDG  158 (229)
T ss_pred             HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCc
Confidence            99999999999999999988766656678889999999999999999989888999999999999999999999999999


Q ss_pred             ccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       752 Vy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      |||+||+.+|++++|++++++++.+.+++++|++|++++.++|++++|+||+.|+++.++++|+..||+|.
T Consensus       159 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  229 (229)
T cd04239         159 VYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE  229 (229)
T ss_pred             ccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence            99999999999999999999998887779999999999999999999999999999999999998999873

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als

>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=100.00  E-value=1e-32  Score=294.80  Aligned_cols=229  Identities=54%  Similarity=0.873  Sum_probs=202.1

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHH
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL  671 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1012)
                      +|+|+  +|++++++++..++.+.+++++++|+++...|+++|||||||+++++......+......++++++....+..
T Consensus         3 iViKl--GGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~~~~~~~d~~g~~~~~~n~~   80 (231)
T cd04254           3 VLLKL--SGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATADYMGMLATVINAL   80 (231)
T ss_pred             EEEEe--CceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcCCCchhhhHHHHHHHHHHHH
Confidence            56786  7777776667888999999999999999888999999999998754433333344444668888887777888


Q ss_pred             HHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecccc
Q psy3752         672 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG  751 (1012)
Q Consensus       672 ~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVdG  751 (1012)
                      +++..|..+|+++..+++.+...+...++...+..++++|.|||++|+.|.+.+++|++|+++|..++||+|+++|||||
T Consensus        81 ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdG  160 (231)
T cd04254          81 ALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDG  160 (231)
T ss_pred             HHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCE
Confidence            89999999999999999988754445677899999999999999999988999999999999999999999999999999


Q ss_pred             ccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       752 Vy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      ||++||+.+|+++++++++++++.+.|..++|++++++|.++|++++|+||.+|++|.++|+|+.+||+|+
T Consensus       161 vy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T cd04254         161 VYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS  231 (231)
T ss_pred             EEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence            99999999999999999999998887888899999999999999999999999999999999999999984

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be

>TIGR02075 pyrH_bact uridylate kinase

Probab=100.00  E-value=1.3e-32  Score=294.09  Aligned_cols=231  Identities=57%  Similarity=0.845  Sum_probs=203.4

Q ss_pred             HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHH
Q psy3752         590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN  669 (1012)
Q Consensus       590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1012)
                      +++|+|+  +|+++...++..++.+.+++++++|+++...|+++|||||||+.+.+......+.+....++++++.+.++
T Consensus         2 ~~iViKl--GGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~~~d~~g~~~~~l~   79 (233)
T TIGR02075         2 KRVLLKL--SGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRVTADYMGMLATVIN   79 (233)
T ss_pred             CEEEEEe--ChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            3567886  67766665566789999999999999998889999999999988766543333455555789999999999


Q ss_pred             HHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeec-
Q psy3752         670 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK-  748 (1012)
Q Consensus       670 ~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTD-  748 (1012)
                      +.+++.+|..+|+++..+++.++......+..+.+.+++++|.|||+.|+.|.+..++|++|++||..++||+|+|+|| 
T Consensus        80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~  159 (233)
T TIGR02075        80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG  159 (233)
T ss_pred             HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence            9999999999999999999988763333456788999999999999999988999999999999999999999999999 


Q ss_pred             cccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         749 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       749 VdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      ||||||+||+.+|++++|++++++|+.+.|....|++++++|.++|++++|+||.+|++|.++++|+.+||+|+
T Consensus       160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~  233 (233)
T TIGR02075       160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS  233 (233)
T ss_pred             cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence            99999999999999999999999998877777899999999999999999999999999999999999999984

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=99.97  E-value=3.7e-31  Score=282.37  Aligned_cols=224  Identities=18%  Similarity=0.220  Sum_probs=192.9

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc----chHhhhhcccccCCCcchHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQNIDRSTADYMGML  664 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG----G~~~~~~~~~~~~~~~~~~~~~~~~  664 (1012)
                      .+++|+|   .|+++++.+.+.++...+..++++|+.|+..|++||||+||    |...+++...     |..+...+.+
T Consensus         6 ~~riVvK---iGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~r-----p~~l~~kQA~   77 (369)
T COG0263           6 ARRIVVK---IGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKR-----PKTLAEKQAA   77 (369)
T ss_pred             ceEEEEE---ECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCC-----CcchHHHHHH
Confidence            3578899   78888888788899999999999999999999999999888    4444444444     4556777789


Q ss_pred             HHHHHHHHHHHH---HHhcCCce--eEeehhchhhhhhhcch-HHHHHHhhCCCEEEEcCcCCCCCCc----------cH
Q psy3752         665 ATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGIGNPFFT----------TD  728 (1012)
Q Consensus       665 ~~~~~~~~l~~~---l~~~gi~a--~~l~~~~~~~~~~~~~~-~~l~~~L~~g~VPVi~G~~g~~~~s----------~D  728 (1012)
                      ++.+|..+|..|   |..+|+..  +.++..++....+..|. ..+..+|+.|.||||+     ++++          ||
T Consensus        78 AAVGQ~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIIN-----ENDtva~~EikfGDND  152 (369)
T COG0263          78 AAVGQVRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIIN-----ENDTVATEEIKFGDND  152 (369)
T ss_pred             HHhCHHHHHHHHHHHHHhcCCeeeEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeec-----CCCceeeeeeeecCCc
Confidence            999999999888   88998877  78888888777776765 5788889999999994     3333          99


Q ss_pred             HHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCH--HHHHh----------hhcCcccHHHHHHHHhCCCc
Q psy3752         729 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLP  796 (1012)
Q Consensus       729 ~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~--~e~~~----------~G~~v~~~~aa~~a~~~gi~  796 (1012)
                      ++||.+|.+++||+|++||||||+||+||+.+|+|++|++++.  .++..          +|||.+|+.|+++|.++|++
T Consensus       153 ~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~  232 (369)
T COG0263         153 TLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVP  232 (369)
T ss_pred             hHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999999999999999999998874  34433          79999999999999999999


Q ss_pred             EEEEecCCchhHHHHhcCCCcceEEEEee
Q psy3752         797 IRVFSIIKSGALKRVIEGKNEGTLVYEIY  825 (1012)
Q Consensus       797 v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~  825 (1012)
                      ++|++|..|+.+.+++.|+..||+|.|..
T Consensus       233 ~iI~~g~~~~~i~~~~~~~~~GT~F~~~~  261 (369)
T COG0263         233 VIIASGSKPDVILDALEGEAVGTLFEPQA  261 (369)
T ss_pred             EEEecCCCcchHHHHHhCCCCccEEecCC
Confidence            99999999999999999999999999763

>KOG0830|consensus

Probab=99.97  E-value=1.6e-30  Score=259.58  Aligned_cols=155  Identities=23%  Similarity=0.302  Sum_probs=146.7

Q ss_pred             CCCCcceeeccc-CCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCcccc
Q psy3752         191 NPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT  269 (1012)
Q Consensus       191 np~m~~yi~~~r-~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lT  269 (1012)
                      +..|.+|+|++| +|+|||||.+||++|..|++.|..+ +|+..|.++++|+.++++|.+||..+|...|.+||+||+||
T Consensus         2 ~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~ai-enp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft   80 (254)
T KOG0830|consen    2 NFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT   80 (254)
T ss_pred             CcccccccccccCCceEEeeccccHHHHHHHHHHHhhc-cCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccc
Confidence            678999999998 5999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCchhHHHHHHhcCCC
Q psy3752         270 NFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP  349 (1012)
Q Consensus       270 N~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~~ai~Ea~~l~iP  349 (1012)
                      |+.+  ++               |                             +.|.++||+||+.|++++.|++..|+|
T Consensus        81 n~iq--~~---------------f-----------------------------~epr~lvvtdpr~d~q~~~E~s~~n~p  114 (254)
T KOG0830|consen   81 NQIQ--AA---------------F-----------------------------REPRLLVVTDPRADHQPLTEASYVNLP  114 (254)
T ss_pred             hHHH--Hh---------------h-----------------------------cCCceeeecCcccccchhhhhhhcCCc
Confidence            9653  11               1                             489999999999999999999999999


Q ss_pred             eEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhh
Q psy3752         350 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK  392 (1012)
Q Consensus       350 ~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~  392 (1012)
                      ||+||||||+..+||..|||||+|..||.+.+|+|++++++.+
T Consensus       115 ~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~ww~LareVLrmr  157 (254)
T KOG0830|consen  115 TIALCNTDSPLCYVDIAIPCNNKGAHSVGVMWWMLAREVLRMR  157 (254)
T ss_pred             eEEEecCCCccceeeeeeecCCCCcccchhhhhhhhHHHHHHH
Confidence            9999999999999999999999999999999999999998855

>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.95  E-value=9.1e-28  Score=255.11  Aligned_cols=209  Identities=26%  Similarity=0.394  Sum_probs=174.4

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccccc--CCCcchHHHHHHHHHHHH
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIIN  669 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  669 (1012)
                      +|+|+  +|++ ++++.   +.+.+++++++|+++.. |++++||||||+.++.+.....  +++....+++++..+.++
T Consensus         2 iViKl--GGs~-l~~~~---~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln   74 (221)
T cd04253           2 IVISL--GGSV-LAPEK---DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLN   74 (221)
T ss_pred             EEEEe--ccce-eCCCC---ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence            46775  5554 44433   78899999999998765 7899999999988877654432  244456789999999888


Q ss_pred             HHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecc
Q psy3752         670 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV  749 (1012)
Q Consensus       670 ~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDV  749 (1012)
                      +.++...+. .|++++.+            +.+.+.++|+.|.|||++|+.  +++|+|++|+++|..++||.|+++|||
T Consensus        75 ~~~~~~~l~-~~~~~~~~------------~~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdV  139 (221)
T cd04253          75 ARLLIAALG-DAYPPVPT------------SYEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNV  139 (221)
T ss_pred             HHHHHHHHh-cCCCcCCC------------CHHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCC
Confidence            888877776 67765543            345667889999999999975  578999999999999999999999999


Q ss_pred             ccccccCCcCCcCcccccccCHHHHHh---h-----h-cCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceE
Q psy3752         750 DGIYNSDPNKCLSAIIYKKITFDEVIS---K-----K-LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL  820 (1012)
Q Consensus       750 dGVy~~dP~~~~~a~~i~~i~~~e~~~---~-----G-~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~  820 (1012)
                      ||||++||+.+|++++|++++++++.+   .     | ++++|+++++++.++|++++|+||.+|++|.++|+|+.+||+
T Consensus       140 dGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~  219 (221)
T cd04253         140 DGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI  219 (221)
T ss_pred             CeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeE
Confidence            999999999999999999999988766   1     3 368899999999999999999999999999999999999999


Q ss_pred             EE
Q psy3752         821 VY  822 (1012)
Q Consensus       821 I~  822 (1012)
                      |.
T Consensus       220 I~  221 (221)
T cd04253         220 IE  221 (221)
T ss_pred             eC
Confidence            83

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi

>PRK12314 gamma-glutamyl kinase; Provisional

Probab=99.95  E-value=1e-27  Score=260.39  Aligned_cols=231  Identities=18%  Similarity=0.194  Sum_probs=172.1

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccccCCCcchHHHHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRSTADYMGMLATI  667 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (1012)
                      .+++|+|+   |++.++++.+.++.+.+++++++|+++++.|+++|||+|| |...+...... ..+....+....++.|
T Consensus         9 ~~~iViK~---Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~-~~~~~~~~~~a~aa~G   84 (266)
T PRK12314          9 AKRIVIKV---GSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLD-KRPTSLAEKQALAAVG   84 (266)
T ss_pred             CCEEEEEe---CCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccc-cCCCCHHHHHHHHHHh
Confidence            34678995   4455555556799999999999999999999999998565 44433333221 1111122223333333


Q ss_pred             H--HHHHHHHHHHhcCCce--eEeehhchhhhhh-hcchHHHHHHhhCCCEEEEcCcC-----CCC--CCccHHHHHHHH
Q psy3752         668 I--NSLALFDILNKSGIIS--HVMSAISIEKFLE-SYIPLNAIKYLEEGKVVIFAGGI-----GNP--FFTTDTTAALRA  735 (1012)
Q Consensus       668 ~--~~~~l~~~l~~~gi~a--~~l~~~~~~~~~~-~~~~~~l~~~L~~g~VPVi~G~~-----g~~--~~s~D~~Aa~lA  735 (1012)
                      +  ...++..+|..+|+++  +.++..++..... ......+..+++.|+||||++..     +..  ..++|++|++||
T Consensus        85 q~~l~~~~~~~~~~~g~~~~q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA  164 (266)
T PRK12314         85 QPELMSLYSKFFAEYGIVVAQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVA  164 (266)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHH
Confidence            3  3455666699999987  3445555532222 22356888889999999998521     111  345999999999


Q ss_pred             HhcCCceEEeeeccccccccCCcCCcCcccccccCH--HHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecC
Q psy3752         736 AEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSII  803 (1012)
Q Consensus       736 ~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~--~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~  803 (1012)
                      .+++||.|+|+|||||||++||+.+|+|++|+.+++  .+..+          +|+|++|+.|+..|.++|++++|+||+
T Consensus       165 ~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~  244 (266)
T PRK12314        165 KLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGF  244 (266)
T ss_pred             HHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCC
Confidence            999999999999999999999999999999998875  33322          379999999999999999999999999


Q ss_pred             CchhHHHHhcCCCcceEEEE
Q psy3752         804 KSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       804 ~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      +|++|.+++.|+.+||+|.+
T Consensus       245 ~~~~i~~~l~g~~~GT~i~~  264 (266)
T PRK12314        245 NPSDILDFLEGESIGTLFAP  264 (266)
T ss_pred             CchHHHHHHcCCCCceEEcc
Confidence            99999999999989999976

>PTZ00489 glutamate 5-kinase; Provisional

Probab=99.95  E-value=1.5e-27  Score=256.76  Aligned_cols=228  Identities=19%  Similarity=0.300  Sum_probs=174.5

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII  668 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1012)
                      .+++|+|   .|++++++++ .++...+..++++++++++ ++++||||||| .++++...  ++.......-+++++.+
T Consensus         8 ~~riVIK---lG~Svit~~~-~~~~~~~~~l~~~i~~l~~-~~~vilVssGa-va~g~~~~--~~~~~~~~~~qa~aaiG   79 (264)
T PTZ00489          8 VKRIVVK---VGSSILVDNQ-EIAAHRIEALCRFIADLQT-KYEVILVTSGA-VAAGYTKK--EMDKSYVPNKQALASMG   79 (264)
T ss_pred             CCEEEEE---eccceeeCCC-CcCHHHHHHHHHHHHHHhc-CCeEEEEecCh-HhcChhhc--CCCccccHHHHHHHHhC
Confidence            4678999   5666776543 5888899999999999976 79999999776 55444421  22223333455566666


Q ss_pred             HHHHHHHH---HHhcCCcee--Eeehhchhhhhhh-cchHHHHHHhhCCCEEEEcCcCCCCC----C-ccHHHHHHHHHh
Q psy3752         669 NSLALFDI---LNKSGIISH--VMSAISIEKFLES-YIPLNAIKYLEEGKVVIFAGGIGNPF----F-TTDTTAALRAAE  737 (1012)
Q Consensus       669 ~~~~l~~~---l~~~gi~a~--~l~~~~~~~~~~~-~~~~~l~~~L~~g~VPVi~G~~g~~~----~-s~D~~Aa~lA~~  737 (1012)
                      +..+|..+   |..+|+.+.  .++..++....+. .....+..+|+.|.|||++|....+.    + +||++|++||..
T Consensus        80 q~~L~~~y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~  159 (264)
T PTZ00489         80 QPLLMHMYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHH  159 (264)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHH
Confidence            66665555   889999874  3444444333222 23567888999999999987432222    2 699999999999


Q ss_pred             cCCceEEeeeccccccccCCcCCcCccc---ccccCHHHHHh---------hhcCcccHHHHHHHHhCCCcEEEEecCCc
Q psy3752         738 IKAEIILKATKVDGIYNSDPNKCLSAII---YKKITFDEVIS---------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS  805 (1012)
Q Consensus       738 l~Ad~liilTDVdGVy~~dP~~~~~a~~---i~~i~~~e~~~---------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~  805 (1012)
                      ++||+|+|+|||||||++||+.+|+|++   +++++.++...         +|||.+|+.|+..|.+.|++++|++|.+|
T Consensus       160 l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~  239 (264)
T PTZ00489        160 FKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHL  239 (264)
T ss_pred             hCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence            9999999999999999999999999998   67777765521         79999999999999999999999999999


Q ss_pred             hhHHHHhcCC--CcceEEEEe
Q psy3752         806 GALKRVIEGK--NEGTLVYEI  824 (1012)
Q Consensus       806 ~~i~~~l~Ge--~~GT~I~~~  824 (1012)
                      ++|.+++.|+  ..||+|.+.
T Consensus       240 ~~i~~~l~g~~~~~GT~~~~~  260 (264)
T PTZ00489        240 EKARDFLIGGSHEIGTLFYPR  260 (264)
T ss_pred             hHHHHHHcCCCCCCceEEeec
Confidence            9999999875  379999764

>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

Probab=99.95  E-value=1.3e-27  Score=260.79  Aligned_cols=230  Identities=17%  Similarity=0.155  Sum_probs=178.9

Q ss_pred             HHHHHHHHHhhhhhhhcCCCC-cccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccc-----------cCC--
Q psy3752         589 YSLAVLKAQQLGEALMKGDAY-NINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI-----------QNI--  653 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~-~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~-----------~~~--  653 (1012)
                      .+++|+|   .|++++++++. .++.+.+..++++|+.|++.|+++|||+|| |...+.+....           .+.  
T Consensus         8 ~~~iVvK---iGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~   84 (284)
T cd04256           8 AKRIVVK---LGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQL   84 (284)
T ss_pred             CCEEEEE---eCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccc
Confidence            5678999   67777765444 799999999999999999999999977666 33333322211           111  


Q ss_pred             --CcchHHHHHHHHHHHHHHHHHHH---HHhcCCce--eEeehhchhhh-hhhcchHHHHHHhhCCCEEEEcCcCC----
Q psy3752         654 --DRSTADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIG----  721 (1012)
Q Consensus       654 --~~~~~~~~~~~~~~~~~~~l~~~---l~~~gi~a--~~l~~~~~~~~-~~~~~~~~l~~~L~~g~VPVi~G~~g----  721 (1012)
                        .+......+++++.++..+|..|   |..+++++  +.++..++... ........+..+|+.|+||||+|+..    
T Consensus        85 ~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~~  164 (284)
T cd04256          85 KDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPP  164 (284)
T ss_pred             cCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCccccc
Confidence              23445556777777787777776   88888877  44455444332 22234567888899999999986222    


Q ss_pred             ----------CCCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh----------hhcCc
Q psy3752         722 ----------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEI  781 (1012)
Q Consensus       722 ----------~~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~----------~G~~v  781 (1012)
                                +...++|++|++||..++||.|+++|||||||++||+ +|++++|++++..+...          +|+|.
T Consensus       165 ~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~  243 (284)
T cd04256         165 PEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGME  243 (284)
T ss_pred             ccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCcH
Confidence                      1235799999999999999999999999999999996 69999999998755532          69999


Q ss_pred             ccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         782 MDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       782 ~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      +|+.|+..|.++|++++|++|..|++|.+++.|+.+||+|.
T Consensus       244 ~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~  284 (284)
T cd04256         244 AKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT  284 (284)
T ss_pred             HHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence            99999999999999999999999999999999999999983

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.

>TIGR02076 pyrH_arch uridylate kinase, putative

Probab=99.95  E-value=3e-27  Score=251.41  Aligned_cols=209  Identities=26%  Similarity=0.391  Sum_probs=174.4

Q ss_pred             HHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccccc--CCCcchHHHHHHHHHHHHH
Q psy3752         593 VLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIINS  670 (1012)
Q Consensus       593 v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  670 (1012)
                      |+|+  +|+ +++++.   +.+.+++++++|+++.+. ++++||||||+.++.+.....  +.+....+++++..+.++.
T Consensus         2 ViKl--GGs-~l~~~~---~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~   74 (221)
T TIGR02076         2 VISL--GGS-VLSPEI---DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNA   74 (221)
T ss_pred             EEEe--chh-hcCCCC---CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHH
Confidence            4564  444 554443   789999999999999876 899999999988877654433  3345567899999998898


Q ss_pred             HHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeeccc
Q psy3752         671 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD  750 (1012)
Q Consensus       671 ~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDVd  750 (1012)
                      .++...|...+++++..+            .....+.++.|.+||++|+.  +++|+|++|+++|.+++||+|+++||||
T Consensus        75 ~~l~~ll~~~~~~~~~~~------------~~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVd  140 (221)
T TIGR02076        75 MLLIAALGDDAYPKVPEN------------FEEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVD  140 (221)
T ss_pred             HHHHHHHHhcCCCCcCCC------------HHHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence            888877877777765432            33446678999999999974  7889999999999999999999999999


Q ss_pred             cccccCCcCCcCcccccccCHHHHHh--------hh-cCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEE
Q psy3752         751 GIYNSDPNKCLSAIIYKKITFDEVIS--------KK-LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV  821 (1012)
Q Consensus       751 GVy~~dP~~~~~a~~i~~i~~~e~~~--------~G-~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I  821 (1012)
                      |||++||+.+|++++|++++++++.+        .| +|.+|++|++++.+.|++++|+||..|+++.+++.|+..||+|
T Consensus       141 Gvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i  220 (221)
T TIGR02076       141 GVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII  220 (221)
T ss_pred             cccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence            99999999999999999999988765        14 5688999999999999999999999999999999999899998


Q ss_pred             E
Q psy3752         822 Y  822 (1012)
Q Consensus       822 ~  822 (1012)
                      .
T Consensus       221 ~  221 (221)
T TIGR02076       221 E  221 (221)
T ss_pred             C
Confidence            3

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=99.95  E-value=2.4e-27  Score=266.26  Aligned_cols=231  Identities=16%  Similarity=0.179  Sum_probs=174.0

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII  668 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1012)
                      .+++|+|+   |++.+++..+.++.+.+..++++|+++++.|+++|||||||. +.+..... ..........+++++.+
T Consensus         5 ~kriVIKi---Ggs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGav-a~G~~~l~-~~~~~~~~~~qalaavG   79 (368)
T PRK13402          5 WKRIVVKV---GSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAV-AAGYHKLG-FIDRPSVPEKQAMAAAG   79 (368)
T ss_pred             CcEEEEEE---chhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChh-hcCccccC-CCCCCCccHHHHHHHhh
Confidence            45789995   555555556679999999999999999999999999999972 12221110 01111222234444444


Q ss_pred             H---HHHHHHHHHhcCCceeEe--ehhchhhhhhhcc-hHHHHHHhhCCCEEEEcCcCCC-----CCCccHHHHHHHHHh
Q psy3752         669 N---SLALFDILNKSGIISHVM--SAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIGN-----PFFTTDTTAALRAAE  737 (1012)
Q Consensus       669 ~---~~~l~~~l~~~gi~a~~l--~~~~~~~~~~~~~-~~~l~~~L~~g~VPVi~G~~g~-----~~~s~D~~Aa~lA~~  737 (1012)
                      +   ...+...|..+|+++..+  +..++....+..+ ...+..+|+.|.||||+++...     ...+||++|+++|.+
T Consensus        80 q~~l~~~~~~~f~~~g~~~aqvLlT~~d~~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~  159 (368)
T PRK13402         80 QGLLMATWSKLFLSHGFPAAQLLLTHGDLRDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAAL  159 (368)
T ss_pred             HHHHHHHHHHHHHHCCCeEEEEEEecchhhhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHH
Confidence            3   344555699999998654  5555422111111 3678888999999999852211     112489999999999


Q ss_pred             cCCceEEeeeccccccccCCcCCcCcccccccCH--HHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecCCc
Q psy3752         738 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS  805 (1012)
Q Consensus       738 l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~--~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~  805 (1012)
                      ++||.|+|+||||||||+||+.+|++++|+++++  +++..          +|+|.+|+.|+..|.++|++++|+||..|
T Consensus       160 l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~  239 (368)
T PRK13402        160 ADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTA  239 (368)
T ss_pred             hCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCc
Confidence            9999999999999999999999999999999985  44432          68899999999999999999999999999


Q ss_pred             hhHHHHhcCCCcceEEEEe
Q psy3752         806 GALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       806 ~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      +.|.+++.|+..||+|.+.
T Consensus       240 ~~l~~~l~g~~~GT~i~~~  258 (368)
T PRK13402        240 DIFNQLLKGQNPGTYFTPE  258 (368)
T ss_pred             hHHHHHhcCCCCceEEecC
Confidence            9999999999999999875

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

Probab=99.94  E-value=1e-26  Score=251.76  Aligned_cols=226  Identities=18%  Similarity=0.198  Sum_probs=169.1

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccccCCCcch-HHHHHHHHHHH-
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRST-ADYMGMLATII-  668 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-  668 (1012)
                      +|+|+  +|++ +++....++.+.+.+++++|++++..|+++|||||| |...+.......+.  .. .....+++.|+ 
T Consensus         2 iViK~--GGs~-i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~~~~~--~~~~~~~~~~~~Gq~   76 (251)
T cd04242           2 IVVKV--GSSL-LTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEKRP--KTLPEKQALAAVGQS   76 (251)
T ss_pred             EEEEe--CCCe-eeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhccCcCC--CchhHHHHHHHHhHH
Confidence            46774  4554 444444468999999999999999999999999987 34433322221111  12 22233334443 


Q ss_pred             -HHHHHHHHHHhcCCceeE--eehhchhhhhhhc-chHHHHHHhhCCCEEEEcCcCC-----CCCCccHHHHHHHHHhcC
Q psy3752         669 -NSLALFDILNKSGIISHV--MSAISIEKFLESY-IPLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAEIK  739 (1012)
Q Consensus       669 -~~~~l~~~l~~~gi~a~~--l~~~~~~~~~~~~-~~~~l~~~L~~g~VPVi~G~~g-----~~~~s~D~~Aa~lA~~l~  739 (1012)
                       ...+++.+|..+|+++..  ++..++....... ..+.+..+++.|+|||++++..     ....++|++|+++|.+++
T Consensus        77 ~l~~~~~~~l~~~Gi~~~q~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~  156 (251)
T cd04242          77 LLMALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVN  156 (251)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcC
Confidence             345567779999999854  4444432111111 2467888899999999985211     123469999999999999


Q ss_pred             CceEEeeeccccccccCCcCCcCcccccccC--HHHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecCCchh
Q psy3752         740 AEIILKATKVDGIYNSDPNKCLSAIIYKKIT--FDEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGA  807 (1012)
Q Consensus       740 Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~--~~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~  807 (1012)
                      ||.|+|+|||||||++||+.+|++++|++++  ++++.+          .|+|.+|+.|+..+.++|++++|+||..|++
T Consensus       157 Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~  236 (251)
T cd04242         157 ADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDV  236 (251)
T ss_pred             CCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence            9999999999999999999999999999998  776543          5789899999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEE
Q psy3752         808 LKRVIEGKNEGTLVY  822 (1012)
Q Consensus       808 i~~~l~Ge~~GT~I~  822 (1012)
                      +.++++|+..||+|.
T Consensus       237 i~~~l~g~~~GT~i~  251 (251)
T cd04242         237 LLDILAGEAVGTLFL  251 (251)
T ss_pred             HHHHHcCCCCCeEeC
Confidence            999999999999983

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=99.94  E-value=1.3e-26  Score=263.26  Aligned_cols=231  Identities=22%  Similarity=0.237  Sum_probs=175.3

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchH-hhhhcccccCCCcchHHHHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATI  667 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~  667 (1012)
                      .+++|+|+   |++.++++++.++.+.+.+++++|+++++.|+++||||||+-. .........  .+......+++++.
T Consensus         8 ~~~iVIKi---GGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGai~~g~~~l~l~~--~~~~~~~~qa~aav   82 (372)
T PRK05429          8 ARRIVVKV---GSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGAVAAGRERLGLPE--RPKTLAEKQAAAAV   82 (372)
T ss_pred             CCEEEEEe---ChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccHhhhhHhhcCCCC--CCCchHHHHHHHHH
Confidence            45678994   5555555677899999999999999999999999999988411 111111111  11122223344433


Q ss_pred             HH---HHHHHHHHHhcCCceeEe--ehhchhhhhhhcc-hHHHHHHhhCCCEEEEcCcCC-----CCCCccHHHHHHHHH
Q psy3752         668 IN---SLALFDILNKSGIISHVM--SAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAA  736 (1012)
Q Consensus       668 ~~---~~~l~~~l~~~gi~a~~l--~~~~~~~~~~~~~-~~~l~~~L~~g~VPVi~G~~g-----~~~~s~D~~Aa~lA~  736 (1012)
                      ++   ...+...|..+|+++..+  +..++.......+ ...+..+++.|.|||++++..     ....++|++|++||.
T Consensus        83 Gq~~L~~~~~~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~  162 (372)
T PRK05429         83 GQSRLMQAYEELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVAN  162 (372)
T ss_pred             hHHHHHHHHHHHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHH
Confidence            33   344566699999998654  5555543333344 467888899999999985211     123569999999999


Q ss_pred             hcCCceEEeeeccccccccCCcCCcCcccccccCH--HHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecCC
Q psy3752         737 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIK  804 (1012)
Q Consensus       737 ~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~--~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~~  804 (1012)
                      +++||.|+|+|||||||++||+.+|++++|+++++  +++.+          +|+|.+|+.|+..|.++|++++|+||..
T Consensus       163 ~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~  242 (372)
T PRK05429        163 LVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGRE  242 (372)
T ss_pred             HcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            99999999999999999999999999999999976  33322          5789999999999999999999999999


Q ss_pred             chhHHHHhcCCCcceEEEEe
Q psy3752         805 SGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       805 ~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      |+++.+++.|+..||+|.+.
T Consensus       243 ~~~l~~~l~g~~~GT~i~~~  262 (372)
T PRK05429        243 PDVLLRLLAGEAVGTLFLPQ  262 (372)
T ss_pred             ccHHHHHhcCCCCCEEEeeC
Confidence            99999999999999999976

>TIGR01027 proB glutamate 5-kinase

Probab=99.94  E-value=2e-26  Score=260.54  Aligned_cols=229  Identities=20%  Similarity=0.199  Sum_probs=171.8

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHh-hhhcccccCCCcchHHHHHHHHHHHH
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNIC-RGISNKIQNIDRSTADYMGMLATIIN  669 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1012)
                      ++|+|   .|++.+++....++.+.+..++++|+++++.|+++|||||||..+ +...+..  -.+..+...+.+++.++
T Consensus         2 riVIK---iGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~g~~~lg~~--~~~~~l~~~qa~aa~Gq   76 (363)
T TIGR01027         2 RIVVK---VGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEALGLP--ERPKTLAEKQALAAVGQ   76 (363)
T ss_pred             eEEEE---eccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhcCccccCCC--CCccchHHHHHHHHhCh
Confidence            35778   455555554445999999999999999999999999999997432 2222211  11222333344444444


Q ss_pred             HHH---HHHHHHhcCCcee--Eeehhchhhhhhhcch-HHHHHHhhCCCEEEEcCcC-----CCCCCccHHHHHHHHHhc
Q psy3752         670 SLA---LFDILNKSGIISH--VMSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGI-----GNPFFTTDTTAALRAAEI  738 (1012)
Q Consensus       670 ~~~---l~~~l~~~gi~a~--~l~~~~~~~~~~~~~~-~~l~~~L~~g~VPVi~G~~-----g~~~~s~D~~Aa~lA~~l  738 (1012)
                      ..+   +...|..+|+++.  .++..++.......+. ..+..+|+.|.|||++.+.     +....++|++|+++|.++
T Consensus        77 ~~l~~~~~~~l~~~Gi~~aqillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l  156 (363)
T TIGR01027        77 VRLMQLYEQLFSQYGIKVAQILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILV  156 (363)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHc
Confidence            443   4456999999973  3344444433333443 6778889999999998421     122346999999999999


Q ss_pred             CCceEEeeeccccccccCCcCCcCcccccccCHH--HHH--h--------hhcCcccHHHHHHHHhCCCcEEEEecCCch
Q psy3752         739 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD--EVI--S--------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG  806 (1012)
Q Consensus       739 ~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~--e~~--~--------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~  806 (1012)
                      +||.|+|+|||||||++||+.+|+|++|++++..  +..  .        +|+|.+|+.|+..|.+.|++++|+|+..|+
T Consensus       157 ~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~  236 (363)
T TIGR01027       157 GADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPE  236 (363)
T ss_pred             CCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            9999999999999999999999999999999753  221  1        578999999999999999999999999999


Q ss_pred             hHHHHhcCCCcceEEEEe
Q psy3752         807 ALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       807 ~i~~~l~Ge~~GT~I~~~  824 (1012)
                      ++.+++.|+.+||+|.+.
T Consensus       237 ~l~~~l~g~~~GT~i~~~  254 (363)
T TIGR01027       237 KIADALEGAPVGTLFHAQ  254 (363)
T ss_pred             HHHHHhcCCCCcEEEeeC
Confidence            999999999999999875

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

Probab=99.94  E-value=3e-26  Score=249.13  Aligned_cols=208  Identities=23%  Similarity=0.299  Sum_probs=174.4

Q ss_pred             chhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc---------cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy3752         613 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---------QNIDRSTADYMGMLATIINSLALFDILNKSGII  683 (1012)
Q Consensus       613 ~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~  683 (1012)
                      .+.+++++++|+.+.+.|+++|||||||..........         ...+....+.....+.+.++.+++.+|.++|++
T Consensus        12 ~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~   91 (248)
T cd02115          12 EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIK   91 (248)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            36799999999999888999999999974443322211         123344455666666667888999999999999


Q ss_pred             eeEeehhchhh---------hhhhcchHHHHHHhhCCCEEEEcCcCCC--------CCCccHHHHHHHHHhcCCceEEee
Q psy3752         684 SHVMSAISIEK---------FLESYIPLNAIKYLEEGKVVIFAGGIGN--------PFFTTDTTAALRAAEIKAEIILKA  746 (1012)
Q Consensus       684 a~~l~~~~~~~---------~~~~~~~~~l~~~L~~g~VPVi~G~~g~--------~~~s~D~~Aa~lA~~l~Ad~liil  746 (1012)
                      +..+++.+...         ....++.+.+..+|+.|.|||++|+.+.        .+.++|++|+.+|.+|+||+|+++
T Consensus        92 a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~  171 (248)
T cd02115          92 AVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVIL  171 (248)
T ss_pred             eEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEE
Confidence            99998876522         3455678899999999999999996543        346699999999999999999999


Q ss_pred             eccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEE
Q psy3752         747 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV  821 (1012)
Q Consensus       747 TDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I  821 (1012)
                      |||||||++||+.+|++++|++++++|+.+   .|+|+.|+.++..+.++|++++|+|+..|+.+ +++.++..||+|
T Consensus       172 tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I  248 (248)
T cd02115         172 TDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI  248 (248)
T ss_pred             ecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence            999999999999999999999999977765   78999999999999999999999999999999 999998899986

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

Probab=99.94  E-value=3.8e-26  Score=245.79  Aligned_cols=201  Identities=23%  Similarity=0.305  Sum_probs=159.5

Q ss_pred             cchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccc----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Q psy3752         612 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI----QNIDRSTADYMGMLATIINSLALFDILNKSGIISHV  686 (1012)
Q Consensus       612 d~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~  686 (1012)
                      +.+.+++++++|+.+.+.|+++|||||| |.....+....    ...+...++.+.......+..+++..|..+|+++++
T Consensus        13 ~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~   92 (239)
T cd04261          13 SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAIS   92 (239)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            5678999999999999999999999998 42222222111    111233334433333344666788899999999999


Q ss_pred             eehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCC------CC---ccHHHHHHHHHhcCCceEEeeec
Q psy3752         687 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FF---TTDTTAALRAAEIKAEIILKATK  748 (1012)
Q Consensus       687 l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~------~~---s~D~~Aa~lA~~l~Ad~liilTD  748 (1012)
                      +++.+....         +...+.+.+..++++|.|||++|+.|.+      ++   ++|++|+.+|.+++||.|+++||
T Consensus        93 l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~td  172 (239)
T cd04261          93 LTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTD  172 (239)
T ss_pred             echhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeC
Confidence            998875221         2234668899999999999999975532      12   59999999999999999999999


Q ss_pred             cccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         749 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       749 VdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      |||||++||+.+|++++|++++++|+.+   .|.+++|+.|+.+|.++|+|++|.|+++|         + .||+|+
T Consensus       173 V~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~---------~-~gt~i~  239 (239)
T cd04261         173 VDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSE---------E-PGTLIT  239 (239)
T ss_pred             CCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCC---------C-CCcEeC
Confidence            9999999999999999999999988876   79999999999999999999999999987         3 699984

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

Probab=99.94  E-value=3.8e-26  Score=245.94  Aligned_cols=201  Identities=25%  Similarity=0.333  Sum_probs=161.1

Q ss_pred             cchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccc---c-CCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeE
Q psy3752         612 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI---Q-NIDRSTADYMGMLATIINSLALFDILNKSGIISHV  686 (1012)
Q Consensus       612 d~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~  686 (1012)
                      +.+.+++++++|+.+.+.|+++|||||| |.....+....   . ..+...++.+.++.+..++.+++..|.++|+++++
T Consensus        13 ~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~   92 (239)
T cd04246          13 DIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAIS   92 (239)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEE
Confidence            5678999999999999899999999996 43332222211   1 11344455544444455777889999999999999


Q ss_pred             eehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCC---CC---C---ccHHHHHHHHHhcCCceEEeeec
Q psy3752         687 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F---TTDTTAALRAAEIKAEIILKATK  748 (1012)
Q Consensus       687 l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~---~~---~---s~D~~Aa~lA~~l~Ad~liilTD  748 (1012)
                      +++.+....         +...+.+.+..++++|.|||++|+.|.   +.   +   ++|++|+.+|.+++||+|+++||
T Consensus        93 l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~td  172 (239)
T cd04246          93 LTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTD  172 (239)
T ss_pred             eccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEEC
Confidence            988875211         233467889999999999999997542   11   2   48999999999999999999999


Q ss_pred             cccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         749 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       749 VdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      ||||||+||+.+|++++|++++++|+.+   .|++++|+.|+++|.++|+|++|.|+++|         + .||+|+
T Consensus       173 V~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~---------~-~gt~i~  239 (239)
T cd04246         173 VDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSE---------N-PGTLIT  239 (239)
T ss_pred             CCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCC---------C-CCcEeC
Confidence            9999999999999999999999988876   78999999999999999999999999986         3 699984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati

>COG1608 Predicted archaeal kinase [General function prediction only]

Probab=99.94  E-value=1.3e-26  Score=235.02  Aligned_cols=225  Identities=21%  Similarity=0.232  Sum_probs=172.5

Q ss_pred             HHHHHhhhhhhhcC-CCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCC------CcchHHHHHHHH
Q psy3752         593 VLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI------DRSTADYMGMLA  665 (1012)
Q Consensus       593 v~K~~~~g~~~~~~-~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~------~~~~~~~~~~~~  665 (1012)
                      ++|+  +|+.++.+ .+..++++.++++|.+|+.  ..-.++|||||||++.+...... ++      .....-.....+
T Consensus         4 IlKl--GGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~-~~~~~~~~~s~~G~~~~~~a   78 (252)
T COG1608           4 ILKL--GGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEF-GLEGLKNYLSPLGFSLTHLA   78 (252)
T ss_pred             EEEe--cceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHh-CccccccccCccchHHHHHH
Confidence            5664  55544443 5778899999999999985  21236899999997766544332 22      011111222223


Q ss_pred             HHHHHHHHHHHHHhcCCceeEeehhchh---hhhhhcchHHHHHHhhCCCEEEEcC------cCCCCCCccHHHHHHHHH
Q psy3752         666 TIINSLALFDILNKSGIISHVMSAISIE---KFLESYIPLNAIKYLEEGKVVIFAG------GIGNPFFTTDTTAALRAA  736 (1012)
Q Consensus       666 ~~~~~~~l~~~l~~~gi~a~~l~~~~~~---~~~~~~~~~~l~~~L~~g~VPVi~G------~~g~~~~s~D~~Aa~lA~  736 (1012)
                      +..-+..++..|.++|+.++...|.++.   .....-..+.+.++++.|+|||++|      ..|...+|+|.++.+||.
T Consensus        79 m~~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~  158 (252)
T COG1608          79 MLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAK  158 (252)
T ss_pred             HHHHHHHHHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHH
Confidence            3334566778899999999876676652   1122223678899999999999999      235567899999999999


Q ss_pred             hcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCCcEEEEecCCchhHH
Q psy3752         737 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK  809 (1012)
Q Consensus       737 ~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~  809 (1012)
                      .+++|+++|+|||||||+.||...|+++.++++.......       +|||..|+.++....+++.+++++||.+|++|.
T Consensus       159 ~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~  238 (252)
T COG1608         159 ELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIY  238 (252)
T ss_pred             HhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHH
Confidence            9999999999999999999999999999999887743332       899999999998888999999999999999999


Q ss_pred             HHhcCCCcceEEE
Q psy3752         810 RVIEGKNEGTLVY  822 (1012)
Q Consensus       810 ~~l~Ge~~GT~I~  822 (1012)
                      ++|+|+.+||+|.
T Consensus       239 ~~l~G~~vGT~I~  251 (252)
T COG1608         239 RALRGENVGTRID  251 (252)
T ss_pred             HHhcCCCCceEec
Confidence            9999999999985

>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

Probab=99.93  E-value=2.6e-26  Score=249.49  Aligned_cols=220  Identities=19%  Similarity=0.221  Sum_probs=172.6

Q ss_pred             HHHHHHhhhhhhhcC--CCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCC-------CcchHHHHH
Q psy3752         592 AVLKAQQLGEALMKG--DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI-------DRSTADYMG  662 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~--~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~-------~~~~~~~~~  662 (1012)
                      +|+|   .|++++++  .+..++.+.++++++++++++  |+++|||||||++.+...... ++       ++..+....
T Consensus         2 iVIK---iGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~-g~~~g~~~~~~~~l~~~~   75 (252)
T cd04241           2 IILK---LGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEY-GLPDGDGSFSAEGVAETH   75 (252)
T ss_pred             EEEE---EeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHh-CCCcCCCchhhhhHHHHH
Confidence            3567   45555543  356789999999999999887  999999999986655333221 22       223333444


Q ss_pred             HHHHHHHHHHHHHHHHhcCCceeEeehhchhh----hhhhcchHHHHHHhhCCCEEEEcCcCC------CCCCccHHHHH
Q psy3752         663 MLATIINSLALFDILNKSGIISHVMSAISIEK----FLESYIPLNAIKYLEEGKVVIFAGGIG------NPFFTTDTTAA  732 (1012)
Q Consensus       663 ~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~----~~~~~~~~~l~~~L~~g~VPVi~G~~g------~~~~s~D~~Aa  732 (1012)
                      .... ..+..+.++|..+|+++.++++.++..    .+..++.+.+.++|+.|.|||++|..+      ..++++|++|+
T Consensus        76 ~~~~-~ln~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~  154 (252)
T cd04241          76 EAML-ELNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVV  154 (252)
T ss_pred             HHHH-HHHHHHHHHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHH
Confidence            3332 344567888999999999999887522    245678899999999999999987321      23457999999


Q ss_pred             HHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh------------hhcCcccHHHHHHHHhCCCcEEEE
Q psy3752         733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS------------KKLEIMDSTAFSFCRDQKLPIRVF  800 (1012)
Q Consensus       733 ~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~------------~G~~v~~~~aa~~a~~~gi~v~I~  800 (1012)
                      .+|.+++||+|+++|||||||++||   |++++|++++++++.+            +|+|..|+.++..+.++|++++|+
T Consensus       155 ~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~  231 (252)
T cd04241         155 ELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIF  231 (252)
T ss_pred             HHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEE
Confidence            9999999999999999999999999   8899999998744321            588999999999999999999999


Q ss_pred             ecCCchhHHHHhcCCCcceEE
Q psy3752         801 SIIKSGALKRVIEGKNEGTLV  821 (1012)
Q Consensus       801 ~g~~~~~i~~~l~Ge~~GT~I  821 (1012)
                      +|..|+++.+++.|+.+||+|
T Consensus       232 ~g~~~~~l~~~l~g~~~GT~i  252 (252)
T cd04241         232 NGDKPENLYRALLGNFIGTRI  252 (252)
T ss_pred             eCCCHHHHHHHHcCCCCceEC
Confidence            999999999999999999986

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

Probab=99.93  E-value=2.6e-25  Score=239.74  Aligned_cols=212  Identities=21%  Similarity=0.294  Sum_probs=167.3

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhc--ccccCCCcchHHHHHHHHHHHH
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRSTADYMGMLATIIN  669 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  669 (1012)
                      +|+|   .|+++++++.    .+.+.++|++|+++.+ |++++||||||+.++.+.  ....+++....+..++.+++++
T Consensus        33 ~ViK---iGGSvitdk~----~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln  104 (262)
T cd04255          33 NVVK---IGGQSIIDRG----AEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQN  104 (262)
T ss_pred             EEEE---eccceecCCc----HHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            5788   5666665543    4689999999999876 789999999998886544  2234566667788888888888


Q ss_pred             HHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCC------------CCCCccHHHHHHHHHh
Q psy3752         670 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------------NPFFTTDTTAALRAAE  737 (1012)
Q Consensus       670 ~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g------------~~~~s~D~~Aa~lA~~  737 (1012)
                      ..++...|..+|++++.  .         .+...+..+|+.|.|||++|+.+            .++.++|++|+++|.+
T Consensus       105 ~lv~~~~l~~~g~~~i~--~---------~~~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~  173 (262)
T cd04255         105 AEMLATLLAKHGGSKVG--H---------GDLLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEV  173 (262)
T ss_pred             HHHHHHHHHHcCCCccc--c---------ccHHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHH
Confidence            77776778888887631  1         22346888999999999999742            4677899999999999


Q ss_pred             cCCceEEeeeccccccccCCcCCcCcccccccCHHHHHhh--hcCcccHHHHHHHH--hCCCcEEEEecCCchhHHHHhc
Q psy3752         738 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK--KLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIE  813 (1012)
Q Consensus       738 l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~~--G~~v~~~~aa~~a~--~~gi~v~I~~g~~~~~i~~~l~  813 (1012)
                      ++||.|+++|||||||++||+.+|++++|+++++.++.+.  +..+++-.+...+.  +..++++|+||..|+++.+++.
T Consensus       174 l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~  253 (262)
T cd04255         174 IGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALR  253 (262)
T ss_pred             hCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHc
Confidence            9999999999999999999999999999999999877652  22223434444443  3336999999999999999999


Q ss_pred             CCCcceEEE
Q psy3752         814 GKNEGTLVY  822 (1012)
Q Consensus       814 Ge~~GT~I~  822 (1012)
                      |+.+||+|.
T Consensus       254 g~~~GT~i~  262 (262)
T cd04255         254 GEHVGTIIR  262 (262)
T ss_pred             CCCCceEeC
Confidence            999999983

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>KOG1154|consensus

Probab=99.93  E-value=9.3e-26  Score=225.16  Aligned_cols=232  Identities=19%  Similarity=0.205  Sum_probs=174.6

Q ss_pred             HHHHHHHHHhhhhhhhcC-CCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc-hHhhhh---ccccc-----CC-Ccch
Q psy3752         589 YSLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NICRGI---SNKIQ-----NI-DRST  657 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~-~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG-~~~~~~---~~~~~-----~~-~~~~  657 (1012)
                      ..++|+|   .|++++++ +...+...++..|++++++|++.|++++||+||| .+.++.   .....     .+ +...
T Consensus         9 a~rIVVK---LGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~   85 (285)
T KOG1154|consen    9 AYRIVVK---LGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSE   85 (285)
T ss_pred             ceEEEEE---ecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCccc
Confidence            3468899   67777765 4455889999999999999999999999999996 222221   11110     01 2223


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHhcCCce--eEeehhchhhhhhhcc-hHHHHHHhhCCCEEEEcCcCC-----CCCC-
Q psy3752         658 ADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIG-----NPFF-  725 (1012)
Q Consensus       658 ~~~~~~~~~~~~~~~l~~~---l~~~gi~a--~~l~~~~~~~~~~~~~-~~~l~~~L~~g~VPVi~G~~g-----~~~~-  725 (1012)
                      .....+.++.+++.+|+-|   |..+|+..  +.++-.|+..--...| ...+.++|..|.|||+.....     .++- 
T Consensus        86 l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D  165 (285)
T KOG1154|consen   86 LAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGD  165 (285)
T ss_pred             hhhHHHHHHhCcchHHHHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCC
Confidence            4555566666777777776   88998876  6667667644333333 357888999999999965221     1111 


Q ss_pred             --ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHH-h----------hhcCcccHHHHHHHHh
Q psy3752         726 --TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFCRD  792 (1012)
Q Consensus       726 --s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~-~----------~G~~v~~~~aa~~a~~  792 (1012)
                        .||++||.+|..++||+||++|||||+||.+|.. ..+++|+..+..+-. .          +|||-.|+.||..|..
T Consensus       166 ~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~  244 (285)
T KOG1154|consen  166 SSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALN  244 (285)
T ss_pred             CCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhc
Confidence              1999999999999999999999999999977653 456778776654332 1          7999999999999999


Q ss_pred             CCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         793 QKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       793 ~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      .|++|+|+||..|++|.+++.|..+||.|...
T Consensus       245 ~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~  276 (285)
T KOG1154|consen  245 AGVSVIITNGDAPENITDIVEGKKVGTFFEQL  276 (285)
T ss_pred             CCceEEEeCCCChHHHHHHHhhhhhhhhhhhc
Confidence            99999999999999999999999999998643

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=99.92  E-value=2.3e-24  Score=247.42  Aligned_cols=332  Identities=17%  Similarity=0.200  Sum_probs=232.5

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccc-----------------
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKI-----------------  650 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~-----------------  650 (1012)
                      +|.|+  +|+|       .-+.+.+.++++.|.+..+.|.++|+|+|++    +.+..+....                 
T Consensus         4 iV~KF--GGTS-------va~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~   74 (447)
T COG0527           4 IVQKF--GGTS-------VADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIAS   74 (447)
T ss_pred             EEEEe--CCcc-------cCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHH
Confidence            46676  5554       3567889999999999888899999999983    3333222210                 


Q ss_pred             -cCCCc--------------------------chHHHHHHHHHHH--HHHHHHHHHHhcCCceeEeehhchhhh------
Q psy3752         651 -QNIDR--------------------------STADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF------  695 (1012)
Q Consensus       651 -~~~~~--------------------------~~~~~~~~~~~~~--~~~~l~~~l~~~gi~a~~l~~~~~~~~------  695 (1012)
                       ...++                          .+.....+++.|+  ++.+|+.+|+..|+++..+++++....      
T Consensus        75 el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~  154 (447)
T COG0527          75 ELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHG  154 (447)
T ss_pred             HHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCccc
Confidence             00111                          3455666666665  688899999999999999999876322      


Q ss_pred             ---hhhcchHH-HHHHhhCCCEEEEcCcCCCCC---Cc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcC
Q psy3752         696 ---LESYIPLN-AIKYLEEGKVVIFAGGIGNPF---FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLS  762 (1012)
Q Consensus       696 ---~~~~~~~~-l~~~L~~g~VPVi~G~~g~~~---~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~  762 (1012)
                         +....... +..+++.|.|||++||+|...   .+      +|++|+.||..|+||++.||||||||||+|||..|+
T Consensus       155 ~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~  234 (447)
T COG0527         155 NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPD  234 (447)
T ss_pred             ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCc
Confidence               22334445 788899999999999998532   22      999999999999999999999999999999999999


Q ss_pred             cccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEee---ehhh------h
Q psy3752         763 AIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY---IMII------S  830 (1012)
Q Consensus       763 a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~---~~~~------~  830 (1012)
                      |++|++++|+|+.+   .|+++.|++|+++|.+++||++|.|.++|+         ..||+|.+..   ...+      +
T Consensus       235 Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~~~~~v~gIa~~~  305 (447)
T COG0527         235 ARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPD---------APGTLITAETESDEPVVKGIALDD  305 (447)
T ss_pred             ceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCC---------CCceEEecCCcCCCCceEEEEeCC
Confidence            99999999999988   899999999999999999999999999873         4799999762   1111      1


Q ss_pred             h--hhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccc------cceEEEecCcccc-------------------ccceee
Q psy3752         831 D--IKKNTKQKMLNTIKILKENLKKVRTGRANIGML------DNIQVKYHEHLTK-------------------LLKIAN  883 (1012)
Q Consensus       831 ~--i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l------~~i~V~~~g~~~~-------------------l~~~a~  883 (1012)
                      +  .+.-....|......+.+-|.-+.-...++.++      +++...+.+...+                   -.++|-
T Consensus       306 ~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~  385 (447)
T COG0527         306 NVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLAL  385 (447)
T ss_pred             CeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeE
Confidence            1  111123445555556666677777777887776      2333333333211                   124444


Q ss_pred             EeecCCceEEEeecCcccHHHHHHHHHhcCCCCCcccC-CCeEEEeCCCCCHHHHHHHHHHHHHHH
Q psy3752         884 ITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQ-GNIIYVSIPPLTKERREEIVKLIKNIT  948 (1012)
Q Consensus       884 i~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~p~~~-~~~i~v~iP~~t~E~R~~l~k~~k~~~  948 (1012)
                      |++-+..+-    -.+.....+.+|+.+.+.|+--... .-.|.+-|+   ++..++.++.+.+.+
T Consensus       386 vsiVG~gm~----~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~---~~~~~~av~~LH~~~  444 (447)
T COG0527         386 VSIVGAGMR----SNPGVAARIFQALAEENINIIMISSSEISISFVVD---EKDAEKAVRALHEAF  444 (447)
T ss_pred             EEEEccccc----cCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEc---cHHHHHHHHHHHHHH
Confidence            444443321    1356788888999888887765553 346666664   455555566555544

>PRK08841 aspartate kinase; Validated

Probab=99.92  E-value=1.3e-24  Score=247.86  Aligned_cols=215  Identities=22%  Similarity=0.273  Sum_probs=167.8

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccccCC-CcchHHHHHHHH
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNI-DRSTADYMGMLA  665 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~~~-~~~~~~~~~~~~  665 (1012)
                      ++|+|+  +|++       .-+.+.+++++++|+.+.+.|+++|+|||||    +.+.+........ ++.+.+.....+
T Consensus         3 ~~V~Kf--GGts-------v~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~G   73 (392)
T PRK08841          3 LIVQKF--GGTS-------VGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAG   73 (392)
T ss_pred             eEEEeE--Cccc-------CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHH
Confidence            346676  4444       3567889999999999999999999999984    4443322221111 222333333333


Q ss_pred             HHHHHHHHHHHHHhcCCceeEeehhchhh---------hhhhcchHHHHHHhhCCCEEEEcCcCCC---CCC------cc
Q psy3752         666 TIINSLALFDILNKSGIISHVMSAISIEK---------FLESYIPLNAIKYLEEGKVVIFAGGIGN---PFF------TT  727 (1012)
Q Consensus       666 ~~~~~~~l~~~l~~~gi~a~~l~~~~~~~---------~~~~~~~~~l~~~L~~g~VPVi~G~~g~---~~~------s~  727 (1012)
                      ......+++.+|++.|+++.++++.+...         .+..++.+.+..+++.|.|||++||.|.   +..      .+
T Consensus        74 E~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggs  153 (392)
T PRK08841         74 EQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGS  153 (392)
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCCh
Confidence            33467778888999999999999987521         1233456788899999999999998762   222      38


Q ss_pred             HHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCC
Q psy3752         728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIK  804 (1012)
Q Consensus       728 D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~  804 (1012)
                      |++|+.+|..|+||.|++||||||||++||+.+|+|++|++++++|+.+   .|++++|+.|+++|.++|+|++|.|+++
T Consensus       154 D~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~  233 (392)
T PRK08841        154 DTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFE  233 (392)
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCC
Confidence            9999999999999999999999999999999999999999999998776   7999999999999999999999999986


Q ss_pred             chhHHHHhcCCCcceEEEEe
Q psy3752         805 SGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       805 ~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      +          ..||+|...
T Consensus       234 ~----------~~GT~I~~~  243 (392)
T PRK08841        234 V----------GEGTLIKGE  243 (392)
T ss_pred             C----------CCCeEEEec
Confidence            4          249999643

>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

Probab=99.92  E-value=8.7e-25  Score=233.10  Aligned_cols=190  Identities=24%  Similarity=0.276  Sum_probs=155.2

Q ss_pred             cchhhHhHHHHHHHHHhCCCeEEEEEccchH-hhhhcccccCCCcchHHHHHHHHHH--HHHHHHHHHHHhcCCceeEee
Q psy3752         612 NSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATI--INSLALFDILNKSGIISHVMS  688 (1012)
Q Consensus       612 d~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~a~~l~  688 (1012)
                      +++.+++++++|+.+ +.|+++|||||||.. ...+....           .+++.|  .+..+++.+|.++|+++..++
T Consensus        13 ~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~-----------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~   80 (227)
T cd04234          13 SAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA-----------LLLSFGERLSARLLAAALRDRGIKARSLD   80 (227)
T ss_pred             CHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence            456899999999999 889999999998522 22111111           333344  356778888999999999999


Q ss_pred             hhchhh---------hhhhcchHHHHHHhhC-CCEEEEcCcCCC---CCC------ccHHHHHHHHHhcCCceEEeeecc
Q psy3752         689 AISIEK---------FLESYIPLNAIKYLEE-GKVVIFAGGIGN---PFF------TTDTTAALRAAEIKAEIILKATKV  749 (1012)
Q Consensus       689 ~~~~~~---------~~~~~~~~~l~~~L~~-g~VPVi~G~~g~---~~~------s~D~~Aa~lA~~l~Ad~liilTDV  749 (1012)
                      +.++..         .....+.+.+..+++. |.|||++|+.|.   +..      ++|++|+.+|.+|+||+|+++|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV  160 (227)
T cd04234          81 ARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDV  160 (227)
T ss_pred             HHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECC
Confidence            887532         1344567889999999 999999997652   222      389999999999999999999999


Q ss_pred             ccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         750 DGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       750 dGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      |||||+||+.+|++++|++++++|+.+   .|++++++.|+++|.++|++++|.|+.+|+         ..||+|+
T Consensus       161 ~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~  227 (227)
T cd04234         161 DGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT  227 (227)
T ss_pred             CccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence            999999999999999999999998876   688999999999999999999999999874         3599984

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=99.92  E-value=6.6e-25  Score=238.59  Aligned_cols=223  Identities=22%  Similarity=0.248  Sum_probs=167.6

Q ss_pred             HHHHHHhhhhhhhcCC---CCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccccCCCcchHHHHHHH
Q psy3752         592 AVLKAQQLGEALMKGD---AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGML  664 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~---~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~  664 (1012)
                      +|+++  +|.++...+   ....+...++..|++|+.+.+.|++++||||+|    +.+++........++.+++.+...
T Consensus         2 ivial--gGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~   79 (308)
T cd04235           2 IVVAL--GGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAM   79 (308)
T ss_pred             EEEEe--cHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcch
Confidence            45666  788887654   356788999999999999999999999999997    777765544222334455555555


Q ss_pred             HHHHHHHHHH----HHHHhcCCceeEeehhchhhh---------------------------------------------
Q psy3752         665 ATIINSLALF----DILNKSGIISHVMSAISIEKF---------------------------------------------  695 (1012)
Q Consensus       665 ~~~~~~~~l~----~~l~~~gi~a~~l~~~~~~~~---------------------------------------------  695 (1012)
                      .+|+.+++|+    ..|...|++....+......+                                             
T Consensus        80 ~~G~ig~~~~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv  159 (308)
T cd04235          80 SQGMIGYMLQQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV  159 (308)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence            5555555544    447887876644443221000                                             


Q ss_pred             ------hhhcchHHHHHHhhCCCEEEEcCcCCCCCCc-------------cHHHHHHHHHhcCCceEEeeeccccccccC
Q psy3752         696 ------LESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIYNSD  756 (1012)
Q Consensus       696 ------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s-------------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~d  756 (1012)
                            .+-++.+.+..+|++|+|||++|+.|+|.++             +|++|+++|..++||.|+++|||||||+++
T Consensus       160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~  239 (308)
T cd04235         160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF  239 (308)
T ss_pred             eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence                  1123457788899999999999988877643             499999999999999999999999999976


Q ss_pred             CcCCcCcccccccCHHHHHh--------hhcCcccHHHHH-HHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         757 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFS-FCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       757 P~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~-~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      |  .|++++|++++++++.+        .|+|.+|+.|+. ++.+.+.+++|++   ++++.++|.|+ .||+|.
T Consensus       240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~  308 (308)
T cd04235         240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV  308 (308)
T ss_pred             C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence            5  48999999999988754        588999998774 4555567888876   67799999998 799983

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=99.92  E-value=2.4e-24  Score=228.14  Aligned_cols=167  Identities=42%  Similarity=0.764  Sum_probs=140.5

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH   80 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~   80 (1012)
                      +|||.+.|++..++++|+++||.|+||+|++||.+|+||.||++||+++||+..|+|.++.+|+++++|+.++...+...
T Consensus        34 l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~  113 (211)
T PRK09481         34 VSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVARGESRLMMHRIEKDWYSL  113 (211)
T ss_pred             CCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999998888999999999999999999999999999999999999988899999999999999977665544322


Q ss_pred             HHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccccc-CCCchhHHHHHH
Q psy3752          81 LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLS-KSASPLIKYAER  159 (1012)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~-~~~P~L~aw~~r  159 (1012)
                      .... ...   .....+.....+.+.|..+|++|++++||+|+++|+||+++++++.++...+.++. +.||+|.+|+++
T Consensus       114 ~~~~-~~~---~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~  189 (211)
T PRK09481        114 MNKI-VNG---SASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRLPVLGIELSGPGAKELKGYMTR  189 (211)
T ss_pred             HHHH-hcC---CHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHH
Confidence            2111 111   12233556677888999999999999999999999999999999988876676654 568999999999


Q ss_pred             HhcCCccccccc
Q psy3752         160 IFSRPSYMESLT  171 (1012)
Q Consensus       160 i~~rp~~~~~lt  171 (1012)
                      +.+||+|++++.
T Consensus       190 ~~~rp~~~~~~~  201 (211)
T PRK09481        190 VFERDSFLASLT  201 (211)
T ss_pred             HhccHHHHHHcC
Confidence            999999998876

>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

Probab=99.92  E-value=1.9e-24  Score=232.90  Aligned_cols=202  Identities=23%  Similarity=0.331  Sum_probs=156.9

Q ss_pred             ccchhhHhHHHHHHHHHhCCCeEEEEEcc-----chH----hhhhccc-ccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q psy3752         611 INSSIIKNIISEISEIVSCGIELAIVIGG-----GNI----CRGISNK-IQNIDRSTADYMGMLATIINSLALFDILNKS  680 (1012)
Q Consensus       611 id~~~i~~ia~~I~~l~~~G~~vvIVhGG-----G~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  680 (1012)
                      -+++.+++++++|+.+.+.|+++||||||     |..    ..+.... ....++..++.+........+..++++|+++
T Consensus        12 ~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~   91 (244)
T cd04260          12 STKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIISAVVLTSTLRAQ   91 (244)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence            35667899999999999999988888753     211    1111111 1123333444443333334566789999999


Q ss_pred             CCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCC---CC---C---ccHHHHHHHHHhcCCce
Q psy3752         681 GIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F---TTDTTAALRAAEIKAEI  742 (1012)
Q Consensus       681 gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~---~~---~---s~D~~Aa~lA~~l~Ad~  742 (1012)
                      |++++.+++.+...+         +..++.+.+..+++.|.|||++|+.|.   +.   +   ++|++|+.+|.+|+|++
T Consensus        92 Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~  171 (244)
T cd04260          92 GLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEY  171 (244)
T ss_pred             CCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCE
Confidence            999999988765221         234577889999999999999997442   22   2   38999999999999999


Q ss_pred             EEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcce
Q psy3752         743 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT  819 (1012)
Q Consensus       743 liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT  819 (1012)
                      |+++|||||||++||+.+|++++|++++++|+.+   .|.+++|+.|+++|.++|++++|.|+++|         + .||
T Consensus       172 l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~---------~-~gt  241 (244)
T cd04260         172 VEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSE---------N-PGT  241 (244)
T ss_pred             EEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCC---------C-CCC
Confidence            9999999999999999999999999999988876   78899999999999999999999999876         3 599


Q ss_pred             EEE
Q psy3752         820 LVY  822 (1012)
Q Consensus       820 ~I~  822 (1012)
                      +|+
T Consensus       242 ~i~  244 (244)
T cd04260         242 LIT  244 (244)
T ss_pred             EeC
Confidence            984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet

>TIGR00746 arcC carbamate kinase

Probab=99.92  E-value=2.4e-24  Score=235.97  Aligned_cols=224  Identities=21%  Similarity=0.242  Sum_probs=169.5

Q ss_pred             HHHHHHHhhhhhhhcCC-CC--cccchhhHhHHHHHHHHHhCCCeEEEEEccchHh----hhhcccccCCCcchHHHHHH
Q psy3752         591 LAVLKAQQLGEALMKGD-AY--NINSSIIKNIISEISEIVSCGIELAIVIGGGNIC----RGISNKIQNIDRSTADYMGM  663 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~-~~--~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~----~~~~~~~~~~~~~~~~~~~~  663 (1012)
                      ++|+|+  +|++++..+ ..  .++...++.+|++|+.|.+.|+++|||||||...    ++........++.+++.+..
T Consensus         2 riVikl--GgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A   79 (310)
T TIGR00746         2 RVVVAL--GGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGA   79 (310)
T ss_pred             eEEEEE--CHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHH
Confidence            467786  777777432 22  4668899999999999999999999999997443    32222222244556788999


Q ss_pred             HHHHHHHHHHHHHHH----hcCCce--------eEeehhc--hhhh----------------------------------
Q psy3752         664 LATIINSLALFDILN----KSGIIS--------HVMSAIS--IEKF----------------------------------  695 (1012)
Q Consensus       664 ~~~~~~~~~l~~~l~----~~gi~a--------~~l~~~~--~~~~----------------------------------  695 (1012)
                      ..+++.+++++.+|.    .+|+..        +.++..|  +...                                  
T Consensus        80 ~~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rr  159 (310)
T TIGR00746        80 MSQGMIGYMLQQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRR  159 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceE
Confidence            999988888877766    777443        3334333  2100                                  


Q ss_pred             -------hhhcchHHHHHHhhCCCEEEEcCcCCCCC-------------CccHHHHHHHHHhcCCceEEeeecccccccc
Q psy3752         696 -------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYNS  755 (1012)
Q Consensus       696 -------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~-------------~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~  755 (1012)
                             .+.++.+.+..+|++|.++|.+|+.|.|.             +++|++|+++|.+++||+|+++|||||||++
T Consensus       160 vv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~  239 (310)
T TIGR00746       160 VVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN  239 (310)
T ss_pred             eecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC
Confidence                   11245678899999999777666666554             2699999999999999999999999999997


Q ss_pred             CCcCCcCcccccccCHHHHHh--------hhcCcccHHHH-HHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         756 DPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       756 dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      ++  +|++++|++++.+++..        .|+|.+|+.|| +.+.+++.+++|++   ++++.++|.|+ .||+|.
T Consensus       240 ~~--~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~  309 (310)
T TIGR00746       240 YG--KPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT  309 (310)
T ss_pred             CC--CCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence            53  58899999999887755        48999999888 66666678999987   67899999999 899986

The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.

>PRK06635 aspartate kinase; Reviewed

Probab=99.91  E-value=1.8e-23  Score=243.02  Aligned_cols=278  Identities=23%  Similarity=0.296  Sum_probs=203.0

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc-hHh---hhhcccccCC-CcchHHHHHHHH
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NIC---RGISNKIQNI-DRSTADYMGMLA  665 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG-~~~---~~~~~~~~~~-~~~~~~~~~~~~  665 (1012)
                      ++|+|+  +|+++       -+.+.+++++++|+.+.+.|+++||||||| ...   .......... +....+.+...+
T Consensus         3 ~iViK~--GGs~l-------~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~G   73 (404)
T PRK06635          3 LIVQKF--GGTSV-------GDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTG   73 (404)
T ss_pred             eEEEeE--CCccc-------CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhh
Confidence            457785  44443       356789999999999998999999999974 222   2222111111 333444444444


Q ss_pred             HHHHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCC---C---C---cc
Q psy3752         666 TIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TT  727 (1012)
Q Consensus       666 ~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~---~---~---s~  727 (1012)
                      ...++.+++.+|+.+|++++++++.++...         +...+.+.+..+++.|.|||++|+.|.+   .   +   ++
T Consensus        74 e~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~s  153 (404)
T PRK06635         74 EQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGS  153 (404)
T ss_pred             HHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCCh
Confidence            445777899999999999999998876321         2345678899999999999999976532   1   2   48


Q ss_pred             HHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCC
Q psy3752         728 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIK  804 (1012)
Q Consensus       728 D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~  804 (1012)
                      |++|+++|..++||.|++||||||||++||+.+|++++|++++++|+.+   .|++++++.|+.++.++|++++|.|+++
T Consensus       154 D~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~  233 (404)
T PRK06635        154 DTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS  233 (404)
T ss_pred             HHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCC
Confidence            9999999999999999999999999999999999999999999998877   7999999999999999999999999886


Q ss_pred             chhHHHHhcCCCcceEEEEeeehhhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeE
Q psy3752         805 SGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANI  884 (1012)
Q Consensus       805 ~~~i~~~l~Ge~~GT~I~~~~~~~~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i  884 (1012)
                      +          ..||+|......           .|                   ....+..|.        -..+++.|
T Consensus       234 ~----------~~gT~i~~~~~~-----------~~-------------------~~~~i~~I~--------~~~~v~~I  265 (404)
T PRK06635        234 D----------NPGTLITGEEEE-----------IM-------------------EQPVVTGIA--------FDKDEAKV  265 (404)
T ss_pred             C----------CCCCEEeeCCcc-----------cc-------------------ccCceEEEE--------ecCCeEEE
Confidence            4          359999764320           00                   001122222        24667888


Q ss_pred             eecCCceEEEeecCcccHHHHHHHHHhcCCCCCcccCC------CeEEEeCCC
Q psy3752         885 TLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQG------NIIYVSIPP  931 (1012)
Q Consensus       885 ~~~~~~~l~i~~~d~~~~~~i~~ai~~s~l~~~p~~~~------~~i~v~iP~  931 (1012)
                      ++.+      -+-.+..+..|-+++.+++.++.-...+      ..+.+.+|.
T Consensus       266 sv~g------~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~  312 (404)
T PRK06635        266 TVVG------VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR  312 (404)
T ss_pred             EECC------CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH
Confidence            8765      1335678889999999888766533222      467777753

>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional

Probab=99.91  E-value=4.1e-24  Score=233.35  Aligned_cols=200  Identities=17%  Similarity=0.212  Sum_probs=161.3

Q ss_pred             hHHHHHHHHHhCCCeEEEEEccchHhhhhcccc---c-------C-----CCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3752         618 NIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q-------N-----IDRSTADYMGMLATIINSLALFDILNKSGI  682 (1012)
Q Consensus       618 ~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~---~-------~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi  682 (1012)
                      .++.+|+.+...|.++|||||||.+........   .       +     .++.+++...++.. ..+..+.++|.++|+
T Consensus        16 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~-~ln~~lv~~L~~~Gv   94 (268)
T PRK14058         16 DALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMA-LINKQLVERLQSLGV   94 (268)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence            568999999899999999999986655433221   1       1     14445555555545 556666779999999


Q ss_pred             ceeEeehhchhhh--------------------------hhhcchHHHHHHhhCCCEEEEcCcC----CC-CCCccHHHH
Q psy3752         683 ISHVMSAISIEKF--------------------------LESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTTA  731 (1012)
Q Consensus       683 ~a~~l~~~~~~~~--------------------------~~~~~~~~l~~~L~~g~VPVi~G~~----g~-~~~s~D~~A  731 (1012)
                      +++++++.+.+.+                          +..++.+.+..++++|.|||++|..    |. .++++|++|
T Consensus        95 ~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A  174 (268)
T PRK14058         95 NAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAA  174 (268)
T ss_pred             CccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHH
Confidence            9999999875221                          3456789999999999999999832    11 135699999


Q ss_pred             HHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-----hhcCcccHHHHHHHHhCCC-cEEEEecCCc
Q psy3752         732 ALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIKS  805 (1012)
Q Consensus       732 a~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-----~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~  805 (1012)
                      +.+|.+++||+|+|+|||||||++||+   ++++|++++.+++.+     +|+|..|+.++..+.++|+ +++|++|..|
T Consensus       175 ~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~  251 (268)
T PRK14058        175 AAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVD  251 (268)
T ss_pred             HHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence            999999999999999999999999984   478999999887655     6999999999999999999 8999999999


Q ss_pred             hhHHHHhcCCCcceEEEE
Q psy3752         806 GALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       806 ~~i~~~l~Ge~~GT~I~~  823 (1012)
                      +++.++|+|+  ||+|.+
T Consensus       252 ~~l~~~l~G~--GT~I~~  267 (268)
T PRK14058        252 DPISAALAGE--GTVIVN  267 (268)
T ss_pred             chHHHHhCCC--ceEEec
Confidence            9999999886  999975

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=99.91  E-value=6e-24  Score=246.78  Aligned_cols=203  Identities=22%  Similarity=0.242  Sum_probs=161.3

Q ss_pred             ccchhhHhHHHHHHHHHhCCCeEEEEEccch-Hhhhhcccc-----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCce
Q psy3752         611 INSSIIKNIISEISEIVSCGIELAIVIGGGN-ICRGISNKI-----QNIDRSTADYMGMLATIINSLALFDILNKSGIIS  684 (1012)
Q Consensus       611 id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a  684 (1012)
                      -+.+.+++++++|+.+.+.|++++||||||. ....+....     ...+....+.+...+...++.+++.+|+++|+++
T Consensus        13 ~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a   92 (401)
T TIGR00656        13 GSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKA   92 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCce
Confidence            3567899999999999889999999999952 111111111     1122333444555444457888999999999999


Q ss_pred             eEeehhchhh---------hhhhcch-HHHHHHhhCCCEEEEcCcCCC--CC-C------ccHHHHHHHHHhcCCceEEe
Q psy3752         685 HVMSAISIEK---------FLESYIP-LNAIKYLEEGKVVIFAGGIGN--PF-F------TTDTTAALRAAEIKAEIILK  745 (1012)
Q Consensus       685 ~~l~~~~~~~---------~~~~~~~-~~l~~~L~~g~VPVi~G~~g~--~~-~------s~D~~Aa~lA~~l~Ad~lii  745 (1012)
                      +.+++.+...         .+...+. +.+..+++.|.|||++|+.|.  .+ .      ++|++|+.+|..|+||.|++
T Consensus        93 ~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i  172 (401)
T TIGR00656        93 IWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDI  172 (401)
T ss_pred             EEeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEE
Confidence            9998776421         1223344 789999999999999997662  12 1      26999999999999999999


Q ss_pred             eeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         746 ATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       746 lTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      ||||||||++||+.+|+++++++++++|+.+   .|++++|++|+.+|.++++|++|.|+++|+          .||+|.
T Consensus       173 ~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~  242 (401)
T TIGR00656       173 YTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLIT  242 (401)
T ss_pred             EECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEE
Confidence            9999999999999999999999999999887   799999999999999999999999999873          489996


Q ss_pred             E
Q psy3752         823 E  823 (1012)
Q Consensus       823 ~  823 (1012)
                      +
T Consensus       243 ~  243 (401)
T TIGR00656       243 N  243 (401)
T ss_pred             e
Confidence            5

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=99.91  E-value=1.9e-23  Score=220.17  Aligned_cols=214  Identities=19%  Similarity=0.192  Sum_probs=177.3

Q ss_pred             CCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchH---hhhhccccc----C---CCcchHHHHHHHHHHHHHHHHHH
Q psy3752         606 GDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI---CRGISNKIQ----N---IDRSTADYMGMLATIINSLALFD  675 (1012)
Q Consensus       606 ~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~---~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~l~~  675 (1012)
                      |+..+.+++...+++++|+.|+..|.++|||||||..   .+.......    +   .++.+++...++..|..+..+++
T Consensus        10 GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iva   89 (265)
T COG0548          10 GGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIVA   89 (265)
T ss_pred             CceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4444567778999999999999999999999999944   333333322    2   27788999999999999999999


Q ss_pred             HHHhcCCceeEeehhchhhh------------------hhhcchHHHHHHhhCCCEEEEcC-c---CCC-CCCccHHHHH
Q psy3752         676 ILNKSGIISHVMSAISIEKF------------------LESYIPLNAIKYLEEGKVVIFAG-G---IGN-PFFTTDTTAA  732 (1012)
Q Consensus       676 ~l~~~gi~a~~l~~~~~~~~------------------~~~~~~~~l~~~L~~g~VPVi~G-~---~g~-~~~s~D~~Aa  732 (1012)
                      .|..+|..++++++.|.+.+                  ++.+|+..+..++++|.|||+++ +   .|. -++++|++|+
T Consensus        90 ~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~  169 (265)
T COG0548          90 RLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAG  169 (265)
T ss_pred             HHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHH
Confidence            99999999999999885221                  56778999999999999999997 2   222 2466999999


Q ss_pred             HHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCC-cEEEEecCC
Q psy3752         733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIK  804 (1012)
Q Consensus       733 ~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~  804 (1012)
                      .+|.+|+|++|+++|||+|||+++|+  +  .+|++++.+++.+       .|+|++++.+|..|.+.|+ +++|+||+.
T Consensus       170 ~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~  245 (265)
T COG0548         170 ALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRV  245 (265)
T ss_pred             HHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCC
Confidence            99999999999999999999998875  3  6788888877655       5899999999999999999 799999999


Q ss_pred             chhHHH-HhcCCCcceEEEE
Q psy3752         805 SGALKR-VIEGKNEGTLVYE  823 (1012)
Q Consensus       805 ~~~i~~-~l~Ge~~GT~I~~  823 (1012)
                      ++.+.. ++.+..+||.|.+
T Consensus       246 ~~~ll~eLFt~~giGT~i~~  265 (265)
T COG0548         246 PHSLLLELFTRDGIGTMIVR  265 (265)
T ss_pred             cchHHHHHhcCCCcceEecC
Confidence            999765 5677789999863

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.90  E-value=1.6e-23  Score=256.62  Aligned_cols=235  Identities=18%  Similarity=0.175  Sum_probs=177.8

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhccccc----C----CCcchHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQ----N----IDRSTAD  659 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~~----~----~~~~~~~  659 (1012)
                      .+++|+|   .|+++++++++.++.+.+.+++++|+.+++.|+++|||+|| |...+.......    +    ..+....
T Consensus         7 ~~~iViK---iGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~   83 (715)
T TIGR01092         7 VKRIVVK---VGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPEL   83 (715)
T ss_pred             CCEEEEE---eCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchH
Confidence            4678999   56666666667899999999999999999999999997776 333332222110    0    1233444


Q ss_pred             HHHHHHHHHHHHHHHHH---HHhcCCce--eEeehhchhhhhh-hcchHHHHHHhhCCCEEEEcCcCCCC----------
Q psy3752         660 YMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLE-SYIPLNAIKYLEEGKVVIFAGGIGNP----------  723 (1012)
Q Consensus       660 ~~~~~~~~~~~~~l~~~---l~~~gi~a--~~l~~~~~~~~~~-~~~~~~l~~~L~~g~VPVi~G~~g~~----------  723 (1012)
                      ..+++++.+++.++..|   |..+++.+  +.++..++..... ......+..+|+.|.||||+++....          
T Consensus        84 ~~qa~aa~gq~~L~~~y~~~f~~~~i~~aQ~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~  163 (715)
T TIGR01092        84 DGKACAAVGQSGLMALYETMFTQLDITAAQILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQ  163 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeEEEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCccccccccccccc
Confidence            55666666666666555   88888876  3444444432222 23457888999999999998622110          


Q ss_pred             --CCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHH---h--------hhcCcccHHHHHHH
Q psy3752         724 --FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI---S--------KKLEIMDSTAFSFC  790 (1012)
Q Consensus       724 --~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~---~--------~G~~v~~~~aa~~a  790 (1012)
                        +.++|++|++||.+++||+|+++|||||||++||+ +|++++|++++..+..   .        +|||..|+.|+..|
T Consensus       164 g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a  242 (715)
T TIGR01092       164 GIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWA  242 (715)
T ss_pred             ceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHH
Confidence              45699999999999999999999999999999996 6999999988653221   1        68999999999999


Q ss_pred             HhCCCcEEEEecCCchhHHHHhcCCCcceEEEEeeeh
Q psy3752         791 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIM  827 (1012)
Q Consensus       791 ~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~~  827 (1012)
                      .++|++++|+||..+++|.+++.|+..||+|.+..+|
T Consensus       243 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~~~~  279 (715)
T TIGR01092       243 AYGGTPVIIASGTAPKNITKVVEGKKVGTLFHEDAHL  279 (715)
T ss_pred             HHCCCeEEEeCCCCcchHHHHhcCCCCceEecccchh
Confidence            9999999999999999999999999999999877554

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed

Probab=99.90  E-value=2.2e-23  Score=226.01  Aligned_cols=225  Identities=21%  Similarity=0.223  Sum_probs=172.6

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccc---hhhHhHHHHHHHHHhCCCeEEEEEccch----Hhhhhccccc-CCCcchHHHHH
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINS---SIIKNIISEISEIVSCGIELAIVIGGGN----ICRGISNKIQ-NIDRSTADYMG  662 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~---~~i~~ia~~I~~l~~~G~~vvIVhGGG~----~~~~~~~~~~-~~~~~~~~~~~  662 (1012)
                      ++|+++  +|.++...+......   +.++..|++|+.+.+.|++++|+||+|+    .+++...... +.++.++|.++
T Consensus         4 ~ivval--gGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~   81 (313)
T PRK12454          4 RIVIAL--GGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAG   81 (313)
T ss_pred             eEEEEe--ChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhh
Confidence            567776  888888654332332   4899999999999999999999999974    5555433333 36778899999


Q ss_pred             HHHHHHHHHHHHHH----HHhcCCceeEeehhch-----------------h----------------------------
Q psy3752         663 MLATIINSLALFDI----LNKSGIISHVMSAISI-----------------E----------------------------  693 (1012)
Q Consensus       663 ~~~~~~~~~~l~~~----l~~~gi~a~~l~~~~~-----------------~----------------------------  693 (1012)
                      ..++|+.++.|+.+    |...|+.....+..+.                 +                            
T Consensus        82 a~sqG~igy~l~~al~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~R  161 (313)
T PRK12454         82 AMTQGWIGYMIQQALRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGWR  161 (313)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCceE
Confidence            99999988887776    6777766533332211                 0                            


Q ss_pred             ------hhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCc-------------cHHHHHHHHHhcCCceEEeeeccccccc
Q psy3752         694 ------KFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIYN  754 (1012)
Q Consensus       694 ------~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s-------------~D~~Aa~lA~~l~Ad~liilTDVdGVy~  754 (1012)
                            ...+.++.+.+..+|++|.|||++|+.|+|.++             +|.+|+++|..|+||+|+|+|||||||+
T Consensus       162 rvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~  241 (313)
T PRK12454        162 RVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYL  241 (313)
T ss_pred             EEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeC
Confidence                  002234578899999999999999987776543             5999999999999999999999999998


Q ss_pred             cCCcCCcCcccccccCHHHHHh--------hhcCcccHHHH-HHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         755 SDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       755 ~dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      +++  .|++++|++++..++.+        .|+|.+|+.|+ +++.+.+.+++|++   ++++.++|.|+ .||+|.+
T Consensus       242 ~~~--~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~  313 (313)
T PRK12454        242 NYG--KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP  313 (313)
T ss_pred             CCC--CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence            743  47899999999887654        58899999988 55555567888874   56799999998 7999963

>PRK12353 putative amino acid kinase; Reviewed

Probab=99.90  E-value=2.3e-23  Score=230.48  Aligned_cols=226  Identities=22%  Similarity=0.216  Sum_probs=160.5

Q ss_pred             HHHHHHHHhhhhhhhcC-CCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhccccc---CCCcchHHHH
Q psy3752         590 SLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ---NIDRSTADYM  661 (1012)
Q Consensus       590 ~i~v~K~~~~g~~~~~~-~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~---~~~~~~~~~~  661 (1012)
                      +++|+|+  +|+++.++ ++..++.+.+..++++|+.+...|+++|||||||    +.+++......   .....+.+..
T Consensus         3 ~~iVIkl--GG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (314)
T PRK12353          3 KKIVVAL--GGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVC   80 (314)
T ss_pred             cEEEEEE--CHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHH
Confidence            4567885  56666543 2345899999999999999999999999999995    44443322210   1112223333


Q ss_pred             HHHHHHHHHH----HHHHHHHhcCCce--------eEeehhchh--h-------h------------------------h
Q psy3752         662 GMLATIINSL----ALFDILNKSGIIS--------HVMSAISIE--K-------F------------------------L  696 (1012)
Q Consensus       662 ~~~~~~~~~~----~l~~~l~~~gi~a--------~~l~~~~~~--~-------~------------------------~  696 (1012)
                      ....+++.+.    .+...|..+|+..        +.+++.+..  .       +                        .
T Consensus        81 ~a~~qg~l~~~l~~~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (314)
T PRK12353         81 GAMSQGYIGYHLQNALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGY  160 (314)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCcee
Confidence            3444443333    3444477777622        222332210  0       0                        0


Q ss_pred             ----------hhcchHHHHHHhhCCCEEEEcCcCCCCC-------------CccHHHHHHHHHhcCCceEEeeecccccc
Q psy3752         697 ----------ESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIY  753 (1012)
Q Consensus       697 ----------~~~~~~~l~~~L~~g~VPVi~G~~g~~~-------------~s~D~~Aa~lA~~l~Ad~liilTDVdGVy  753 (1012)
                                ..++.+.+..+|+.|.|||++|+.|.|.             .++|++|+++|.+++||+|+++|||||||
T Consensus       161 r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy  240 (314)
T PRK12353        161 RRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVY  240 (314)
T ss_pred             EeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence                      0135688999999999999998765543             33699999999999999999999999999


Q ss_pred             ccCCcCCcCcccccccCHHHHHh--------hhcCcccHHHHHHHH--hCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         754 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       754 ~~dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~~a~--~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      ++||  +|++++|+++++.++.+        +|+|.+|+.||..+.  +.|++++|++   ++++.++++|+ .||+|.+
T Consensus       241 ~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~  314 (314)
T PRK12353        241 INFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK  314 (314)
T ss_pred             CCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence            9766  48899999999876644        588999999886665  7789999997   67899999998 8999964

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=99.90  E-value=9.3e-23  Score=224.02  Aligned_cols=208  Identities=18%  Similarity=0.162  Sum_probs=167.2

Q ss_pred             cchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-------cCC---CcchHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3752         612 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QNI---DRSTADYMGMLATIINSLALFDILNKSG  681 (1012)
Q Consensus       612 d~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~g  681 (1012)
                      ++.....++++|+.|...|.++|||||||.+........       .|+   ++.+++...++.++..+..+++.|..+|
T Consensus        37 ~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~L~~~G  116 (284)
T CHL00202         37 NLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVGSINANG  116 (284)
T ss_pred             CcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCC
Confidence            334566899999999999999999999996654333221       122   4556777777777888888999999999


Q ss_pred             CceeEeehhchhh---------------hhhhcchHHHHHHhhCCCEEEEcCc----CCC-CCCccHHHHHHHHHhcCCc
Q psy3752         682 IISHVMSAISIEK---------------FLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAE  741 (1012)
Q Consensus       682 i~a~~l~~~~~~~---------------~~~~~~~~~l~~~L~~g~VPVi~G~----~g~-~~~s~D~~Aa~lA~~l~Ad  741 (1012)
                      ++++++++.+.+.               .+..++.+.+..+|++|.|||+++.    .|. -++++|++|+.+|.+|+||
T Consensus       117 v~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad  196 (284)
T CHL00202        117 GKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAE  196 (284)
T ss_pred             CCeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCC
Confidence            9999999987531               1455788999999999999999973    121 2457999999999999999


Q ss_pred             eEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCCc-EEEEecCCchh-HHHHh
Q psy3752         742 IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGA-LKRVI  812 (1012)
Q Consensus       742 ~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi~-v~I~~g~~~~~-i~~~l  812 (1012)
                      +|+|+|||||||+++.  +| .++|++++.+++.+       +|+|..|+.+|..|.++|++ ++|++|+.|+. +.+++
T Consensus       197 ~li~lTdv~Gv~~~~~--d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~  273 (284)
T CHL00202        197 KLILLTDTPGILADIN--DP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEIL  273 (284)
T ss_pred             EEEEEeCChhhcCCCC--CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHh
Confidence            9999999999998532  13 37899998877654       58999999999999999986 78999999987 57889


Q ss_pred             cCCCcceEEE
Q psy3752         813 EGKNEGTLVY  822 (1012)
Q Consensus       813 ~Ge~~GT~I~  822 (1012)
                      .++..||+|.
T Consensus       274 ~~~g~GT~i~  283 (284)
T CHL00202        274 TEKGIGSMLV  283 (284)
T ss_pred             cCCCCceEEe
Confidence            8888999985

>PLN02512 acetylglutamate kinase

Probab=99.90  E-value=4.6e-23  Score=228.72  Aligned_cols=208  Identities=17%  Similarity=0.194  Sum_probs=166.6

Q ss_pred             chhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccc---c----cCC---CcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3752         613 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---I----QNI---DRSTADYMGMLATIINSLALFDILNKSGI  682 (1012)
Q Consensus       613 ~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~---~----~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~gi  682 (1012)
                      ++....++++|+.+...|.++|||||||.+.......   .    .|+   +...++.+.++..+..+..+++.|.++|+
T Consensus        62 ~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv  141 (309)
T PLN02512         62 PELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGG  141 (309)
T ss_pred             hhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence            3456678899998888999999999999665543322   1    122   44556667777777788889999999999


Q ss_pred             ceeEeehhchh----------------hhhhhcchHHHHHHhhCCCEEEEcCcC----CC-CCCccHHHHHHHHHhcCCc
Q psy3752         683 ISHVMSAISIE----------------KFLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTTAALRAAEIKAE  741 (1012)
Q Consensus       683 ~a~~l~~~~~~----------------~~~~~~~~~~l~~~L~~g~VPVi~G~~----g~-~~~s~D~~Aa~lA~~l~Ad  741 (1012)
                      +++++++.+.+                ..+..++.+.+..+|+.|.|||++|..    |. -++++|++|+.+|..|+||
T Consensus       142 ~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad  221 (309)
T PLN02512        142 TAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAE  221 (309)
T ss_pred             CeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCC
Confidence            99999987742                124567889999999999999999831    11 2357999999999999999


Q ss_pred             eEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCCc-EEEEecCCchhHH-HHh
Q psy3752         742 IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGALK-RVI  812 (1012)
Q Consensus       742 ~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi~-v~I~~g~~~~~i~-~~l  812 (1012)
                      +|+++|||||||+++|   +++++|++++.+++.+       +|+|..|+.++..+.+.|++ ++|++|..|+.+. .++
T Consensus       222 ~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~  298 (309)
T PLN02512        222 KLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEIL  298 (309)
T ss_pred             EEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHh
Confidence            9999999999999864   3478899999877654       69999999999988898994 8999999998865 678


Q ss_pred             cCCCcceEEEE
Q psy3752         813 EGKNEGTLVYE  823 (1012)
Q Consensus       813 ~Ge~~GT~I~~  823 (1012)
                      .++..||+|.+
T Consensus       299 ~~~~~GT~I~~  309 (309)
T PLN02512        299 TDEGAGTMITG  309 (309)
T ss_pred             cCCCCeeEEeC
Confidence            88889999964

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.89  E-value=1e-22  Score=248.85  Aligned_cols=233  Identities=18%  Similarity=0.228  Sum_probs=175.0

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc----chHhhhhcccccC----C--CcchH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQN----I--DRSTA  658 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG----G~~~~~~~~~~~~----~--~~~~~  658 (1012)
                      .+++|+|+   |++.+++..+.++...+.+++++|+++++.|+++|||+||    |+...+.......    +  +....
T Consensus        15 ~~~iViK~---G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~   91 (718)
T PLN02418         15 VKRVVIKV---GTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMEL   91 (718)
T ss_pred             CCEEEEEe---CCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchH
Confidence            45789995   5555556666799999999999999999999999999998    4555544332111    1  12233


Q ss_pred             HHHHHHHHHHH---HHHHHHHHHhcCCcee--Eeehhchhhh-hhhcchHHHHHHhhCCCEEEEcCcCCCC---------
Q psy3752         659 DYMGMLATIIN---SLALFDILNKSGIISH--VMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP---------  723 (1012)
Q Consensus       659 ~~~~~~~~~~~---~~~l~~~l~~~gi~a~--~l~~~~~~~~-~~~~~~~~l~~~L~~g~VPVi~G~~g~~---------  723 (1012)
                      +. +.+++.++   ..++..+|..+|+++.  .++..++... ........+..+|+.|.|||+++.....         
T Consensus        92 ~~-qa~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~  170 (718)
T PLN02418         92 DG-KACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDS  170 (718)
T ss_pred             HH-HHHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccc
Confidence            33 33344333   4455556999999874  3443444322 2233457888899999999998732211         


Q ss_pred             --CC-ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHH---H--------hhhcCcccHHHHHH
Q psy3752         724 --FF-TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEV---I--------SKKLEIMDSTAFSF  789 (1012)
Q Consensus       724 --~~-s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~---~--------~~G~~v~~~~aa~~  789 (1012)
                        .+ .+|++|++||.+++||.|+|+|||||||++||+ +|++++|++++..+.   .        -+|||.+|+.|+..
T Consensus       171 ~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~  249 (718)
T PLN02418        171 SGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVN  249 (718)
T ss_pred             cCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHH
Confidence              23 399999999999999999999999999999997 589999999865332   1        17899999999999


Q ss_pred             HHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEeee
Q psy3752         790 CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI  826 (1012)
Q Consensus       790 a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~  826 (1012)
                      +.++|++++|+||..|+++.++|.|+.+||+|.+..+
T Consensus       250 a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~  286 (718)
T PLN02418        250 AASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDAH  286 (718)
T ss_pred             HHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccccc
Confidence            9999999999999999999999999999999987533

>PRK08210 aspartate kinase I; Reviewed

Probab=99.89  E-value=7.6e-23  Score=237.24  Aligned_cols=215  Identities=24%  Similarity=0.362  Sum_probs=164.0

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chH----h----hhhccc-ccCCCcchHHH
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNI----C----RGISNK-IQNIDRSTADY  660 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~----~----~~~~~~-~~~~~~~~~~~  660 (1012)
                      ++|+|+  +|+++       -+.+.+.+++++|+.+.+.|++++||||| |..    .    .+.... ....++...+.
T Consensus         3 ~iViK~--GGs~l-------~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~   73 (403)
T PRK08210          3 IIVQKF--GGTSV-------STEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDL   73 (403)
T ss_pred             eEEEeE--CCccc-------CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHH
Confidence            457785  44433       24466899999999999999999888865 211    1    111111 11123344444


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCC---CC---C
Q psy3752         661 MGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F  725 (1012)
Q Consensus       661 ~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~---~~---~  725 (1012)
                      +...+....+.+++.+|..+|++++++++.+....         +...+.+.+..+++.|.|||++|+.|.   +.   +
T Consensus        74 l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l  153 (403)
T PRK08210         74 LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTL  153 (403)
T ss_pred             HHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEe
Confidence            43333333566788999999999999998765211         234567889999999999999997542   21   2


Q ss_pred             ---ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEE
Q psy3752         726 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV  799 (1012)
Q Consensus       726 ---s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I  799 (1012)
                         ++|++|+.+|.+|+||+++|||||||||++||+.+|++++|++++++|+.+   .|.+++|+.|+++|.++++|++|
T Consensus       154 ~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i  233 (403)
T PRK08210        154 GRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRI  233 (403)
T ss_pred             CCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEE
Confidence               489999999999999999999999999999999999999999999998877   79999999999999999999999


Q ss_pred             EecCCchhHHHHhcCCCcceEEEEe
Q psy3752         800 FSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       800 ~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      .|++.+          ..||+|.+.
T Consensus       234 ~~~~~~----------~~gT~I~~~  248 (403)
T PRK08210        234 RSTYSD----------SPGTLITSL  248 (403)
T ss_pred             EecCCC----------cCCcEEEec
Confidence            999864          249999764

>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

Probab=99.89  E-value=1.3e-22  Score=223.59  Aligned_cols=149  Identities=19%  Similarity=0.292  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHhcCCceeEeehhchhhhh-------------hhcchHHHHHHhhCCCEEEEcCcCCCC--C----C
Q psy3752         665 ATIINSLALFDILNKSGIISHVMSAISIEKFL-------------ESYIPLNAIKYLEEGKVVIFAGGIGNP--F----F  725 (1012)
Q Consensus       665 ~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~~-------------~~~~~~~l~~~L~~g~VPVi~G~~g~~--~----~  725 (1012)
                      +..+++.+++.+|++.|++++++++.++..+.             .......+..+++.|.|||++||.|..  +    .
T Consensus       125 GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~g~~ttl  204 (298)
T cd04244         125 GERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTL  204 (298)
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCCCCEEEe
Confidence            33347888999999999999999998763110             001112345667889999999986632  1    1


Q ss_pred             ---ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEE
Q psy3752         726 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV  799 (1012)
Q Consensus       726 ---s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I  799 (1012)
                         .+|++|+.+|.+|+|+.++|||||||||++||+.+|+++++++++++|+.+   .|++++|+.|+.+|.++|||++|
T Consensus       205 gRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i  284 (298)
T cd04244         205 GRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRV  284 (298)
T ss_pred             cCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEE
Confidence               389999999999999999999999999999999999999999999999987   69999999999999999999999


Q ss_pred             EecCCchhHHHHhcCCCcceEEE
Q psy3752         800 FSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       800 ~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      .|+++|+         ..||+|+
T Consensus       285 ~n~~~p~---------~~GT~I~  298 (298)
T cd04244         285 KNTFNPE---------APGTLIT  298 (298)
T ss_pred             eeCCCCC---------CCCCEeC
Confidence            9999883         4699984

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.

>PRK12686 carbamate kinase; Reviewed

Probab=99.88  E-value=1.2e-22  Score=221.06  Aligned_cols=224  Identities=17%  Similarity=0.199  Sum_probs=167.8

Q ss_pred             HHHHHHHhhhhhhhcCC-CCcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhccccc-CCCcchHHHHHHH
Q psy3752         591 LAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDRSTADYMGML  664 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~-~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~-~~~~~~~~~~~~~  664 (1012)
                      ++|+++  +|.++...+ ........++..|++|+.|...|+++||+||+|    +.++....... ..++.++|.++..
T Consensus         4 ~iVial--GGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~   81 (312)
T PRK12686          4 KIVIAL--GGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAM   81 (312)
T ss_pred             EEEEEc--ChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhh
Confidence            456776  777776533 223445678999999999999999999999997    34443323322 3578899999999


Q ss_pred             HHHHHHHHHHHH----HHhcCCceeE--------eehhch-------------------------h------------hh
Q psy3752         665 ATIINSLALFDI----LNKSGIISHV--------MSAISI-------------------------E------------KF  695 (1012)
Q Consensus       665 ~~~~~~~~l~~~----l~~~gi~a~~--------l~~~~~-------------------------~------------~~  695 (1012)
                      ++|..+++|+..    |...++..-.        ++..+-                         +            .+
T Consensus        82 sqg~iGy~~~q~l~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rrv  161 (312)
T PRK12686         82 SQGMIGYWLQNALNNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRRV  161 (312)
T ss_pred             ccchhhHHHHHHHHHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEEe
Confidence            999999988877    4444533211        111110                         0            00


Q ss_pred             ------hhhcchHHHHHHhhCCCEEEEcCcCCCCC-------------CccHHHHHHHHHhcCCceEEeeeccccccccC
Q psy3752         696 ------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYNSD  756 (1012)
Q Consensus       696 ------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~-------------~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~d  756 (1012)
                            .+-++.+.+..++++|+|||.+|+.|.|.             +++|++|++||.+|+||+|+|+|||||||++ 
T Consensus       162 V~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~-  240 (312)
T PRK12686        162 VPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN-  240 (312)
T ss_pred             eCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-
Confidence                  12267889999999999999988755332             3479999999999999999999999999995 


Q ss_pred             CcCCcCcccccccCHHHHHh--------hhcCcccHHHHHHHHhC--CCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         757 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQ--KLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       757 P~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~~a~~~--gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      |. .|++++|++++.+++..        +|+|.+|+.|+..+.+.  |.+++|++   ++++.++|.|+ .||+|.
T Consensus       241 ~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~  311 (312)
T PRK12686        241 FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT  311 (312)
T ss_pred             CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence            43 48899999999877654        59999999998887754  56888886   67788999998 799985

>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis

Probab=99.88  E-value=7.4e-23  Score=225.20  Aligned_cols=218  Identities=20%  Similarity=0.241  Sum_probs=167.8

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-------cCC---CcchHHH
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QNI---DRSTADY  660 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~  660 (1012)
                      .+|+|+  +|+++ +      ++.....++++++.+...|.++|||||||..........       .++   ++..++.
T Consensus        16 ~~ViKl--GGs~i-~------~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~   86 (279)
T cd04250          16 TVVIKY--GGNAM-K------DEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEI   86 (279)
T ss_pred             EEEEEE--ChHHh-c------CccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHH
Confidence            567885  44432 2      233567788989888888999999999986554333221       111   3333445


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCceeEeehhchhh---------------------hhhhcchHHHHHHhhCCCEEEEcCc
Q psy3752         661 MGMLATIINSLALFDILNKSGIISHVMSAISIEK---------------------FLESYIPLNAIKYLEEGKVVIFAGG  719 (1012)
Q Consensus       661 ~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~---------------------~~~~~~~~~l~~~L~~g~VPVi~G~  719 (1012)
                      ..++.++..+..+++.|.++|++++++++.+.+.                     .+..++.+.+..+|+.|.|||++| 
T Consensus        87 ~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~-  165 (279)
T cd04250          87 VEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAP-  165 (279)
T ss_pred             HHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcC-
Confidence            5555445566778889999999999999986421                     134567899999999999999998 


Q ss_pred             CCC--C----CCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHH
Q psy3752         720 IGN--P----FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTA  786 (1012)
Q Consensus       720 ~g~--~----~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~a  786 (1012)
                      .|.  .    ++++|++|+.+|..|+||.|+++|||||||++||+   .+++|++++++|+.+       +|+|..|+.+
T Consensus       166 ~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~  242 (279)
T cd04250         166 VGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEA  242 (279)
T ss_pred             CccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHH
Confidence            232  1    24599999999999999999999999999999984   378999999877654       6999999999


Q ss_pred             HHHHHhCCCc-EEEEecCCchh-HHHHhcCCCcceEE
Q psy3752         787 FSFCRDQKLP-IRVFSIIKSGA-LKRVIEGKNEGTLV  821 (1012)
Q Consensus       787 a~~a~~~gi~-v~I~~g~~~~~-i~~~l~Ge~~GT~I  821 (1012)
                      |..+.++|++ ++|+||..|++ +.+++.++..||+|
T Consensus       243 a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i  279 (279)
T cd04250         243 CIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI  279 (279)
T ss_pred             HHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence            9998888885 99999999986 56788888899975

In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A

>PRK10542 glutathionine S-transferase; Provisional

Probab=99.88  E-value=1.8e-22  Score=212.12  Aligned_cols=168  Identities=22%  Similarity=0.362  Sum_probs=135.3

Q ss_pred             CceEEEEecCCC----CCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCC-CCCHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLM-SSDPLMRARARLMLLNFE   74 (1012)
Q Consensus         1 I~ye~~~Vd~~~----~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~-p~~~~era~v~~~~~~~~   74 (1012)
                      |||+.+.|++..    .+++|+++||.|+||+|+ +||.+|+||.+|++||+++||+..++ |.++.+|+++++|+.+..
T Consensus        23 i~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~~~l~~p~~~~~ra~~~~~~~~~~  102 (201)
T PRK10542         23 LDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVGSLSRYHTIEWLNYIA  102 (201)
T ss_pred             CCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcccccCCCCCcHHHHHHHHHHHHHH
Confidence            689999999864    347899999999999998 58899999999999999999987766 567889999999877665


Q ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhH
Q psy3752          75 KEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLI  154 (1012)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~  154 (1012)
                      ..+...+......  .............+.+.|..+|++|++++||+|+++|+||+++++.+.++...+.++ +.||+|.
T Consensus       103 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~-~~~p~l~  179 (201)
T PRK10542        103 TELHKGFTPLFRP--DTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYLFTVLRWAYAVKLNL-EGLEHIA  179 (201)
T ss_pred             hhhhhhhhhccCC--CChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHHHHHHHHhhccCCCc-ccchHHH
Confidence            5554432222111  111222244567788999999999998999999999999999999998887666654 4699999


Q ss_pred             HHHHHHhcCCccccccc
Q psy3752         155 KYAERIFSRPSYMESLT  171 (1012)
Q Consensus       155 aw~~ri~~rp~~~~~lt  171 (1012)
                      +|++++.+||+|++++.
T Consensus       180 ~w~~~~~~~p~~k~~~~  196 (201)
T PRK10542        180 AYMQRVAERPAVAAALK  196 (201)
T ss_pred             HHHHHHHcCHHHHHHHH
Confidence            99999999999998764

>PRK07431 aspartate kinase; Provisional

Probab=99.88  E-value=2.5e-22  Score=243.53  Aligned_cols=214  Identities=22%  Similarity=0.267  Sum_probs=165.9

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc-chHhhhhcccccCC-CcchHHHHHHHHH-HH
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNI-DRSTADYMGMLAT-II  668 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG-G~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~  668 (1012)
                      +|+|+  +|+++       .+.+.+++++++|+.+.+.|+++|||||| |.....+......+ ++...+...++.+ |+
T Consensus         4 iViKf--GGss~-------~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~t~~~~~~~~~~~ls~Ge   74 (587)
T PRK07431          4 IVQKF--GGTSV-------GSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSNPPRREMDMLLSTGE   74 (587)
T ss_pred             EEEEE--Cchhc-------CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHhH
Confidence            46675  44443       57889999999999999999999999996 64443332221111 2223333344433 43


Q ss_pred             --HHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCCC-----Cc------
Q psy3752         669 --NSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-----FT------  726 (1012)
Q Consensus       669 --~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~-----~s------  726 (1012)
                        +..+++.+|.++|++++++++.++...         +..++.+.+..+++.|.|||++|+.|...     .+      
T Consensus        75 ~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrgg  154 (587)
T PRK07431         75 QVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGG  154 (587)
T ss_pred             HHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCc
Confidence              455666789999999999998876322         22345678999999999999999766421     22      


Q ss_pred             cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecC
Q psy3752         727 TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSII  803 (1012)
Q Consensus       727 ~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~  803 (1012)
                      +|++|+++|..|+||+|++||||||||++||+.+|++++|++++++|+.+   .|.+++++.|+.+|.++|+|++|.|++
T Consensus       155 sD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~  234 (587)
T PRK07431        155 SDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSW  234 (587)
T ss_pred             hHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCC
Confidence            79999999999999999999999999999999999999999999998877   689999999999999999999999987


Q ss_pred             CchhHHHHhcCCCcceEEEEe
Q psy3752         804 KSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       804 ~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      .          +..||+|.+.
T Consensus       235 ~----------~~~GT~i~~~  245 (587)
T PRK07431        235 S----------DAPGTLVTSP  245 (587)
T ss_pred             C----------CCCCeEEEeC
Confidence            3          2359999754

>PRK00942 acetylglutamate kinase; Provisional

Probab=99.88  E-value=1.5e-22  Score=223.48  Aligned_cols=217  Identities=20%  Similarity=0.215  Sum_probs=168.3

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-------cCC---CcchHHH
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QNI---DRSTADY  660 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~  660 (1012)
                      ++|+|+  +|+++ +.      .+.+..++++|+.+.+.|.++|||||||..........       .++   +...++.
T Consensus        25 ~iViK~--GGs~l-~~------~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~~   95 (283)
T PRK00942         25 TIVIKY--GGNAM-TD------EELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETMEV   95 (283)
T ss_pred             eEEEEE--ChHHh-cC------cchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHHH
Confidence            468885  44443 22      24577899999999999999999999985554433211       111   2334454


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCceeEeehhchh----------------hhhhhcchHHHHHHhhCCCEEEEcCcCCC--
Q psy3752         661 MGMLATIINSLALFDILNKSGIISHVMSAISIE----------------KFLESYIPLNAIKYLEEGKVVIFAGGIGN--  722 (1012)
Q Consensus       661 ~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~----------------~~~~~~~~~~l~~~L~~g~VPVi~G~~g~--  722 (1012)
                      ..++.++..+..+.+.|..+|++++++++.+.+                ..+..++.+.+..+|++|.|||+++ .|.  
T Consensus        96 ~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~-~~~~~  174 (283)
T PRK00942         96 VEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISP-IGVGE  174 (283)
T ss_pred             HHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcC-cEECC
Confidence            445444555677778899999999999987642                1235578899999999999999997 221  


Q ss_pred             ----CCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHH
Q psy3752         723 ----PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCR  791 (1012)
Q Consensus       723 ----~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~  791 (1012)
                          -++++|++|+.||..|+||+|+++|||||||++      ++++|++++++|+.+       +|+|..++.+|..+.
T Consensus       175 ~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~  248 (283)
T PRK00942        175 DGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAA  248 (283)
T ss_pred             CCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHH
Confidence                135599999999999999999999999999986      378899999887654       589999999998888


Q ss_pred             hCCC-cEEEEecCCchh-HHHHhcCCCcceEEEE
Q psy3752         792 DQKL-PIRVFSIIKSGA-LKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       792 ~~gi-~v~I~~g~~~~~-i~~~l~Ge~~GT~I~~  823 (1012)
                      +.|+ +++|++|..|++ +.+++.|+.+||+|.+
T Consensus       249 ~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~  282 (283)
T PRK00942        249 RGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP  282 (283)
T ss_pred             HhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence            8887 699999999999 8889999999999986

>KOG0868|consensus

Probab=99.88  E-value=2.5e-22  Score=192.28  Aligned_cols=170  Identities=26%  Similarity=0.450  Sum_probs=140.7

Q ss_pred             CceEEEEecCCC----CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKE   76 (1012)
Q Consensus         1 I~ye~~~Vd~~~----~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~   76 (1012)
                      |+||+++|++..    ...+|+++||+++||+|++||.+|+||.||++||+++||+++|+|.|+..|+.+++....+.+.
T Consensus        29 iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ppLLP~d~~KRA~~r~i~~~i~sg  108 (217)
T KOG0868|consen   29 IDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDPPLLPKDPHKRAKARAISLLIASG  108 (217)
T ss_pred             CCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHhC
Confidence            689999999976    3468999999999999999999999999999999999999999999999999999997777766


Q ss_pred             HHHHH--HHhhhccccccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCch
Q psy3752          77 IFIHL--YMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP  152 (1012)
Q Consensus        77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~  152 (1012)
                      +.+..  ........+........+...+.+.|.+||+.|.  .++|.+||++|+||+++.|.++....+..++.. ||-
T Consensus       109 IQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiADl~L~pqv~nA~rf~vdl~P-YPt  187 (217)
T KOG0868|consen  109 IQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIADLCLPPQVYNANRFHVDLTP-YPT  187 (217)
T ss_pred             CCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehhhhccchhhhhhhhccccCCc-Cch
Confidence            54321  1111111122212234455778899999999986  578999999999999999999999888888765 999


Q ss_pred             hHHHHHHHhcCCccccccc
Q psy3752         153 LIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       153 L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +.+..+.+.+.|+|+.+.+
T Consensus       188 i~ri~e~l~elpaFq~ahP  206 (217)
T KOG0868|consen  188 ITRINEELAELPAFQAAHP  206 (217)
T ss_pred             HHHHHHHHHhCHHHHhcCC
Confidence            9999999999999998765

>KOG0406|consensus

Probab=99.88  E-value=9.8e-22  Score=202.42  Aligned_cols=175  Identities=27%  Similarity=0.422  Sum_probs=143.6

Q ss_pred             CceEEEEecCCCCCchhhhcC-CCCCccEEEeCCEeeccHHHHHHHHhhhCC-CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMN-PYGQVPILVERDLILYESNIINEYIDERFP-YPQLMSSDPLMRARARLMLLNFEKEIF   78 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~in-P~gkVPvL~ddg~~I~ES~aIl~YL~~~~p-~~~L~p~~~~era~v~~~~~~~~~~~~   78 (1012)
                      |+||++++|+.++++||++.| |.++||||+++|..|+||..|++||++.+| +++++|.||.+|++++.|..+++..++
T Consensus        33 I~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~iLP~DPy~Ra~arfwa~~id~~~~  112 (231)
T KOG0406|consen   33 IPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPILPSDPYERAQARFWAEYIDKKVF  112 (231)
T ss_pred             CceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHhHHH
Confidence            689999999999999999999 699999999999999999999999999999 699999999999999999998887654


Q ss_pred             HHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc-CCCcccCCCcCHHHHHHHHHhhhhhhc----c---ccccCCC
Q psy3752          79 IHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAPLLWRLDYY----G---INLSKSA  150 (1012)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~-~~~fL~Gd~~TlADi~l~~~L~~l~~~----~---~~l~~~~  150 (1012)
                      ...........   .+..+....++...|..||+.|. +++|+.|+++++.|++++|++.+....    +   +.....+
T Consensus       113 ~~~~~~~~~~~---~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~  189 (231)
T KOG0406|consen  113 FVGRFVVAAKG---GEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEET  189 (231)
T ss_pred             HHHHHHHhhcC---chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCC
Confidence            43322222111   12224566778899999999998 889999999999999999777544321    1   2334679


Q ss_pred             chhHHHHHHHhcCCccccccchhhhhhh
Q psy3752         151 SPLIKYAERIFSRPSYMESLTPAEKIMQ  178 (1012)
Q Consensus       151 P~L~aw~~ri~~rp~~~~~lt~~~~l~~  178 (1012)
                      |.|.+|++||.++|++++++++.+.+.+
T Consensus       190 P~L~~W~~~~~~~~~V~~~~p~~e~~~e  217 (231)
T KOG0406|consen  190 PKLIKWIKRMKEDEAVKAVLPDSEKVVE  217 (231)
T ss_pred             ccHHHHHHHHhcChhHHhhcCCHHHHHH
Confidence            9999999999999999999886555543

>PLN02395 glutathione S-transferase

Probab=99.88  E-value=4.7e-22  Score=211.34  Aligned_cols=171  Identities=25%  Similarity=0.337  Sum_probs=134.0

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC--CCCCCCCHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY--PQLMSSDPLMRARARLMLLNFEK   75 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~--~~L~p~~~~era~v~~~~~~~~~   75 (1012)
                      ++|+.+.+++..   .+++|+++||.|+||+|+++|.+|+||.+|++||+++|+.  ++|+|.++.+++++++|+.+...
T Consensus        25 l~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~  104 (215)
T PLN02395         25 VEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQGPDLLGKTIEERGQVEQWLDVEAT  104 (215)
T ss_pred             CCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCCcCcCCCChhHHHHHHHHHHHHHH
Confidence            689999999863   5789999999999999999999999999999999999975  36999999999999999776554


Q ss_pred             HHHHH----HHHhh---hccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-c-ccc
Q psy3752          76 EIFIH----LYMLE---NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-G-INL  146 (1012)
Q Consensus        76 ~~~~~----~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~-~~l  146 (1012)
                      .+.+.    .....   ...............+.+.+.++.||++|++++|++|+++|+||+++++++.++... + ...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~~~  184 (215)
T PLN02395        105 SYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGDFVSLADLAHLPFTEYLVGPIGKAYL  184 (215)
T ss_pred             hcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcCHHHHHHHHHHHHHhcccchhhh
Confidence            33211    11110   011122233445567788999999999999889999999999999999988776321 2 123


Q ss_pred             cCCCchhHHHHHHHhcCCccccccc
Q psy3752         147 SKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       147 ~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      .+.||+|.+|++++.+||+|++++.
T Consensus       185 ~~~~p~L~~w~~~~~~rp~~k~~~~  209 (215)
T PLN02395        185 IKDRKHVSAWWDDISSRPAWKEVLA  209 (215)
T ss_pred             hccCchHHHHHHHHHcChHHHHHHH
Confidence            4568999999999999999998765

>PRK06291 aspartate kinase; Provisional

Probab=99.88  E-value=2.4e-20  Score=219.15  Aligned_cols=206  Identities=20%  Similarity=0.281  Sum_probs=156.3

Q ss_pred             cccchhhHhHHHHHHHHHhCCCeEEEEEcc--c--hHhhhhcccc-----------------------------------
Q psy3752         610 NINSSIIKNIISEISEIVSCGIELAIVIGG--G--NICRGISNKI-----------------------------------  650 (1012)
Q Consensus       610 ~id~~~i~~ia~~I~~l~~~G~~vvIVhGG--G--~~~~~~~~~~-----------------------------------  650 (1012)
                      .-+.+.++++++.|.+....|.++|+|+|+  |  +.+.......                                   
T Consensus        12 v~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~   91 (465)
T PRK06291         12 VGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRERHYKAIEEAIKDPDIRE   91 (465)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHhhcChhhHH
Confidence            346778999999998766678899999997  4  2221111000                                   


Q ss_pred             -----------------------cCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhh---------hh-
Q psy3752         651 -----------------------QNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LE-  697 (1012)
Q Consensus       651 -----------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~-  697 (1012)
                                             ..+++...|.....+..+++.+++.+|++.|+++.++++.+.+.+         +. 
T Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~  171 (465)
T PRK06291         92 EVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLP  171 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeech
Confidence                                   001122233333333334788899999999999999999875211         00 


Q ss_pred             ---hcchHHHHHHhhCCCEEEEcCcCCCC---C---C---ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCccc
Q psy3752         698 ---SYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAII  765 (1012)
Q Consensus       698 ---~~~~~~l~~~L~~g~VPVi~G~~g~~---~---~---s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~  765 (1012)
                         ......+..+++.|.|||++||.|..   .   .   ++|++|+.+|..|+||.+++||||||||++||+.+|++++
T Consensus       172 ~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~  251 (465)
T PRK06291        172 KTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARV  251 (465)
T ss_pred             hhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeE
Confidence               11123566678899999999976521   1   1   3899999999999999999999999999999999999999


Q ss_pred             ccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         766 YKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       766 i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      +++++++|+.+   .|++++|+.|+.+|.++|+|++|.|+++|+         ..||+|...
T Consensus       252 i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~---------~~gt~i~~~  304 (465)
T PRK06291        252 IPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPE---------FPGTLITSD  304 (465)
T ss_pred             ccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCC---------CCceEEEec
Confidence            99999999877   699999999999999999999999999873         468999753

>PLN02473 glutathione S-transferase

Probab=99.88  E-value=6e-22  Score=210.37  Aligned_cols=171  Identities=20%  Similarity=0.301  Sum_probs=134.2

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC--CCCCCCHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP--QLMSSDPLMRARARLMLLNFEK   75 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~--~L~p~~~~era~v~~~~~~~~~   75 (1012)
                      |||+.+.+++.+   .+++|+++||+|+||+|++||.+|+||.||++||+++||+.  +|+|.++.+|+++++|+.+...
T Consensus        26 i~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~  105 (214)
T PLN02473         26 IEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQGTDLLGKTLEHRAIVDQWVEVENN  105 (214)
T ss_pred             CCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHHHHHHh
Confidence            689999999864   67889999999999999999999999999999999999753  6999999999999999765544


Q ss_pred             HHHHH----HHH-hh--hccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-c-ccc
Q psy3752          76 EIFIH----LYM-LE--NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-G-INL  146 (1012)
Q Consensus        76 ~~~~~----~~~-~~--~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~-~~l  146 (1012)
                      .+...    ... ..  ....+......+.....+.+.|+.||++|++++|++|+++|+||+++++.+.++... . ..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~~~~~~~~~~~~~~~~~~  185 (214)
T PLN02473        106 YFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDEFTLADLTHMPGMRYIMNETSLSGL  185 (214)
T ss_pred             cccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHHHhccccHHH
Confidence            33211    111 11  111222333445566788899999999999889999999999999999998776432 1 123


Q ss_pred             cCCCchhHHHHHHHhcCCccccccc
Q psy3752         147 SKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       147 ~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      .+.||+|.+|++++.+||+|++++.
T Consensus       186 ~~~~P~l~~w~~~~~~~p~~~~~~~  210 (214)
T PLN02473        186 VTSRENLNRWWNEISARPAWKKLME  210 (214)
T ss_pred             HhcCHHHHHHHHHHhcChhhHHHHH
Confidence            4679999999999999999997654

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

Probab=99.88  E-value=2.1e-21  Score=212.82  Aligned_cols=202  Identities=19%  Similarity=0.219  Sum_probs=153.7

Q ss_pred             cccchhhHhHHHHHHHHHhCCCeEEEEEcc--c--hHhhhhcccc-----------------------------------
Q psy3752         610 NINSSIIKNIISEISEIVSCGIELAIVIGG--G--NICRGISNKI-----------------------------------  650 (1012)
Q Consensus       610 ~id~~~i~~ia~~I~~l~~~G~~vvIVhGG--G--~~~~~~~~~~-----------------------------------  650 (1012)
                      .-+.+.++++++.|....+.|.++++|+|+  |  +.+.......                                   
T Consensus        11 v~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L~~~~~~~i~~~~   90 (295)
T cd04259          11 VSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEVDADALLANDL   90 (295)
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            356778999999887655677889999997  4  2211110000                                   


Q ss_pred             -------------cCCCcchHHHHHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhhh----------------hhc
Q psy3752         651 -------------QNIDRSTADYMGMLATI--INSLALFDILNKSGIISHVMSAISIEKFL----------------ESY  699 (1012)
Q Consensus       651 -------------~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~~----------------~~~  699 (1012)
                                   ...++.  ....+++.|  +++.+++.+|++.|+++..+++.++....                ...
T Consensus        91 ~~l~~~l~~~~~~~~~~~~--~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~  168 (295)
T cd04259          91 AQLQRWLTGISLLKQASPR--TRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEY  168 (295)
T ss_pred             HHHHHHHHHhhhhccCCHH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhh
Confidence                         001222  234444455  47888999999999999999987651110                112


Q ss_pred             chHHHHHHhhC-CCEEEEcCcCCCC--C-Cc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCccccccc
Q psy3752         700 IPLNAIKYLEE-GKVVIFAGGIGNP--F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKI  769 (1012)
Q Consensus       700 ~~~~l~~~L~~-g~VPVi~G~~g~~--~-~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i  769 (1012)
                      ....+...+.. +.|||++||+|..  + .+      +|++|+.+|.+++||.+++||||||||++||+.+|++++|+++
T Consensus       169 ~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~l  248 (295)
T cd04259         169 ADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRL  248 (295)
T ss_pred             hHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEecee
Confidence            33556666665 6799999998732  1 22      9999999999999999999999999999999999999999999


Q ss_pred             CHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         770 TFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       770 ~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      +++|+.+   .|++++|+.|+.+|.++|+|++|.|+++|         +..||+|+
T Consensus       249 s~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p---------~~~GT~I~  295 (295)
T cd04259         249 DYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERP---------ELSGTLIT  295 (295)
T ss_pred             CHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCC---------CCCCcEeC
Confidence            9999876   69999999999999999999999999988         45799984

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like

Probab=99.87  E-value=2.9e-22  Score=218.15  Aligned_cols=201  Identities=19%  Similarity=0.177  Sum_probs=158.7

Q ss_pred             hhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccccc-------C---CCcchHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy3752         614 SIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ-------N---IDRSTADYMGMLATIINSLALFDILNKSGII  683 (1012)
Q Consensus       614 ~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~  683 (1012)
                      ..+.+++++|+.+...|.++|||||||...........       +   .++..++...++.++..+..++++|.++|++
T Consensus        14 ~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i~~~L~~~Gv~   93 (256)
T cd04238          14 ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKELVSLLNRAGGK   93 (256)
T ss_pred             cHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHHHHHhCCCC
Confidence            46788999999888889999999999865543332211       1   1334445555444355667788899999999


Q ss_pred             eeEeehhchh-----------------hhhhhcchHHHHHHhhCCCEEEEcCcCCC------CCCccHHHHHHHHHhcCC
Q psy3752         684 SHVMSAISIE-----------------KFLESYIPLNAIKYLEEGKVVIFAGGIGN------PFFTTDTTAALRAAEIKA  740 (1012)
Q Consensus       684 a~~l~~~~~~-----------------~~~~~~~~~~l~~~L~~g~VPVi~G~~g~------~~~s~D~~Aa~lA~~l~A  740 (1012)
                      ++++++.+.+                 ..+..++.+.+..+|++|.|||++|. |.      .+.++|++|+++|..|+|
T Consensus        94 a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~-~~~~~g~~~~~~~D~~A~~lA~~l~a  172 (256)
T cd04238          94 AVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI-AVDEDGETYNVNADTAAGAIAAALKA  172 (256)
T ss_pred             CCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCc-EECCCCcEEEECHHHHHHHHHHHcCC
Confidence            9999998752                 22445788999999999999999972 21      134599999999999999


Q ss_pred             ceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCC-cEEEEecCCchhHHHHh
Q psy3752         741 EIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVI  812 (1012)
Q Consensus       741 d~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l  812 (1012)
                      |.|+++|||||||++      ++++|++++++++.+       +|+|..++.+|..+.+.|+ +++|++|..|++|.++|
T Consensus       173 ~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l  246 (256)
T cd04238         173 EKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLEL  246 (256)
T ss_pred             CEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHH
Confidence            999999999999987      268899998877644       5899999999988888776 69999999999999999


Q ss_pred             cC-CCcceEE
Q psy3752         813 EG-KNEGTLV  821 (1012)
Q Consensus       813 ~G-e~~GT~I  821 (1012)
                      .| +..||+|
T Consensus       247 ~~~~~~GT~i  256 (256)
T cd04238         247 FTDEGIGTMI  256 (256)
T ss_pred             hcCCCCCCCC
Confidence            98 5689976

Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=99.87  E-value=5.3e-22  Score=210.94  Aligned_cols=168  Identities=21%  Similarity=0.280  Sum_probs=129.0

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEe-----CC--EeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVE-----RD--LILYESNIINEYIDERFPYPQLMSSDPLMRARARLML   70 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~d-----dg--~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~   70 (1012)
                      ||||.+.|++..   ++++|+++||.|+||+|++     ||  .+|+||.||++||+++||  .++|.++.+|+++++|+
T Consensus        24 l~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~~~~~--~l~p~~~~~ra~~~~~~  101 (215)
T PRK13972         24 LDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTG--LFLSHETRERAATLQWL  101 (215)
T ss_pred             CCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHH
Confidence            689999999865   3689999999999999997     45  589999999999999986  47788999999999997


Q ss_pred             HHHHHHHHHHHHH---hhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccccc
Q psy3752          71 LNFEKEIFIHLYM---LENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLS  147 (1012)
Q Consensus        71 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~  147 (1012)
                      .+....+.+.+..   .............+.....+.+.|..||.+|.+++||+|+++|+|||++++++.+....+.++ 
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~-  180 (215)
T PRK13972        102 FWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWTRQRIDL-  180 (215)
T ss_pred             HHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCCCCCHHHHHHHHHHHHHhhcCCcc-
Confidence            6665443322110   000011112233445567788899999999998999999999999999988774433334443 


Q ss_pred             CCCchhHHHHHHHhcCCccccccc
Q psy3752         148 KSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       148 ~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +.||+|.+|+++|.+||+|++.+.
T Consensus       181 ~~~P~l~~w~~r~~~rp~~~~~~~  204 (215)
T PRK13972        181 AMYPAVKNWHERIRSRPATGQALL  204 (215)
T ss_pred             hhCHHHHHHHHHHHhCHHHHHHHH
Confidence            569999999999999999987765

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.8e-21  Score=206.17  Aligned_cols=166  Identities=35%  Similarity=0.587  Sum_probs=135.4

Q ss_pred             CceEEEEecCCC--CCchhhhcCCCCCccEEEeCCE-eeccHHHHHHHHhhhCCCCCCCCCCHH---HHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN--KPDNIFRMNPYGQVPILVERDL-ILYESNIINEYIDERFPYPQLMSSDPL---MRARARLMLLNFE   74 (1012)
Q Consensus         1 I~ye~~~Vd~~~--~~~~~~~inP~gkVPvL~ddg~-~I~ES~aIl~YL~~~~p~~~L~p~~~~---era~v~~~~~~~~   74 (1012)
                      +||+.+.|++..  .+++|+++||.|+||+|++||. +|+||.||++||+++||++.|+|.++.   +|+++.+|..++.
T Consensus        24 ~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~l~p~~~~~r~~r~~~~~~~~~~~  103 (211)
T COG0625          24 LPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPADPLARRARALLLWWLFFAA  103 (211)
T ss_pred             CCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCCcCCCCchhHHHHHHHHHHHHHHH
Confidence            589999999984  7899999999999999998765 999999999999999997779998885   7777778866665


Q ss_pred             HHHHHHHHHhhh---ccccc-cHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCC
Q psy3752          75 KEIFIHLYMLEN---ERNKT-SIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSA  150 (1012)
Q Consensus        75 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~  150 (1012)
                      ..+.+.+.....   ..... .....+.....+...+..+|..|++++|++|++||+||+++++.+.++...+.++ +.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~tiAD~~~~~~~~~~~~~~~~~-~~~  182 (211)
T COG0625         104 SDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFTIADIALAPLLWRLALLGEEL-ADY  182 (211)
T ss_pred             hcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHhhhcCccc-ccC
Confidence            444333222111   11111 3455567778899999999999999999999999999999999999987776665 669


Q ss_pred             chhHHHHHHHhcCCccc
Q psy3752         151 SPLIKYAERIFSRPSYM  167 (1012)
Q Consensus       151 P~L~aw~~ri~~rp~~~  167 (1012)
                      |++.+|++|+.+||+++
T Consensus       183 p~l~~w~~r~~~rp~~~  199 (211)
T COG0625         183 PALKAWYERVLARPAFR  199 (211)
T ss_pred             hHHHHHHHHHHcCCchh
Confidence            99999999999999965

>PRK15113 glutathione S-transferase; Provisional

Probab=99.87  E-value=1e-21  Score=208.45  Aligned_cols=167  Identities=23%  Similarity=0.278  Sum_probs=132.2

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCC---CCCCCHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQ---LMSSDPLMRARARLMLLNFE   74 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~---L~p~~~~era~v~~~~~~~~   74 (1012)
                      |+||.+.+++.+   ..++|+++||+|+||+|++||.+|+||.||++||+++||++.   |+|.++.+|+++++|+.++.
T Consensus        31 i~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~  110 (214)
T PRK15113         31 LPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPADLQARARARQIQAWLR  110 (214)
T ss_pred             CCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCccccCCCCHHHHHHHHHHHHHHH
Confidence            689999999875   458999999999999999999999999999999999998765   99999999999999987776


Q ss_pred             HHHHHHHHHhh---hccccccHHHHHHHHHHHHHHHHHHHhcccC-CCcccCCCcCHHHHHHHHHhhhhhhccccccCCC
Q psy3752          75 KEIFIHLYMLE---NERNKTSIKGYKRAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSA  150 (1012)
Q Consensus        75 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~-~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~  150 (1012)
                      ..+........   ...........+.....+.+.|..+|++|++ ++|++|+ +|+||+++++.+.++...+.++   .
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~-~TlADi~l~~~l~~~~~~~~~~---~  186 (214)
T PRK15113        111 SDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFGE-WCIADTDLALMLNRLVLHGDEV---P  186 (214)
T ss_pred             hhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeCC-ccHHHHHHHHHHHHHHHcCCCC---C
Confidence            55543211000   0001111112244556788999999999974 5799996 9999999999998877665543   2


Q ss_pred             chhHHHHHHHhcCCccccccc
Q psy3752         151 SPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       151 P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      |+|.+|++||.+||+|++.+.
T Consensus       187 p~l~~~~~r~~~rp~~~~~~~  207 (214)
T PRK15113        187 ERLADYATFQWQRASVQRWLA  207 (214)
T ss_pred             HHHHHHHHHHhcCHHHHHHHH
Confidence            899999999999999998765

>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC)

Probab=99.87  E-value=8e-22  Score=213.85  Aligned_cols=193  Identities=19%  Similarity=0.241  Sum_probs=153.7

Q ss_pred             hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc---c-------C-----CCcchHHHHHHHHHHHHHHHHHHHHHhc
Q psy3752         616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q-------N-----IDRSTADYMGMLATIINSLALFDILNKS  680 (1012)
Q Consensus       616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~---~-------~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~  680 (1012)
                      ..+++++|+.+   |.++|||||||.+........   .       +     .++.+++.+.++. +..+..+++.|.++
T Consensus        13 ~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~-~~ln~~iv~~L~~~   88 (257)
T cd04251          13 LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVM-GLINKKIVARLHSL   88 (257)
T ss_pred             hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence            35789999887   889999999996554333221   1       2     1445556666655 55667788899999


Q ss_pred             CCceeEeehhchhh--------------------------hhhhcchHHHHHHhhCCCEEEEcCcC----C-CCCCccHH
Q psy3752         681 GIISHVMSAISIEK--------------------------FLESYIPLNAIKYLEEGKVVIFAGGI----G-NPFFTTDT  729 (1012)
Q Consensus       681 gi~a~~l~~~~~~~--------------------------~~~~~~~~~l~~~L~~g~VPVi~G~~----g-~~~~s~D~  729 (1012)
                      |++++++++.+.+.                          .+..++.+.+..+|++|.|||++++.    | .-++++|+
T Consensus        89 Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~  168 (257)
T cd04251          89 GVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDR  168 (257)
T ss_pred             CCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHH
Confidence            99999999977521                          13456889999999999999998742    1 12466999


Q ss_pred             HHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-----hhcCcccHHHHHHHHhCCC-cEEEEecC
Q psy3752         730 TAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSII  803 (1012)
Q Consensus       730 ~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-----~G~~v~~~~aa~~a~~~gi-~v~I~~g~  803 (1012)
                      +|+.+|..|+||+|+|+|||||||++       +++|++++.+++.+     +|+|..|+.++..+.++|+ +++|++|+
T Consensus       169 ~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~  241 (257)
T cd04251         169 AAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDAR  241 (257)
T ss_pred             HHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCC
Confidence            99999999999999999999999963       67889998877655     6999999999999999888 68899999


Q ss_pred             CchhHHHHhcCCCcceEE
Q psy3752         804 KSGALKRVIEGKNEGTLV  821 (1012)
Q Consensus       804 ~~~~i~~~l~Ge~~GT~I  821 (1012)
                      .|+++.++|.|+  ||.|
T Consensus       242 ~~~~l~~~l~g~--gT~i  257 (257)
T cd04251         242 ADSPISSALNGG--GTVI  257 (257)
T ss_pred             CccHHHHHHcCC--CcCC
Confidence            999999999985  9975

This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).

>TIGR00657 asp_kinases aspartate kinase

Probab=99.87  E-value=1.7e-21  Score=228.52  Aligned_cols=206  Identities=21%  Similarity=0.222  Sum_probs=160.9

Q ss_pred             cccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccccCCCc------------------------------
Q psy3752         610 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDR------------------------------  655 (1012)
Q Consensus       610 ~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~~~~~------------------------------  655 (1012)
                      .-+.+.++++++.|....+.|+++|+||||+    +.+..........+.                              
T Consensus        12 v~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~   91 (441)
T TIGR00657        12 VGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIPQAIAEELKRL   91 (441)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4567889999999998878899999999983    222111110000000                              


Q ss_pred             ---------chHHHHHHHHHHH--HHHHHHHHHHhcCCceeEeehhchhhh----------hhhcchHHHHHHhhCCCEE
Q psy3752         656 ---------STADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF----------LESYIPLNAIKYLEEGKVV  714 (1012)
Q Consensus       656 ---------~~~~~~~~~~~~~--~~~~l~~~l~~~gi~a~~l~~~~~~~~----------~~~~~~~~l~~~L~~g~VP  714 (1012)
                               .......+++.|+  ++.+++.+|+++|++++++++.+....          ....+...+..+++.|.||
T Consensus        92 ~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~vp  171 (441)
T TIGR00657        92 LDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIP  171 (441)
T ss_pred             HHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCEE
Confidence                     0112233445553  677899999999999999999875221          4556788999999999999


Q ss_pred             EEcCcCCC---CCC------ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcc
Q psy3752         715 IFAGGIGN---PFF------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIM  782 (1012)
Q Consensus       715 Vi~G~~g~---~~~------s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~  782 (1012)
                      |++|+.|.   +..      .+|++|+.+|.+|+|+.|++||||||||++||+.+|+++++++++++|+.+   .|++++
T Consensus       172 Vv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~  251 (441)
T TIGR00657       172 VVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVL  251 (441)
T ss_pred             EEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCccc
Confidence            99997542   222      279999999999999999999999999999999999999999999998876   799999


Q ss_pred             cHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         783 DSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       783 ~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      ++.|+.+|.++++|++|.|++.|         +..||+|.+.
T Consensus       252 ~~~a~~~~~~~~i~i~i~~~~~~---------~~~GT~I~~~  284 (441)
T TIGR00657       252 HPRTLEPAMRAKIPIVVKSTFNP---------EAPGTLIVAS  284 (441)
T ss_pred             CHHHHHHHHHcCCeEEEecCCCC---------CCCceEEEeC
Confidence            99999999999999999999987         3459999764

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

Probab=99.87  E-value=7.2e-22  Score=214.37  Aligned_cols=201  Identities=17%  Similarity=0.190  Sum_probs=150.8

Q ss_pred             hhhHhHHHHHHHHHh-CCCeEEEEEccchHhhhhcccc-------cCC---CcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3752         614 SIIKNIISEISEIVS-CGIELAIVIGGGNICRGISNKI-------QNI---DRSTADYMGMLATIINSLALFDILNKSGI  682 (1012)
Q Consensus       614 ~~i~~ia~~I~~l~~-~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~gi  682 (1012)
                      +.+++++++|+.+.. .|.++|||||||.+........       .++   +...++...++..+..+..+.+.+.++|+
T Consensus        14 ~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l~~~Gv   93 (252)
T cd04249          14 AALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQAIKAGL   93 (252)
T ss_pred             hhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHHHhCCC
Confidence            568899999998754 5789999999996543322221       111   33444444444344455566677779999


Q ss_pred             ceeEeehhchhh--------------hhhhcchHHHHHHhhCCCEEEEcCc----CC-CCCCccHHHHHHHHHhcCCceE
Q psy3752         683 ISHVMSAISIEK--------------FLESYIPLNAIKYLEEGKVVIFAGG----IG-NPFFTTDTTAALRAAEIKAEII  743 (1012)
Q Consensus       683 ~a~~l~~~~~~~--------------~~~~~~~~~l~~~L~~g~VPVi~G~----~g-~~~~s~D~~Aa~lA~~l~Ad~l  743 (1012)
                      +++++++.+.+.              .+..++.+.+..+++.|.|||+++.    .| ..++++|++|+++|..|+|| +
T Consensus        94 ~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~  172 (252)
T cd04249          94 KPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-L  172 (252)
T ss_pred             CceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-E
Confidence            999999986521              2445788999999999999999972    11 12466999999999999999 6


Q ss_pred             EeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHH-HhCCCcEEEEecCCchhHHHHhcCC
Q psy3752         744 LKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC-RDQKLPIRVFSIIKSGALKRVIEGK  815 (1012)
Q Consensus       744 iilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a-~~~gi~v~I~~g~~~~~i~~~l~Ge  815 (1012)
                      +++|||||||++||      ++|++++..++.+       +|+|..++.++..+ ...+++++|++|..|+++.+++.|+
T Consensus       173 i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~  246 (252)
T cd04249         173 VLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGE  246 (252)
T ss_pred             EEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCC
Confidence            78999999998765      5778888766544       57888888766555 5556899999999999999999999


Q ss_pred             CcceEE
Q psy3752         816 NEGTLV  821 (1012)
Q Consensus       816 ~~GT~I  821 (1012)
                      .+||+|
T Consensus       247 ~~GT~I  252 (252)
T cd04249         247 PVGTKI  252 (252)
T ss_pred             CCCcCC
Confidence            999986

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).

>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

Probab=99.86  E-value=7.5e-21  Score=207.25  Aligned_cols=153  Identities=19%  Similarity=0.220  Sum_probs=131.0

Q ss_pred             HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCCC-----
Q psy3752         661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-----  724 (1012)
Q Consensus       661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~-----  724 (1012)
                      ..+++.|  +++.+|+.+|++.|+++..+++.+++..         +.....+.+.+.++.+.|||++||.|.+.     
T Consensus       113 d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~t  192 (288)
T cd04245         113 DALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIK  192 (288)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEE
Confidence            3444444  4788899999999999999998876322         11225677888888899999999988542     


Q ss_pred             ----CccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcE
Q psy3752         725 ----FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI  797 (1012)
Q Consensus       725 ----~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v  797 (1012)
                          -++|+.|+.+|..|+||.+.+|||||||||+||+.+|+|+.+++++|+|+.+   .|.+++|+.|+.+|.++++|+
T Consensus       193 tLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi  272 (288)
T cd04245         193 TFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPI  272 (288)
T ss_pred             EcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcE
Confidence                2399999999999999999999999999999999999999999999999988   799999999999999999999


Q ss_pred             EEEecCCchhHHHHhcCCCcceEEE
Q psy3752         798 RVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       798 ~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      +|.|.++|+         ..||+|.
T Consensus       273 ~v~n~~~p~---------~~GT~I~  288 (288)
T cd04245         273 NIKNTNHPE---------APGTLIV  288 (288)
T ss_pred             EEeeCCCCC---------CCCceeC
Confidence            999999873         4699984

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.

>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

Probab=99.86  E-value=2.7e-21  Score=212.18  Aligned_cols=153  Identities=22%  Similarity=0.304  Sum_probs=126.4

Q ss_pred             HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhh---------hhhhcchHHHHHHhhC-CCEEEEcCcCCCC--CCc
Q psy3752         661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEK---------FLESYIPLNAIKYLEE-GKVVIFAGGIGNP--FFT  726 (1012)
Q Consensus       661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~---------~~~~~~~~~l~~~L~~-g~VPVi~G~~g~~--~~s  726 (1012)
                      ..+++.|  +++.+++.+|++.|+++..+++.++-.         +........+...+.. +.|||++||.|..  +.+
T Consensus       118 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~  197 (294)
T cd04257         118 AKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGET  197 (294)
T ss_pred             hhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCE
Confidence            3444444  478889999999999999999877511         0111224566666665 8999999988732  222


Q ss_pred             -------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752         727 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  796 (1012)
Q Consensus       727 -------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~  796 (1012)
                             +|++|+++|..++||.+++|||||||||+||+.+|+|++|+.++++|+.+   .|.++.++.|+.+|.++|+|
T Consensus       198 ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ip  277 (294)
T cd04257         198 TTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIP  277 (294)
T ss_pred             EECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCC
Confidence                   79999999999999999999999999999999999999999999999877   79999999999999999999


Q ss_pred             EEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         797 IRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       797 v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      ++|.|+++|         +..||+|+
T Consensus       278 i~i~~~~~p---------~~~GT~I~  294 (294)
T cd04257         278 ILIKNTFNP---------EAPGTLIS  294 (294)
T ss_pred             EEEeeCCCC---------CCCCCEeC
Confidence            999999987         35699984

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=99.86  E-value=3.2e-21  Score=204.21  Aligned_cols=170  Identities=23%  Similarity=0.432  Sum_probs=133.4

Q ss_pred             CceEEEEecCCC----CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKE   76 (1012)
Q Consensus         1 I~ye~~~Vd~~~----~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~   76 (1012)
                      |+|+.+.+++..    .+++|+++||+|+||+|++||.+|+||.+|++||+++|++..|+|.++.+++++++|+.++...
T Consensus        23 i~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~  102 (210)
T TIGR01262        23 IDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPADPIKRARVRALALLIACD  102 (210)
T ss_pred             CCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhcc
Confidence            689999998732    4688999999999999999999999999999999999998789999999999999997666543


Q ss_pred             HHHH----HHHhhhcc-ccccHHHHHHHHHHHHHHHHHHHhcccC--CCcccCCCcCHHHHHHHHHhhhhhhccccccCC
Q psy3752          77 IFIH----LYMLENER-NKTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKS  149 (1012)
Q Consensus        77 ~~~~----~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~Le~~L~~--~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~  149 (1012)
                      +...    ........ ........+...+.+.+.|..||++|++  ++||+|+++|+||+++++++.++...+.++ +.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~~~~~l~~~~~~~~~~-~~  181 (210)
T TIGR01262       103 IHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTLADLCLVPQVYNAERFGVDL-TP  181 (210)
T ss_pred             cChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCHHHHHHHHHHHHHHHcCCCc-cc
Confidence            3211    11111111 0111112233455688999999999985  469999999999999999998876555544 56


Q ss_pred             CchhHHHHHHHhcCCccccccc
Q psy3752         150 ASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       150 ~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ||+|.+|+++|.+||+|+++..
T Consensus       182 ~p~l~~~~~~~~~rp~~~~~~~  203 (210)
T TIGR01262       182 YPTLRRIAAALAALPAFQRAHP  203 (210)
T ss_pred             chHHHHHHHHHhcCHHHHHhCc
Confidence            9999999999999999998765

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>PRK10357 putative glutathione S-transferase; Provisional

Probab=99.86  E-value=6.9e-21  Score=200.35  Aligned_cols=170  Identities=24%  Similarity=0.345  Sum_probs=134.3

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFI   79 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~   79 (1012)
                      ++|+.+.+++...++++.++||.|+||+|+ ++|.+|+||.+|++||++++|++.|+|.++.+++++++|..+....+..
T Consensus        24 v~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~~~a~~~~~~~~~~~~~~~  103 (202)
T PRK10357         24 ITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDPLAALRVRQLEALADGIMDA  103 (202)
T ss_pred             CCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            689999999887888899999999999998 6889999999999999999988789999999999999886544333221


Q ss_pred             HH--HH-hhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccc--cccCCCchhH
Q psy3752          80 HL--YM-LENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGI--NLSKSASPLI  154 (1012)
Q Consensus        80 ~~--~~-~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~--~l~~~~P~L~  154 (1012)
                      ..  .. .............+.....+.+.|+.||++|.+++ |+|+++|+||+++++.+.++.....  .+...||+|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~  182 (202)
T PRK10357        104 ALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLV  182 (202)
T ss_pred             HHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHHHHHHHHHHhcccCcchhhcChHHH
Confidence            11  11 11111122233345566788999999999998888 9999999999999999987755322  2345699999


Q ss_pred             HHHHHHhcCCccccccc
Q psy3752         155 KYAERIFSRPSYMESLT  171 (1012)
Q Consensus       155 aw~~ri~~rp~~~~~lt  171 (1012)
                      +|++++.+||+|+++.+
T Consensus       183 ~~~~~i~~rp~~~~~~~  199 (202)
T PRK10357        183 KLVENLFQRESFARTEP  199 (202)
T ss_pred             HHHHHHhcChhhhhcCC
Confidence            99999999999998765

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=99.86  E-value=6.9e-21  Score=202.05  Aligned_cols=160  Identities=18%  Similarity=0.338  Sum_probs=125.6

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC---CCCCCCCHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY---PQLMSSDPLMRARARLMLLNFEKEI   77 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~---~~L~p~~~~era~v~~~~~~~~~~~   77 (1012)
                      |+|+.+.||+.++++||+++||.|+||+|+++|.+|+||.+|++||+++|++   +.+.|.++..++....+        
T Consensus        34 i~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~~~~~~~~~~l--------  105 (236)
T TIGR00862        34 VVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKHPESNTAGLDI--------  105 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHH--------
Confidence            6899999999999999999999999999999999999999999999999975   44666666555432211        


Q ss_pred             HHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc------------------CCCcccCCCcCHHHHHHHHHhhhh
Q psy3752          78 FIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL------------------KNKYMLGDEFSMLDVVIAPLLWRL  139 (1012)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~------------------~~~fL~Gd~~TlADi~l~~~L~~l  139 (1012)
                      +..+........   ....+...+.+.+.|..||++|.                  +++||.|+++|+|||+++|+++++
T Consensus       106 ~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~l~p~l~~l  182 (236)
T TIGR00862       106 FAKFSAYIKNSN---PEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCNLLPKLHIV  182 (236)
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhHHHHHHHHHH
Confidence            111111111111   11223344567888888998886                  579999999999999999999988


Q ss_pred             hhc-----cccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         140 DYY-----GINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       140 ~~~-----~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ...     ++++.+.||+|.+|++++.+||+|+.+++
T Consensus       183 ~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p  219 (236)
T TIGR00862       183 KVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCP  219 (236)
T ss_pred             HHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCC
Confidence            743     77777889999999999999999999887

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>PRK12352 putative carbamate kinase; Reviewed

Probab=99.86  E-value=5.7e-21  Score=209.63  Aligned_cols=225  Identities=17%  Similarity=0.154  Sum_probs=161.0

Q ss_pred             HHHHHHHhhhhhhhcCC-CCcc--cchhhHhHHHHHHHHHhCCCeEEEEEccchH---hhhhcccc---cCCCcchHHHH
Q psy3752         591 LAVLKAQQLGEALMKGD-AYNI--NSSIIKNIISEISEIVSCGIELAIVIGGGNI---CRGISNKI---QNIDRSTADYM  661 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~-~~~i--d~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~---~~~~~~~~---~~~~~~~~~~~  661 (1012)
                      ++|+|+  +|.++...+ ...+  ....+..++++|+.|...|+++|||||||..   .+......   .+++..+++.+
T Consensus         4 ~iVI~l--GGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~   81 (316)
T PRK12352          4 LVVVAI--GGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANC   81 (316)
T ss_pred             EEEEEE--ChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHH
Confidence            567776  666664321 1111  2357899999999999999999999999833   22222222   24455666655


Q ss_pred             HHHHHHH----HHHHHHHHHHhcCCce-------eEeehhchhh------------------------------------
Q psy3752         662 GMLATII----NSLALFDILNKSGIIS-------HVMSAISIEK------------------------------------  694 (1012)
Q Consensus       662 ~~~~~~~----~~~~l~~~l~~~gi~a-------~~l~~~~~~~------------------------------------  694 (1012)
                      .....+.    ....|+..|..+|..+       +.+++.|.+.                                    
T Consensus        82 v~~~~g~i~~~i~~~L~~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~  161 (316)
T PRK12352         82 VADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY  161 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCe
Confidence            5555543    4555666688777443       4445332211                                    


Q ss_pred             --------hhhhcchHHHHHHhhCCCEEEEcCcCCCCC--------------CccHHHHHHHHHhcCCceEEeeeccccc
Q psy3752         695 --------FLESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGI  752 (1012)
Q Consensus       695 --------~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~--------------~s~D~~Aa~lA~~l~Ad~liilTDVdGV  752 (1012)
                              .++.++.+.+..+|++|+|||.+|+.|.|.              +.+|++|+.+|.+|+||+|+|+|||+||
T Consensus       162 rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV  241 (316)
T PRK12352        162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV  241 (316)
T ss_pred             EEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhh
Confidence                    145678899999999999966665544432              3489999999999999999999999999


Q ss_pred             cccCCcCCcCcccccccCHHHHHh--------hhcCcccHHHHHHHHhCCC-cEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         753 YNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       753 y~~dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      |+++|+  |++++|++++..++.+        .|+|.+|+.||..+.+.|+ +++|++   ++.+.++|.|+ .||+|..
T Consensus       242 ~~d~~~--~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~  315 (316)
T PRK12352        242 CIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK  315 (316)
T ss_pred             ccCCCC--CCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence            988764  7788999999877654        3789999998866666555 788886   77799999998 8999964

>PRK08373 aspartate kinase; Validated

Probab=99.86  E-value=7.6e-21  Score=211.14  Aligned_cols=155  Identities=24%  Similarity=0.296  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhh------------hhhcchHHHHHHhhCCCEEEEcCcCCCC-C-
Q psy3752         659 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNP-F-  724 (1012)
Q Consensus       659 ~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~------------~~~~~~~~l~~~L~~g~VPVi~G~~g~~-~-  724 (1012)
                      |.....+...++.+++.+|...|+++..++++++-..            ....+.+.+..+++.|.|||++|+.|+. + 
T Consensus       103 D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~  182 (341)
T PRK08373        103 DYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNGF  182 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCCe
Confidence            4444444444788899999999999999998765110            1123457788889999999999988742 2 


Q ss_pred             C------ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCC
Q psy3752         725 F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL  795 (1012)
Q Consensus       725 ~------s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi  795 (1012)
                      .      ++|++|+.+|..|+|+.++++|||||||++||+.+|+|++|++++++|+.+   .|++++++.|+++|.+ ++
T Consensus       183 ~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~I  261 (341)
T PRK08373        183 RATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-KI  261 (341)
T ss_pred             EEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-CC
Confidence            1      279999999999999999999999999999999999999999999999987   7999999999999999 99


Q ss_pred             cEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         796 PIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       796 ~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      |++|.|.++|          ..||+|+..
T Consensus       262 pi~v~~t~~~----------~~GT~I~~~  280 (341)
T PRK08373        262 PIIFGRTRDW----------RMGTLVSNE  280 (341)
T ss_pred             cEEEecCCCC----------CCCcEEecC
Confidence            9999998765          259999754

>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

Probab=99.85  E-value=1.4e-20  Score=206.32  Aligned_cols=153  Identities=25%  Similarity=0.318  Sum_probs=126.2

Q ss_pred             HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh-------hhhc--chHHHHHHhhC-CCEEEEcCcCCC--CCCc
Q psy3752         661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF-------LESY--IPLNAIKYLEE-GKVVIFAGGIGN--PFFT  726 (1012)
Q Consensus       661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~-------~~~~--~~~~l~~~L~~-g~VPVi~G~~g~--~~~s  726 (1012)
                      ..+++.|  +++.+++.+|.+.|+++..+++.++-..       ....  ....+..++.. +.|||++||.|.  ++.+
T Consensus       117 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~  196 (293)
T cd04243         117 AEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGET  196 (293)
T ss_pred             hHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCE
Confidence            3444444  4788899999999999999998654110       0011  13467777776 899999998863  2222


Q ss_pred             -------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752         727 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  796 (1012)
Q Consensus       727 -------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~  796 (1012)
                             +|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+   .|.++.++.|+.+|.++|+|
T Consensus       197 ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~  276 (293)
T cd04243         197 TTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIP  276 (293)
T ss_pred             EEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCc
Confidence                   69999999999999999999999999999999999999999999999887   79999999999999999999


Q ss_pred             EEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         797 IRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       797 v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      ++|.|+++|         +..||+|+
T Consensus       277 i~i~~~~~p---------~~~GT~I~  293 (293)
T cd04243         277 IFIKNTFNP---------EAPGTLIS  293 (293)
T ss_pred             EEEecCCCC---------CCCCCEeC
Confidence            999999988         35799984

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-

>PRK11752 putative S-transferase; Provisional

Probab=99.85  E-value=1.4e-20  Score=205.58  Aligned_cols=169  Identities=19%  Similarity=0.255  Sum_probs=128.8

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeC----CEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVER----DLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNF   73 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~dd----g~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~   73 (1012)
                      ++||.+.|++..   .+++|+++||.|+||+|+++    |.+|+||.||++||+++|+  +|+|.++.+|+++++|+.+.
T Consensus        73 l~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~--~L~P~~~~era~v~~wl~~~  150 (264)
T PRK11752         73 AEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFG--AFLPKDLAARTETLNWLFWQ  150 (264)
T ss_pred             CceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcC--CcCCCCHHHHHHHHHHHHHH
Confidence            479999999865   46899999999999999974    4799999999999999997  49999999999999997655


Q ss_pred             HHHH--HH-HHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc------cc
Q psy3752          74 EKEI--FI-HLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY------GI  144 (1012)
Q Consensus        74 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~------~~  144 (1012)
                      ....  .. .+...............+....++.+.|+.||++|++++||+|++||+|||++++++.++...      ..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~  230 (264)
T PRK11752        151 QGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEF  230 (264)
T ss_pred             hhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHhhccccccccc
Confidence            4332  11 111111111111122334556678899999999999899999999999999999988665321      11


Q ss_pred             cccCCCchhHHHHHHHhcCCccccccc
Q psy3752         145 NLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       145 ~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ...+.||+|.+|+++|.+||+|++.+.
T Consensus       231 ~~~~~~P~L~~w~~rv~~rPs~k~~~~  257 (264)
T PRK11752        231 LDVGSYKHVQRWAKEIAERPAVKRGRI  257 (264)
T ss_pred             cCcccCHHHHHHHHHHHhCHHHHHHHh
Confidence            113569999999999999999998765

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=99.84  E-value=4.2e-20  Score=201.74  Aligned_cols=157  Identities=25%  Similarity=0.315  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhh---------hhhhcch---HHHHHHhhCCCEEEEcCcCCCC-
Q psy3752         657 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIEK---------FLESYIP---LNAIKYLEEGKVVIFAGGIGNP-  723 (1012)
Q Consensus       657 ~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~---------~~~~~~~---~~l~~~L~~g~VPVi~G~~g~~-  723 (1012)
                      ..+.+...+..+++.+++.+|++.|+++..+++.++-.         +......   ......+..+.|||++||.|.+ 
T Consensus       112 ~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~  191 (292)
T cd04258         112 SRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTE  191 (292)
T ss_pred             hHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccCC
Confidence            34555555555688999999999999999999877510         0000011   1222234567999999998853 


Q ss_pred             --CCc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHh
Q psy3752         724 --FFT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRD  792 (1012)
Q Consensus       724 --~~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~  792 (1012)
                        ..+      +|++|+.+|..++|+.+++||||||||++||+.+|+|++++.++++|+.+   .|.++.++.|..++.+
T Consensus       192 ~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~  271 (292)
T cd04258         192 KGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIR  271 (292)
T ss_pred             CCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHH
Confidence              222      79999999999999999999999999999999999999999999999987   7999999999999999


Q ss_pred             CCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         793 QKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       793 ~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      +++|++|.|.++|         +..||+|+
T Consensus       272 ~~ipi~i~~~~~p---------~~~GT~I~  292 (292)
T cd04258         272 KNIPVFVGSSKDP---------EAGGTLIT  292 (292)
T ss_pred             cCCcEEEEeCCCC---------CCCCceeC
Confidence            9999999999987         35799984

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.

>PRK12354 carbamate kinase; Reviewed

Probab=99.84  E-value=8.8e-21  Score=205.32  Aligned_cols=224  Identities=21%  Similarity=0.174  Sum_probs=161.4

Q ss_pred             HHHHHHhhhhhhhcC-CCCccc--chhhHhHHHHHHHHHhCCCeEEEEEccchH-h--hhhcccccCCCcchHHHHHHHH
Q psy3752         592 AVLKAQQLGEALMKG-DAYNIN--SSIIKNIISEISEIVSCGIELAIVIGGGNI-C--RGISNKIQNIDRSTADYMGMLA  665 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~-~~~~id--~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~-~--~~~~~~~~~~~~~~~~~~~~~~  665 (1012)
                      +|+++  +|.++... .+....  .+.++..|++|+.+.+ |+++||+||+|.+ .  +.........++.+++.++...
T Consensus         3 iVial--GGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~s   79 (307)
T PRK12354          3 IVVAL--GGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAET   79 (307)
T ss_pred             EEEEe--ccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhcccc
Confidence            34554  66766653 334444  3488999999999988 9999999999854 1  1111222222567889999899


Q ss_pred             HHHHHHHHHHHHHhcC----CceeEee----hh---------chh----------------h-----------------h
Q psy3752         666 TIINSLALFDILNKSG----IISHVMS----AI---------SIE----------------K-----------------F  695 (1012)
Q Consensus       666 ~~~~~~~l~~~l~~~g----i~a~~l~----~~---------~~~----------------~-----------------~  695 (1012)
                      +++.++.++..|...=    +..+...    ..         .++                .                 .
T Consensus        80 qg~iGy~l~q~l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P  159 (307)
T PRK12354         80 EGMIGYMLEQELGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRP  159 (307)
T ss_pred             cchHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCC
Confidence            9998888888754322    2221111    00         000                0                 0


Q ss_pred             hhhcchHHHHHHhhCCCEEEEcCcCCCCC--------------CccHHHHHHHHHhcCCceEEeeeccccccccCCcCCc
Q psy3752         696 LESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL  761 (1012)
Q Consensus       696 ~~~~~~~~l~~~L~~g~VPVi~G~~g~~~--------------~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~  761 (1012)
                      ...++.+.+..+|++|+|||.+|+.|.|.              +++|++|+.||.+++||.|+|+|||||||++++  .|
T Consensus       160 ~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p  237 (307)
T PRK12354        160 KRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KP  237 (307)
T ss_pred             cceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CC
Confidence            11357889999999999988887766542              347999999999999999999999999999865  47


Q ss_pred             CcccccccCHHHHHh----hhcCcccHHHHHH-HHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         762 SAIIYKKITFDEVIS----KKLEIMDSTAFSF-CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       762 ~a~~i~~i~~~e~~~----~G~~v~~~~aa~~-a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      ++++|++++.+++.+    .|+|.+|+.|+.. +.+.+.+++|.   .++.+.++|.|+ .||+|.+.
T Consensus       238 ~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~  301 (307)
T PRK12354        238 TQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPE  301 (307)
T ss_pred             CCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecC
Confidence            899999999988765    6999999998855 55556577774   356789999997 79999864

>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

Probab=99.84  E-value=1.9e-20  Score=205.22  Aligned_cols=153  Identities=23%  Similarity=0.327  Sum_probs=123.3

Q ss_pred             HHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhhhh-------hcc---hHHHHHHhh--CCCEEEEcCcCCCCC---
Q psy3752         662 GMLATI--INSLALFDILNKSGIISHVMSAISIEKFLE-------SYI---PLNAIKYLE--EGKVVIFAGGIGNPF---  724 (1012)
Q Consensus       662 ~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~-------~~~---~~~l~~~L~--~g~VPVi~G~~g~~~---  724 (1012)
                      .+++.|  +++.+++.+|++.|+++..+++.++-....       .+.   .+.+...+.  .+.|||++||+|...   
T Consensus       127 ~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~  206 (306)
T cd04247         127 LVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGGL  206 (306)
T ss_pred             HHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCCC
Confidence            444444  478889999999999999999877611100       110   112222222  578999999988422   


Q ss_pred             Cc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCC
Q psy3752         725 FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL  795 (1012)
Q Consensus       725 ~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi  795 (1012)
                      .+      +|++|+++|..|+|+.+++||||||||++||+.+|+|++|++++++|+.+   .|+++.|+.++.+|.+++|
T Consensus       207 ~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~I  286 (306)
T cd04247         207 LSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARI  286 (306)
T ss_pred             eEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcCC
Confidence            22      99999999999999999999999999999999999999999999999987   6999999999999999999


Q ss_pred             cEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         796 PIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       796 ~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      |++|.|.++|         +..||+|.+
T Consensus       287 pi~i~nt~~P---------~~~GT~I~~  305 (306)
T cd04247         287 PIRIKNVENP---------RGEGTVIYP  305 (306)
T ss_pred             cEEEecCCCC---------CCCCcEEcC
Confidence            9999999988         356999975

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.

>PRK09411 carbamate kinase; Reviewed

Probab=99.84  E-value=3.6e-20  Score=198.55  Aligned_cols=216  Identities=21%  Similarity=0.228  Sum_probs=164.7

Q ss_pred             hhhhhhcC-CCCcccch--hhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhcccccCCCcchHHHHHHHHHHHHHH
Q psy3752         599 LGEALMKG-DAYNINSS--IIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGMLATIINSL  671 (1012)
Q Consensus       599 ~g~~~~~~-~~~~id~~--~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1012)
                      +|.++... ........  .++..|+.|+.+.+. |++||+||.|    +.+++.... ...++.++|.++..++|+.++
T Consensus         9 GGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~-~~~~~~pld~~~a~sqG~iGy   86 (297)
T PRK09411          9 GGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAW-KEVEPYPLDVLVAESQGMIGY   86 (297)
T ss_pred             CchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhh-cCCCCCCchhhhhhcccHHHH
Confidence            56666542 22333334  788899999999887 9999999986    444432222 234778999999999999999


Q ss_pred             HHHHHHHhcCCceeEee--------hhch------------------------------------------hhhhhhcch
Q psy3752         672 ALFDILNKSGIISHVMS--------AISI------------------------------------------EKFLESYIP  701 (1012)
Q Consensus       672 ~l~~~l~~~gi~a~~l~--------~~~~------------------------------------------~~~~~~~~~  701 (1012)
                      +|+..|...++..-..+        +.|-                                          ......++.
T Consensus        87 ~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P~~iVe~  166 (297)
T PRK09411         87 MLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDS  166 (297)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCCcceECH
Confidence            99999998875431111        1110                                          000245678


Q ss_pred             HHHHHHhhCCCEEEEcCcCCCC----------CCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCH
Q psy3752         702 LNAIKYLEEGKVVIFAGGIGNP----------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF  771 (1012)
Q Consensus       702 ~~l~~~L~~g~VPVi~G~~g~~----------~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~  771 (1012)
                      +.+..++++|.|||.+|+.|.|          ++++|.+|+.||..|+||+|+|+|||||||++++  .|++++|++++.
T Consensus       167 ~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it~  244 (297)
T PRK09411        167 EAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHATP  244 (297)
T ss_pred             HHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcCH
Confidence            8999999999998888765544          2449999999999999999999999999999764  478999999999


Q ss_pred             HHHHh----hhcCcccHHHH-HHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         772 DEVIS----KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       772 ~e~~~----~G~~v~~~~aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      +++..    .|+|.+|+.|+ +++...|.+++|.+   ++.+.++|.|+ .||+|.
T Consensus       245 ~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~  296 (297)
T PRK09411        245 DELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS  296 (297)
T ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence            88754    69999999987 66666778888864   56788999998 699985

>PLN02378 glutathione S-transferase DHAR1

Probab=99.84  E-value=2.3e-20  Score=197.89  Aligned_cols=161  Identities=22%  Similarity=0.401  Sum_probs=124.0

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH   80 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~   80 (1012)
                      +||+.+.||+..++++|+++||.|+||+|++||.+|+||.+|++||+++||+..+.  ++.++++++..+.   ..+ ..
T Consensus        35 l~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~--~~~~~a~i~~~~~---~~~-~~  108 (213)
T PLN02378         35 LTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK--TPAEFASVGSNIF---GTF-GT  108 (213)
T ss_pred             CCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHH---HHH-HH
Confidence            68999999998899999999999999999999999999999999999999876663  5677777655321   111 11


Q ss_pred             HHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHHHHhhhhhhc-----cccccCCCchh
Q psy3752          81 LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWRLDYY-----GINLSKSASPL  153 (1012)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~~~L~~l~~~-----~~~l~~~~P~L  153 (1012)
                      +.   ......     +.....+.+.|..+|++|.  +++|++|+++|+||+++++++.++...     +++..+.||+|
T Consensus       109 ~~---~~~~~~-----~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~~~~~~~p~l  180 (213)
T PLN02378        109 FL---KSKDSN-----DGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHV  180 (213)
T ss_pred             HH---hcCChh-----hHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCCCchhHhHHH
Confidence            11   111111     2233567788999999997  578999999999999999998776432     22334679999


Q ss_pred             HHHHHHHhcCCccccccchhhhh
Q psy3752         154 IKYAERIFSRPSYMESLTPAEKI  176 (1012)
Q Consensus       154 ~aw~~ri~~rp~~~~~lt~~~~l  176 (1012)
                      .+|+++|.+||+|++++. .+.+
T Consensus       181 ~~w~~~~~~rpa~~~~~~-~~~~  202 (213)
T PLN02378        181 HNYMKTLFSLDSFEKTKT-EEKY  202 (213)
T ss_pred             HHHHHHHhcCCCeecccC-ChHH
Confidence            999999999999998877 4433

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

Probab=99.84  E-value=1.2e-20  Score=196.82  Aligned_cols=180  Identities=21%  Similarity=0.258  Sum_probs=141.6

Q ss_pred             hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcc--cccCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchh
Q psy3752         616 IKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIE  693 (1012)
Q Consensus       616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~  693 (1012)
                      +..+.+.+..+  .|++++||.|||++++.+..  ...++++..+|+++++++.+++.+|+..+...+            
T Consensus        12 ~~~~~~~l~~~--~~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~------------   77 (203)
T cd04240          12 AVRLLRWLKTL--SGGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLV------------   77 (203)
T ss_pred             HHHHHHHHHhc--cCCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCccc------------
Confidence            44555555544  28899999999988544433  345789999999999999999998764332221            


Q ss_pred             hhhhhcchHHHHHHhhCCCEEEEcCc--------CC-CCCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcc
Q psy3752         694 KFLESYIPLNAIKYLEEGKVVIFAGG--------IG-NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAI  764 (1012)
Q Consensus       694 ~~~~~~~~~~l~~~L~~g~VPVi~G~--------~g-~~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~  764 (1012)
                          ..+...+..++..|.|||+.+.        .+ .-++|+|++|+++|..++|++|+++|||||||++|      ++
T Consensus        78 ----~~~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~  147 (203)
T cd04240          78 ----ARTLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GK  147 (203)
T ss_pred             ----cCCHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------Cc
Confidence                1234567778999999999873        11 12378999999999999999999999999999864      78


Q ss_pred             cccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCC-CcceEE
Q psy3752         765 IYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLV  821 (1012)
Q Consensus       765 ~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge-~~GT~I  821 (1012)
                      ++++++..++..  ..+++..+++.+.++|++++|+||..|+++.+++.|+ .+||.|
T Consensus       148 ~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I  203 (203)
T cd04240         148 LVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI  203 (203)
T ss_pred             CccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence            999999887643  4445666788899999999999999999999999998 789975

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.

>PLN02551 aspartokinase

Probab=99.84  E-value=2.1e-19  Score=211.05  Aligned_cols=155  Identities=21%  Similarity=0.256  Sum_probs=127.6

Q ss_pred             HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHh-----hCCCEEEEcCcCCCC-
Q psy3752         661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYL-----EEGKVVIFAGGIGNP-  723 (1012)
Q Consensus       661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L-----~~g~VPVi~G~~g~~-  723 (1012)
                      ..+++.|  +++.+|+.+|++.|+++..+++.+++.+         +.......+...+     ..+.|||++||+|.. 
T Consensus       166 d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~  245 (521)
T PLN02551        166 DYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGW  245 (521)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCC
Confidence            4444455  4788899999999999999999877311         2122333343433     356899999998853 


Q ss_pred             --C-Cc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHH
Q psy3752         724 --F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR  791 (1012)
Q Consensus       724 --~-~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~  791 (1012)
                        + .+      +|++|+.+|.+|+|+.+.|||||||||++||+..|+|+.+++++|+|+.+   .|++++++.|..+|.
T Consensus       246 ~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~  325 (521)
T PLN02551        246 KTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAR  325 (521)
T ss_pred             CCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHH
Confidence              2 22      89999999999999999999999999999999999999999999999988   799999999999999


Q ss_pred             hCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         792 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       792 ~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      +++||++|.|.++|         +..||+|+..
T Consensus       326 ~~~Ipi~vknt~~p---------~~~GT~I~~~  349 (521)
T PLN02551        326 EGDIPVRVKNSYNP---------TAPGTLITKT  349 (521)
T ss_pred             HCCceEEEEecCCC---------CCCCcEEecc
Confidence            99999999999887         3569999754

>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families

Probab=99.84  E-value=4.3e-21  Score=207.85  Aligned_cols=185  Identities=21%  Similarity=0.283  Sum_probs=140.5

Q ss_pred             hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCc-----------chHHHHHHHHHHHHHH-----HHHHHHHh
Q psy3752         616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDR-----------STADYMGMLATIINSL-----ALFDILNK  679 (1012)
Q Consensus       616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-----~l~~~l~~  679 (1012)
                      +.+++++|+.+.+.|+++|||||||.......... ++.+           ..............+.     .+.+.+..
T Consensus        19 ~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~   97 (242)
T PF00696_consen   19 LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKY-GIEPKFVDGSRVTDIETGLIITMAAAAELNRDALLDEIVSAGER   97 (242)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHC-THTTSEETHHCHBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhc-cCCcccchhhhhhhhhhhHHHHHHHhhccccchhHHHHHHhhhh
Confidence            99999999999999999999999986665544442 1111           1122222222222223     56667888


Q ss_pred             cCCceeEeehhchhhhh-----hhcchHHHHHHhhCCCEEEEcCcCC-----C----CCCccHHHHHHHHHhcCCceEEe
Q psy3752         680 SGIISHVMSAISIEKFL-----ESYIPLNAIKYLEEGKVVIFAGGIG-----N----PFFTTDTTAALRAAEIKAEIILK  745 (1012)
Q Consensus       680 ~gi~a~~l~~~~~~~~~-----~~~~~~~l~~~L~~g~VPVi~G~~g-----~----~~~s~D~~Aa~lA~~l~Ad~lii  745 (1012)
                      ++..++.+.+.+.+...     ..++...+..+|++|.|||++|+.+     .    .+.++|++|+.||.+|+|+.|++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~  177 (242)
T PF00696_consen   98 LGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIF  177 (242)
T ss_dssp             CTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEE
T ss_pred             hhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhh
Confidence            89888887777653221     2457889999999999999998542     1    34569999999999999999999


Q ss_pred             eeccccccccCCcCCcCcccccccCHHHHHh--------hhcC-cccHHHHHHHHhCCCcEEEEe
Q psy3752         746 ATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLE-IMDSTAFSFCRDQKLPIRVFS  801 (1012)
Q Consensus       746 lTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~--------~G~~-v~~~~aa~~a~~~gi~v~I~~  801 (1012)
                      +|||||||++||+.+|+++++++++++|+.+        .|+| +.+..|.+.+++++++++|+|
T Consensus       178 ~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n  242 (242)
T PF00696_consen  178 LTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN  242 (242)
T ss_dssp             EESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             hhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence            9999999999999999999999999998876        3555 455567777788899999986

In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....

>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative

Probab=99.83  E-value=4.9e-20  Score=203.55  Aligned_cols=142  Identities=20%  Similarity=0.256  Sum_probs=117.4

Q ss_pred             HHHHHHhcCCceeEeehhchhhh------------hhhcchHHHHHHhhCCCEEEEcCcCCCCC--C------ccHHHHH
Q psy3752         673 LFDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNPF--F------TTDTTAA  732 (1012)
Q Consensus       673 l~~~l~~~gi~a~~l~~~~~~~~------------~~~~~~~~l~~~L~~g~VPVi~G~~g~~~--~------s~D~~Aa  732 (1012)
                      +++.|-..|+++..++++++-..            ....+.+.+..+++.|.|||++|+.|+..  .      ++|++|+
T Consensus       107 lSa~Lla~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa  186 (327)
T TIGR02078       107 LSAVIFAEGINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAV  186 (327)
T ss_pred             HHHHHHHccCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHH
Confidence            44444455899999888765110            12335567788899999999999877431  1      3799999


Q ss_pred             HHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHH
Q psy3752         733 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK  809 (1012)
Q Consensus       733 ~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~  809 (1012)
                      .+|..|+||.+++||||||||++||+.+|+|++|++++++|+.+   .|++++|+.|+++|.++|+|++|.|.++|    
T Consensus       187 ~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~----  262 (327)
T TIGR02078       187 ALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDW----  262 (327)
T ss_pred             HHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCc----
Confidence            99999999999999999999999999999999999999999876   68889999999999999999999999875    


Q ss_pred             HHhcCCCcceEEEEe
Q psy3752         810 RVIEGKNEGTLVYEI  824 (1012)
Q Consensus       810 ~~l~Ge~~GT~I~~~  824 (1012)
                           + .||+|+..
T Consensus       263 -----~-~GT~I~~~  271 (327)
T TIGR02078       263 -----R-MGTLISNR  271 (327)
T ss_pred             -----C-CCcEEecC
Confidence                 2 59999754

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.

>TIGR00761 argB acetylglutamate kinase

Probab=99.82  E-value=2.9e-20  Score=199.38  Aligned_cols=178  Identities=21%  Similarity=0.213  Sum_probs=138.6

Q ss_pred             hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc-------cCC---CcchHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy3752         616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QNI---DRSTADYMGMLATIINSLALFDILNKSGIISH  685 (1012)
Q Consensus       616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~  685 (1012)
                      +.+++++|+.+++.|.++|||||||..........       .+.   ++..++...++..+..+..+.+.|.++|++++
T Consensus        15 ~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~~~L~~~G~~a~   94 (231)
T TIGR00761        15 LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELVALLNKHGINAI   94 (231)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHHHHHHhCCCCcc
Confidence            88999999999999999999999985443322211       111   33344554555555566777789999999999


Q ss_pred             Eeehhchhhh---------------hhhcchHHHHHHhhCCCEEEEcCcCCC------CCCccHHHHHHHHHhcCCceEE
Q psy3752         686 VMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAGGIGN------PFFTTDTTAALRAAEIKAEIIL  744 (1012)
Q Consensus       686 ~l~~~~~~~~---------------~~~~~~~~l~~~L~~g~VPVi~G~~g~------~~~s~D~~Aa~lA~~l~Ad~li  744 (1012)
                      ++++.+.+.+               +..++.+.+..++++|.|||++|. |.      .++++|++|+.+|.+|+||+|+
T Consensus        95 ~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~-~~~~~g~~~~l~sD~~A~~lA~~l~A~~li  173 (231)
T TIGR00761        95 GLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL-ALTAEGQALNVNADTAAGALAAALGAEKLV  173 (231)
T ss_pred             cccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCC-ccCCCCcEEEeCHHHHHHHHHHHcCCCEEE
Confidence            9988764221               345678999999999999999982 32      2356999999999999999999


Q ss_pred             eeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhCCCcEEE
Q psy3752         745 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRV  799 (1012)
Q Consensus       745 ilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~gi~v~I  799 (1012)
                      ++|||||||++||+     ++|+.++.+++.+       +|+|..|+.++..|.+.|++.+.
T Consensus       174 ~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~  230 (231)
T TIGR00761       174 LLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVH  230 (231)
T ss_pred             EEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEE
Confidence            99999999999873     6889998877644       58999999999999999987554

This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.

>PRK09084 aspartate kinase III; Validated

Probab=99.82  E-value=1.8e-19  Score=210.15  Aligned_cols=157  Identities=22%  Similarity=0.263  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHhcCCceeEeehhchhhh-------------hhhcchHHHHHHhhCCCEEEEcCcCCC
Q psy3752         658 ADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF-------------LESYIPLNAIKYLEEGKVVIFAGGIGN  722 (1012)
Q Consensus       658 ~~~~~~~~~~~--~~~~l~~~l~~~gi~a~~l~~~~~~~~-------------~~~~~~~~l~~~L~~g~VPVi~G~~g~  722 (1012)
                      .....+++.|+  ++.+++.+|.+.|+++..+++.++-..             ........+.++++.+ |||++||+|.
T Consensus       107 ~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~  185 (448)
T PRK09084        107 ALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGS  185 (448)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeec
Confidence            34455555554  688899999999999999998765110             0111113455566778 9999998773


Q ss_pred             C--C-C------ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHH
Q psy3752         723 P--F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFC  790 (1012)
Q Consensus       723 ~--~-~------s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a  790 (1012)
                      .  + .      .+|++|+++|..++||.+++|||||||||+||+.+|+|+++++++|+|+.+   .|+++.++.+..++
T Consensus       186 ~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~  265 (448)
T PRK09084        186 DEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPA  265 (448)
T ss_pred             CCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHH
Confidence            2  1 1      289999999999999999999999999999999999999999999999987   79999999999999


Q ss_pred             HhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         791 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       791 ~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      .++++|++|.|+++|+         ..||+|...
T Consensus       266 ~~~~i~i~i~~~~~~~---------~~GT~I~~~  290 (448)
T PRK09084        266 VRSNIPVFVGSSKDPE---------AGGTWICND  290 (448)
T ss_pred             HHcCCcEEEEeCCCCC---------CCceEEecC
Confidence            9999999999999873         469999653

>PRK09034 aspartate kinase; Reviewed

Probab=99.82  E-value=2e-19  Score=210.42  Aligned_cols=261  Identities=17%  Similarity=0.172  Sum_probs=176.6

Q ss_pred             HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh---------hhhcchHHHHHHhhCCCEEEEcCcCCCC--C-Cc
Q psy3752         661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP--F-FT  726 (1012)
Q Consensus       661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~~L~~g~VPVi~G~~g~~--~-~s  726 (1012)
                      ..+++.|  +++.+++.+|++.|+++..+++.+++.+         +.......+...+..+.|||++||+|..  + .+
T Consensus       113 d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~t  192 (454)
T PRK09034        113 DAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQIV  192 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCEE
Confidence            4445555  4788899999999999999998877322         1122455666666678899999998732  1 22


Q ss_pred             ------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcE
Q psy3752         727 ------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI  797 (1012)
Q Consensus       727 ------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v  797 (1012)
                            +|+.|+.+|.+|+||.+.+||||||||++||+.+|+|+.+++++|+|+.+   .|.+++++.|+.+|.++++|+
T Consensus       193 tlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi  272 (454)
T PRK09034        193 TFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPI  272 (454)
T ss_pred             ecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCE
Confidence                  99999999999999999999999999999999999999999999999988   799999999999999999999


Q ss_pred             EEEecCCchhHHHHhcCCCcceEEEEeeeh----hh------hhh-hhhhH-HHHHHHHHHHHHHHHhhhcCCCCccccc
Q psy3752         798 RVFSIIKSGALKRVIEGKNEGTLVYEIYIM----II------SDI-KKNTK-QKMLNTIKILKENLKKVRTGRANIGMLD  865 (1012)
Q Consensus       798 ~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~~----~~------~~i-~~~~~-~~m~~~~~~~~~~l~~~~~gr~~p~~l~  865 (1012)
                      +|.|.++|         +..||+|+.....    .+      +++ +-.+. ..|......+.+=|.-+...+.++.++.
T Consensus       273 ~v~~~~~p---------~~~GT~I~~~~~~~~~~~Vk~It~~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~  343 (454)
T PRK09034        273 NIKNTNNP---------EDPGTLIVPDRDNKNKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP  343 (454)
T ss_pred             EEEcCCCC---------CCCccEEEeccccCccccceEEEecCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc
Confidence            99999887         3469999754211    01      111 00111 1244444555555555555667777663


Q ss_pred             c----eEEEecCccc------c----cc---ceeeEeecCCceEEEee------cCcccHHHHHHHHHhcCCCCCcc---
Q psy3752         866 N----IQVKYHEHLT------K----LL---KIANITLFNSHTISIQP------FEKEMSSIIKKAINEANLGLNPT---  919 (1012)
Q Consensus       866 ~----i~V~~~g~~~------~----l~---~~a~i~~~~~~~l~i~~------~d~~~~~~i~~ai~~s~l~~~p~---  919 (1012)
                      .    +.+-......      .    |.   ....|++.+. .-.|+.      -.+.....|..++.+.+.++.-.   
T Consensus       344 ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~-va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~  422 (454)
T PRK09034        344 SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHD-LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQG  422 (454)
T ss_pred             CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCC-EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence            3    4443332211      0    00   1123444332 122222      23667788888887777665322   


Q ss_pred             cCCCeEEEeCCC
Q psy3752         920 IQGNIIYVSIPP  931 (1012)
Q Consensus       920 ~~~~~i~v~iP~  931 (1012)
                      ..+..|.+.+|.
T Consensus       423 ~Se~~Is~vV~~  434 (454)
T PRK09034        423 SSEISIMFGVKN  434 (454)
T ss_pred             CCcceEEEEEcH
Confidence            233566677764

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=99.82  E-value=1.3e-19  Score=196.90  Aligned_cols=157  Identities=20%  Similarity=0.456  Sum_probs=124.0

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH   80 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~   80 (1012)
                      |||+.+.|++.++++||+++||.|+||+|+++|.+|+||.+|++||+++||++.|.  ++.+++.++.++..   .+. .
T Consensus        88 i~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~era~i~~~l~~---~~~-~  161 (265)
T PLN02817         88 LPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPPEKASVGSKIFS---TFI-G  161 (265)
T ss_pred             CCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHH---HHH-H
Confidence            68999999998899999999999999999999999999999999999999987664  57788888765321   111 1


Q ss_pred             HHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc-CCCcccCCCcCHHHHHHHHHhhhhhhc-----cccccCCCchhH
Q psy3752          81 LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAPLLWRLDYY-----GINLSKSASPLI  154 (1012)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~-~~~fL~Gd~~TlADi~l~~~L~~l~~~-----~~~l~~~~P~L~  154 (1012)
                      ++   ......     +...+.+.+.|..||++|. +++||+|+++|+||+++++.+.++...     ++++.+.||+|.
T Consensus       162 ~~---~~~~~~-----~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~~i~~~~P~L~  233 (265)
T PLN02817        162 FL---KSKDPG-----DGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLPFVK  233 (265)
T ss_pred             Hh---ccCCcc-----hHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccCHHHH
Confidence            11   111111     1123456778899999997 479999999999999999998776532     334456799999


Q ss_pred             HHHHHHhcCCccccccc
Q psy3752         155 KYAERIFSRPSYMESLT  171 (1012)
Q Consensus       155 aw~~ri~~rp~~~~~lt  171 (1012)
                      +|+++|.++|+|+.+..
T Consensus       234 ~w~~ri~~rps~~~~~~  250 (265)
T PLN02817        234 SYMKNIFSMESFVKTRA  250 (265)
T ss_pred             HHHHHHhcchhHhhcCC
Confidence            99999999999999876

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts

Probab=99.81  E-value=1.1e-19  Score=199.02  Aligned_cols=214  Identities=18%  Similarity=0.164  Sum_probs=159.4

Q ss_pred             HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcc---ccc----C---CCcchHH
Q psy3752         590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTAD  659 (1012)
Q Consensus       590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~---~~~----~---~~~~~~~  659 (1012)
                      +++|+|+  +|+++.        .+.+++++.+|+.+.+.|+++|||||||.....+..   ...    |   .++..++
T Consensus        19 ~~~VIKl--GG~ai~--------~~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~   88 (280)
T cd04237          19 KTFVIAF--GGEAVA--------HPNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALE   88 (280)
T ss_pred             CEEEEEE--ChHHhc--------CchHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHH
Confidence            3578885  454432        135688999999999999999999999955443322   211    2   2455566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCceeEeeh-----hch------------------hhhhhhcchHHHHHHhhCCCEEEE
Q psy3752         660 YMGMLATIINSLALFDILNKSGIISHVMSA-----ISI------------------EKFLESYIPLNAIKYLEEGKVVIF  716 (1012)
Q Consensus       660 ~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~-----~~~------------------~~~~~~~~~~~l~~~L~~g~VPVi  716 (1012)
                      ...++ .+..+..+.+.|+. |++++++++     .+.                  ...+..++.+.+..+|++|.|||+
T Consensus        89 ~~~~~-~g~v~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~  166 (280)
T cd04237          89 CVKEA-AGAVRLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL  166 (280)
T ss_pred             HHHHH-HHHHHHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEE
Confidence            66666 47778888888855 887764432     111                  011345788999999999999999


Q ss_pred             cCcC----CC-CCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh--------hhcCccc
Q psy3752         717 AGGI----GN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMD  783 (1012)
Q Consensus       717 ~G~~----g~-~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~  783 (1012)
                      ++..    |. -++++|.+|+.||.+|+|++|+|+|||||||++      ++++|++++.+++.+        +|+|.+|
T Consensus       167 ~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~K  240 (280)
T cd04237         167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL  240 (280)
T ss_pred             CCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHH
Confidence            8721    11 146799999999999999999999999999974      357888888766544        4899999


Q ss_pred             HHHHHHHHhCCC-cEEEEecCCchhHHHHhc-CCCcceEE
Q psy3752         784 STAFSFCRDQKL-PIRVFSIIKSGALKRVIE-GKNEGTLV  821 (1012)
Q Consensus       784 ~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~-Ge~~GT~I  821 (1012)
                      +.++..+.+.|+ +++|+++..|+.+...|. .+..||+|
T Consensus       241 v~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i  280 (280)
T cd04237         241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI  280 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence            999999999999 899999999999887655 45679975

Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=99.79  E-value=8.9e-18  Score=208.77  Aligned_cols=155  Identities=16%  Similarity=0.209  Sum_probs=125.7

Q ss_pred             HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhh---------hhhhcchHHHHHHh-hCCCEEEEcCcCCCCC---C
Q psy3752         661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEK---------FLESYIPLNAIKYL-EEGKVVIFAGGIGNPF---F  725 (1012)
Q Consensus       661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~---------~~~~~~~~~l~~~L-~~g~VPVi~G~~g~~~---~  725 (1012)
                      ..+++.|  .++.+|+.+|++.|+++..+++.++-.         +........+.+.+ +.+.|||++||+|...   .
T Consensus       120 d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~  199 (819)
T PRK09436        120 AAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGEL  199 (819)
T ss_pred             hheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCE
Confidence            3334444  468889999999999999998866511         01112234555554 4689999999877321   1


Q ss_pred             c------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752         726 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  796 (1012)
Q Consensus       726 s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~  796 (1012)
                      +      +|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+   .|.+++|+.|+.+|.++|+|
T Consensus       200 ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ip  279 (819)
T PRK09436        200 VTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIP  279 (819)
T ss_pred             EEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCce
Confidence            1      89999999999999999999999999999999999999999999999987   69999999999999999999


Q ss_pred             EEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         797 IRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       797 v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      ++|.|+++|+         ..||+|+..
T Consensus       280 i~i~n~~~p~---------~~GT~I~~~  298 (819)
T PRK09436        280 CLIKNTFNPQ---------APGTLIGAE  298 (819)
T ss_pred             EEEccCCCCC---------CCceEEEec
Confidence            9999999873         468888653

>PRK05925 aspartate kinase; Provisional

Probab=99.79  E-value=1.5e-18  Score=200.55  Aligned_cols=155  Identities=23%  Similarity=0.218  Sum_probs=124.2

Q ss_pred             HHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhhh-----hhcc----hHHHHH-HhhCCCEEEEcCcCCCC--C-C
Q psy3752         661 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKFL-----ESYI----PLNAIK-YLEEGKVVIFAGGIGNP--F-F  725 (1012)
Q Consensus       661 ~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~~-----~~~~----~~~l~~-~L~~g~VPVi~G~~g~~--~-~  725 (1012)
                      ..+++.|  .++.+++.+|+..|+++..+++.++-...     ...+    ...+.. .++.+.|||++||+|..  + .
T Consensus       103 d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~  182 (440)
T PRK05925        103 ARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGKT  182 (440)
T ss_pred             hhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCCE
Confidence            4444455  47888999999999999999987651100     0111    112222 34567899999998732  1 2


Q ss_pred             c------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752         726 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  796 (1012)
Q Consensus       726 s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~  796 (1012)
                      +      ||++|+++|.+++||.+++|||||||||+||+.+|+|++|++++++|+.+   .|..+.++.++++|.++|+|
T Consensus       183 ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ip  262 (440)
T PRK05925        183 TVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIP  262 (440)
T ss_pred             EEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCc
Confidence            2      99999999999999999999999999999999999999999999999876   68999999999999999999


Q ss_pred             EEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         797 IRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       797 v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      ++|.|+++|+         ..||+|.+.
T Consensus       263 i~I~~~~~p~---------~~GT~i~~~  281 (440)
T PRK05925        263 IFVTSTFDVT---------KGGTWIYAS  281 (440)
T ss_pred             EEEecCCCCC---------CCccEEecC
Confidence            9999999884         369999763

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP)

Probab=99.79  E-value=6.7e-19  Score=190.03  Aligned_cols=196  Identities=15%  Similarity=0.154  Sum_probs=146.6

Q ss_pred             hHhHHHHHHHHHhCCCeEEEEEccchHhhhhccc---cc----C---CCcchHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy3752         616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH  685 (1012)
Q Consensus       616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~---~~----~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~  685 (1012)
                      +.+++++|+.|+..|.++|||||||.+.......   ..    +   .++..++...++.. ..+..+++.|.++|++++
T Consensus        14 l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~-~vn~~iv~~l~~~g~~a~   92 (248)
T cd04252          14 LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFL-EENLKLVEALERNGARAR   92 (248)
T ss_pred             HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcc
Confidence            7899999999998999999999999655544332   21    1   14455566666554 567778888999999999


Q ss_pred             Eeehhchh------------hhhhhcchHHHHHHhhCCCEEEEcCc----CCC-CCCccHHHHHHHHHhcCCceEEeeec
Q psy3752         686 VMSAISIE------------KFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATK  748 (1012)
Q Consensus       686 ~l~~~~~~------------~~~~~~~~~~l~~~L~~g~VPVi~G~----~g~-~~~s~D~~Aa~lA~~l~Ad~liilTD  748 (1012)
                      ++++..+.            ..+..++.+.+..+|+.|+|||+++.    .|. -++++|.+|+.+|..|+|++|+|+||
T Consensus        93 ~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd  172 (248)
T cd04252          93 PITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE  172 (248)
T ss_pred             cccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence            98864221            12456789999999999999999981    121 24679999999999999999999999


Q ss_pred             cccccccCCcCCcCcccccccCHH-HH---Hh----hhcCcccHHHHHHHHhC---CCcEEEEecCCchhHHHHhcC-CC
Q psy3752         749 VDGIYNSDPNKCLSAIIYKKITFD-EV---IS----KKLEIMDSTAFSFCRDQ---KLPIRVFSIIKSGALKRVIEG-KN  816 (1012)
Q Consensus       749 VdGVy~~dP~~~~~a~~i~~i~~~-e~---~~----~G~~v~~~~aa~~a~~~---gi~v~I~~g~~~~~i~~~l~G-e~  816 (1012)
                      |+|||+++      .++|++++.. +.   .+    +|+|..|+.++..+.+.   ...++|++   ++.+...|.+ +.
T Consensus       173 v~GV~~~~------g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g  243 (248)
T cd04252         173 TGGLLDGT------GKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSG  243 (248)
T ss_pred             CcccCCCC------CCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCC
Confidence            99999752      5678888753 32   22    69999999988888776   34577776   4667665544 45


Q ss_pred             cceEE
Q psy3752         817 EGTLV  821 (1012)
Q Consensus       817 ~GT~I  821 (1012)
                      .||.|
T Consensus       244 ~GT~i  248 (248)
T cd04252         244 AGTLI  248 (248)
T ss_pred             CCccC
Confidence            89975

The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th

>KOG0867|consensus

Probab=99.79  E-value=4.4e-19  Score=188.85  Aligned_cols=170  Identities=23%  Similarity=0.347  Sum_probs=136.0

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC-CCC-CCCCCHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP-YPQ-LMSSDPLMRARARLMLLNFEK   75 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p-~~~-L~p~~~~era~v~~~~~~~~~   75 (1012)
                      ++||.+.|++..   .+|+|+++||.|+||+|+|+|..++||.||+.||+++|. ... |+|.++.+|+.+++|+.+...
T Consensus        26 l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~~~l~p~~~~~ra~v~~~l~~~~~  105 (226)
T KOG0867|consen   26 LEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLGGILLPKDLKERAIVDQWLEFENG  105 (226)
T ss_pred             CceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCCcccCCcCHHHHHHHHHHHHhhhc
Confidence            578899888765   779999999999999999999999999999999999996 333 999999999999999755554


Q ss_pred             HHHHHHH-H---hh-hccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhh--hhccccccC
Q psy3752          76 EIFIHLY-M---LE-NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRL--DYYGINLSK  148 (1012)
Q Consensus        76 ~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l--~~~~~~l~~  148 (1012)
                      .+..... .   .+ .................+.+.++.+|.+|.++.|++|+++|+||+.+.+.+..+  .........
T Consensus       106 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~tlADl~~~~~~~~~~~~~~~~~~~~  185 (226)
T KOG0867|consen  106 VLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQLTLADLSLASTLSQFQGKFATEKDFE  185 (226)
T ss_pred             ccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcccHHHHHHhhHHHHHhHhhhhhhhhh
Confidence            4433321 0   11 122222444456777889999999999999999999999999999999998876  333233456


Q ss_pred             CCchhHHHHHHHhcCCcccccc
Q psy3752         149 SASPLIKYAERIFSRPSYMESL  170 (1012)
Q Consensus       149 ~~P~L~aw~~ri~~rp~~~~~l  170 (1012)
                      +||++.+|++++.++|++.+..
T Consensus       186 ~~p~v~~W~~~~~~~P~~~e~~  207 (226)
T KOG0867|consen  186 KYPKVARWYERIQKRPAYEEAN  207 (226)
T ss_pred             hChHHHHHHHHHHhCccHHHHH
Confidence            7999999999999999987644

>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]

Probab=99.79  E-value=2.6e-18  Score=178.20  Aligned_cols=219  Identities=23%  Similarity=0.279  Sum_probs=167.4

Q ss_pred             hhhhhhcCCC---CcccchhhHhHHHHHHHHHhCCCeEEEEEccc----hHhhhhccc--ccCCCcchHHHHHHHHHHHH
Q psy3752         599 LGEALMKGDA---YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNK--IQNIDRSTADYMGMLATIIN  669 (1012)
Q Consensus       599 ~g~~~~~~~~---~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  669 (1012)
                      +|.++...+.   .....+.++..+++|+.+.+.|+++||.||.|    ..+++....  ..+.++.++|.++++++++.
T Consensus         8 GGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~AmsQG~I   87 (312)
T COG0549           8 GGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLVAMSQGMI   87 (312)
T ss_pred             cchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHhHhhhhHH
Confidence            5666665433   33446778899999999999999999999986    444433321  23567789999999999999


Q ss_pred             HHHHHHH----HHhcCCc---eeEeeh-----hch-------------------------------------------hh
Q psy3752         670 SLALFDI----LNKSGII---SHVMSA-----ISI-------------------------------------------EK  694 (1012)
Q Consensus       670 ~~~l~~~----l~~~gi~---a~~l~~-----~~~-------------------------------------------~~  694 (1012)
                      +++|+.+    |...|+.   +..++-     .|-                                           ..
T Consensus        88 Gy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~RRVVpSP~  167 (312)
T COG0549          88 GYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYRRVVPSPK  167 (312)
T ss_pred             HHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCeeEecCCCC
Confidence            9998887    4555653   111211     110                                           00


Q ss_pred             hhhhcchHHHHHHhhCCCEEEEcCcCCCCCC-------------ccHHHHHHHHHhcCCceEEeeeccccccccCCcCCc
Q psy3752         695 FLESYIPLNAIKYLEEGKVVIFAGGIGNPFF-------------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL  761 (1012)
Q Consensus       695 ~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~-------------s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~  761 (1012)
                      ..+.+..+.+..++++|.++|.+|+.|.|.+             ..|..|+.||..++||.|+|+||||+||-...+  |
T Consensus       168 P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p  245 (312)
T COG0549         168 PVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--P  245 (312)
T ss_pred             CccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--c
Confidence            1334467789999999999999998887642             279999999999999999999999999999987  7


Q ss_pred             CcccccccCHHHHHh--------hhcCcccHHH-HHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         762 SAIIYKKITFDEVIS--------KKLEIMDSTA-FSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       762 ~a~~i~~i~~~e~~~--------~G~~v~~~~a-a~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      +.+.+++++.+|+.+        -|+|.+|+.| +.++...|-+.+|.+   .+++.++|.|+ .||.|.+
T Consensus       246 ~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~  312 (312)
T COG0549         246 NQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP  312 (312)
T ss_pred             cchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence            888999999999654        5899999985 477788788888876   45688999998 5999864

>PRK05279 N-acetylglutamate synthase; Validated

Probab=99.79  E-value=2.1e-18  Score=202.51  Aligned_cols=217  Identities=18%  Similarity=0.162  Sum_probs=162.8

Q ss_pred             HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccc---cc----C---CCcchHH
Q psy3752         590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ----N---IDRSTAD  659 (1012)
Q Consensus       590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~---~~----~---~~~~~~~  659 (1012)
                      +++|+|+  +|+++.        ...+++++.+|+.+...|.++|||||||.........   ..    |   .+..+++
T Consensus        26 ~~~VIk~--GG~~l~--------~~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~   95 (441)
T PRK05279         26 KTFVIML--GGEAIA--------HGNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALE   95 (441)
T ss_pred             CEEEEEE--Cchhcc--------ChhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHH
Confidence            3577885  444332        1236789999999999999999999999554433222   11    2   2455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCceeEeehhch-----h------------------hhhhhcchHHHHHHhhCCCEEEE
Q psy3752         660 YMGMLATIINSLALFDILNKSGIISHVMSAISI-----E------------------KFLESYIPLNAIKYLEEGKVVIF  716 (1012)
Q Consensus       660 ~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~-----~------------------~~~~~~~~~~l~~~L~~g~VPVi  716 (1012)
                      ...++ .+..+..+++.|+. |++++++++.++     .                  ..+..++.+.+..+|++|+|||+
T Consensus        96 ~~~~~-~g~v~~~l~~~l~~-g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~  173 (441)
T PRK05279         96 CVKQA-AGELRLDIEARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLL  173 (441)
T ss_pred             HHHHH-HHHHHHHHHHHHhc-cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEE
Confidence            66666 46778888888855 888877544321     0                  11345678999999999999999


Q ss_pred             cCc----CCC-CCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh----------hhcCc
Q psy3752         717 AGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEI  781 (1012)
Q Consensus       717 ~G~----~g~-~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~----------~G~~v  781 (1012)
                      ++.    .|. -++++|++|+.||..|+|++|+|+|||||||++      ++++|++++..++.+          +|+|.
T Consensus       174 ~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~  247 (441)
T PRK05279        174 SPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA  247 (441)
T ss_pred             CCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence            762    121 246799999999999999999999999999953      367888888755532          59999


Q ss_pred             ccHHHHHHHHhCCC-cEEEEecCCchhHHHHhcCC-CcceEEEEe
Q psy3752         782 MDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGK-NEGTLVYEI  824 (1012)
Q Consensus       782 ~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge-~~GT~I~~~  824 (1012)
                      .|+.++..+.+.|+ +++|+++..|+++...|.++ ..||.|++.
T Consensus       248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~  292 (441)
T PRK05279        248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME  292 (441)
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence            99999888888899 89999999999999988765 479999975

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=99.79  E-value=1.4e-18  Score=213.90  Aligned_cols=154  Identities=17%  Similarity=0.198  Sum_probs=127.9

Q ss_pred             HHHHHHHH--HHHHHHHHHHhcCCceeEeehhchhh--------hhhhcchHHHHHHhhC--CCEEEEcCcCCCCC---C
Q psy3752         661 MGMLATII--NSLALFDILNKSGIISHVMSAISIEK--------FLESYIPLNAIKYLEE--GKVVIFAGGIGNPF---F  725 (1012)
Q Consensus       661 ~~~~~~~~--~~~~l~~~l~~~gi~a~~l~~~~~~~--------~~~~~~~~~l~~~L~~--g~VPVi~G~~g~~~---~  725 (1012)
                      ..+++.|+  ++.+|+.+|+..|+++..+++.++-.        +........+.+.+..  +.|||++||+|...   .
T Consensus       123 d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~  202 (810)
T PRK09466        123 AEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGET  202 (810)
T ss_pred             hheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCE
Confidence            44445554  68889999999999999999877511        1112234567777654  38999999987421   2


Q ss_pred             c------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752         726 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  796 (1012)
Q Consensus       726 s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~  796 (1012)
                      +      +|++|+.+|..|+|+.+.|||||||||++||+..|+|++|++++|+|+.+   .|.+++|+.+.++|.+++||
T Consensus       203 ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ip  282 (810)
T PRK09466        203 VLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDID  282 (810)
T ss_pred             EEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCe
Confidence            2      89999999999999999999999999999999999999999999999988   79999999999999999999


Q ss_pred             EEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         797 IRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       797 v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      ++|.|.++|         +..||+|..
T Consensus       283 i~V~ntf~p---------~~~GT~I~~  300 (810)
T PRK09466        283 LQLRCSYQP---------EQGSTRIER  300 (810)
T ss_pred             EEEecCCCC---------CCCceEEec
Confidence            999999987         346999975

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals

Probab=99.78  E-value=2.3e-18  Score=185.37  Aligned_cols=195  Identities=11%  Similarity=0.073  Sum_probs=149.4

Q ss_pred             ccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehh
Q psy3752         611 INSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI  690 (1012)
Q Consensus       611 id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~  690 (1012)
                      .+++.+..+++.|+.|...|.++|||||||........ .     .......++.. ..+..|+..|+.+|++++++++.
T Consensus        48 ~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~-~-----~~~~~~~~v~~-~~n~~Lv~~L~~~G~~A~gl~g~  120 (271)
T cd04236          48 RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS-D-----LELQAARSRLV-KDCKTLVEALQANSAAAHPLFSG  120 (271)
T ss_pred             cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc-C-----CcchheehhHH-HHHHHHHHHHHhCCCCeeeecCc
Confidence            35678899999999999999999999999965543333 1     11111222333 45677888999999999999886


Q ss_pred             ch------------hhhhhhcchHHHHHHhhCCCEEEEcCc----CC-CCCCccHHHHHHHHHhcCCceEEeeecccccc
Q psy3752         691 SI------------EKFLESYIPLNAIKYLEEGKVVIFAGG----IG-NPFFTTDTTAALRAAEIKAEIILKATKVDGIY  753 (1012)
Q Consensus       691 ~~------------~~~~~~~~~~~l~~~L~~g~VPVi~G~----~g-~~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy  753 (1012)
                      ..            ...++.++.+.+..+|++|.|||+++.    .| .-++++|++|+.+|.+|+|++|+++|||+|||
T Consensus       121 ~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~  200 (271)
T cd04236         121 ESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLR  200 (271)
T ss_pred             cceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceE
Confidence            31            011456899999999999999999981    11 12466999999999999999999999999999


Q ss_pred             ccCCcCCcCcccccccCH-HHHHh-------hhcC---cccHHHHHHHHhCCCcEEEEecCCchhHH-HHhcCCCcceEE
Q psy3752         754 NSDPNKCLSAIIYKKITF-DEVIS-------KKLE---IMDSTAFSFCRDQKLPIRVFSIIKSGALK-RVIEGKNEGTLV  821 (1012)
Q Consensus       754 ~~dP~~~~~a~~i~~i~~-~e~~~-------~G~~---v~~~~aa~~a~~~gi~v~I~~g~~~~~i~-~~l~Ge~~GT~I  821 (1012)
                      +.+      .++|++++. +|+.+       .|||   ++++.++.-+...|+.|+|++   |+.+. .++..++.||+|
T Consensus       201 ~~~------g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~  271 (271)
T cd04236         201 DQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF  271 (271)
T ss_pred             CCC------CCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence            742      567888884 55543       6889   888889989999999999987   55544 566667789975

Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).

>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase

Probab=99.78  E-value=4.8e-18  Score=198.49  Aligned_cols=201  Identities=18%  Similarity=0.192  Sum_probs=153.4

Q ss_pred             hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcc---ccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy3752         616 IKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH  685 (1012)
Q Consensus       616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~---~~~----~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~  685 (1012)
                      +..++++|+.|...|.++|||||||.....+..   ...    |   .++.+++...++ ++..+..|++.|... ++++
T Consensus        34 ~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~-~g~vn~~l~~~l~~~-~~~~  111 (429)
T TIGR01890        34 LGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLEQAQQA-AGTLRLAIEARLSMS-LSNT  111 (429)
T ss_pred             HHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHH-hChHHHHHHHHHHhc-CCcc
Confidence            458999999999999999999999954443322   221    2   266777888775 777788888888776 4433


Q ss_pred             E-----eehhchh----------------h--hhhhcchHHHHHHhhCCCEEEEcC-cC---C-CCCCccHHHHHHHHHh
Q psy3752         686 V-----MSAISIE----------------K--FLESYIPLNAIKYLEEGKVVIFAG-GI---G-NPFFTTDTTAALRAAE  737 (1012)
Q Consensus       686 ~-----l~~~~~~----------------~--~~~~~~~~~l~~~L~~g~VPVi~G-~~---g-~~~~s~D~~Aa~lA~~  737 (1012)
                      +     +++.+.+                .  .+..++.+.+..+|++|+|||+++ +.   | .-++++|++|+.||.+
T Consensus       112 ~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~a  191 (429)
T TIGR01890       112 PMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAIS  191 (429)
T ss_pred             cccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHH
Confidence            3     3443321                1  145678999999999999999987 21   2 2357799999999999


Q ss_pred             cCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh------hhcCcccHHHHHHHHhCCC-cEEEEecCCchhHHH
Q psy3752         738 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKR  810 (1012)
Q Consensus       738 l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~  810 (1012)
                      |+|++|+++|||+|||++      +.++|++++.+++.+      .|+|..++.++..|.+.|+ +++|++|..|+++..
T Consensus       192 l~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~  265 (429)
T TIGR01890       192 LKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQ  265 (429)
T ss_pred             cCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHH
Confidence            999999999999999964      256888888766544      3445899999999999996 799999999999888


Q ss_pred             Hh-cCCCcceEEEEe
Q psy3752         811 VI-EGKNEGTLVYEI  824 (1012)
Q Consensus       811 ~l-~Ge~~GT~I~~~  824 (1012)
                      .| ..+..||+|...
T Consensus       266 el~~~~g~GT~i~~d  280 (429)
T TIGR01890       266 ELFTRDGIGTSISKE  280 (429)
T ss_pred             HHhcCCCCcceEecc
Confidence            76 456689999875

This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=99.75  E-value=2.7e-18  Score=215.94  Aligned_cols=217  Identities=20%  Similarity=0.227  Sum_probs=157.5

Q ss_pred             HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEcc--c--hHhhhhcccc---------------
Q psy3752         590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG--G--NICRGISNKI---------------  650 (1012)
Q Consensus       590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGG--G--~~~~~~~~~~---------------  650 (1012)
                      .++|.|+  +|+++       -+.+.++++++.|..-.+.|.++++|+|+  |  +.+.......               
T Consensus         8 ~~~V~KF--GGtSv-------~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~   78 (861)
T PRK08961          8 RWVVLKF--GGTSV-------SRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSASRVAAIRQR   78 (861)
T ss_pred             CcEEEEE--Ccccc-------CCHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3457786  55543       46677999999888766678899999997  4  2221111000               


Q ss_pred             -----c--CCCc------------------------chHHHHHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhhh-
Q psy3752         651 -----Q--NIDR------------------------STADYMGMLATI--INSLALFDILNKSGIISHVMSAISIEKFL-  696 (1012)
Q Consensus       651 -----~--~~~~------------------------~~~~~~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~~-  696 (1012)
                           .  ..+.                        .+.....+++.|  +++.+|+.+|++.|+++..+++.++.... 
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~  158 (861)
T PRK08961         79 HRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALP  158 (861)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecC
Confidence                 0  0000                        111122333444  36888999999999999999987652110 


Q ss_pred             ----------------hhcchHHHHHHhhCC-CEEEEcCcCCCC--C-Cc------cHHHHHHHHHhcCCceEEeeeccc
Q psy3752         697 ----------------ESYIPLNAIKYLEEG-KVVIFAGGIGNP--F-FT------TDTTAALRAAEIKAEIILKATKVD  750 (1012)
Q Consensus       697 ----------------~~~~~~~l~~~L~~g-~VPVi~G~~g~~--~-~s------~D~~Aa~lA~~l~Ad~liilTDVd  750 (1012)
                                      ...+...+..++..+ .|||++||+|..  + .+      +|++|+.+|..++||.++++||||
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~  238 (861)
T PRK08961        159 QPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVP  238 (861)
T ss_pred             ccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence                            011223444555555 599999998742  2 11      999999999999999999999999


Q ss_pred             cccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         751 GIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       751 GVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      ||||+||+.+|+|++|++++++|+.+   .|++++|+.|+++|.++|||++|.|+++|         +..||+|.+.
T Consensus       239 Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~---------~~~gT~I~~~  306 (861)
T PRK08961        239 GMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERP---------DLSGTSIDGD  306 (861)
T ss_pred             ccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCC---------CCCccEEeCC
Confidence            99999999999999999999999876   79999999999999999999999999887         3458888643

>PTZ00057 glutathione s-transferase; Provisional

Probab=99.75  E-value=1.1e-17  Score=176.33  Aligned_cols=160  Identities=19%  Similarity=0.300  Sum_probs=113.8

Q ss_pred             CceEEEEecCCCCCchhh--------hcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIF--------RMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLN   72 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~--------~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~   72 (1012)
                      +||+.+.++. .. ++|.        +.||+|+||+|++||.+|+||.||++||+++||   +.+.+..+++.++.++..
T Consensus        28 i~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~~---~~~~~~~~~~~~~~~~~~  102 (205)
T PTZ00057         28 IEYTDKRFGE-NG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKYK---ICGESELNEFYADMIFCG  102 (205)
T ss_pred             CCeEEEeccc-cc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHH
Confidence            5788887743 22 2333        489999999999999999999999999999997   456666655555544332


Q ss_pred             HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCC--CcccCCCcCHHHHHHHHHhhhhhh-ccccccCC
Q psy3752          73 FEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN--KYMLGDEFSMLDVVIAPLLWRLDY-YGINLSKS  149 (1012)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~--~fL~Gd~~TlADi~l~~~L~~l~~-~~~~l~~~  149 (1012)
                      +. .+..........    .....+.....+.+.|..||++|+++  +||+|+++|+||+++++.+.++.. .+.++ +.
T Consensus       103 ~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~~~~~~~l-~~  176 (205)
T PTZ00057        103 VQ-DIHYKFNNTNLF----KQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYDDIETKYPNSL-KN  176 (205)
T ss_pred             HH-HHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHHHHHHHhChhhh-cc
Confidence            22 221111110000    01111334567889999999999753  899999999999999999887653 33333 56


Q ss_pred             CchhHHHHHHHhcCCccccccc
Q psy3752         150 ASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       150 ~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ||+|.+|++|+.+||+|++.+.
T Consensus       177 ~P~l~~~~~r~~~~P~~k~y~~  198 (205)
T PTZ00057        177 FPLLKAHNEFISNLPNIKNYIS  198 (205)
T ss_pred             ChhHHHHHHHHHhChHHHHHHH
Confidence            9999999999999999998765

>PRK09181 aspartate kinase; Validated

Probab=99.73  E-value=1.6e-16  Score=185.10  Aligned_cols=159  Identities=12%  Similarity=0.137  Sum_probs=125.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhh----CCCEEEEcCcCCCCC--Cc--
Q psy3752         655 RSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT--  726 (1012)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~----~g~VPVi~G~~g~~~--~s--  726 (1012)
                      +...|.....+...++.+|+.+|+..|+++..++...............+...+.    .+.|||++||.|.+.  .+  
T Consensus       136 ~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTL  215 (475)
T PRK09181        136 LTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTF  215 (475)
T ss_pred             hhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEec
Confidence            3344444444444478889999999999999865432211111112456666665    478999999876432  22  


Q ss_pred             ----cHHHHHHHHHhcCCceEEeeeccccccccCCcCC--cCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcE
Q psy3752         727 ----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI  797 (1012)
Q Consensus       727 ----~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~--~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v  797 (1012)
                          +|++|+.+|.+|+||.+.|||||+ ||++||+..  |+|+.|++++|+|+.+   .|.+++++.++++|.+++||+
T Consensus       216 GRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi  294 (475)
T PRK09181        216 DRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPL  294 (475)
T ss_pred             CCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeE
Confidence                899999999999999999999997 999999999  6999999999999988   799999999999999999999


Q ss_pred             EEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         798 RVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       798 ~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      +|.|.++|         +..||+|++
T Consensus       295 ~V~nt~~p---------~~~GT~I~~  311 (475)
T PRK09181        295 RIKNTFEP---------EHPGTLITK  311 (475)
T ss_pred             EEecCCCC---------CCCCeEEec
Confidence            99999887         357999974

>PRK10387 glutaredoxin 2; Provisional

Probab=99.71  E-value=8e-17  Score=170.53  Aligned_cols=160  Identities=21%  Similarity=0.171  Sum_probs=113.6

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEE-EeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFI   79 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL-~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~   79 (1012)
                      |||+.+.++...... ..+.||.|+||+| .+||.+|+||.||++||+++||++.+.+   .+++.+++|+.+....+..
T Consensus        24 i~y~~~~~~~~~~~~-~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~   99 (210)
T PRK10387         24 IPVELIVLANDDEAT-PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLTG---KRSPAIEEWLRKVFGYLNK   99 (210)
T ss_pred             CCeEEEEcCCCchhh-HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCCC---cccHHHHHHHHHHHHHhhc
Confidence            689998887554222 2678999999999 5889999999999999999998654532   2466777776555433322


Q ss_pred             HHHHhhh----cc--ccccH------------------HHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHH
Q psy3752          80 HLYMLEN----ER--NKTSI------------------KGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL  135 (1012)
Q Consensus        80 ~~~~~~~----~~--~~~~~------------------~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~  135 (1012)
                      .+.....    +.  .....                  ...+.....+.+.|+.+|.+|++ +||+|+++|+||++++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~l~G~~~s~ADi~l~~~  178 (210)
T PRK10387        100 LLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLIVK-PNAVNGELSTDDIHLFPI  178 (210)
T ss_pred             chhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHhcC-ccccCCCCCHHHHHHHHH
Confidence            2111000    00  00000                  00134567788999999999986 999999999999999999


Q ss_pred             hhhhhhccccccCCCchhHHHHHHHhcCCccc
Q psy3752         136 LWRLDYYGINLSKSASPLIKYAERIFSRPSYM  167 (1012)
Q Consensus       136 L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~  167 (1012)
                      +.|+...+. . +.+|+|.+|++||.+||++.
T Consensus       179 l~~~~~~~~-~-~~~p~l~~w~~r~~~r~~~~  208 (210)
T PRK10387        179 LRNLTLVKG-I-EWPPRVADYRDNMSKKTQVP  208 (210)
T ss_pred             HhcceeecC-C-CCCHHHHHHHHHHHHHhCCC
Confidence            999875422 1 23699999999999999874

>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

Probab=99.70  E-value=1.4e-16  Score=171.95  Aligned_cols=159  Identities=13%  Similarity=0.123  Sum_probs=123.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhh----CCCEEEEcCcCCCCC--Cc-
Q psy3752         654 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT-  726 (1012)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~----~g~VPVi~G~~g~~~--~s-  726 (1012)
                      .+...|.....+...++.+++.+|++.|+++..++...............+...+.    .+.|||++||.|+..  .+ 
T Consensus       129 ~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itT  208 (304)
T cd04248         129 LLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMRE  208 (304)
T ss_pred             CHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEE
Confidence            34455555555555578889999999999998854432211000112344444443    578999999865321  22 


Q ss_pred             -----cHHHHHHHHHhcCCceEEeeeccccccccCCcCC--cCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCc
Q psy3752         727 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  796 (1012)
Q Consensus       727 -----~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~--~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~  796 (1012)
                           +|++|+.+|.+++|+.+.|||||+ ||++||+.+  ++|+.|++++|+|+.+   .|++++++.|+++|.+++||
T Consensus       209 LGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IP  287 (304)
T cd04248         209 FDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP  287 (304)
T ss_pred             cCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCe
Confidence                 999999999999999999999996 999999999  6899999999999987   79999999999999999999


Q ss_pred             EEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         797 IRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       797 v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      ++|.|.++|         +..||+|+
T Consensus       288 i~Vkntf~P---------~~~GTlIt  304 (304)
T cd04248         288 LRVKNTFEP---------DHPGTLIT  304 (304)
T ss_pred             EEEecCCCC---------CCCCceeC
Confidence            999999987         35799984

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.

>KOG1695|consensus

Probab=99.68  E-value=3.1e-16  Score=161.27  Aligned_cols=168  Identities=20%  Similarity=0.238  Sum_probs=126.3

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH   80 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~   80 (1012)
                      ++||.+++...+..+..+...|+|++|+|..||..|.+|.||+|||+++|+   |.+.++.+.++++++...+.+.....
T Consensus        27 v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g---l~Gkt~~E~a~vD~i~d~~~D~~~~~  103 (206)
T KOG1695|consen   27 VSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG---LAGKTEEEEAWVDMIVDQFKDFRWEI  103 (206)
T ss_pred             CCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---cCCCCHHHHHHHHHHHHhhhhHHHHH
Confidence            578888887665323345568999999999999999999999999999997   99999999999999877666544331


Q ss_pred             HHHhhh-ccccccHHHHH-HHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHHHHhhhhhh-ccccccCCCchhHH
Q psy3752          81 LYMLEN-ERNKTSIKGYK-RAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWRLDY-YGINLSKSASPLIK  155 (1012)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~-~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~~~L~~l~~-~~~~l~~~~P~L~a  155 (1012)
                      ...... ..........+ .......+.+..+++.|.  ++.||+||++|+||+.++..+..+.. ......+.+|+|.+
T Consensus       104 ~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~l~~l~~~~~~~~~~~~P~L~a  183 (206)
T KOG1695|consen  104 FRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIAEHLDTLEELLDPSALDHFPKLKA  183 (206)
T ss_pred             HHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHHHHHHHHhcCchhhccChHHHH
Confidence            111111 11111111111 344556678888888887  55799999999999999999988776 45555667899999


Q ss_pred             HHHHHhcCCccccccc
Q psy3752         156 YAERIFSRPSYMESLT  171 (1012)
Q Consensus       156 w~~ri~~rp~~~~~lt  171 (1012)
                      |.+++.++|.+++.+.
T Consensus       184 ~~~kv~~~p~ik~~i~  199 (206)
T KOG1695|consen  184 FKERVSSIPNIKKYLE  199 (206)
T ss_pred             HHHHHhcCchHHHHHh
Confidence            9999999999876554

>PRK04531 acetylglutamate kinase; Provisional

Probab=99.65  E-value=1.1e-15  Score=174.02  Aligned_cols=176  Identities=16%  Similarity=0.146  Sum_probs=128.9

Q ss_pred             hHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc---c----C---CCcchHHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy3752         616 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH  685 (1012)
Q Consensus       616 i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~---~----~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~  685 (1012)
                      +..++++|+.|...|.++|||||||..........   .    +   .++.+++...++.. ..+.-|+..         
T Consensus        52 ~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~-~vn~~lv~~---------  121 (398)
T PRK04531         52 LEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQ-RSNLDLVEA---------  121 (398)
T ss_pred             HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHH-HHHHHHHHH---------
Confidence            58899999999999999999999995554333321   1    2   25555555555443 223323222         


Q ss_pred             EeehhchhhhhhhcchHHHHHHhhCCCEEEEcCc----CCCC-CCccHHHHHHHHHhcCCceEEeeeccccccccCCcCC
Q psy3752         686 VMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC  760 (1012)
Q Consensus       686 ~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~----~g~~-~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~  760 (1012)
                                        +..+|+.|.|||+++.    .|.. ++++|.+|+.+|.+|+|++|+++|||+|||+.+    
T Consensus       122 ------------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~----  179 (398)
T PRK04531        122 ------------------VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDAD----  179 (398)
T ss_pred             ------------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCC----
Confidence                              6778999999999762    1221 467999999999999999999999999999753    


Q ss_pred             cCcccccccCH-HHHH---h----hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCC-CcceEEEEee
Q psy3752         761 LSAIIYKKITF-DEVI---S----KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLVYEIY  825 (1012)
Q Consensus       761 ~~a~~i~~i~~-~e~~---~----~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge-~~GT~I~~~~  825 (1012)
                        +++|+.++. ++..   +    +|+|..++.++..|.+....++++++..|+++...|.++ ..||+|...+
T Consensus       180 --g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~  251 (398)
T PRK04531        180 --GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRGE  251 (398)
T ss_pred             --CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecCC
Confidence              567777775 2322   2    689999999988887654567777788899998877654 5799999763

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=99.64  E-value=1.8e-15  Score=159.96  Aligned_cols=159  Identities=21%  Similarity=0.150  Sum_probs=109.7

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFI   79 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~   79 (1012)
                      ++|+.+.++.... ....++||.|+||+|+ +||.+++||.+|++||+++||.+.+.|.   .++++++|+..+...+..
T Consensus        23 l~~e~~~~~~~~~-~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   98 (209)
T TIGR02182        23 IPVEKHVLLNDDE-ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTGK---VSPEIEAWLRKVTGYANK   98 (209)
T ss_pred             CCeEEEECCCCcc-hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCCC---ChHHHHHHHHHHHHHhhh
Confidence            5888877754432 2357899999999998 8999999999999999999986444332   345566665444333211


Q ss_pred             HHHHhhhc-c-c-------------cc--c---H----HHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHH
Q psy3752          80 HLYMLENE-R-N-------------KT--S---I----KGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL  135 (1012)
Q Consensus        80 ~~~~~~~~-~-~-------------~~--~---~----~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~  135 (1012)
                      .+...... . .             ..  .   .    ...+.....+.+.|+.+|++|++++|++| ++|+||+++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g-~~TiADi~l~~~  177 (209)
T TIGR02182        99 LLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKLIDGPNAVNG-ELSEDDILVFPL  177 (209)
T ss_pred             hhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHHHhCccccCC-CCCHHHHHHHHH
Confidence            11100000 0 0             00  0   0    00034556788899999999999999965 699999999999


Q ss_pred             hhhhhhccccccCCCc-hhHHHHHHHhcCCccc
Q psy3752         136 LWRLDYYGINLSKSAS-PLIKYAERIFSRPSYM  167 (1012)
Q Consensus       136 L~~l~~~~~~l~~~~P-~L~aw~~ri~~rp~~~  167 (1012)
                      +.|+...+. .  .+| +|.+|++||++|+++.
T Consensus       178 l~~~~~~~~-~--~~p~~l~~w~~Ri~ar~~~~  207 (209)
T TIGR02182       178 LRNLTLVAG-I--NWPSRVADYLDNMSKKSKVP  207 (209)
T ss_pred             hcCeeeecC-C--CCChHHHHHHHHHHHHhCCC
Confidence            998876431 1  256 9999999999998763

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

Probab=99.63  E-value=8.1e-15  Score=141.84  Aligned_cols=173  Identities=20%  Similarity=0.207  Sum_probs=134.9

Q ss_pred             CCeEEEEEccchHhh--hhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHH
Q psy3752         630 GIELAIVIGGGNICR--GISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKY  707 (1012)
Q Consensus       630 G~~vvIVhGGG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~  707 (1012)
                      +.+++||.|||.++.  .......+++....+|+.+.++.+.+.++++.........+. .+               +..
T Consensus        26 ~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv~-ep---------------~~~   89 (212)
T COG2054          26 QRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTVT-EP---------------EDG   89 (212)
T ss_pred             cceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhcccccceee-ch---------------hhc
Confidence            347999999995543  344455688999999999999999999988876555422211 11               112


Q ss_pred             hhCCCEEEEcCc------C---CCCCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHhhh
Q psy3752         708 LEEGKVVIFAGG------I---GNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK  778 (1012)
Q Consensus       708 L~~g~VPVi~G~------~---g~~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~~G  778 (1012)
                      ...+..||+-+.      .   ..-.+|+|++|.++|.+++|..+++.|||||||+.+|.    ++++++|+..++.. |
T Consensus        90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~-~  164 (212)
T COG2054          90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT-G  164 (212)
T ss_pred             cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc-C
Confidence            344555565330      0   01136699999999999999999999999999998864    59999999998866 7


Q ss_pred             cCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCC-cceEEEE
Q psy3752         779 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKN-EGTLVYE  823 (1012)
Q Consensus       779 ~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~-~GT~I~~  823 (1012)
                      -...|+..-.++.++++.++++||..|+++.+++.|+. +||+|.+
T Consensus       165 ~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg  210 (212)
T COG2054         165 ETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG  210 (212)
T ss_pred             cccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence            78889999999999999999999999999999999965 6999976

>KOG0456|consensus

Probab=99.61  E-value=4.7e-15  Score=158.25  Aligned_cols=235  Identities=18%  Similarity=0.263  Sum_probs=178.1

Q ss_pred             CcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCceeEee
Q psy3752         609 YNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMS  688 (1012)
Q Consensus       609 ~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~  688 (1012)
                      ..+++..+..+.+.+.++...                 ......++..+.|+...++..++...++++|+..|..+....
T Consensus       160 ~~~d~~v~~~~le~leq~Lk~-----------------i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D  222 (559)
T KOG0456|consen  160 LIVDPAVIAKLLEGLEQLLKG-----------------IAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYD  222 (559)
T ss_pred             hccCHHHHHHHHHHHHHHHHH-----------------HHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeec
Confidence            445666666676666665431                 122234567788888888888899999999999999998877


Q ss_pred             hhchhhh----------hhhcchHHHHHH----hhCCCEEEEcCcCCCCC----Cc------cHHHHHHHHHhcCCceEE
Q psy3752         689 AISIEKF----------LESYIPLNAIKY----LEEGKVVIFAGGIGNPF----FT------TDTTAALRAAEIKAEIIL  744 (1012)
Q Consensus       689 ~~~~~~~----------~~~~~~~~l~~~----L~~g~VPVi~G~~g~~~----~s------~D~~Aa~lA~~l~Ad~li  744 (1012)
                      .+.+...          ...+-+.....+    ...+.|||+.||.|...    ++      +|..|+.+|.+||+|.+-
T Consensus       223 ~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQ  302 (559)
T KOG0456|consen  223 AFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQ  302 (559)
T ss_pred             hhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhh
Confidence            7665322          111122222222    13478999999877321    22      899999999999999999


Q ss_pred             eeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEE
Q psy3752         745 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV  821 (1012)
Q Consensus       745 ilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I  821 (1012)
                      +|.|||||+|+||++.|.|++++.++++|+.+   .|..+.++...+.+.+..||+.|.|..+|         ...||.|
T Consensus       303 VWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP---------~~~GTvI  373 (559)
T KOG0456|consen  303 VWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNP---------TAPGTVI  373 (559)
T ss_pred             hhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCC---------CCCceEe
Confidence            99999999999999999999999999999987   89999999999999999999999999888         4579999


Q ss_pred             EEeeehh---------hhh--hhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEE
Q psy3752         822 YEIYIMI---------ISD--IKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQV  869 (1012)
Q Consensus       822 ~~~~~~~---------~~~--i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V  869 (1012)
                      +|...|.         -++  +++-...+|-....+|.+-|+-+---..+.+++-.-.|
T Consensus       374 ~~d~~m~k~~~TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvvaTSEV  432 (559)
T KOG0456|consen  374 TPDRDMSKAGLTSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVATSEV  432 (559)
T ss_pred             ccchhhhhccceEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEEeeeE
Confidence            9873321         122  24566788999999988888877666666666655444

>PLN02907 glutamate-tRNA ligase

Probab=99.56  E-value=1.8e-14  Score=174.92  Aligned_cols=125  Identities=16%  Similarity=0.190  Sum_probs=103.5

Q ss_pred             cCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHH
Q psy3752          20 MNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKR   98 (1012)
Q Consensus        20 inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (1012)
                      .+|.|+||+|+ +||.+|+||.||++||++.||+..|+|.++.+++++++|+.+.....         .           
T Consensus        32 ~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~d~~erAqV~qWL~~~~~~~---------~-----------   91 (722)
T PLN02907         32 SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFESSQVDEWLDYAPTFS---------S-----------   91 (722)
T ss_pred             cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHHhhcc---------c-----------
Confidence            47999999999 58899999999999999999988899999999999999976543210         0           


Q ss_pred             HHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhh--hhccccccCCCchhHHHHHHHhcCCc
Q psy3752          99 AREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRL--DYYGINLSKSASPLIKYAERIFSRPS  165 (1012)
Q Consensus        99 ~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l--~~~~~~l~~~~P~L~aw~~ri~~rp~  165 (1012)
                       ...+...|+.||++|++++||+|+++|+||+++++.+.+.  .+........||+|.+|+++|.++|+
T Consensus        92 -~~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs  159 (722)
T PLN02907         92 -GSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYS  159 (722)
T ss_pred             -HHHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence             0134567899999999999999999999999999988654  22233334679999999999999999

>KOG4420|consensus

Probab=99.56  E-value=1.7e-14  Score=146.65  Aligned_cols=171  Identities=28%  Similarity=0.405  Sum_probs=118.7

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC-CCCCCC-CHHHHHHHHH-----HH
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY-PQLMSS-DPLMRARARL-----ML   70 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~-~~L~p~-~~~era~v~~-----~~   70 (1012)
                      |+|+...|++..   .++||..+||.|.||||.+|+.+|+|+.-|++|++++|.+ ..|.|. +..+..++..     |.
T Consensus        50 id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger~l~pe~~S~~~d~~l~~e~~l~~  129 (325)
T KOG4420|consen   50 IDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGERVLMPEVGSLQHDRVLQYEELLDA  129 (325)
T ss_pred             cccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccccccccccccccHHHHHHHHHHHh
Confidence            567777888765   6799999999999999999999999999999999999965 447773 2211112111     10


Q ss_pred             ---HHHHH------HH------------HHHH-------HHhhhcccc--------------------ccHHHHHHHHHH
Q psy3752          71 ---LNFEK------EI------------FIHL-------YMLENERNK--------------------TSIKGYKRAREE  102 (1012)
Q Consensus        71 ---~~~~~------~~------------~~~~-------~~~~~~~~~--------------------~~~~~~~~~~~~  102 (1012)
                         ..+..      .+            ..+.       ........+                    .+...+......
T Consensus       130 lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~akqkkl~~kl~~hdd~s~lkkild~  209 (325)
T KOG4420|consen  130 LPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAKQKKLMAKLLEHDDVSYLKKILDE  209 (325)
T ss_pred             cCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence               00000      00            0000       000000000                    111223444566


Q ss_pred             HHHHHHHHHhcccC----CCcccCCCcCHHHHHHHHHhhhhhhcccc---c-cCCCchhHHHHHHHhcCCccccccc
Q psy3752         103 IRDRLITLAPLFLK----NKYMLGDEFSMLDVVIAPLLWRLDYYGIN---L-SKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       103 l~~~L~~Le~~L~~----~~fL~Gd~~TlADi~l~~~L~~l~~~~~~---l-~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +...|+.+|.-|.+    .+||||+.||+||+++.+.|+++...|++   | ....|+|..|++|++.|++|.+.+.
T Consensus       210 l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gsrpnle~Yf~rvrrR~sf~kvlg  286 (325)
T KOG4420|consen  210 LAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGSRPNLESYFERVRRRFSFRKVLG  286 (325)
T ss_pred             HHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCCCccHHHHHHHHHhhhHHHHhhh
Confidence            77778888888876    57999999999999999999999888774   2 2467999999999999999998775

>PLN02825 amino-acid N-acetyltransferase

Probab=99.55  E-value=1.6e-13  Score=160.17  Aligned_cols=202  Identities=17%  Similarity=0.134  Sum_probs=146.5

Q ss_pred             hhHhHHHHHHHHHhCCCeEEEEEccchHhhhh---ccccc----CC---CcchHHHHHHHHHHHHHHHHHHH--------
Q psy3752         615 IIKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKIQ----NI---DRSTADYMGMLATIINSLALFDI--------  676 (1012)
Q Consensus       615 ~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~---~~~~~----~~---~~~~~~~~~~~~~~~~~~~l~~~--------  676 (1012)
                      .+.+++.+|+.|...|.++|||||||......   .+...    |+   ++.+++.. +.+.+..+..+.+.        
T Consensus        33 ~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~-~~~~G~v~~~i~a~Ls~~~~v~  111 (515)
T PLN02825         33 HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQAS-MEAAGKIRVMIEAKLSPGPSIP  111 (515)
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHH-HHHHHHHHHHHHHhhccccchh
Confidence            57899999999999999999999999443332   22221    22   55666663 66677766666665        


Q ss_pred             -HHhcCCce----eEeehhchhh------------------hhhhcchHHHHHHhhCCCEEEEcC----cCCC-CCCccH
Q psy3752         677 -LNKSGIIS----HVMSAISIEK------------------FLESYIPLNAIKYLEEGKVVIFAG----GIGN-PFFTTD  728 (1012)
Q Consensus       677 -l~~~gi~a----~~l~~~~~~~------------------~~~~~~~~~l~~~L~~g~VPVi~G----~~g~-~~~s~D  728 (1012)
                       |+++|+++    +++++.+.+.                  .++.++.+.+..+|++|.|||+++    ..|. -++++|
T Consensus       112 ~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD  191 (515)
T PLN02825        112 NLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTY  191 (515)
T ss_pred             HHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHH
Confidence             58888888    6776655411                  156789999999999999999987    1222 246799


Q ss_pred             HHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hh---------c--------------C--
Q psy3752         729 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KK---------L--------------E--  780 (1012)
Q Consensus       729 ~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G---------~--------------~--  780 (1012)
                      .+|+.+|.+|+||+||++|||+ +++.+      .++|++++.+|+.+   .+         .              .  
T Consensus       192 ~vA~avA~aL~A~KLI~ltd~~-~~~~~------g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (515)
T PLN02825        192 EVATACALAIGADKLICIVDGP-ILDEN------GRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDS  264 (515)
T ss_pred             HHHHHHHHHcCCCeEEEEeCcc-eecCC------CCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhcccccccccccccc
Confidence            9999999999999999999977 55433      45677776655433   11         0              0  


Q ss_pred             ------------------------------c-------------------------ccHHHHHHHHhCCC-cEEEEecCC
Q psy3752         781 ------------------------------I-------------------------MDSTAFSFCRDQKL-PIRVFSIIK  804 (1012)
Q Consensus       781 ------------------------------v-------------------------~~~~aa~~a~~~gi-~v~I~~g~~  804 (1012)
                                                    .                         .++.+|..|.+.|+ +++++++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~  344 (515)
T PLN02825        265 VNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTI  344 (515)
T ss_pred             ccccccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCC
Confidence                                          0                         01456777788899 699999999


Q ss_pred             chhHHH-HhcCCCcceEEEEe
Q psy3752         805 SGALKR-VIEGKNEGTLVYEI  824 (1012)
Q Consensus       805 ~~~i~~-~l~Ge~~GT~I~~~  824 (1012)
                      ++.+.. ++.-+++||.|+..
T Consensus       345 ~gall~elft~dg~gt~i~~~  365 (515)
T PLN02825        345 EGVLLLELFTRDGMGTMIASD  365 (515)
T ss_pred             CchHHHHhhccCCceeEeccC
Confidence            998876 55567789999876

>KOG1422|consensus

Probab=99.41  E-value=2.2e-12  Score=128.60  Aligned_cols=165  Identities=21%  Similarity=0.431  Sum_probs=124.8

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH   80 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~   80 (1012)
                      ++|....||...+++||+++.|.|++|+|..|+...+||..|-++|++++|++.+---++.|.+-+       ...++..
T Consensus        36 ~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E~asa-------g~diF~k  108 (221)
T KOG1422|consen   36 VPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPESASA-------GSDIFAK  108 (221)
T ss_pred             CCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHHHHhh-------HHHHHHH
Confidence            478999999999999999999999999999999999999999999999998755422223332222       2223333


Q ss_pred             HHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccC---CCcccCCCcCHHHHHHHHHhhhhh-----hccccccCCCch
Q psy3752          81 LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK---NKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASP  152 (1012)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~---~~fL~Gd~~TlADi~l~~~L~~l~-----~~~~~l~~~~P~  152 (1012)
                      +..+.....+   ..-+...+.+.+.|..|+.+|..   ++||.||++|+||+.+.|-|+.++     +.+++++.+.+.
T Consensus       109 F~~fi~ksk~---~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~~~IP~~lt~  185 (221)
T KOG1422|consen  109 FSAFIKKSKD---AANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKNFEIPASLTG  185 (221)
T ss_pred             HHHHHhCchh---hccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcCCCCchhhhH
Confidence            2222111111   11123445677788999999974   799999999999999999998875     346788888999


Q ss_pred             hHHHHHHHhcCCccccccchhhhh
Q psy3752         153 LIKYAERIFSRPSYMESLTPAEKI  176 (1012)
Q Consensus       153 L~aw~~ri~~rp~~~~~lt~~~~l  176 (1012)
                      +.+|+..+.++.+|..+-+ -.+.
T Consensus       186 V~rYl~~~ya~d~F~~tcp-~d~e  208 (221)
T KOG1422|consen  186 VWRYLKNAYARDEFTNTCP-ADQE  208 (221)
T ss_pred             HHHHHHHHHhHHHhhcCCc-hHHH
Confidence            9999999999999998876 4443

>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=4.5e-12  Score=133.83  Aligned_cols=158  Identities=25%  Similarity=0.311  Sum_probs=104.9

Q ss_pred             eEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752         350 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK  429 (1012)
Q Consensus       350 ~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~  429 (1012)
                      .-+++--||.+++|     +.|+  .+..|. +-++.+++..+.         ..+.+-+.+-...+-.++.++.-+-.+
T Consensus        72 ~av~vEvN~ETDFV-----AkN~--~F~~l~-~~ia~~~l~~~~---------~~ve~l~~~~~~~~~tv~e~~~~~~Ak  134 (296)
T COG0264          72 KAVLVEVNCETDFV-----AKNA--EFQELA-NKIAKAALEKKP---------ADVEELKAAFEPGGKTVEEEIAALIAK  134 (296)
T ss_pred             EEEEEEEeccccce-----eCCh--hHHHHH-HHHHHHHHHhCc---------ccHHHHHhhhcccCccHHHHHHHHHHH
Confidence            34566677776655     3333  344444 334444444331         123333332222222455555555544


Q ss_pred             hhhhh-hhhccccc-cCceEEEEEe--CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH----------
Q psy3752         430 LGKKI-LNISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------  495 (1012)
Q Consensus       430 ~~~~a-~k~~~r~~-~eG~v~~~~~--~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~----------  495 (1012)
                      -+.+- .+|..... .+|.+++|+|  +++||||++++. +      ...+++++|||||||++|.+++.          
T Consensus       135 IGENi~lRR~~~~~~~~~~v~~Y~H~~griGVlv~~~~~-~------~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~  207 (296)
T COG0264         135 IGENISLRRFAVLEAGDGVVGSYLHGNGRIGVLVALKGG-A------ADEELAKDIAMHIAAMNPQYLSREDVPAEVVEK  207 (296)
T ss_pred             hccceeEEEEEEeecCcccEEEEEeCCCcEEEEEEEecc-c------hHHHHHHHHHHHHHhcCCccCChhhCCHHHHHH
Confidence            33222 23333333 3478999999  689999999998 3      35689999999999999997654          


Q ss_pred             ------------------------------------hhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCee
Q psy3752         496 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL  537 (1012)
Q Consensus       496 ------------------------------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~i  537 (1012)
                                                          |.|+|++|+++||++++++.      +++|.+|+||++|+||
T Consensus       208 Er~i~~~~~~~~gKP~~i~eKiVeGr~~Kf~~E~~Ll~Q~fV~d~~~TV~~~lke~------~~~v~~FvR~evGegi  279 (296)
T COG0264         208 EREIFLAQLKAEGKPENIVEKIVEGRMNKFLAEVCLLEQPFVKDPKKTVEQLLKEA------NAKVTEFVRFEVGEGI  279 (296)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHhHHHHHHHHHHhhccCceecCcchhHHHHHHhc------CceeeeeeeeeccCCc
Confidence                                                78999999999999999876      7899999999999987

>TIGR00116 tsf translation elongation factor Ts

Probab=99.37  E-value=4.5e-12  Score=137.05  Aligned_cols=156  Identities=21%  Similarity=0.247  Sum_probs=103.9

Q ss_pred             eEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752         350 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK  429 (1012)
Q Consensus       350 ~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~  429 (1012)
                      ..+++--||.+++|.       ++..++.|.-.+. .++...         ....+.+..++....+..+ .++..+--+
T Consensus        69 ~~~ivElncETDFVA-------rne~F~~l~~~ia-~~~~~~---------~~~~~e~l~~~~~~~~~tv-d~i~~~~a~  130 (290)
T TIGR00116        69 KAVIVEVNSETDFVA-------KNAGFKEFANKLL-DELKAN---------KITTLEELQAQELENREKV-EYLAALAAK  130 (290)
T ss_pred             EEEEEEEecCCcccc-------CChHHHHHHHHHH-HHHHhc---------CCCCHHHHhhccccCCCcH-HHHHHHHHH
Confidence            567888888877663       3445655554433 333221         1122333322211111245 333333322


Q ss_pred             -hhhhhhhhcccccc-CceEEEEEe--CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH----------
Q psy3752         430 -LGKKILNISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------  495 (1012)
Q Consensus       430 -~~~~a~k~~~r~~~-eG~v~~~~~--~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~----------  495 (1012)
                       |-.-.-++..++.+ +|.+++|+|  |++||||++++++|.        +|+++|||||+|++|.+++.          
T Consensus       131 iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkigvlv~~~~~~~~--------~~ak~iAmhIaA~~P~~l~~~~vp~~vie~  202 (290)
T TIGR00116       131 IGENINLRRVAVLEGDSNVIGSYLHAGARIGVLVALKGKADE--------ELAKHIAMHVAASKPQFIDPDDVSAEVVKK  202 (290)
T ss_pred             hccceEEEEEEEEecCCCcEEEEEcCCCcEEEEEEEecCchH--------HHHHHHHHHHHhcCCccCchhhCCHHHHHH
Confidence             32222345555554 379999999  799999999997662        58999999999999987544          


Q ss_pred             ------------------------------------hhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCee
Q psy3752         496 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL  537 (1012)
Q Consensus       496 ------------------------------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~i  537 (1012)
                                                          |+|+|++|+++||++++++      .+++|.+|+||++|+|+
T Consensus       203 Erei~~~~~~~~gKP~~i~eKIv~Grl~Kf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~~~v~~F~R~~vGegi  274 (290)
T TIGR00116       203 ERQIQTDQAELSGKPKEIAEKMVEGRMKKFLAEISLLGQKFVMDPSKTVGQFLKE------KNAKVTEFIRFEVGEGI  274 (290)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHhhhHHHHHhhhceeeecccccCCccCHHHHHHH------cCCEEEEEEEEEecCCc
Confidence                                                6899999999999999986      35999999999999985

This protein is found in Bacteria, mitochondria, and chloroplasts.

>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=99.34  E-value=3.6e-12  Score=134.02  Aligned_cols=109  Identities=28%  Similarity=0.369  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHhhh-hhhhhhcccccc-CceEEEEEe--CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCC
Q psy3752         417 GKLSKAEEILRIKLG-KKILNISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPIN  492 (1012)
Q Consensus       417 ~d~~~a~~~l~~~~~-~~a~k~~~r~~~-eG~v~~~~~--~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~  492 (1012)
                      ..+..++..+.-+-+ .-.-+++.++.+ +|.+++|+|  ||+|+||+++++++..      ++++++|||||+|++|.+
T Consensus        63 ~tv~d~i~~~i~~igEnI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~------~~~ak~iAmhIaA~~P~~  136 (221)
T PF00889_consen   63 KTVKDAIAELIAKIGENIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSA------KEFAKDIAMHIAAMNPKY  136 (221)
T ss_dssp             SHHHHHHHHHHHHH-S-EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGG------HHHHHHHHHHHHHH--SB
T ss_pred             ccHHHHHHHHHHHhCCCEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchH------HHHHHHHHHHHhhhCccc
Confidence            445555554444422 222455555554 799999999  7999999999999865      689999999999999986


Q ss_pred             hhH----------------------------------------------hhcccccCCCccHHHHHHHHHHHhCCceEEE
Q psy3752         493 LDQ----------------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIR  526 (1012)
Q Consensus       493 ~~~----------------------------------------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~  526 (1012)
                      ++.                                              |+|+|++|+++||+|++++..++    |+|.
T Consensus       137 l~~~~vp~~~~~~E~~i~~~~~~~~gKpe~i~ekIv~Gkl~k~~~e~~Ll~Q~fv~D~~~tV~~~l~~~~~~----i~v~  212 (221)
T PF00889_consen  137 LSEEDVPAEVLEKEKEIAKEQAKAEGKPENIIEKIVEGKLKKFYKENCLLEQPFVKDPKKTVKQYLKEVGKE----IKVV  212 (221)
T ss_dssp             SSCTGS-CCHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHCBTCCSBETTETTSBHHHHHHCTTHH-----EEE
T ss_pred             cCcccCCHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhhHhheehheeecCCCccCCCCccHHHHHHhcCCC----cEEE
Confidence            543                                              78999999999998888876554    8999


Q ss_pred             EEEEeecCC
Q psy3752         527 RFKLFKTNN  535 (1012)
Q Consensus       527 rf~~~~~g~  535 (1012)
                      +|.||++||
T Consensus       213 ~F~R~~vGE  221 (221)
T PF00889_consen  213 GFVRFEVGE  221 (221)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEEecCC
Confidence            999999986

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....

>PRK09377 tsf elongation factor Ts; Provisional

Probab=99.33  E-value=1.2e-11  Score=133.68  Aligned_cols=155  Identities=25%  Similarity=0.295  Sum_probs=106.9

Q ss_pred             eEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752         350 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK  429 (1012)
Q Consensus       350 ~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~  429 (1012)
                      .-+++.-||.+++|.       ++..+..|.-.+. .++....         ...+.+..++-. .+..+..++..+.-+
T Consensus        70 ~~~~vElncETDFVA-------rne~F~~l~~~i~-~~~l~~~---------~~~~e~ll~~~~-~g~tv~d~i~~~~~~  131 (290)
T PRK09377         70 KGVLVEVNSETDFVA-------KNEDFQALANEVA-EAALAAK---------PADVEALLALKL-DGGTVEEARTELIAK  131 (290)
T ss_pred             EEEEEEEecCCcccc-------CChHHHHHHHHHH-HHHHhcC---------CCCHHHHHhccc-cCCcHHHHHHHHHHH
Confidence            568888888887763       4445666654443 3333221         112333222211 233666666666554


Q ss_pred             hhhh-hhhhccccc-cCceEEEEEe--CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH----------
Q psy3752         430 LGKK-ILNISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------  495 (1012)
Q Consensus       430 ~~~~-a~k~~~r~~-~eG~v~~~~~--~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~----------  495 (1012)
                      -+.+ .-+|..++. ++|.|++|+|  |++||||+++++++         +|+++|||||+|++|.+++.          
T Consensus       132 iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkigvlV~~~~~~~---------~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~  202 (290)
T PRK09377        132 IGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDE---------ELAKDIAMHIAAMNPEYLSREDVPAEVVEK  202 (290)
T ss_pred             hcCceEEEEEEEEeecCCEEEEEEcCCCcEEEEEEEccCcH---------HHHHHHHHHHHhcCCccCChhhCCHHHHHH
Confidence            3322 234555554 4789999999  79999999998743         58999999999999986544          


Q ss_pred             ------------------------------------hhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCee
Q psy3752         496 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL  537 (1012)
Q Consensus       496 ------------------------------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~i  537 (1012)
                                                          |+|+|++|+++||++++++      .+++|.+|+||++||++
T Consensus       203 E~~i~~~~~~~~gKP~~i~eKIv~Grl~Kf~~e~~Ll~Q~fi~D~~~tV~~~l~~------~~i~v~~F~R~evGe~~  274 (290)
T PRK09377        203 EREIAKEQAKEEGKPEEIVEKIVEGRLNKFLKEVVLLEQPFVKDPKKTVGQLLKE------AGAKVVGFVRFEVGEGI  274 (290)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHhHHHHHHhhhceeccCcccCCCCcCHHHHHHH------cCCEEEEEEEEEecCcc
Confidence                                                7899999999999999886      36999999999999974

>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=99.28  E-value=1.7e-11  Score=114.95  Aligned_cols=106  Identities=42%  Similarity=0.803  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhh
Q psy3752          60 PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRL  139 (1012)
Q Consensus        60 ~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l  139 (1012)
                      |.+|+++++|+.+++..+.+.........    ....+.....+.+.|..+|++|++++|++|+++|+|||++++.++++
T Consensus         1 p~~ra~~r~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~   76 (107)
T cd03186           1 PVARARSRLLMHRIEQDWYPLVDTIEKGR----KKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRL   76 (107)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHH
Confidence            35789999998888776655543322211    23345667888999999999999999999999999999999998776


Q ss_pred             hhccccccCCCchhHHHHHHHhcCCccccc
Q psy3752         140 DYYGINLSKSASPLIKYAERIFSRPSYMES  169 (1012)
Q Consensus       140 ~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~  169 (1012)
                      ...+.++...+|++.+|+++|.+||+|++.
T Consensus        77 ~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~  106 (107)
T cd03186          77 PALGIELPKQAKPLKDYMERVFARDSFQKS  106 (107)
T ss_pred             HHcCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence            656665555799999999999999999864

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=99.22  E-value=9.8e-11  Score=111.59  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=86.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------cccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHH
Q psy3752          59 DPLMRARARLMLLNFEKEIFIHLYMLENE---------RNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLD  129 (1012)
Q Consensus        59 ~~~era~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlAD  129 (1012)
                      |+.+|+++++|+.+....+.+........         .........+.....+.+.|..||++|++++|++|+++|+||
T Consensus         1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD   80 (117)
T cd03182           1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD   80 (117)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence            46789999999888777765543322211         122334556777888999999999999988999999999999


Q ss_pred             HHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCcc
Q psy3752         130 VVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY  166 (1012)
Q Consensus       130 i~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~  166 (1012)
                      |++++.+.++...+.++...+|+|.+|++++.+||++
T Consensus        81 i~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~  117 (117)
T cd03182          81 ITAFVGLDFAKVVKLRVPEELTHLRAWYDRMAARPSA  117 (117)
T ss_pred             HHHHHHhHHHHhcCCCCccccHHHHHHHHHHHhccCC
Confidence            9999999988777776656799999999999999974

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti

>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=99.21  E-value=5e-11  Score=113.40  Aligned_cols=111  Identities=16%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhh
Q psy3752          58 SDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLW  137 (1012)
Q Consensus        58 ~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~  137 (1012)
                      .+|..++++++|+.+.+..+.+.+........... +..+.....+.+.|..+|++|++++|++|+++|+||+++++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~   80 (115)
T cd03196           2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPE-ESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVR   80 (115)
T ss_pred             CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCc-ccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHH
Confidence            47889999999987777666655443222111111 12456678899999999999999999999999999999999886


Q ss_pred             hhhhcccc--ccCCCchhHHHHHHHhcCCccccc
Q psy3752         138 RLDYYGIN--LSKSASPLIKYAERIFSRPSYMES  169 (1012)
Q Consensus       138 ~l~~~~~~--l~~~~P~L~aw~~ri~~rp~~~~~  169 (1012)
                      ++......  ....||+|.+|++++.+||+|++.
T Consensus        81 ~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~  114 (115)
T cd03196          81 QFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKI  114 (115)
T ss_pred             HHHHhhhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence            65432211  136699999999999999999864

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.

>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=99.15  E-value=2.6e-10  Score=109.03  Aligned_cols=107  Identities=21%  Similarity=0.157  Sum_probs=80.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhh---hccc--------cccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCc
Q psy3752          57 SSDPLMRARARLMLLNFEKEIFIHLYMLE---NERN--------KTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEF  125 (1012)
Q Consensus        57 p~~~~era~v~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~  125 (1012)
                      |.++.+|+++++|+.+....+.+.+....   ....        .......+.....+.+.|+.||++|++++|++|+++
T Consensus         2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~   81 (119)
T cd03189           2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL   81 (119)
T ss_pred             CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence            57889999999998777766655432211   1111        012233345567889999999999999999999999


Q ss_pred             CHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCC
Q psy3752         126 SMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRP  164 (1012)
Q Consensus       126 TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp  164 (1012)
                      |+|||++++.+.|+...+. ....+|+|.+|++++++||
T Consensus        82 t~ADi~l~~~~~~~~~~~~-~~~~~p~l~~w~~~~~~~p  119 (119)
T cd03189          82 TAADIMMSFPLEAALARGP-LLEKYPNIAAYLERIEARP  119 (119)
T ss_pred             CHHHHHHHHHHHHHHHcCc-ccccCchHHHHHHHHhcCC
Confidence            9999999998888765554 3456999999999999987

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl

>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress

Probab=99.13  E-value=1.4e-10  Score=109.89  Aligned_cols=107  Identities=25%  Similarity=0.274  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc-----cccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYMLENERN-----KTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL  136 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L  136 (1012)
                      +|+++++|+.+....+.+..........     .......+.....+.+.+..+|+.|++++||+|+++|+|||++++.+
T Consensus         2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~   81 (114)
T cd03188           2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL   81 (114)
T ss_pred             cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence            4788999987777766555432211111     11133345667789999999999999899999999999999999999


Q ss_pred             hhhhhccccccCCCchhHHHHHHHhcCCccccc
Q psy3752         137 WRLDYYGINLSKSASPLIKYAERIFSRPSYMES  169 (1012)
Q Consensus       137 ~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~  169 (1012)
                      .++...+.++ +.+|++.+|+++|.++|+|+++
T Consensus        82 ~~~~~~~~~~-~~~p~l~~w~~~~~~~p~~k~~  113 (114)
T cd03188          82 RWAPGVGLDL-SDWPNLAAYLARVAARPAVQAA  113 (114)
T ss_pred             HHHhhcCCCh-hhChHHHHHHHHHHhCHHhHhh
Confidence            8876655543 4689999999999999999875

The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for

>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=99.13  E-value=2.7e-10  Score=110.11  Aligned_cols=107  Identities=21%  Similarity=0.269  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhh
Q psy3752          61 LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD  140 (1012)
Q Consensus        61 ~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~  140 (1012)
                      .+|+++++|+.+++..+.+.+.......    ....+.....+.+.|+.||++|++++|++|+++|+|||++++.+.++.
T Consensus         2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~   77 (126)
T cd03185           2 YERAVARFWAAFIDDKLFPAGRKVLAAK----GEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFR   77 (126)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence            5789999998887777665543332211    223345677888999999999998999999999999999999988764


Q ss_pred             hc----ccc--ccCCCchhHHHHHHHhcCCccccccc
Q psy3752         141 YY----GIN--LSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       141 ~~----~~~--l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ..    +.+  ....+|++.+|+++|+++|+|++++.
T Consensus        78 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~  114 (126)
T cd03185          78 AYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLP  114 (126)
T ss_pred             HHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCC
Confidence            32    333  13568999999999999999998876

The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi

>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=99.06  E-value=3.5e-10  Score=108.06  Aligned_cols=105  Identities=16%  Similarity=0.216  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc---cccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYMLENE---RNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR  138 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~  138 (1012)
                      +|+++++|+.+....+.+........   ..+   ...+.....+.+.|..||++|++++||+|+++|+||+++++++.+
T Consensus         2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~   78 (118)
T cd03177           2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGA---EPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVST   78 (118)
T ss_pred             hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHH
Confidence            47788888766655554333221111   111   123456678899999999999888999999999999999999988


Q ss_pred             hhh-ccccccCCCchhHHHHHHHhcCCcccccc
Q psy3752         139 LDY-YGINLSKSASPLIKYAERIFSRPSYMESL  170 (1012)
Q Consensus       139 l~~-~~~~l~~~~P~L~aw~~ri~~rp~~~~~l  170 (1012)
                      +.. .+.+. ..+|+|.+|+++|.++|+|++..
T Consensus        79 ~~~~~~~~~-~~~p~l~~w~~~~~~~p~~~~~~  110 (118)
T cd03177          79 LEALLPLDL-SKYPNVRAWLERLKALPPYEEAN  110 (118)
T ss_pred             HHHhcCCCh-hhCchHHHHHHHHHcccchHHHH
Confidence            765 44443 45899999999999999999754

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th

>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs

Probab=99.06  E-value=7.5e-10  Score=106.15  Aligned_cols=108  Identities=18%  Similarity=0.327  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc---CCCcccCCCcCHHHHHHHHH
Q psy3752          59 DPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL---KNKYMLGDEFSMLDVVIAPL  135 (1012)
Q Consensus        59 ~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~---~~~fL~Gd~~TlADi~l~~~  135 (1012)
                      |+.+|+++++++.+.. .+...++.....+.+  .       ..+.+.++.||+.|+   +++|++| ++|+|||+++|+
T Consensus         1 d~~~ra~~~~~~~~~~-~~~~~~~~~~~~~~~--~-------~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~   69 (120)
T cd03203           1 DPAKREFADELLAYTD-AFTKALYSSLIKGDP--S-------AEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPF   69 (120)
T ss_pred             CHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCc--h-------HHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHH
Confidence            5678999999966632 232222222111111  1       234566777777775   5899999 999999999999


Q ss_pred             hhhhhh-----ccccccCCCchhHHHHHHHhcCCccccccchhhhhh
Q psy3752         136 LWRLDY-----YGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIM  177 (1012)
Q Consensus       136 L~~l~~-----~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt~~~~l~  177 (1012)
                      +.++..     .++++.+.||+|.+|+++|.+||+|+++.++-++++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~  116 (120)
T cd03203          70 IERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDPQELL  116 (120)
T ss_pred             HHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCHHHHH
Confidence            876532     456665679999999999999999999887444444

GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar

>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=99.06  E-value=4.6e-10  Score=107.01  Aligned_cols=108  Identities=20%  Similarity=0.162  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----h--hhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHH
Q psy3752          62 MRARARLMLLNFEKEIFIHLYM-----L--ENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP  134 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~  134 (1012)
                      +|+++++|+.+....+.+....     .  .....+......+.....+.+.|..||++|++++|++|+++|+|||++++
T Consensus         2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~   81 (118)
T cd03187           2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP   81 (118)
T ss_pred             chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence            4677888866655444222111     0  11112344455566778899999999999999999999999999999999


Q ss_pred             Hhhhhhhccc-cccCCCchhHHHHHHHhcCCccccc
Q psy3752         135 LLWRLDYYGI-NLSKSASPLIKYAERIFSRPSYMES  169 (1012)
Q Consensus       135 ~L~~l~~~~~-~l~~~~P~L~aw~~ri~~rp~~~~~  169 (1012)
                      ++.++...+. ...+.+|+|.+|++++.++|+|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~  117 (118)
T cd03187          82 YLQYLMATPFAKLFDSRPHVKAWWEDISARPAWKKV  117 (118)
T ss_pred             HHHHHHHccchhhhhcCchHHHHHHHHHhCHHHHhh
Confidence            9877654322 1235699999999999999999865

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a

>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4

Probab=99.05  E-value=9e-10  Score=108.93  Aligned_cols=108  Identities=21%  Similarity=0.318  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhh
Q psy3752          61 LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD  140 (1012)
Q Consensus        61 ~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~  140 (1012)
                      ..|+++++|+.+....+.+..+....   ....+..+.....+.+.|..||++|++++|++|+++|+||+++++.+.++.
T Consensus         3 ~~~a~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~   79 (142)
T cd03190           3 ELRSEIDELNEWIYDNINNGVYKAGF---ATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFD   79 (142)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHhh---ccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHH
Confidence            45788999988887776655443322   233344566778899999999999998999999999999999999987653


Q ss_pred             hc-------cccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         141 YY-------GINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       141 ~~-------~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ..       +....+.||+|.+|+++|.++|+|++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~  117 (142)
T cd03190          80 AVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTN  117 (142)
T ss_pred             HHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcC
Confidence            21       11223579999999999999999999876

ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.

>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress

Probab=99.04  E-value=5.3e-10  Score=107.33  Aligned_cols=110  Identities=19%  Similarity=0.295  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHH
Q psy3752          61 LMRARARLMLLNFEKEIFIH----LYMLENERNK-TSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIA  133 (1012)
Q Consensus        61 ~era~v~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~  133 (1012)
                      .+|+++++|+.++...+.+.    +......... ......+.....+.+.|..+|++|+  .++||+|+++|+|||+++
T Consensus         2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~   81 (121)
T cd03191           2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV   81 (121)
T ss_pred             hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence            57899999988776555322    1111111101 0122223344668899999999997  458999999999999999


Q ss_pred             HHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         134 PLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       134 ~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +.+.++...++++ ..+|+|.+|++++.++|+|+++..
T Consensus        82 ~~~~~~~~~~~~~-~~~p~l~~w~~~~~~~p~~~~~~~  118 (121)
T cd03191          82 PQVYNARRFGVDL-SPYPTIARINEACLELPAFQAAHP  118 (121)
T ss_pred             HHHHHHHHhCCCc-ccCcHHHHHHHHHHhChhHHHhCc
Confidence            9998876666554 568999999999999999998765

The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th

>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=99.04  E-value=2.2e-10  Score=108.37  Aligned_cols=109  Identities=20%  Similarity=0.251  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---hhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYM---LENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR  138 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~  138 (1012)
                      +|+++++|+.+.+..+.+.+..   .............+.....+.+.|+.+|+.|++++|++|+++|+|||++++.+.+
T Consensus         1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~   80 (113)
T cd03178           1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRR   80 (113)
T ss_pred             ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence            3678888877666554333211   1111112233345667788999999999999989999999999999999999988


Q ss_pred             hhhccccccCCCchhHHHHHHHhcCCcccccc
Q psy3752         139 LDYYGINLSKSASPLIKYAERIFSRPSYMESL  170 (1012)
Q Consensus       139 l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~l  170 (1012)
                      ....+..+...||++.+|++++.++|+|+.++
T Consensus        81 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~  112 (113)
T cd03178          81 LEWIGIDDLDDFPNVKRWLDRIAARPAVQRGL  112 (113)
T ss_pred             HHhccccchhhchHHHHHHHHHhhCHHHHHhc
Confidence            86665554567999999999999999998753

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en

>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs

Probab=99.03  E-value=1.2e-09  Score=102.60  Aligned_cols=104  Identities=15%  Similarity=0.185  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----h-hccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYML----E-NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL  136 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L  136 (1012)
                      +|+++++|+.+....+.+.+...    . ...........+...+.+.+.|+.+|++|++++|++|+++|+||+++++++
T Consensus         2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~   81 (110)
T cd03180           2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA   81 (110)
T ss_pred             chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence            47788888766655554443211    1 111223334456677889999999999999899999999999999999888


Q ss_pred             hhhhhccccccCCCchhHHHHHHHhcCCcc
Q psy3752         137 WRLDYYGINLSKSASPLIKYAERIFSRPSY  166 (1012)
Q Consensus       137 ~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~  166 (1012)
                      ......+.. ...||+|.+|+++|.++|+|
T Consensus        82 ~~~~~~~~~-~~~~p~l~~~~~~~~~~p~~  110 (110)
T cd03180          82 YRWFELPIE-RPPLPHLERWYARLRARPAF  110 (110)
T ss_pred             HHHHHcccc-cccCchHHHHHHHHHhCCCC
Confidence            533333332 45699999999999999986

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.

>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=99.02  E-value=6.7e-10  Score=107.45  Aligned_cols=80  Identities=21%  Similarity=0.336  Sum_probs=67.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhcc-cCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhc--CCcccc
Q psy3752          92 SIKGYKRAREEIRDRLITLAPLF-LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFS--RPSYME  168 (1012)
Q Consensus        92 ~~~~~~~~~~~l~~~L~~Le~~L-~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~--rp~~~~  168 (1012)
                      .....+...+.+.+.+..+|++| ++++|++|+++|+|||++++.+.+....+.+..+.||+|.+|++++.+  ||+|++
T Consensus        39 ~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~p~~~~  118 (126)
T cd03183          39 SPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPEAAGYDVFEGRPKLAAWRKRVKEAGNPLFDE  118 (126)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhcchhHHH
Confidence            44555677788999999999974 557899999999999999999888776666555779999999999999  999987


Q ss_pred             ccc
Q psy3752         169 SLT  171 (1012)
Q Consensus       169 ~lt  171 (1012)
                      ...
T Consensus       119 ~~~  121 (126)
T cd03183         119 AHK  121 (126)
T ss_pred             HHH
Confidence            543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio

>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=99.02  E-value=6.5e-10  Score=107.30  Aligned_cols=105  Identities=22%  Similarity=0.302  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccC--CCcccCCCcCHHHHHHHHHhhhh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDVVIAPLLWRL  139 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~--~~fL~Gd~~TlADi~l~~~L~~l  139 (1012)
                      +|++.+.|...++ .+...++.....     ++..+...+.+.+.|..+|+.|++  ++|++|+++|+||+++++++.++
T Consensus         2 ~ra~~r~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~   75 (124)
T cd03184           2 EKAQQKLLLERFS-KVVSAFYKLLGA-----PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERL   75 (124)
T ss_pred             hHHHHHHHHHHHh-hhhHHHHHHHhc-----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHH
Confidence            5888888877775 444444433322     222345667888999999999975  89999999999999999998877


Q ss_pred             hhccc-----cccCCCchhHHHHHHHhcCCccccccch
Q psy3752         140 DYYGI-----NLSKSASPLIKYAERIFSRPSYMESLTP  172 (1012)
Q Consensus       140 ~~~~~-----~l~~~~P~L~aw~~ri~~rp~~~~~lt~  172 (1012)
                      ...+.     ...+.+|+|.+|+++|.++|++++++.+
T Consensus        76 ~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~  113 (124)
T cd03184          76 EALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTD  113 (124)
T ss_pred             HHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCC
Confidence            54432     1246699999999999999999988763

The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re

>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=98.99  E-value=1.2e-09  Score=99.90  Aligned_cols=72  Identities=26%  Similarity=0.458  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccccc-CCCchhHHHHHHHhcCC
Q psy3752          93 IKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLS-KSASPLIKYAERIFSRP  164 (1012)
Q Consensus        93 ~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~-~~~P~L~aw~~ri~~rp  164 (1012)
                      .+..+.....+.+.|+.+|+.|.+++|++|+++|+||+++++.+.++...+.... +.||+|.+|+++|.+||
T Consensus        23 ~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~P   95 (95)
T PF00043_consen   23 EEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFARP   95 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHcCC
Confidence            3345667788999999999999999999999999999999999999988887776 78999999999999997

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=98.99  E-value=8.7e-10  Score=98.75  Aligned_cols=53  Identities=25%  Similarity=0.488  Sum_probs=50.4

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP   53 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~   53 (1012)
                      |+|+.+.+|+.++++||+++||.|+||+|+++|.+|+||.+|++||+++++.+
T Consensus        37 i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~   89 (91)
T cd03061          37 VVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP   89 (91)
T ss_pred             CceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence            68999999999999999999999999999999999999999999999999754

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>CHL00098 tsf elongation factor Ts

Probab=98.98  E-value=6.5e-10  Score=113.92  Aligned_cols=68  Identities=35%  Similarity=0.494  Sum_probs=57.5

Q ss_pred             EEeecCCeeeeeccC-CceEEEEEecCCc------h---HHHHHHHHHHhcc-CCcccCCcCCChHHHHHHHHHHHHHH
Q psy3752         529 KLFKTNNNLISYLHD-NKIGVIVEYNGDN------E---SAVKDVAMHIAAM-KPIALSSDQIPKKIIEKEYSLAVLKA  596 (1012)
Q Consensus       529 ~~~~~g~~i~~y~H~-~~~g~~v~~~~~~------~---~~~~~~amhi~a~-~p~~~~~~~v~~~~i~~ek~i~v~K~  596 (1012)
                      .|...++.+++|+|. |++||||++++..      +   ++|++|||||||| +|.|+++++||++++++|++++..++
T Consensus        50 ~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfVArn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~  128 (200)
T CHL00098         50 TRITTEGLIESYIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKD  128 (200)
T ss_pred             ccccccCeEEEEEecCCCEEEEEEEecCcccccccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHH
Confidence            344444569999996 7999999998742      2   5799999999999 79999999999999999999887775

>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress

Probab=98.97  E-value=1.6e-09  Score=106.37  Aligned_cols=109  Identities=12%  Similarity=0.121  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHH-HHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHHHHhhh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGY-KRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIAPLLWR  138 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~~~L~~  138 (1012)
                      +.+++++++..+.+.. ..++.......+...+.. ......+.+.|..||++|+  +++|++|+++|+||+++++.+.+
T Consensus         3 e~a~iD~i~~~v~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~   81 (137)
T cd03208           3 ERALIDMYVEGTADLM-EMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILM   81 (137)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHH
Confidence            5677888866665433 222222221111111111 2223456789999999998  77899999999999999999988


Q ss_pred             hhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         139 LDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       139 l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +..........||+|.+|++++.++|++++.+.
T Consensus        82 ~~~~~~~~l~~~P~l~~~~~rv~~~P~vk~~~~  114 (137)
T cd03208          82 VEELDPSLLSDFPLLQAFKTRISNLPTIKKFLQ  114 (137)
T ss_pred             HHHhchhhhccChHHHHHHHHHHcCHHHHHHHh
Confidence            765444444679999999999999999998765

The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS

>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress

Probab=98.96  E-value=2.4e-09  Score=102.79  Aligned_cols=107  Identities=13%  Similarity=0.126  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDY  141 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~  141 (1012)
                      ++++++++...+.+.. ..+........  .....+.....+.+.|..||++|++++||+|+++|+||+++++.+.|+..
T Consensus         2 e~~~id~~~~~~~d~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~   78 (121)
T cd03209           2 ERIRVDMLEQQAMDLR-MGLARICYSPD--FEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRI   78 (121)
T ss_pred             chHHHHHHHHHHHHHH-HHHHHhhcCcc--hHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHH
Confidence            4678888866655432 22222212111  12333456677889999999999989999999999999999999988875


Q ss_pred             ccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         142 YGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       142 ~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      .+....+.||+|.+|++++.++|++++.+.
T Consensus        79 ~~~~~~~~~P~l~~~~~rv~~~p~vk~~~~  108 (121)
T cd03209          79 FEPDCLDAFPNLKDFLERFEALPKISAYMK  108 (121)
T ss_pred             hCccccccChHHHHHHHHHHHCHHHHHHHh
Confidence            443445679999999999999999998765

The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m

>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene

Probab=98.95  E-value=2.4e-09  Score=98.24  Aligned_cols=95  Identities=12%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             HHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccC
Q psy3752          43 NEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLG  122 (1012)
Q Consensus        43 l~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~G  122 (1012)
                      +|||++.   ..|+|.++.+++.+++|+..+...+..        .          ...++.+.+..+|++|++++|++|
T Consensus         1 ~r~~~~~---~~~~~~~~~~~~~vd~~~d~~~~~l~~--------~----------~~~~~~~~l~~le~~L~~~~fl~G   59 (96)
T cd03200           1 ARFLYRL---LGPAPNAPNAATNIDSWVDTAIFQLAE--------G----------SSKEKAAVLRALNSALGRSPWLVG   59 (96)
T ss_pred             CchHHHH---hcccCCCchHHHHHHHHHHHHHHHHhc--------C----------CHHHHHHHHHHHHHHHcCCCccCC
Confidence            4799998   259999999999999997654423220        0          124455788899999999999999


Q ss_pred             CCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhc
Q psy3752         123 DEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFS  162 (1012)
Q Consensus       123 d~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~  162 (1012)
                      +++|+|||++++.+.+.   +... +.||+|.+|++||.+
T Consensus        60 d~~tiADi~l~~~l~~~---~~~~-~~~p~l~~w~~r~~~   95 (96)
T cd03200          60 SEFTVADIVSWCALLQT---GLAS-AAPANVQRWLKSCEN   95 (96)
T ss_pred             CCCCHHHHHHHHHHHHc---cccc-ccChHHHHHHHHHHh
Confidence            99999999999888653   3322 468999999999975

Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.

>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins

Probab=98.95  E-value=1.6e-09  Score=104.54  Aligned_cols=77  Identities=17%  Similarity=0.346  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHhcccC----------------CCcccCCCcCHHHHHHHHHhhhhhh-----ccccccCCCchhHH
Q psy3752          97 KRAREEIRDRLITLAPLFLK----------------NKYMLGDEFSMLDVVIAPLLWRLDY-----YGINLSKSASPLIK  155 (1012)
Q Consensus        97 ~~~~~~l~~~L~~Le~~L~~----------------~~fL~Gd~~TlADi~l~~~L~~l~~-----~~~~l~~~~P~L~a  155 (1012)
                      +.....+...|..||.+|.+                ++||+|+++|+|||++++.+.++..     .++++...||+|.+
T Consensus        28 e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~a  107 (134)
T cd03198          28 ENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLWR  107 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHHH
Confidence            55667888999999999976                6799999999999999999887643     25565567999999


Q ss_pred             HHHHHhcCCccccccchhh
Q psy3752         156 YAERIFSRPSYMESLTPAE  174 (1012)
Q Consensus       156 w~~ri~~rp~~~~~lt~~~  174 (1012)
                      |+++|.+||+|++++. .+
T Consensus       108 w~~ri~aRPsfk~t~~-~~  125 (134)
T cd03198         108 YLKNAYQREEFTNTCP-AD  125 (134)
T ss_pred             HHHHHHCCHHHHHHcC-CH
Confidence            9999999999999887 44

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T

>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant

Probab=98.95  E-value=2.9e-09  Score=102.14  Aligned_cols=74  Identities=22%  Similarity=0.448  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHhcccC-CCcccCCCcCHHHHHHHHHhhhhhhc-----cccccCCCchhHHHHHHHhcCCccccccc
Q psy3752          98 RAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWRLDYY-----GINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus        98 ~~~~~l~~~L~~Le~~L~~-~~fL~Gd~~TlADi~l~~~L~~l~~~-----~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ...+.+.+.|..||.+|++ ++||+||++|+||+++++++.++...     ++.+.+.+|+|.+|+++|.+||+|+++++
T Consensus        30 ~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~~  109 (121)
T cd03201          30 GTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTKA  109 (121)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcCC
Confidence            3456788899999999984 79999999999999999987666532     33344679999999999999999999887

DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.

>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.2e-09  Score=113.00  Aligned_cols=144  Identities=18%  Similarity=0.293  Sum_probs=110.3

Q ss_pred             CCCccEEEeCC---EeeccHHHHHHHHhhhCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHH
Q psy3752          23 YGQVPILVERD---LILYESNIINEYIDERFP-----YPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIK   94 (1012)
Q Consensus        23 ~gkVPvL~ddg---~~I~ES~aIl~YL~~~~p-----~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (1012)
                      .-+||||.|..   .+=.||..|++-+...|.     ...|||.+  -|.+++.+..++.+.+-...+..   +....++
T Consensus       127 RvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~---GFA~tq~  201 (324)
T COG0435         127 RVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKA---GFATTQE  201 (324)
T ss_pred             ceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeee---cccchHH
Confidence            45699999843   455699999999987764     24588864  46788888776665543333333   2234456


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-------cccccCCCchhHHHHHHHhcCCccc
Q psy3752          95 GYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-------GINLSKSASPLIKYAERIFSRPSYM  167 (1012)
Q Consensus        95 ~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-------~~~l~~~~P~L~aw~~ri~~rp~~~  167 (1012)
                      ..+++...+-..|+.||+.|+++.||+||++|-||+-+|+.|.+++..       +..-...||+|..|...+.+.|+|.
T Consensus       202 aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~  281 (324)
T COG0435         202 AYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFA  281 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccc
Confidence            677788888899999999999999999999999999999999777532       2222345999999999999999999


Q ss_pred             cccc
Q psy3752         168 ESLT  171 (1012)
Q Consensus       168 ~~lt  171 (1012)
                      .++.
T Consensus       282 ~T~d  285 (324)
T COG0435         282 ETVD  285 (324)
T ss_pred             cccc
Confidence            9987

>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=98.93  E-value=2.1e-09  Score=103.38  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh---ccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYMLEN---ERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR  138 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~  138 (1012)
                      +|+++++|+.+....+.+.+.....   ...+......+.....+.+.|+.+|+.|++++||+|+++|+||+++++.+.+
T Consensus         1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~   80 (123)
T cd03181           1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLL   80 (123)
T ss_pred             ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHH
Confidence            3678888887776666554322111   1122333445667788899999999999999999999999999999999988


Q ss_pred             hhhcccc--ccCCCchhHHHHHHHhcCCccccccc
Q psy3752         139 LDYYGIN--LSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       139 l~~~~~~--l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +.....+  ..+.+|++.+|++++.++|+|++++.
T Consensus        81 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~  115 (123)
T cd03181          81 GFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFG  115 (123)
T ss_pred             HHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcC
Confidence            7433322  23568999999999999999998766

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role

>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs

Probab=98.93  E-value=1.8e-09  Score=102.47  Aligned_cols=107  Identities=23%  Similarity=0.257  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccccHHHHHHHHHHHHHHHHHHHhccc-CCCcccCCCcCHHHHHHHHH
Q psy3752          60 PLMRARARLMLLNFEKEIFIHLYMLENE---RNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAPL  135 (1012)
Q Consensus        60 ~~era~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~Le~~L~-~~~fL~Gd~~TlADi~l~~~  135 (1012)
                      |.+|+++++|+.++...+.+........   .........+...+.+.+.+..+|..|+ +++||+| +||+||+++++.
T Consensus         1 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~   79 (114)
T cd03195           1 PRQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALM   79 (114)
T ss_pred             CHhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHH
Confidence            3578999999988888876542221100   0011111224556777888888999985 5589999 599999999999


Q ss_pred             hhhhhhccccccCCCchhHHHHHHHhcCCcccccc
Q psy3752         136 LWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL  170 (1012)
Q Consensus       136 L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~l  170 (1012)
                      +.|+...++++.   |++.+|.+||.+||+|++.+
T Consensus        80 ~~~~~~~g~~l~---p~l~ay~~r~~~rPa~~~~~  111 (114)
T cd03195          80 LNRLVLNGDPVP---ERLRDYARRQWQRPSVQAWL  111 (114)
T ss_pred             HHHHHHcCCCCC---HHHHHHHHHHHCCHHHHHHH
Confidence            999988888873   99999999999999998754

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.

>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=98.92  E-value=2.9e-09  Score=99.62  Aligned_cols=75  Identities=23%  Similarity=0.439  Sum_probs=63.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhcccCC----------CcccCCCcCHHHHHHHHHhhhhhhccccc----cCCCchhHHHH
Q psy3752          92 SIKGYKRAREEIRDRLITLAPLFLKN----------KYMLGDEFSMLDVVIAPLLWRLDYYGINL----SKSASPLIKYA  157 (1012)
Q Consensus        92 ~~~~~~~~~~~l~~~L~~Le~~L~~~----------~fL~Gd~~TlADi~l~~~L~~l~~~~~~l----~~~~P~L~aw~  157 (1012)
                      +....+....++.+.|..||++|.++          +||+|++||+|||++++.+.|+...+++.    ...||+|.+|+
T Consensus        23 ~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~  102 (111)
T cd03204          23 NVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYF  102 (111)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHH
Confidence            34455677888999999999999765          49999999999999999999887666554    25699999999


Q ss_pred             HHHhcCCcc
Q psy3752         158 ERIFSRPSY  166 (1012)
Q Consensus       158 ~ri~~rp~~  166 (1012)
                      +||.+||+|
T Consensus       103 ~rv~aRpsf  111 (111)
T cd03204         103 ERVLQRESF  111 (111)
T ss_pred             HHHHcCCCC
Confidence            999999986

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress

Probab=98.87  E-value=6.9e-09  Score=100.41  Aligned_cols=106  Identities=17%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccC---CCcccCCCcCHHHHHHHHHhhh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK---NKYMLGDEFSMLDVVIAPLLWR  138 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~---~~fL~Gd~~TlADi~l~~~L~~  138 (1012)
                      ++++++++...+.+ +...+........   ....+.....+.+.|..||++|++   ++||+|+++|+||+++++.+.|
T Consensus         3 e~~~vd~~~~~~~d-~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~   78 (126)
T cd03210           3 EAALIDMVNDGVED-LRLKYVRMIYQNY---EAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDI   78 (126)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHH
Confidence            56778877555543 3333222221111   122244556788999999999974   5899999999999999999988


Q ss_pred             hhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         139 LDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       139 l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +........+.||+|.+|+++|.++|+|++.+.
T Consensus        79 ~~~~~~~~~~~~P~l~~~~~rv~~~p~v~~~~~  111 (126)
T cd03210          79 HLVLAPGCLDAFPLLKAFVERLSARPKLKAYLE  111 (126)
T ss_pred             HHHhChHhhhcChHHHHHHHHHHhCcHHHHHHh
Confidence            765433335679999999999999999998765

The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre

>PRK12332 tsf elongation factor Ts; Reviewed

Probab=98.86  E-value=4e-09  Score=108.25  Aligned_cols=70  Identities=36%  Similarity=0.517  Sum_probs=57.6

Q ss_pred             EEEeecCCeeeeeccC-CceEEEEEecCC------ch---HHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHHH
Q psy3752         528 FKLFKTNNNLISYLHD-NKIGVIVEYNGD------NE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQ  597 (1012)
Q Consensus       528 f~~~~~g~~i~~y~H~-~~~g~~v~~~~~------~~---~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~~  597 (1012)
                      .-|....+-|++|+|+ |+.|+||++.+.      ++   .++++||||||||+|.|+++++||++++++|++++..++.
T Consensus        52 ~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFVa~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~  131 (198)
T PRK12332         52 AGRVAAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQAL  131 (198)
T ss_pred             ccccccCceEEEEEecCCCEEEEEEEeccCCccccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHH
Confidence            3444444459999996 799999977653      32   4799999999999999999999999999999998887763

>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs

Probab=98.82  E-value=6.6e-09  Score=96.14  Aligned_cols=69  Identities=17%  Similarity=0.264  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCcc
Q psy3752          97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY  166 (1012)
Q Consensus        97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~  166 (1012)
                      +....++.+.++.+|+.|++++|++|+++|+||+++++++.+....+.. ...+|+|.+|++++.++|+|
T Consensus        32 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~p~~  100 (100)
T cd03206          32 ETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPEGGVD-LEDYPAIRRWLARIEALPGF  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhccCCC-hhhCcHHHHHHHHHHhCcCC
Confidence            4567789999999999999999999999999999999998765544433 35699999999999999986

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=98.79  E-value=9.6e-09  Score=89.66  Aligned_cols=53  Identities=36%  Similarity=0.720  Sum_probs=50.0

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP   53 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~   53 (1012)
                      |+|+.+.++...++++|.+.||.|+||+|++||.+++||.+|++||+++||++
T Consensus        22 i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~   74 (75)
T PF13417_consen   22 IPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP   74 (75)
T ss_dssp             EEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred             CeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence            57999999988889999999999999999999999999999999999999864

...

>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs

Probab=98.79  E-value=8.7e-09  Score=95.98  Aligned_cols=99  Identities=16%  Similarity=0.121  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYML-----ENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL  136 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L  136 (1012)
                      +|+++++|+.+....+.+.+...     ..+......+..+....++.+.++.||..|++++|++|+++|+|||++++.+
T Consensus         2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~   81 (105)
T cd03179           2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT   81 (105)
T ss_pred             cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence            47888998766555444332111     0112333445556778889999999999998889999999999999999999


Q ss_pred             hhhhhccccccCCCchhHHHHHHHh
Q psy3752         137 WRLDYYGINLSKSASPLIKYAERIF  161 (1012)
Q Consensus       137 ~~l~~~~~~l~~~~P~L~aw~~ri~  161 (1012)
                      .++...+.+ ...+|+|.+|+++++
T Consensus        82 ~~~~~~~~~-~~~~p~l~~~~~~~~  105 (105)
T cd03179          82 HVADEGGFD-LADYPAIRAWLARIE  105 (105)
T ss_pred             HhccccCCC-hHhCccHHHHHHhhC
Confidence            988766665 456999999999874

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.

>KOG4244|consensus

Probab=98.78  E-value=4.4e-08  Score=101.66  Aligned_cols=153  Identities=20%  Similarity=0.297  Sum_probs=101.5

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH   80 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~   80 (1012)
                      ||||.+.-       ++...++.|++|.++.+|+.+.||..|..+|.++|.-+..+|  +.++++.+.+....+..++..
T Consensus        76 IpYE~~~~-------~~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~--~e~~a~s~Al~rm~dnhL~~~  146 (281)
T KOG4244|consen   76 IPYEIVDC-------SLKRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLS--AEQRAQSRALSRMADNHLFWI  146 (281)
T ss_pred             CCceeccc-------cceeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHHHHHHHHH
Confidence            46665533       233568899999999999999999999999999997444233  345555544422222221111


Q ss_pred             HHHh----------------------------h----hccc-------cccHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q psy3752          81 LYML----------------------------E----NERN-------KTSIKGYKRAREEIRDRLITLAPLFLKNKYML  121 (1012)
Q Consensus        81 ~~~~----------------------------~----~~~~-------~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~  121 (1012)
                      +...                            .    ..+.       .-..-..++..+.+.+.|..++..|++++||.
T Consensus       147 l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg~Kkflf  226 (281)
T KOG4244|consen  147 LLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAEIDELLHRDLRAISDYLGDKKFLF  226 (281)
T ss_pred             HHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            1000                            0    0000       00000113345667889999999999999999


Q ss_pred             CCCcCHHHHHHHHHhhhhhhcccc------ccCCCchhHHHHHHHhcC
Q psy3752         122 GDEFSMLDVVIAPLLWRLDYYGIN------LSKSASPLIKYAERIFSR  163 (1012)
Q Consensus       122 Gd~~TlADi~l~~~L~~l~~~~~~------l~~~~P~L~aw~~ri~~r  163 (1012)
                      |+++|-+|+++|+.|..+.+ ++.      +..++|+|..|.+|+++.
T Consensus       227 Gdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~p~l~eYceRIr~~  273 (281)
T KOG4244|consen  227 GDKITPADATVFGQLAQVYY-PFRSHISDLLEGDFPNLLEYCERIRKE  273 (281)
T ss_pred             CCCCCcceeeehhhhhheec-cCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence            99999999999999977654 321      346799999999999864

>KOG2903|consensus

Probab=98.77  E-value=4.7e-09  Score=107.54  Aligned_cols=146  Identities=18%  Similarity=0.235  Sum_probs=108.6

Q ss_pred             CCCccEEEeC---CEeeccHHHHHHHHhhhC---------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3752          23 YGQVPILVER---DLILYESNIINEYIDERF---------PYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNK   90 (1012)
Q Consensus        23 ~gkVPvL~dd---g~~I~ES~aIl~YL~~~~---------p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~   90 (1012)
                      .-+||||-|-   ..+=.||..|++.+...|         +.-.|+|.  .-+++++.+..++.+.+-...+....   .
T Consensus       121 rfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~--~L~~~Ide~N~wvy~~INNGVYk~GF---A  195 (319)
T KOG2903|consen  121 RFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS--SLRAQIDETNSWVYDKINNGVYKCGF---A  195 (319)
T ss_pred             eEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH--HHHHHHhhhhceecccccCceeeecc---c
Confidence            3469999974   356679999999999433         33457875  45778888877766655444443332   2


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccCCC--cccCCCcCHHHHHHHHHhhhhhhc-------cc-cccCCCchhHHHHHHH
Q psy3752          91 TSIKGYKRAREEIRDRLITLAPLFLKNK--YMLGDEFSMLDVVIAPLLWRLDYY-------GI-NLSKSASPLIKYAERI  160 (1012)
Q Consensus        91 ~~~~~~~~~~~~l~~~L~~Le~~L~~~~--fL~Gd~~TlADi~l~~~L~~l~~~-------~~-~l~~~~P~L~aw~~ri  160 (1012)
                      ...+.++...+++-+.|+.+|+.|+++.  |+||+++|-||+-+|+.+-+++..       .. .+.++||+|..|..++
T Consensus       196 ~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~i  275 (319)
T KOG2903|consen  196 EKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNI  275 (319)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHH
Confidence            3345567777888889999999999876  999999999999999988666432       11 2456899999999999


Q ss_pred             hc-CCccccccchhh
Q psy3752         161 FS-RPSYMESLTPAE  174 (1012)
Q Consensus       161 ~~-rp~~~~~lt~~~  174 (1012)
                      .. .|+|..+.. ++
T Consensus       276 Y~~~~~~~~Ttd-~~  289 (319)
T KOG2903|consen  276 YWNIPGFSSTTD-FN  289 (319)
T ss_pred             Hhhccchhhccc-hh
Confidence            98 899998876 44

>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B

Probab=98.75  E-value=1.6e-08  Score=86.62  Aligned_cols=65  Identities=31%  Similarity=0.584  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccc--cccCCCchhHHHHHH
Q psy3752          95 GYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGI--NLSKSASPLIKYAER  159 (1012)
Q Consensus        95 ~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~--~l~~~~P~L~aw~~r  159 (1012)
                      ..+...+.+.+.|+.||.+|++++|++|++||+||+++++++.++...+.  ++...+|+|.+|++|
T Consensus         3 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r   69 (69)
T PF13410_consen    3 AVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER   69 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence            44677888999999999999999999999999999999999999987754  345789999999986

...

>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs

Probab=98.71  E-value=3.5e-08  Score=93.64  Aligned_cols=66  Identities=26%  Similarity=0.510  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhc---ccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCcccccc
Q psy3752         101 EEIRDRLITLAPL---FLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL  170 (1012)
Q Consensus       101 ~~l~~~L~~Le~~---L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~l  170 (1012)
                      +.+.+.+..+|..   +++++||+|+ +|+||+++++++.|....+.++   .|+|.+|++++.+||+|++.+
T Consensus        44 ~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~~~---~P~l~~~~~rv~~rPsv~~~~  112 (114)
T cd03194          44 ADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYGLPL---SPAAQAYVDALLAHPAMQEWI  112 (114)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHCCHHHHHHH
Confidence            3344444444444   4577899999 9999999999998887665543   399999999999999998754

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.

>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.71  E-value=1.6e-08  Score=93.93  Aligned_cols=73  Identities=23%  Similarity=0.365  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752          97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus        97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +....++.+.++.+|++|++++|++|+++|+|||++++.+.|+...+.  ...+|+|.+|++++++||+|++++.
T Consensus        29 ~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~  101 (103)
T cd03207          29 MAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFGL--LPERPAFDAYIARITDRPAFQRAAA  101 (103)
T ss_pred             hhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcCC--CCCChHHHHHHHHHHcCHHHHHHhc
Confidence            455677899999999999999999999999999999999988765542  4569999999999999999987653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=98.70  E-value=2.6e-08  Score=86.25  Aligned_cols=50  Identities=58%  Similarity=1.020  Sum_probs=46.8

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF   50 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~   50 (1012)
                      ++|+.+.+++...+++|+++||.|+||+|+++|..++||.+|++||+++|
T Consensus        24 i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~   73 (73)
T cd03059          24 VSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF   73 (73)
T ss_pred             CccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence            68999999988888999999999999999999999999999999999875

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=98.70  E-value=2.2e-08  Score=86.86  Aligned_cols=47  Identities=30%  Similarity=0.552  Sum_probs=42.8

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.+++..   +++||+++||.|+||+|++||.+++||.+|++||+
T Consensus        24 l~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe   73 (73)
T cd03052          24 LRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE   73 (73)
T ss_pred             CCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence            589999998753   56899999999999999999999999999999985

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.68  E-value=2.9e-08  Score=87.02  Aligned_cols=51  Identities=37%  Similarity=0.591  Sum_probs=46.1

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeC-CEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVER-DLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL~~~~p   51 (1012)
                      ++|+.+.++..+   ++++|+++||.|++|+|+++ |..++||.+|++||+++||
T Consensus        23 i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p   77 (77)
T cd03057          23 LPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP   77 (77)
T ss_pred             CCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence            589999998865   47899999999999999976 8999999999999999986

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.65  E-value=4.7e-08  Score=85.38  Aligned_cols=51  Identities=35%  Similarity=0.623  Sum_probs=46.4

Q ss_pred             CceEEEEecCC---CCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~---~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      ++|+.+.+++.   .++++|++.||.++||+|+++|.+++||.+|++||+++||
T Consensus        23 i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~   76 (76)
T cd03046          23 LPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG   76 (76)
T ss_pred             CCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence            58999999875   3678999999999999999999999999999999999885

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=98.63  E-value=5.3e-08  Score=85.18  Aligned_cols=50  Identities=36%  Similarity=0.623  Sum_probs=45.0

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF   50 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~   50 (1012)
                      ++|+.+.+++.+   ..++|.++||.|+||+|+++|.+++||.||++||+++|
T Consensus        24 ~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~   76 (76)
T cd03050          24 IPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF   76 (76)
T ss_pred             CCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence            589999998765   35789999999999999999999999999999999875

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.62  E-value=5.8e-08  Score=84.43  Aligned_cols=50  Identities=36%  Similarity=0.563  Sum_probs=46.2

Q ss_pred             CceEEEEecCCCCCchhhhcCCC-CCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPY-GQVPILVERDLILYESNIINEYIDERF   50 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~-gkVPvL~ddg~~I~ES~aIl~YL~~~~   50 (1012)
                      ++|+.+.+++..++++|+++||. |+||+|++||.+++||.+|++||+++|
T Consensus        24 l~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~   74 (74)
T cd03058          24 VPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW   74 (74)
T ss_pred             CCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence            68999999988788999999995 999999999999999999999999875

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=98.60  E-value=7.1e-08  Score=85.48  Aligned_cols=51  Identities=29%  Similarity=0.693  Sum_probs=46.0

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeC---CEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVER---DLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~dd---g~~I~ES~aIl~YL~~~~p   51 (1012)
                      ++|+.+.+++..   ++++|+++||.|+||+|+++   |.+|+||.+|++||+++|+
T Consensus        24 l~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~   80 (81)
T cd03048          24 LPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD   80 (81)
T ss_pred             CCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence            689999998753   56899999999999999987   8999999999999999986

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=98.59  E-value=7.9e-08  Score=84.07  Aligned_cols=48  Identities=31%  Similarity=0.582  Sum_probs=42.3

Q ss_pred             CceEEEEecCCC---CCchhhhcCCC-CCccEEEeC-CEeeccHHHHHHHHhh
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPY-GQVPILVER-DLILYESNIINEYIDE   48 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~-gkVPvL~dd-g~~I~ES~aIl~YL~~   48 (1012)
                      ++|+.+.+++..   ++++|++.||. |+||+|+++ |.+++||.||++||++
T Consensus        24 v~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~   76 (76)
T PF02798_consen   24 VEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR   76 (76)
T ss_dssp             --EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred             ccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence            589999999855   34999999999 999999998 9999999999999985

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.57  E-value=5.3e-08  Score=84.49  Aligned_cols=49  Identities=20%  Similarity=0.329  Sum_probs=43.9

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER   49 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~   49 (1012)
                      ++|+.+.+++..+.++|+++||.|+||+|++||.+++||.||++||+++
T Consensus        25 i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~   73 (73)
T cd03076          25 ISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK   73 (73)
T ss_pred             CCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence            5899999987556678999999999999999999999999999999863

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha

Probab=98.56  E-value=2e-07  Score=86.75  Aligned_cols=98  Identities=21%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc--cccHHHHHHHHHHHHHHHHHHHhcccC--CCcccCCCcCHHHHHHHHHhh
Q psy3752          62 MRARARLMLLNFEKEIFIHLYMLENERN--KTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDVVIAPLLW  137 (1012)
Q Consensus        62 era~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~Le~~L~~--~~fL~Gd~~TlADi~l~~~L~  137 (1012)
                      ++++++++...+. .+...+........  ...........+.+.+.+..||++|.+  ++|++|+++|+||+++++++.
T Consensus         2 e~~~v~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~   80 (104)
T cd03192           2 EAARVDALVDTIA-DLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLD   80 (104)
T ss_pred             hHHHHHHHHHHHH-HHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence            4677888766543 33333332222111  112333455677888999999999987  899999999999999999998


Q ss_pred             hhhhccccc-cCCCchhHHHHHHH
Q psy3752         138 RLDYYGINL-SKSASPLIKYAERI  160 (1012)
Q Consensus       138 ~l~~~~~~l-~~~~P~L~aw~~ri  160 (1012)
                      ++...+... ...||+|.+|++++
T Consensus        81 ~~~~~~~~~~~~~~p~l~~~~~~~  104 (104)
T cd03192          81 YLLYLDPKLLLKKYPKLKALRERV  104 (104)
T ss_pred             HHHhhCchhhHHhChhHHHHHHhC
Confidence            887665443 56799999999875

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition

>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B

Probab=98.55  E-value=5.2e-08  Score=89.95  Aligned_cols=64  Identities=23%  Similarity=0.409  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHhcccCCC--cccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhc
Q psy3752          97 KRAREEIRDRLITLAPLFLKNK--YMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFS  162 (1012)
Q Consensus        97 ~~~~~~l~~~L~~Le~~L~~~~--fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~  162 (1012)
                      +....++.+.|..++++|+.++  ||+|++||+||+++|+.|..+...  ++.+.+|+|.+|++||++
T Consensus        34 ~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~--~~~~~~p~L~~w~~ri~~   99 (99)
T PF14497_consen   34 DFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA--DFPKDYPNLVRWYERIEE   99 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC--HHTTTCHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence            4566788999999999998776  999999999999999999666533  333679999999999974

...

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.55  E-value=1.1e-07  Score=82.65  Aligned_cols=48  Identities=27%  Similarity=0.643  Sum_probs=43.4

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDE   48 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~   48 (1012)
                      ++|+.+.+++.+   ..++|+++||.|+||+|+++|.+|+||.||++||++
T Consensus        24 i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~   74 (74)
T cd03045          24 LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE   74 (74)
T ss_pred             CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence            589999998754   458999999999999999999999999999999975

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=98.52  E-value=1.8e-07  Score=90.15  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHHHHhc
Q psy3752          97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFS  162 (1012)
Q Consensus        97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~ri~~  162 (1012)
                      +.....+.+.|+.+|++|++++|++|+++|+||+++++.+.+.... +.++.+.+|+|.+|++||.+
T Consensus        57 ~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~  123 (124)
T cd03202          57 EAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLD  123 (124)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhc
Confidence            4566788999999999999999999999999999999999888764 55555679999999999976

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=98.50  E-value=1.5e-07  Score=82.08  Aligned_cols=48  Identities=33%  Similarity=0.536  Sum_probs=43.3

Q ss_pred             CceEEEEecCC--CCCchhhhcCCCCCccEEEe-CCEeeccHHHHHHHHhh
Q psy3752           1 MDFEIRDIDLF--NKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDE   48 (1012)
Q Consensus         1 I~ye~~~Vd~~--~~~~~~~~inP~gkVPvL~d-dg~~I~ES~aIl~YL~~   48 (1012)
                      ++|+.+.+++.  .++++|+++||.|++|+|++ +|.+|+||.||++||++
T Consensus        24 i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~   74 (75)
T cd03044          24 LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN   74 (75)
T ss_pred             CceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence            58999999986  36789999999999999996 58999999999999986

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=98.50  E-value=1.9e-07  Score=81.62  Aligned_cols=49  Identities=39%  Similarity=0.740  Sum_probs=43.8

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER   49 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~   49 (1012)
                      ++|+.+.+++..   .+++|.++||.|+||+|+++|..++||.||++||+++
T Consensus        25 i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~   76 (76)
T cd03053          25 VDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK   76 (76)
T ss_pred             CCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence            578998888753   5689999999999999999999999999999999864

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.50  E-value=1.7e-07  Score=83.34  Aligned_cols=50  Identities=20%  Similarity=0.345  Sum_probs=41.1

Q ss_pred             CceEEEEecCCCC----Cchhhhc-----CCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752           1 MDFEIRDIDLFNK----PDNIFRM-----NPYGQVPILVERDLILYESNIINEYIDERF   50 (1012)
Q Consensus         1 I~ye~~~Vd~~~~----~~~~~~i-----nP~gkVPvL~ddg~~I~ES~aIl~YL~~~~   50 (1012)
                      ++|+.+.+++.+.    .++|.+.     +|+|+||+|++||.+|+||.||++||+++|
T Consensus        24 i~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~~   82 (82)
T cd03075          24 EKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARKH   82 (82)
T ss_pred             CCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhcC
Confidence            6899999998652    2445432     299999999999999999999999999875

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=98.48  E-value=2e-07  Score=80.37  Aligned_cols=46  Identities=33%  Similarity=0.569  Sum_probs=42.7

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeC-CEeeccHHHHHHHH
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVER-DLILYESNIINEYI   46 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL   46 (1012)
                      ++|+.+.+++..++++|+++||.|+||+|+++ |..++||.+|++|+
T Consensus        24 l~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~   70 (71)
T cd03060          24 ITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA   70 (71)
T ss_pred             CCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence            58999999998888999999999999999974 99999999999997

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.47  E-value=2.3e-07  Score=84.99  Aligned_cols=68  Identities=34%  Similarity=0.536  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccc--ccCCCchhHHHHHHH
Q psy3752          93 IKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN--LSKSASPLIKYAERI  160 (1012)
Q Consensus        93 ~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~--l~~~~P~L~aw~~ri  160 (1012)
                      ....+...+.+.+.++.||++|++++|++|+++|+||+++++++.++...+..  +.+.+|++.+|+++|
T Consensus        31 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~  100 (100)
T cd00299          31 EAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence            34456677889999999999999999999999999999999999998776554  246699999999875

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=98.45  E-value=2.7e-07  Score=79.33  Aligned_cols=49  Identities=37%  Similarity=0.707  Sum_probs=40.9

Q ss_pred             CceEEEEecC----CCCCchhhhcCCCCCccEEEe-CCEeeccHHHHHHHHhhh
Q psy3752           1 MDFEIRDIDL----FNKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDER   49 (1012)
Q Consensus         1 I~ye~~~Vd~----~~~~~~~~~inP~gkVPvL~d-dg~~I~ES~aIl~YL~~~   49 (1012)
                      |+|+...++.    ...+++|.++||.|+||+|++ +|.+++||.+|++||+++
T Consensus        17 l~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~   70 (70)
T PF13409_consen   17 LPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ   70 (70)
T ss_dssp             GTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred             CCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence            5788888844    235589999999999999997 789999999999999874

...

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=98.45  E-value=2.8e-07  Score=79.94  Aligned_cols=47  Identities=30%  Similarity=0.635  Sum_probs=42.6

Q ss_pred             CceEEEEecCCC--CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFN--KPDNIFRMNPYGQVPILVERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~--~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.+++..  ..++|+++||.|++|+|+++|.+++||.+|++||+
T Consensus        25 l~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~   73 (73)
T cd03043          25 IPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA   73 (73)
T ss_pred             CCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence            589999998765  45899999999999999999999999999999984

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.43  E-value=3.1e-07  Score=79.59  Aligned_cols=47  Identities=34%  Similarity=0.581  Sum_probs=41.7

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.++...   ..++|+++||.|+||+|+++|..|+||.||++||+
T Consensus        24 l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~   73 (73)
T cd03047          24 LPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA   73 (73)
T ss_pred             CCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence            578988887643   46889999999999999999999999999999985

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins

Probab=98.41  E-value=1e-06  Score=79.41  Aligned_cols=64  Identities=25%  Similarity=0.345  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccc------ccCCCchhHHHHHHHh
Q psy3752          98 RAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN------LSKSASPLIKYAERIF  161 (1012)
Q Consensus        98 ~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~------l~~~~P~L~aw~~ri~  161 (1012)
                      ....++.+.++.+|+.|++++|++|+++|+||+++++.+.++...+..      ..+.+|+|.+|++|+.
T Consensus        19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~   88 (88)
T cd03193          19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR   88 (88)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence            445778899999999999999999999999999999999877543221      1246999999999974

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=98.40  E-value=3.4e-07  Score=80.34  Aligned_cols=50  Identities=24%  Similarity=0.321  Sum_probs=42.9

Q ss_pred             CceEEEEecCCC-CCchhhhcCCCCCccEEEe--CCEeeccHHHHHHHHhhhC
Q psy3752           1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVE--RDLILYESNIINEYIDERF   50 (1012)
Q Consensus         1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~d--dg~~I~ES~aIl~YL~~~~   50 (1012)
                      |||+.+.++... ..++|++.||.|+||+|++  +|.+++||.+|++||+++|
T Consensus        25 i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~   77 (77)
T cd03041          25 LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY   77 (77)
T ss_pred             CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence            689998886543 4578999999999999997  4799999999999999875

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.38  E-value=5.1e-07  Score=78.04  Aligned_cols=47  Identities=30%  Similarity=0.592  Sum_probs=42.4

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.+++..   .+++|+++||.|++|+|+++|.+++||.+|++||+
T Consensus        24 ~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~   73 (73)
T cd03056          24 IPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA   73 (73)
T ss_pred             CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence            589999998753   56899999999999999999999999999999984

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.38  E-value=3.7e-07  Score=79.07  Aligned_cols=47  Identities=30%  Similarity=0.661  Sum_probs=42.9

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.++...++++|++.||.|+||+|+ +||..++||.||++||+
T Consensus        26 i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe   73 (73)
T cd03049          26 DDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD   73 (73)
T ss_pred             CCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence            579999998877789999999999999998 58899999999999985

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.38  E-value=5.1e-07  Score=78.04  Aligned_cols=47  Identities=36%  Similarity=0.564  Sum_probs=42.6

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.+++.+   ..++|+++||.|++|+|+++|.+++||.||++||+
T Consensus        24 i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~   73 (73)
T cd03042          24 LDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD   73 (73)
T ss_pred             CCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence            689999998753   56899999999999999999999999999999985

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=98.37  E-value=3.1e-07  Score=79.33  Aligned_cols=48  Identities=25%  Similarity=0.333  Sum_probs=42.0

Q ss_pred             CceEEEEecCCCC-CchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy3752           1 MDFEIRDIDLFNK-PDNIFRMNPYGQVPILVERDLILYESNIINEYIDE   48 (1012)
Q Consensus         1 I~ye~~~Vd~~~~-~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~   48 (1012)
                      +||+.+.+++... .++|.++||.|+||+|+++|.+++||.||++||++
T Consensus        24 i~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~   72 (72)
T cd03039          24 VEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR   72 (72)
T ss_pred             CCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence            6899999987653 34589999999999999999999999999999974

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=98.35  E-value=5.4e-07  Score=80.47  Aligned_cols=50  Identities=20%  Similarity=0.539  Sum_probs=43.2

Q ss_pred             CceEEEEecCCCCC---chhhhcCCCCCccEEEeC-CEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKP---DNIFRMNPYGQVPILVER-DLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~---~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL~~~~p   51 (1012)
                      ++|+.+.+++....   +++ ++||.|+||+|+++ |.+++||.+|++||+++||
T Consensus        31 i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p   84 (84)
T cd03038          31 LEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP   84 (84)
T ss_pred             CCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence            68999999876532   345 88999999999998 8999999999999999986

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.28  E-value=1.2e-06  Score=77.28  Aligned_cols=48  Identities=21%  Similarity=0.442  Sum_probs=39.9

Q ss_pred             CceEEEEecCCCCCchhhhcC-----CCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMN-----PYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~in-----P~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      ++|+.+.++..   ++|.+.|     |+|+||+|++||.+|+||.||++||+++|+
T Consensus        25 i~~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~   77 (79)
T cd03077          25 VEFEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN   77 (79)
T ss_pred             CCcEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence            58899988753   3444444     599999999999999999999999999986

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.27  E-value=1e-06  Score=79.59  Aligned_cols=47  Identities=43%  Similarity=0.687  Sum_probs=43.1

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeC-CEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVER-DLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.++...++++|.+.||.++||+|+++ |.+++||.||++||+
T Consensus        42 l~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe   89 (89)
T cd03055          42 IPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD   89 (89)
T ss_pred             CCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence            58999999987777889999999999999976 899999999999985

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.20  E-value=1.8e-06  Score=74.70  Aligned_cols=47  Identities=28%  Similarity=0.547  Sum_probs=41.4

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILV-ERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.+++..   ..++|.++||.|+||+|+ +||..++||.+|++||+
T Consensus        24 l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe   74 (74)
T cd03051          24 IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE   74 (74)
T ss_pred             CCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence            589999998754   467899999999999998 57899999999999985

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.15  E-value=9.4e-06  Score=74.70  Aligned_cols=69  Identities=23%  Similarity=0.288  Sum_probs=56.0

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc--cccccCCCchhHHHHHHH
Q psy3752          89 NKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY--GINLSKSASPLIKYAERI  160 (1012)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~--~~~l~~~~P~L~aw~~ri  160 (1012)
                      ........+.....+.+.|..+|++|++++|   +++|+|||++++.+.|....  +.++...||+|.+|+++|
T Consensus        28 ~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm   98 (98)
T cd03205          28 EKRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF   98 (98)
T ss_pred             hhhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence            3344455677788999999999999998898   89999999999999888643  333346799999999985

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=98.14  E-value=3.2e-06  Score=73.70  Aligned_cols=44  Identities=18%  Similarity=0.372  Sum_probs=38.2

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +||+.+.++.       .+.||.|+||+|+++|.+++||.+|++||+++|+
T Consensus        32 i~~~~~~~~~-------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~~   75 (75)
T cd03080          32 IPYENKFGGL-------AKRSPKGKLPFIELNGEKIADSELIIDHLEEKYG   75 (75)
T ss_pred             CCcEEeecCc-------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence            5677777654       3689999999999999999999999999999874

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=3.2e-05  Score=75.55  Aligned_cols=141  Identities=24%  Similarity=0.247  Sum_probs=89.0

Q ss_pred             CCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----------
Q psy3752          22 PYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSS-DPLMRARARLMLLNFEKEIFIHLYMLENER-----------   88 (1012)
Q Consensus        22 P~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~~~L~p~-~~~era~v~~~~~~~~~~~~~~~~~~~~~~-----------   88 (1012)
                      -..+||+|+ +||..+.||..|.+|+++.++.+-|-.. .|.-++..+....+.+..+++.+.....+.           
T Consensus        44 G~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~  123 (215)
T COG2999          44 GQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTGKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFT  123 (215)
T ss_pred             cccccceEEccccccchhhhHHHHHHHHhcCchhhccCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHH
Confidence            467899999 7899999999999999999875434432 343333333332223333333332221111           


Q ss_pred             --ccccH-------HHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHH
Q psy3752          89 --NKTSI-------KGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAE  158 (1012)
Q Consensus        89 --~~~~~-------~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~  158 (1012)
                        .+...       ........++...|+.++..+.+..=+- ..++.-|+.+||.|+++... |..|+   .++..|+.
T Consensus       124 ~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~Li~~~s~~n-~~l~~ddi~vFplLRnlt~v~gi~wp---s~v~dy~~  199 (215)
T COG2999         124 DKKEASEGSFESLLNHTAQYLKRIQADLRALDKLIVGPSAVN-GELSEDDILVFPLLRNLTLVAGIQWP---SRVADYRD  199 (215)
T ss_pred             hhhhhccccHHHHHhchHHHHHHHHHHHHHHHHHhcCcchhc-cccchhhhhhhHHhccceecccCCCc---HHHHHHHH
Confidence              11100       1113456678888888888776544233 36999999999999987644 55554   36999999


Q ss_pred             HHhcCCcc
Q psy3752         159 RIFSRPSY  166 (1012)
Q Consensus       159 ri~~rp~~  166 (1012)
                      +|.+...+
T Consensus       200 ~msektqV  207 (215)
T COG2999         200 NMSEKTQV  207 (215)
T ss_pred             HHHHhhCc
Confidence            99886654

>KOG3029|consensus

Probab=98.06  E-value=2e-05  Score=82.07  Aligned_cols=61  Identities=10%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhcc-cCCCcccCCCcCHHHHHHHHHhhhhhhcc--ccccCCCchhHHHHHHHhc
Q psy3752         101 EEIRDRLITLAPLF-LKNKYMLGDEFSMLDVVIAPLLWRLDYYG--INLSKSASPLIKYAERIFS  162 (1012)
Q Consensus       101 ~~l~~~L~~Le~~L-~~~~fL~Gd~~TlADi~l~~~L~~l~~~~--~~l~~~~P~L~aw~~ri~~  162 (1012)
                      ..+.+.++.+-..| .+++||.|++|++||+++|+.|..++...  -+... ..++..|+-+|++
T Consensus       291 e~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl~sm~gc~afkd~~q-~t~I~eW~~rmea  354 (370)
T KOG3029|consen  291 EHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVLRSMEGCQAFKDCLQ-NTSIGEWYYRMEA  354 (370)
T ss_pred             HHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhhhHhhhhhHHHHHHh-cchHHHHHHHHHH
Confidence            34444555444455 46899999999999999999998776542  12332 4789999999876

>KOG3027|consensus

Probab=98.04  E-value=4.3e-05  Score=76.31  Aligned_cols=141  Identities=19%  Similarity=0.200  Sum_probs=96.8

Q ss_pred             cCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH-----H--------HHhh
Q psy3752          20 MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS-SDPLMRARARLMLLNFEKEIFIH-----L--------YMLE   85 (1012)
Q Consensus        20 inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~L~p-~~~~era~v~~~~~~~~~~~~~~-----~--------~~~~   85 (1012)
                      ++|.|+||.|..|.++++|=.+|..+...+--  .|-. -+..+++.++..++.++..+...     +        +...
T Consensus        62 mSP~G~vPllr~g~~~~aef~pIV~fVeak~~--~l~s~lsE~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~  139 (257)
T KOG3027|consen   62 MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGV--TLTSWLSEDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTAL  139 (257)
T ss_pred             cCCCCCCceeeecchhhhhhhHHHHHHHHhcc--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhh
Confidence            48999999999999999999999999998852  2322 24455666665544443322100     0        0000


Q ss_pred             hcc-------------------------ccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhh
Q psy3752          86 NER-------------------------NKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD  140 (1012)
Q Consensus        86 ~~~-------------------------~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~  140 (1012)
                      ..+                         ...+....+...+++...+++|+.+|+.++||.|++||-+|..+|+.+..+.
T Consensus       140 R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytil  219 (257)
T KOG3027|consen  140 RYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTIL  219 (257)
T ss_pred             ccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhh
Confidence            000                         0111223355677888999999999999999999999999999999987765


Q ss_pred             hcccc------ccCCCchhHHHHHHHhc
Q psy3752         141 YYGIN------LSKSASPLIKYAERIFS  162 (1012)
Q Consensus       141 ~~~~~------l~~~~P~L~aw~~ri~~  162 (1012)
                      ...++      ..+.||+|.++..|+.+
T Consensus       220 Tt~Lpn~ela~~lkkys~LlefcrrIeq  247 (257)
T KOG3027|consen  220 TTRLPNMELANILKKYSNLLEFCRRIEQ  247 (257)
T ss_pred             hhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence            43322      23569999999999875

>KOG2436|consensus

Probab=97.99  E-value=2.9e-05  Score=88.00  Aligned_cols=147  Identities=12%  Similarity=0.107  Sum_probs=102.3

Q ss_pred             cchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhh---ccccc----CCCcchHHHHHHH---HHHHHHHHHHHHHHhcC
Q psy3752         612 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKIQ----NIDRSTADYMGML---ATIINSLALFDILNKSG  681 (1012)
Q Consensus       612 d~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~---~~~~~----~~~~~~~~~~~~~---~~~~~~~~l~~~l~~~g  681 (1012)
                      .....+.++..++-+...|..+|||||+|....++   .+...    ++.....+.++++   .+++++.-+...|.++|
T Consensus       107 ~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~nL~~~g  186 (520)
T KOG2436|consen  107 STSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVINLSQLG  186 (520)
T ss_pred             ccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHHHHHHHhh
Confidence            56678889999999999999999999999443332   22221    1222223333333   44555555777889998


Q ss_pred             CceeEeehhchh--------------------hhhhhcchHHHHHHhhCCCEEEEcC----cCC-CCCCccHHHHHHHHH
Q psy3752         682 IISHVMSAISIE--------------------KFLESYIPLNAIKYLEEGKVVIFAG----GIG-NPFFTTDTTAALRAA  736 (1012)
Q Consensus       682 i~a~~l~~~~~~--------------------~~~~~~~~~~l~~~L~~g~VPVi~G----~~g-~~~~s~D~~Aa~lA~  736 (1012)
                      -.+++.++....                    .-+..++.+.+..+++.|.+|+++.    .-| .-++.+|.+|..+|.
T Consensus       187 ~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~  266 (520)
T KOG2436|consen  187 TRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELAL  266 (520)
T ss_pred             ceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHh
Confidence            888776655221                    0155678899999999999999875    112 224669999999999


Q ss_pred             hcCCceEEeeeccccccccCCc
Q psy3752         737 EIKAEIILKATKVDGIYNSDPN  758 (1012)
Q Consensus       737 ~l~Ad~liilTDVdGVy~~dP~  758 (1012)
                      .|+|+.+++++|+.-+...+|.
T Consensus       267 ~L~~~kli~l~d~g~~l~e~ge  288 (520)
T KOG2436|consen  267 ALGPDKLILLMDKGRILKENGE  288 (520)
T ss_pred             ccCcceeEEecccccccccCcc
Confidence            9999999999998334455554

>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=97.98  E-value=7.3e-06  Score=79.19  Aligned_cols=65  Identities=22%  Similarity=0.282  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-----ccc-ccCCCchhHHHHHHHh
Q psy3752          97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-----GIN-LSKSASPLIKYAERIF  161 (1012)
Q Consensus        97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-----~~~-l~~~~P~L~aw~~ri~  161 (1012)
                      ++......+.|++|++.|++++||+|++||.+|+++|+++.++...     .+. ....||+|.+|++||.
T Consensus        56 ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~  126 (126)
T cd03211          56 DQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE  126 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence            5566778899999999999999999999999999999998776533     111 2356899999999973

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=97.94  E-value=1.2e-05  Score=69.11  Aligned_cols=47  Identities=30%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeC-CEeeccHHHHHHHHhh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVER-DLILYESNIINEYIDE   48 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~dd-g~~I~ES~aIl~YL~~   48 (1012)
                      ++|+.+.++... ...+.+.||.++||+|+++ |.+++||.+|++||++
T Consensus        24 l~~~~~~~~~~~-~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~   71 (71)
T cd03037          24 IPVEQIILQNDD-EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE   71 (71)
T ss_pred             CCeEEEECCCCc-hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence            588988887543 2345678999999999975 8999999999999974

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins

Probab=97.94  E-value=1.5e-05  Score=78.07  Aligned_cols=67  Identities=19%  Similarity=0.259  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhcccc------ccCCCchhHHHHHHHhc
Q psy3752          96 YKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGIN------LSKSASPLIKYAERIFS  162 (1012)
Q Consensus        96 ~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~------l~~~~P~L~aw~~ri~~  162 (1012)
                      .++...+..+.|+.|++.|++++||+|+++|.+|+++++++..+....++      ....||+|.+|++||.+
T Consensus        62 ~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~  134 (137)
T cd03212          62 EAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS  134 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence            35566778889999999999999999999999999999988766433332      13569999999999975

Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.

>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A

Probab=97.93  E-value=3.2e-05  Score=70.97  Aligned_cols=109  Identities=26%  Similarity=0.291  Sum_probs=69.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccccHHHHHHHHHHHHHHHHHHHhccc-CCCcccCCCcCHHHHHHHH
Q psy3752          59 DPLMRARARLMLLNFEKEIFIHLYMLENE---RNKTSIKGYKRAREEIRDRLITLAPLFL-KNKYMLGDEFSMLDVVIAP  134 (1012)
Q Consensus        59 ~~~era~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~Le~~L~-~~~fL~Gd~~TlADi~l~~  134 (1012)
                      |..+|++.+++..++.+++++---..+..   .........+.....+.+.+...+..|. +++||+| ++|+||..+++
T Consensus         1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFG-ewsIAD~dlA~   79 (117)
T PF14834_consen    1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFG-EWSIADADLAL   79 (117)
T ss_dssp             SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTS-S--HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCccc-cchHHHHHHHH
Confidence            46789999998888877664432111100   0111112224555667777777887776 4689999 49999999999


Q ss_pred             HhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         135 LLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       135 ~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ++.++...|.+++   +++..|.++..+||++++.+.
T Consensus        80 ml~Rl~~~gd~vP---~~l~~Ya~~qwqrpsVQ~Wla  113 (117)
T PF14834_consen   80 MLNRLVTYGDPVP---ERLADYAERQWQRPSVQRWLA  113 (117)
T ss_dssp             HHHHHHTTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred             HHHHHHHcCCCCC---HHHHHHHHHHHCCHHHHHHHH
Confidence            9999988887665   479999999999999987665

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=97.88  E-value=1.2e-05  Score=70.36  Aligned_cols=48  Identities=19%  Similarity=0.432  Sum_probs=39.3

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeC----CEeeccHHHHHHHHhhhC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVER----DLILYESNIINEYIDERF   50 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~dd----g~~I~ES~aIl~YL~~~~   50 (1012)
                      |+|+.+.+++...++  .+.||.++||+|+++    |.+|+||.+|++||+++.
T Consensus        25 i~y~~~~~~~~~~~~--~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~   76 (77)
T cd03040          25 IPYEVVEVNPVSRKE--IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL   76 (77)
T ss_pred             CceEEEECCchhHHH--HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence            588998887654333  367999999999965    799999999999999874

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=97.83  E-value=2.7e-05  Score=67.23  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=37.0

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER   49 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~   49 (1012)
                      |||+.+.++...       +||.|+||+|+++|..++||.+|++||+++
T Consensus        31 i~~~~~~~~~~~-------~~p~g~vP~l~~~g~~l~es~~I~~yL~~~   72 (72)
T cd03054          31 IPYEVVFSSNPW-------RSPTGKLPFLELNGEKIADSEKIIEYLKKK   72 (72)
T ss_pred             CceEEEecCCcc-------cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence            688888887532       799999999999999999999999999874

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.81  E-value=3.7e-05  Score=64.99  Aligned_cols=47  Identities=34%  Similarity=0.620  Sum_probs=41.1

Q ss_pred             CceEEEEecCCCCCc-hhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFNKPD-NIFRMNPYGQVPILVERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~-~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.++...... ++.+.+|.+++|+|+++|.+++||.+|++||+
T Consensus        24 i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~   71 (71)
T cd00570          24 LPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA   71 (71)
T ss_pred             CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence            578888888765443 58899999999999999999999999999985

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=97.79  E-value=3.4e-05  Score=75.45  Aligned_cols=61  Identities=15%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhcc-cCCCcccCCCcCHHHHHHHHHhhhhhhc-cc-cccCCCchhHHHHHHHhc
Q psy3752         101 EEIRDRLITLAPLF-LKNKYMLGDEFSMLDVVIAPLLWRLDYY-GI-NLSKSASPLIKYAERIFS  162 (1012)
Q Consensus       101 ~~l~~~L~~Le~~L-~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~-~l~~~~P~L~aw~~ri~~  162 (1012)
                      ..+...++.+-+.+ .+++|++|++||+|||++++.+..+... ++ ++. .||++.+|++||.+
T Consensus        82 ~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~-~~p~I~~W~eRm~~  145 (149)
T cd03197          82 EWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMV-EETKIGEWYERMDA  145 (149)
T ss_pred             HHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchh-hCcCHHHHHHHHHH
Confidence            44444554333333 4578999999999999999999888766 56 555 59999999999976

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=97.71  E-value=5.2e-05  Score=65.35  Aligned_cols=43  Identities=26%  Similarity=0.469  Sum_probs=33.7

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER   49 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~   49 (1012)
                      +||+.+.  +..  .+  ..+|.|+||+|++||.+|+||.||+.||+++
T Consensus        32 lpye~~~--~~~--~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~   74 (74)
T cd03079          32 LPFNVRC--RAN--AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK   74 (74)
T ss_pred             CCcEEEe--cCC--cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence            5777773  221  11  2678899999999999999999999999864

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>KOG3028|consensus

Probab=97.46  E-value=0.0023  Score=69.02  Aligned_cols=143  Identities=18%  Similarity=0.169  Sum_probs=90.8

Q ss_pred             cCCCCCccEEEe-CCEeeccHHHHHHHHhhhCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------
Q psy3752          20 MNPYGQVPILVE-RDLILYESNIINEYIDERFPYPQLMSS-DPLMRARARLMLLNFEKEIFIHLYMLENER---------   88 (1012)
Q Consensus        20 inP~gkVPvL~d-dg~~I~ES~aIl~YL~~~~p~~~L~p~-~~~era~v~~~~~~~~~~~~~~~~~~~~~~---------   88 (1012)
                      ..|.|++|+|+. +|..++.-.-|..||...-.+-.+-+. ...+++....|+..+...+.+.+.......         
T Consensus        44 ~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tk  123 (313)
T KOG3028|consen   44 RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTK  123 (313)
T ss_pred             CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhH
Confidence            367999999996 569999999999999873211112221 145555666655444433322211110000         


Q ss_pred             ------------------c------------cccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhh
Q psy3752          89 ------------------N------------KTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWR  138 (1012)
Q Consensus        89 ------------------~------------~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~  138 (1012)
                                        .            ....+..++......+++..|.+.|+.++|++||++|--|..++..+..
T Consensus       124 k~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~  203 (313)
T KOG3028|consen  124 KWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAI  203 (313)
T ss_pred             HHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHH
Confidence                              0            0001112344556677888999999999999999999999999999887


Q ss_pred             hhhccccc------cCCCchhHHHHHHHhc
Q psy3752         139 LDYYGINL------SKSASPLIKYAERIFS  162 (1012)
Q Consensus       139 l~~~~~~l------~~~~P~L~aw~~ri~~  162 (1012)
                      +....++.      ...+|||.+|.+++..
T Consensus       204 ~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s  233 (313)
T KOG3028|consen  204 LLQVALPNDSLQVHLLAHKNLVRYVERIRS  233 (313)
T ss_pred             HHhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence            54443321      1237999999999876

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.44  E-value=0.00013  Score=54.00  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             hhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHH
Q psy3752         392 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEIL  426 (1012)
Q Consensus       392 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l  426 (1012)
                      ..+++|+.. |++..+|++||..++||++.|++||
T Consensus         4 ~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    4 EKVQQLMEM-GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            356778887 9999999999999999999999998

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=96.88  E-value=0.036  Score=61.80  Aligned_cols=195  Identities=18%  Similarity=0.132  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCccccC-hHHHHHHHHHHHHHHhhh
Q psy3752         210 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTN-FKTIKTSIQRLKEMDLFI  288 (1012)
Q Consensus       210 l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN-~~~~~~~~~~~~~~~~~~  288 (1012)
                      +......+.++...+.....++|+|.|+|...-+.-.+..+++...-+-+..-++.|.+.. +..+..++.         
T Consensus        41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e---------  111 (299)
T PRK05441         41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVE---------  111 (299)
T ss_pred             HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhccc---------
Confidence            5566788888888888888999999999999877655555544433322222234443321 111111110         


Q ss_pred             ccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCC----chhHHHHHHhcCCCeEEEecCCCCC--Cc
Q psy3752         289 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY----HKGAVSEAIKLNIPIIGVVDTNHSP--DG  362 (1012)
Q Consensus       289 ~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~----~~~ai~Ea~~l~iP~i~l~Dt~~~~--~~  362 (1012)
                         ..++..  +  ...+   .+...     + -..-|++|++...-    -..+++.|+..|.|||+|++...+|  ..
T Consensus       112 ---~~ed~~--~--~~~~---~l~~~-----~-l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~  175 (299)
T PRK05441        112 ---GAEDDA--E--LGAA---DLKAI-----N-LTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKE  175 (299)
T ss_pred             ---ccCChH--H--HHHH---HHHhc-----C-CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHh
Confidence               000000  0  0000   01100     0 13568888886543    3468889999999999998643322  23


Q ss_pred             ceeeccCCC-----------CchhhHHHHhhhhhhhhhh--hh-----h------hhhhh--------cccccChHHHHH
Q psy3752         363 INYVIPGND-----------DSAKSIALYTKGIVDAFLD--AK-----T------VGELR--------SKTLAPIMECKK  410 (1012)
Q Consensus       363 i~~~IP~N~-----------~s~~si~l~~~~l~~ai~~--g~-----~------v~~lr--------~~t~~~~~~~k~  410 (1012)
                      .|++|....           .+..+..+++++|+..+..  |+     |      ..+||        +-||.+-.+|.+
T Consensus       176 aD~~I~~~~g~E~~~~st~~~s~taqk~iLn~lst~~~~~~gkv~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~  255 (299)
T PRK05441        176 ADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMISTGVMIRLGKVYGNLMVDVKATNEKLVDRAVRIVMEATGVSREEAEA  255 (299)
T ss_pred             CCEEEEcCCCCccccccccccchhHHHHHHHHHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            667664331           2445677888888775422  22     1      13343        348999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHh
Q psy3752         411 ALIEANGKLSKAEEILRIK  429 (1012)
Q Consensus       411 al~~~~~d~~~a~~~l~~~  429 (1012)
                      +|.+++|++..|+-.+...
T Consensus       256 ~l~~~~~~vk~a~~~~~~~  274 (299)
T PRK05441        256 ALEAADGSVKLAIVMILTG  274 (299)
T ss_pred             HHHHhCCCcHHHHHHHHhC
Confidence            9999999999999877653

>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=96.59  E-value=0.086  Score=58.66  Aligned_cols=193  Identities=18%  Similarity=0.154  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCc-cccChHHHHHHHHHHHHHHhhhc
Q psy3752         211 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGG-LLTNFKTIKTSIQRLKEMDLFIT  289 (1012)
Q Consensus       211 ~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G-~lTN~~~~~~~~~~~~~~~~~~~  289 (1012)
                      ......|..|...+....+++|+|.++|...-+.-.+..++....-|-+...-+.| +...+..+..++.          
T Consensus        38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~----------  107 (296)
T PRK12570         38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVE----------  107 (296)
T ss_pred             HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhccc----------
Confidence            44557788888888888899999999999887654445444433333222222222 2223322211111          


Q ss_pred             cCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCch----hHHHHHHhcCCCeEEEecCCCCC--Ccc
Q psy3752         290 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DGI  363 (1012)
Q Consensus       290 ~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~----~ai~Ea~~l~iP~i~l~Dt~~~~--~~i  363 (1012)
                       +.. ..  .+  .+.++   +..  .   .+ ..-|++|++...-+.    .+++.|+..|.|||+|+.....|  +..
T Consensus       108 -~~e-d~--~~--~~~~~---l~a--~---~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~a  172 (296)
T PRK12570        108 -GAE-DD--PE--LGAQD---LKA--I---GL-TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIA  172 (296)
T ss_pred             -ccC-Cc--HH--HHHHH---HHH--c---CC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence             000 00  00  00000   110  0   01 356999988766544    67899999999999998654333  346


Q ss_pred             eeeccC---CC--------CchhhHHHHhhhhhhhhhh--hh-----hh------hhhhcc--------cccChHHHHHH
Q psy3752         364 NYVIPG---ND--------DSAKSIALYTKGIVDAFLD--AK-----TV------GELRSK--------TLAPIMECKKA  411 (1012)
Q Consensus       364 ~~~IP~---N~--------~s~~si~l~~~~l~~ai~~--g~-----~v------~~lr~~--------t~~~~~~~k~a  411 (1012)
                      ||+|..   ..        .+.-+..+++++|...+..  |+     ||      .+||.+        ||.+..+|.++
T Consensus       173 D~~I~~~~g~E~~~~st~~~s~taqk~vLd~L~t~~~~r~Gk~~~n~mvd~~~~n~kl~~Ra~~i~~~~~~~~~~~a~~~  252 (296)
T PRK12570        173 DIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRLGKSYQNLMVDVKATNEKLVARAVRIVMQATGCSEDEAKEL  252 (296)
T ss_pred             CEEEeeCcCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhcCeEEEeecchHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            777742   21        2456778888888776532  22     22      345443        89999999999


Q ss_pred             HHHhcCCHHHHHHHHHH
Q psy3752         412 LIEANGKLSKAEEILRI  428 (1012)
Q Consensus       412 l~~~~~d~~~a~~~l~~  428 (1012)
                      |.+++|++..|+-.+..
T Consensus       253 l~~~~~~vk~ai~~~~~  269 (296)
T PRK12570        253 LKESDNDVKLAILMILT  269 (296)
T ss_pred             HHHhCCccHHHHHHHHh
Confidence            99999999999886655

>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase

Probab=96.23  E-value=0.052  Score=59.19  Aligned_cols=189  Identities=20%  Similarity=0.152  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCcccc-ChHHHHHHHHHHHHHHhhh
Q psy3752         210 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT-NFKTIKTSIQRLKEMDLFI  288 (1012)
Q Consensus       210 l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lT-N~~~~~~~~~~~~~~~~~~  288 (1012)
                      +.+....+.+|+..+....+++|+|.++|...-+.-.+..+++...-|-....++.|.+. .+..+...+..      .+
T Consensus        28 v~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~------~e  101 (257)
T cd05007          28 VEAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEG------AE  101 (257)
T ss_pred             HHHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccc------cC
Confidence            344557788888888888899999999999987765554444444322222223444332 22222111110      00


Q ss_pred             ccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCC----CchhHHHHHHhcCCCeEEEecCCCCCC--c
Q psy3752         289 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSPD--G  362 (1012)
Q Consensus       289 ~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~----~~~~ai~Ea~~l~iP~i~l~Dt~~~~~--~  362 (1012)
                      .+.        +.  .   .+.+..     ..+ ..-|++|++...    .-..+++.|++.|.|||+|+....+|-  .
T Consensus       102 dd~--------~~--~---~~~l~a-----~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~  162 (257)
T cd05007         102 DDE--------EA--G---AADLQA-----INL-TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQL  162 (257)
T ss_pred             ChH--------HH--H---HHHHHH-----cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHh
Confidence            000        00  0   000111     011 366888888654    335678899999999999986443331  2


Q ss_pred             ceeeccCCC-----------CchhhHHHHhhhhhhhhhh--hh-----hh------hhhhc--------ccccChHHHHH
Q psy3752         363 INYVIPGND-----------DSAKSIALYTKGIVDAFLD--AK-----TV------GELRS--------KTLAPIMECKK  410 (1012)
Q Consensus       363 i~~~IP~N~-----------~s~~si~l~~~~l~~ai~~--g~-----~v------~~lr~--------~t~~~~~~~k~  410 (1012)
                      .|++|....           .+.-+..+++++|...+..  |+     |+      .+||.        -||.+..+|.+
T Consensus       163 aD~~I~~~~g~E~~~~st~~~s~~aqk~vLn~L~t~~~~~~g~v~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~  242 (257)
T cd05007         163 ADIAIALITGPEVVAGSTRLKAGTAQKLALNMLSTAVMIRLGKVYGNLMVDVRATNEKLRERAIRIVMEATGVSRDEAEA  242 (257)
T ss_pred             CCEEEEcCCCCccccCccccccHHHHHHHHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            566654331           2445677888888765422  22     22      33433        47899999999


Q ss_pred             HHHHhcCCHHHHH
Q psy3752         411 ALIEANGKLSKAE  423 (1012)
Q Consensus       411 al~~~~~d~~~a~  423 (1012)
                      +|.+++|++..|+
T Consensus       243 ~l~~~~~~~k~a~  255 (257)
T cd05007         243 ALEQAGGDVKTAI  255 (257)
T ss_pred             HHHHhCCCceeee
Confidence            9999999987765

Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.

>TIGR00274 N-acetylmuramic acid 6-phosphate etherase

Probab=95.84  E-value=0.38  Score=53.44  Aligned_cols=192  Identities=15%  Similarity=0.099  Sum_probs=111.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHc---CCCe--ecCcccCccccChHHHHHHHHHHHH
Q psy3752         209 NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA---GMPF--IDQRWLGGLLTNFKTIKTSIQRLKE  283 (1012)
Q Consensus       209 ~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~---~~~~--v~~rw~~G~lTN~~~~~~~~~~~~~  283 (1012)
                      -+...+..+.+|...+....+++|+|.|+|...-+.=.+..+++..   |..+  +.+-..||    +..+.....-+  
T Consensus        35 av~~~l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg----~~a~~~~~e~~--  108 (291)
T TIGR00274        35 AIESVLPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGG----ECAILHAVEGA--  108 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCC----hHHHhccchhh--
Confidence            3455677788888888877789999999998876543334433222   3211  11111222    11111011100  


Q ss_pred             HHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCC-C
Q psy3752         284 MDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTN-H  358 (1012)
Q Consensus       284 ~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~-~  358 (1012)
                                ++.+..       -..-+..     .. -+.-|++|++...-+    ..+++.|++.|.|||+|+... +
T Consensus       109 ----------Ed~~~~-------~~~dl~~-----~~-l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s  165 (291)
T TIGR00274       109 ----------EDSTEA-------GANDLQN-----IH-LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKS  165 (291)
T ss_pred             ----------hcchHH-------HHHHHHh-----cC-CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence                      000000       0000111     01 235688888875533    357789999999999997532 2


Q ss_pred             C-CCcceeeccCC-----------CCchhhHHHHhhhhhhhh--hhhh-----hh------hhhhc--------ccccCh
Q psy3752         359 S-PDGINYVIPGN-----------DDSAKSIALYTKGIVDAF--LDAK-----TV------GELRS--------KTLAPI  405 (1012)
Q Consensus       359 ~-~~~i~~~IP~N-----------~~s~~si~l~~~~l~~ai--~~g~-----~v------~~lr~--------~t~~~~  405 (1012)
                      . .+..|++|...           -.|.-+..+++++|+..+  +.|+     ||      .+||.        -||.+.
T Consensus       166 ~La~~aD~~I~~~~g~E~~~~st~~~s~~aqk~iLd~L~t~~~~~~gk~~~n~mvd~~~~N~kl~~Ra~~i~~~~~~~~~  245 (291)
T TIGR00274       166 AASEIADIAIETIVGPEILTGSSRLKAGTAQKMVLNMLSTASMIKLGKVYENLMVDVQASNEKLKARAVRIVRQATDCNK  245 (291)
T ss_pred             hhHHhCCEEEecCCCCccccccchhhHHHHHHHHHHHHHHHHHHhcchhhcCeEEeeecccHHHHHHHHHHHHHHhCcCH
Confidence            2 23466666542           134566677888887755  3333     22      34443        489999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752         406 MECKKALIEANGKLSKAEEILRIK  429 (1012)
Q Consensus       406 ~~~k~al~~~~~d~~~a~~~l~~~  429 (1012)
                      .+|.++|.+++|++..|+-.+...
T Consensus       246 ~~a~~~l~~~~~~vk~Ai~~~~~~  269 (291)
T TIGR00274       246 ELAEQTLLAADQNVKLAIVMILST  269 (291)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHhC
Confidence            999999999999999999877653

This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=95.63  E-value=0.024  Score=49.00  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=27.8

Q ss_pred             cCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752          20 MNPYGQVPILVERDLILYESNIINEYIDER   49 (1012)
Q Consensus        20 inP~gkVPvL~ddg~~I~ES~aIl~YL~~~   49 (1012)
                      ..|.|++|+|+++|..+.+|..|++||.++
T Consensus        43 ~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~   72 (73)
T cd03078          43 RSPTGKLPALLTSGTKISGPEKIIEYLRKQ   72 (73)
T ss_pred             CCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence            468999999999999999999999999865

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=95.39  E-value=0.013  Score=54.56  Aligned_cols=72  Identities=26%  Similarity=0.293  Sum_probs=51.8

Q ss_pred             CeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHH
Q psy3752         349 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI  428 (1012)
Q Consensus       349 P~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~  428 (1012)
                      |.|...++...   -+|.|.|--.-.....-     ...-.....++.++++||++..+|++||.++|||+-.|+-+|.+
T Consensus        43 P~V~~m~~~g~---~tY~I~Ge~~~e~~~~~-----~~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~  114 (115)
T PRK06369         43 PQVTVMDAQGQ---KTYQIVGEPEEVEKEAE-----KEVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS  114 (115)
T ss_pred             CeEEEEecCCC---cEEEEEeccEEeecccc-----ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence            56666666433   56888776443211000     01234556788899999999999999999999999999999975

>KOG1147|consensus

Probab=95.29  E-value=0.0023  Score=72.80  Aligned_cols=104  Identities=14%  Similarity=0.170  Sum_probs=69.9

Q ss_pred             CCEeeccHHHHHHHHhhhC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH
Q psy3752          32 RDLILYESNIINEYIDERF-PYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITL  110 (1012)
Q Consensus        32 dg~~I~ES~aIl~YL~~~~-p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~L  110 (1012)
                      ++..+..+..+..|....- +.+.|||.+ .++.+++.|..+...                      .....+...+..+
T Consensus        44 d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~----------------------~~~~~~s~~~~~l  100 (712)
T KOG1147|consen   44 DGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST----------------------FSFDEISSSLSEL  100 (712)
T ss_pred             ccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh----------------------cchHHHHHHHHHH
Confidence            5666666777777765332 234588876 788899988544332                      0113455677778


Q ss_pred             HhcccCCCcccCCCcCHHHHHHHHHhhhhhhcc--ccccCCCchhHHHHH
Q psy3752         111 APLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYG--INLSKSASPLIKYAE  158 (1012)
Q Consensus       111 e~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~--~~l~~~~P~L~aw~~  158 (1012)
                      +..|.-..||+|.++|+||+++|..+..-.+..  +.....+-++.+|+.
T Consensus       101 d~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~  150 (712)
T KOG1147|consen  101 DKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD  150 (712)
T ss_pred             HhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC
Confidence            888888889999999999999999986532221  122334667888888

>TIGR00264 alpha-NAC-related protein

Probab=95.05  E-value=0.017  Score=53.56  Aligned_cols=74  Identities=19%  Similarity=0.233  Sum_probs=54.9

Q ss_pred             hcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHH
Q psy3752         345 KLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEE  424 (1012)
Q Consensus       345 ~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~  424 (1012)
                      -...|.|.+.+.-..   -+|-|-|..... .+.      ...-.....++.++++||++..+|++||.++|||+-.|+-
T Consensus        43 vf~~p~V~~m~~~G~---~tYqI~G~~~~~-~~~------~~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~  112 (116)
T TIGR00264        43 IFENPKVQVMDILGV---KTYQITGKPKKE-KVE------EEEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIM  112 (116)
T ss_pred             EEecCeeEEEecCCc---EEEEEecccEEe-ecc------cccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHH
Confidence            356788888887543   678888765431 100      0012455678889999999999999999999999999999


Q ss_pred             HHHH
Q psy3752         425 ILRI  428 (1012)
Q Consensus       425 ~l~~  428 (1012)
                      +|.+
T Consensus       113 ~L~~  116 (116)
T TIGR00264       113 KLEE  116 (116)
T ss_pred             HhhC
Confidence            8853

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>smart00165 UBA Ubiquitin associated domain

Probab=94.78  E-value=0.031  Score=41.22  Aligned_cols=26  Identities=38%  Similarity=0.328  Sum_probs=24.7

Q ss_pred             cccChHHHHHHHHHhcCCHHHHHHHH
Q psy3752         401 TLAPIMECKKALIEANGKLSKAEEIL  426 (1012)
Q Consensus       401 t~~~~~~~k~al~~~~~d~~~a~~~l  426 (1012)
                      .|.+..+|+.||..++||+++|.+||
T Consensus        11 mGf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165       11 MGFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            48899999999999999999999998

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>KOG1071|consensus

Probab=94.75  E-value=0.012  Score=63.38  Aligned_cols=109  Identities=19%  Similarity=0.257  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHhhhhh-hhhhcccccc--CceEEEEEe-------------CCEEEEEEEecCchhhhcchHHHHHHHHH
Q psy3752         418 KLSKAEEILRIKLGKK-ILNISNRNAK--DGVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKI  481 (1012)
Q Consensus       418 d~~~a~~~l~~~~~~~-a~k~~~r~~~--eG~v~~~~~-------------~~~~~lve~~~etdfva~~~~f~~l~~~i  481 (1012)
                      .+..++...--+-+.. .-||+-+..+  .+.++.|.|             |+.|+||.+|.....++   .++.+++.|
T Consensus       192 sl~d~l~~~i~~~GENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~---~~~~~~~~i  268 (340)
T KOG1071|consen  192 SLKDQLALAIGKLGENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLT---SLEDVAKQI  268 (340)
T ss_pred             eHHHHHHHHHHHhccceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhh---hHHHHHHHH
Confidence            3444444444332222 2355555543  466899998             36788888887765443   467789999


Q ss_pred             HHHHHhcCCCChh----------------HhhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCC
Q psy3752         482 AKLITENTPINLD----------------QLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN  535 (1012)
Q Consensus       482 a~~iaa~~p~~~~----------------~l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~  535 (1012)
                      +.|++.|.|..+.                -+.|+|+-|+.+||.+++.      +-|.+|..|+||+.|+
T Consensus       269 ~q~ivgm~p~s~~e~~k~e~~~~~e~et~ll~q~~lld~~itv~~~l~------~~~~~V~DfvR~E~Ge  332 (340)
T KOG1071|consen  269 CQHIVGMSPESVGESLKDEPGQGAEAETALLSQPSLLDPSITVKEYLD------PHNVSVVDFVRFEVGE  332 (340)
T ss_pred             HHHhhccChhhhcccccccccccccchhhheecHhhcCchhhHHHHhc------cCCcchHHHHHHHhcc
Confidence            9999999997665                1678999999999988887      6678999999999987

>cd00194 UBA Ubiquitin Associated domain

Probab=94.69  E-value=0.034  Score=41.26  Aligned_cols=32  Identities=28%  Similarity=0.210  Sum_probs=27.6

Q ss_pred             hhhhcccccChHHHHHHHHHhcCCHHHHHHHHH
Q psy3752         395 GELRSKTLAPIMECKKALIEANGKLSKAEEILR  427 (1012)
Q Consensus       395 ~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~  427 (1012)
                      .+|.. .|.+..+|..||..++||+++|.+||.
T Consensus         6 ~~L~~-mGf~~~~~~~AL~~~~~d~~~A~~~L~   37 (38)
T cd00194           6 EQLLE-MGFSREEARKALRATNNNVERAVEWLL   37 (38)
T ss_pred             HHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            33444 589999999999999999999999985

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=94.56  E-value=0.066  Score=51.72  Aligned_cols=66  Identities=24%  Similarity=0.397  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHHHHhcCCcc
Q psy3752          97 KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFSRPSY  166 (1012)
Q Consensus        97 ~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~ri~~rp~~  166 (1012)
                      ++...+++..|..+|..+......-| ++|+-||.+||.|+.+... |+.++   |++.+|+++|.++..+
T Consensus        58 ~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkgi~~P---~~V~~Y~~~~s~~t~V  124 (132)
T PF04399_consen   58 PELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKGIQWP---PKVRAYMDRMSKATGV  124 (132)
T ss_dssp             HHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTTS------HHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccCCcCC---HHHHHHHHHHHHHcCC
Confidence            45567788888888888875555544 8999999999999988655 55443   6799999999876554

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.

>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=94.07  E-value=0.28  Score=47.00  Aligned_cols=65  Identities=22%  Similarity=0.367  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHHHHhcCCcc
Q psy3752          98 RAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFSRPSY  166 (1012)
Q Consensus        98 ~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~ri~~rp~~  166 (1012)
                      ....+++..|..++..+..... ++..+|+-||.+||.|+.+... |..++   |++.+|+++|++...+
T Consensus        60 ~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkgi~~P---~~V~~Y~~~~s~~t~V  125 (128)
T cd03199          60 QYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKGLVFP---PKVKAYLERMSALTKV  125 (128)
T ss_pred             HHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcCCCCC---HHHHHHHHHHHHHhCC
Confidence            4556778888888888854444 4568999999999999988654 55443   6799999999886554

coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=93.29  E-value=0.1  Score=45.71  Aligned_cols=47  Identities=15%  Similarity=0.173  Sum_probs=38.3

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.++-....+++...++..+||++..+|..+.++..|.+||+
T Consensus        33 i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~   79 (79)
T TIGR02190        33 YDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA   79 (79)
T ss_pred             CCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence            57887777644334566777889999999999999999999999985

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=88.62  E-value=0.74  Score=39.34  Aligned_cols=47  Identities=11%  Similarity=0.090  Sum_probs=36.6

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.++-......+.......++|++..||..+.++..|.+||+
T Consensus        26 i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~   72 (72)
T cd03029          26 ISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA   72 (72)
T ss_pred             CCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence            56777777644323445566788899999999999999999999984

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK10638 glutaredoxin 3; Provisional

Probab=87.48  E-value=0.72  Score=40.76  Aligned_cols=47  Identities=13%  Similarity=0.073  Sum_probs=38.9

Q ss_pred             CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy3752           1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYID   47 (1012)
Q Consensus         1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~   47 (1012)
                      ++|+.+.|+... ..++|.+.+|.+++|++..||..+.....+..+-.
T Consensus        27 i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~   74 (83)
T PRK10638         27 VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA   74 (83)
T ss_pred             CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence            578888887554 45778999999999999999999999888877754

>PRK00414 gmhA phosphoheptose isomerase; Reviewed

Probab=87.45  E-value=15  Score=38.10  Aligned_cols=128  Identities=13%  Similarity=0.080  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcc-cCcc----ccChHHHHHHHHHHHHHHhh
Q psy3752         213 TLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGL----LTNFKTIKTSIQRLKEMDLF  287 (1012)
Q Consensus       213 t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~----lTN~~~~~~~~~~~~~~~~~  287 (1012)
                      -...|.+|+..|.....++++|.|+|...-..- -+.++......|   +| .+|.    ++++..+. .+         
T Consensus        26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~-A~~~a~~l~~~~---~~~r~g~~~~~~~d~~~~~-~~---------   91 (192)
T PRK00414         26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCD-AMHFAEELTGRY---RENRPGYPAIAISDVSHLS-CV---------   91 (192)
T ss_pred             hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH-HHHHHHHhcccc---cCCCCCceEEecCcHHHHh-hh---------
Confidence            346799999999999899999999998775432 233332221111   11 1111    12221110 00         


Q ss_pred             hccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC--C
Q psy3752         288 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--D  361 (1012)
Q Consensus       288 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~--~  361 (1012)
                      ..+..+.       ..+.++.          ....+..|++|++...-+    ..+++.|+..|+|||+|+....+|  +
T Consensus        92 ~~d~~~~-------~~~~~~~----------~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~  154 (192)
T PRK00414         92 SNDFGYD-------YVFSRYV----------EAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAG  154 (192)
T ss_pred             hccCCHH-------HHHHHHH----------HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence            0000000       0011111          112257799998875532    357788899999999999754433  2


Q ss_pred             cceeeccCCC
Q psy3752         362 GINYVIPGND  371 (1012)
Q Consensus       362 ~i~~~IP~N~  371 (1012)
                      ..|+.|....
T Consensus       155 ~ad~~l~~~~  164 (192)
T PRK00414        155 LADIEIRVPH  164 (192)
T ss_pred             hCCEEEEeCC
Confidence            3566665554

>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase

Probab=85.98  E-value=8.2  Score=39.45  Aligned_cols=38  Identities=11%  Similarity=0.086  Sum_probs=28.2

Q ss_pred             CCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCC
Q psy3752         323 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP  360 (1012)
Q Consensus       323 ~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~  360 (1012)
                      ...|++|+++-.-+    ..+++.|+..|+|||+|+|...+|
T Consensus        71 ~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~  112 (179)
T TIGR03127        71 KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPEST  112 (179)
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence            35688888875422    356677899999999999976555

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.

>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space

Probab=85.37  E-value=0.92  Score=39.05  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=25.6

Q ss_pred             cCCCCCccEEEe-CCEeeccHHHHHHHH
Q psy3752          20 MNPYGQVPILVE-RDLILYESNIINEYI   46 (1012)
Q Consensus        20 inP~gkVPvL~d-dg~~I~ES~aIl~YL   46 (1012)
                      ++|.|++|+|.+ ++..+.+-..|++||
T Consensus        44 ~Sptg~LP~L~~~~~~~vsg~~~Iv~yL   71 (72)
T PF10568_consen   44 LSPTGELPALIDSGGTWVSGFRNIVEYL   71 (72)
T ss_pred             cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence            689999999999 999999999999998

In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=84.45  E-value=14  Score=36.07  Aligned_cols=115  Identities=18%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcc-cCccccChHHHHHHHHHHHHHHhhhccCc
Q psy3752         214 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGLLTNFKTIKTSIQRLKEMDLFITNGS  292 (1012)
Q Consensus       214 ~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~lTN~~~~~~~~~~~~~~~~~~~~~~  292 (1012)
                      ...+.+|+..+.....+||+|.++|+..-... ...++.+.+..+-..++ .+.+.-+-....   ..-..++   ....
T Consensus        18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~---~~~~   90 (138)
T PF13580_consen   18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAI-ASHFAADLGGLFGVNRILLPAIALNDDALT---AISNDLE---YDEG   90 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT--EEEEESTHHHHH-HHHHHHHHHCHSSSTSSS-SEEETTSTHHH---HHHHHTT---GGGT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhH-HHHHHHHHhcCcCCCcccccccccccchHh---hhhcccc---hhhH
Confidence            67889999999999999999999999876543 34555555444433344 343333321100   0011111   1111


Q ss_pred             ccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCC-Cch---hHHHHHHhcCCCeEEEe
Q psy3752         293 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG-YHK---GAVSEAIKLNIPIIGVV  354 (1012)
Q Consensus       293 ~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~-~~~---~ai~Ea~~l~iP~i~l~  354 (1012)
                                 +.+++   .+.+.     -+.-|++|++... ++.   .|+++|++.|.+||+|.
T Consensus        91 -----------~~~~~---~~~~~-----~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT  137 (138)
T PF13580_consen   91 -----------FARQL---LALYD-----IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT  137 (138)
T ss_dssp             -----------HHHHH---HHHTT-------TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred             -----------HHHHH---HHHcC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence                       12222   22221     1477999998765 333   36789999999999985

...

>COG2103 Predicted sugar phosphate isomerase [General function prediction only]

Probab=83.11  E-value=33  Score=36.97  Aligned_cols=196  Identities=18%  Similarity=0.159  Sum_probs=123.5

Q ss_pred             ecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhh
Q psy3752         208 INLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLF  287 (1012)
Q Consensus       208 i~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~  287 (1012)
                      .-+++.+..+..|...+..-.++||+..++|-....+--|..+++-..-|-+...-+=|.+--=.   ..+.+.  -+..
T Consensus        37 ~AV~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~---~A~~~a--vEGa  111 (298)
T COG2103          37 LAVEAALPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGE---EAILKA--VEGA  111 (298)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCH---HHHHHh--hcCc
Confidence            34677888999999999988899999999999988877777776655444444333333332211   111110  1111


Q ss_pred             hccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCC-CCCCEEEEeCC----CCchhHHHHHHhcCCCeEEE-ecCCCCCC
Q psy3752         288 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMN-IIPDAIFIIDV----GYHKGAVSEAIKLNIPIIGV-VDTNHSPD  361 (1012)
Q Consensus       288 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~-~~P~~~iv~~~----~~~~~ai~Ea~~l~iP~i~l-~Dt~~~~~  361 (1012)
                      +.+      .+--..       -       +++.. ..-|+||=+-.    .+=.-|+++|++.|..||+| |+-++...
T Consensus       112 ED~------~~~g~~-------d-------l~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~  171 (298)
T COG2103         112 EDD------EELGEA-------D-------LKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAIS  171 (298)
T ss_pred             ccc------HHHHHH-------H-------HHHcCCCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhh
Confidence            100      000000       0       11111 24577766642    24456899999999999999 66776544


Q ss_pred             -cceeeccCC-----------CCchhhHHHHhhhhhhhhh--hhh-----------hhhhhhc--------ccccChHHH
Q psy3752         362 -GINYVIPGN-----------DDSAKSIALYTKGIVDAFL--DAK-----------TVGELRS--------KTLAPIMEC  408 (1012)
Q Consensus       362 -~i~~~IP~N-----------~~s~~si~l~~~~l~~ai~--~g~-----------~v~~lr~--------~t~~~~~~~  408 (1012)
                       ..|++|--=           -++-.+=.+++|+|+.+..  -|+           ..++||.        -|++...+.
T Consensus       172 ~~Ad~~I~~~vGPEvltGSTRlKaGTAQKlvLNMlST~~Mi~lGKvy~NlMVDv~atN~KL~dRa~RIv~~aT~~~~~~A  251 (298)
T COG2103         172 RIADIAIEPVVGPEVLTGSTRLKAGTAQKLVLNMLSTGVMIKLGKVYGNLMVDVKATNEKLRDRAVRIVMEATGCSAEEA  251 (298)
T ss_pred             hhcCcceeeccCccccccccccccchHHHHHHHHHHHHHHHHhcccccceEEEeecchHHHHHHHHHHHHHHhCCCHHHH
Confidence             366666321           2444567899999988653  233           1244544        489999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHH
Q psy3752         409 KKALIEANGKLSKAEEILRI  428 (1012)
Q Consensus       409 k~al~~~~~d~~~a~~~l~~  428 (1012)
                      .++|.+++++..-|+-.+..
T Consensus       252 ~~~L~~~~~~vK~AIvm~~~  271 (298)
T COG2103         252 EALLEEAGGNVKLAIVMLLT  271 (298)
T ss_pred             HHHHHHcCCccHhHHHHHHh
Confidence            99999999999999977754

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=82.13  E-value=1.9  Score=36.31  Aligned_cols=46  Identities=15%  Similarity=0.393  Sum_probs=32.1

Q ss_pred             CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEee--ccHHHHHHHH
Q psy3752           1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLIL--YESNIINEYI   46 (1012)
Q Consensus         1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I--~ES~aIl~YL   46 (1012)
                      ++|+.+.++... ..+++.+.++.+.+|+|..+|..+  +++..|.+||
T Consensus        25 i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i   73 (74)
T TIGR02196        25 IAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL   73 (74)
T ss_pred             CeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence            355555554322 235678889999999999988877  6777777665

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=81.17  E-value=1.5  Score=41.18  Aligned_cols=34  Identities=29%  Similarity=0.212  Sum_probs=29.0

Q ss_pred             hhhhhcccccChHHHHHHHHHhcCCHHHHHHHHH
Q psy3752         394 VGELRSKTLAPIMECKKALIEANGKLSKAEEILR  427 (1012)
Q Consensus       394 v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~  427 (1012)
                      ++-.-+.+|++..+..|||.++|||+-.|+--|.
T Consensus        88 IkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~  121 (122)
T COG1308          88 IKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLT  121 (122)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhc
Confidence            4444567999999999999999999999997764

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=80.75  E-value=1.6  Score=33.34  Aligned_cols=36  Identities=19%  Similarity=-0.049  Sum_probs=28.6

Q ss_pred             hhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHH
Q psy3752         393 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI  428 (1012)
Q Consensus       393 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~  428 (1012)
                      .+.++..-||++-..|.+-|+.+|||++.|++.--.
T Consensus         3 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~   38 (43)
T PF14555_consen    3 KIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD   38 (43)
T ss_dssp             HHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            356677789999999999999999999999986543

>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily

Probab=80.37  E-value=27  Score=35.57  Aligned_cols=51  Identities=14%  Similarity=0.118  Sum_probs=34.8

Q ss_pred             CCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCCCC--ccee--eccCCCCc
Q psy3752         323 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINY--VIPGNDDS  373 (1012)
Q Consensus       323 ~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~~~--~i~~--~IP~N~~s  373 (1012)
                      +..|++|++...-+    ..+++.|+..|+|||+|++...+|-  ..|+  .+|..+.+
T Consensus       100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~~~  158 (177)
T cd05006         100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSDDTP  158 (177)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCCChH
Confidence            46799999875433    4677889999999999998765442  2444  45554333

Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).

>PRK10886 DnaA initiator-associating protein DiaA; Provisional

Probab=80.27  E-value=29  Score=36.24  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcc-cCcc-c-cChHHHHHHHHHHHHHHhhhcc
Q psy3752         214 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGL-L-TNFKTIKTSIQRLKEMDLFITN  290 (1012)
Q Consensus       214 ~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~-l-TN~~~~~~~~~~~~~~~~~~~~  290 (1012)
                      ...|.+|+..+.....++++|+|+|...-+.. -+.++.+....|...|- +|-. + +|...+.. +         -.+
T Consensus        24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~-A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta-~---------and   92 (196)
T PRK10886         24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAAN-AQHFAASMINRFETERPSLPAIALNTDNVVLTA-I---------AND   92 (196)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEECcHHHHH-HHHHHHHHhccccccCCCcceEEecCcHHHHHH-H---------hcc
Confidence            47788999999998899999999998765432 23333332111211111 1111 2 22221100 0         001


Q ss_pred             CcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCch----hHHHHHHhcCCCeEEEecCC
Q psy3752         291 GSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTN  357 (1012)
Q Consensus       291 ~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~----~ai~Ea~~l~iP~i~l~Dt~  357 (1012)
                      ..|.       ..|.++.          +.+.+..|++|++...-+.    .+++.|+..|+|||+|+-.+
T Consensus        93 ~~~~-------~~f~~ql----------~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~  146 (196)
T PRK10886         93 RLHD-------EVYAKQV----------RALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYD  146 (196)
T ss_pred             ccHH-------HHHHHHH----------HHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            1110       0122221          1234678999998766433    46778889999999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1012
1p87_B	240	Real Space Refined Coordinates Of The 30s Subunit F		2e-61
1vs5_B	241	Crystal Structure Of The Bacterial Ribosome From Es		2e-61
2gy9_B	236	Structure Of The 30s Subunit Of A Pre-Translocation		2e-61
3fih_B	218	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		3e-61
4hoj_A	210	Crystal Structure Of Glutathione Transferase Homolo		6e-56
1i94_B	255	Crystal Structures Of The Small Ribosomal Subunit W		7e-54
1fjg_B	256	Structure Of The Thermus Thermophilus 30s Ribosomal		7e-54
1pns_B	234	Crystal Structure Of A Streptomycin Dependent Ribos		8e-54
3fic_B	235	T. Thermophilus 70s Ribosome In Complex With Mrna,		9e-54
2e5l_B	227	A Snapshot Of The 30s Ribosomal Subunit Capturing M		1e-53
1x18_E	231	Contact Sites Of Era Gtpase On The Thermus Thermoph		8e-52
1ybd_A	239	Crystal Structure Analysis Of Uridylate Kinase From		8e-44
3ek5_A	243	Unique Gtp-Binding Pocket And Allostery Of Ump Kina		1e-43
3bbn_B	231	Homology Model For The Spinach Chloroplast 30s Subu		1e-41
2bnd_A	241	The Structure Of E.Coli Ump Kinase In Complex With		1e-39
2bne_A	241	The Structure Of E. Coli Ump Kinase In Complex With		1e-39
3nwy_A	281	Structure And Allosteric Regulation Of The Uridine		7e-39
2a1f_A	247	Crystal Structure Of Uridylate Kinase Length = 247		5e-38
2bnf_A	241	The Structure Of E. Coli Ump Kinase In Complex With		2e-35
1is1_A	185	Crystal Structure Of Ribosome Recycling Factor From		8e-35
1ek8_A	185	Crystal Structure Of The Ribosome Recycling Factor		7e-33
4gd1_Y	183	Structures Of The Bacterial Ribosome In Classical A		1e-32
1ise_A	185	Crystal Structure Of A Mutant Of Ribosome Recycling		6e-32
4a7w_A	240	Crystal Structure Of Uridylate Kinase From Helicoba		4e-31
1eh1_A	185	Ribosome Recycling Factor From Thermus Thermophilus		9e-31
1yy7_A	213	Crystal Structure Of Stringent Starvation Protein A		1e-30
4gfq_A	209	2.65 Angstrom Resolution Crystal Structure Of Ribos		2e-30
2jjx_A	255	The Crystal Structure Of Ump Kinase From Bacillus A		3e-30
2va1_A	256	Crystal Structure Of Ump Kinase From Ureaplasma Par		2e-29
3lyk_A	216	Structure Of Stringent Starvation Protein A Homolog		3e-29
1z9d_A	252	Crystal Structure Of A Putative Uridylate Kinase (U		4e-29
3lyp_A	215	Structure Of Stringent Starvation Protein A Homolog		8e-29
3agp_A	1289	Structure Of Viral Polymerase Form I Length = 1289		8e-28
3mmp_A	678	Structure Of The Qb Replicase, An Rna-Dependent Rna		9e-28
1efu_B	282	Elongation Factor Complex Ef-TuEF-Ts From Escherich		8e-27
4dej_A	231	Crystal Structure Of Glutathione Transferase-Like P		9e-27
1wqf_A	185	Crystal Structure Of Ribosome Recycling Factor From		2e-26
1dd5_A	185	Crystal Structure Of Thermotoga Maritima Ribosome R		2e-25
3mdk_A	217	Structure Of Stringent Starvation Protein A (Sspa)		2e-25
1ge9_A	184	Solution Structure Of The Ribosome Recycling Factor		2e-23
1aip_C	196	Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt		8e-11
1aip_C	196	Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt		1e-04
1eem_A	241	Glutathione Transferase From Homo Sapiens Length =		5e-10
3vln_A	241	Human Glutathione Transferase O1-1 C32s Mutant In C		5e-10
3lfl_A	240	Crystal Structure Of Human Glutathione Transferase		6e-10
3qag_A	239	Human Glutathione Transferase O2 With Glutathione -		8e-10
1y69_8	113	Rrf Domain I In Complex With The 50s Ribosomal Subu		6e-09
1xb2_B	291	Crystal Structure Of Bos Taurus Mitochondrial Elong		3e-08
3qav_A	243	Crystal Structure Of A Glutathione S-transferase Fr		2e-07
1vi6_A	208	Crystal Structure Of Ribosomal Protein S2p Length =		6e-07
1aw9_A	216	Structure Of Glutathione S-Transferase Iii In Apo F		2e-06
1vi5_A	208	Crystal Structure Of Ribosomal Protein S2p Length =		2e-06
4iq1_A	231	Crystal Structure Of Glutathione S-transferase Mha_		2e-05
3uap_A	227	Crystal Structure Of Glutathione Transferase (Targe		3e-05
1tfe_A	145	Dimerization Domain Of Ef-Ts From T. Thermophilus L		7e-05
1tfe_A	145	Dimerization Domain Of Ef-Ts From T. Thermophilus L		1e-04
3lf9_A	121	Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1		1e-04
4j2f_A	223	Crystal Structure Of A Glutathione Transferase Fami		1e-04
2vo4_A	219	Glutathione Transferase From Glycine Max Length = 2		3e-04
4g9h_A	211	Crystal Structure Of Glutahtione S-Transferase Homo		4e-04
3tot_A	226	Crystal Structure Of Glutathione Transferase (Targe		4e-04
1oyj_A	231	Crystal Structure Solution Of Rice Gst1 (Osgstu1) I		9e-04

>pdb|1P87|B Chain B, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome Length = 240

Iteration: 1
 Score =  234 bits (597), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 167/240 (69%), Gaps = 8/240 (3%)
Query: 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
           +++AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++   KG +L
Sbjct: 8   MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 67
Query: 236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
           FVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    +G+  K
Sbjct: 68  FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 127
Query: 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
           L+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  +VD
Sbjct: 128 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 187
Query: 356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 415
           TN  PDG+++VIPGNDD+ +++ LY   +      A TV E RS+ LA   + +++ +EA
Sbjct: 188 TNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRSQDLAS--QAEESFVEA 239

>pdb|1VS5|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 241

Iteration: 1
 Score =  234 bits (596), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 167/240 (69%), Gaps = 8/240 (3%)
Query: 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
           +++AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++   KG +L
Sbjct: 9   MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 68
Query: 236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
           FVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    +G+  K
Sbjct: 69  FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 128
Query: 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
           L+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  +VD
Sbjct: 129 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 188
Query: 356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 415
           TN  PDG+++VIPGNDD+ +++ LY   +      A TV E RS+ LA   + +++ +EA
Sbjct: 189 TNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRSQDLAS--QAEESFVEA 240

>pdb|2GY9|B Chain B, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 236

Iteration: 1
 Score =  234 bits (596), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/240 (46%), Positives = 167/240 (69%), Gaps = 8/240 (3%)
Query: 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
           +++AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++   KG +L
Sbjct: 4   MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 63
Query: 236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
           FVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    +G+  K
Sbjct: 64  FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 123
Query: 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
           L+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  +VD
Sbjct: 124 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 183
Query: 356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEA 415
           TN  PDG+++VIPGNDD+ +++ LY   +      A TV E RS+ LA   + +++ +EA
Sbjct: 184 TNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRSQDLAS--QAEESFVEA 235

>pdb|3FIH|B Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 218

Iteration: 1
 Score =  233 bits (595), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/224 (48%), Positives = 157/224 (70%), Gaps = 6/224 (2%)
Query: 176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 235
           +++AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++   KG +L
Sbjct: 1   MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60
Query: 236 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 295
           FVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    +G+  K
Sbjct: 61  FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 120
Query: 296 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 355
           L+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  +VD
Sbjct: 121 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 180
Query: 356 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRS 399
           TN  PDG+++VIPGNDD+ +++ LY   +      A TV E RS
Sbjct: 181 TNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRS 218

>pdb|4HOJ|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From Neisseria Gonorrhoeae, Target Efi-501841, With Bound Glutathione Length = 210

Iteration: 1
 Score =  216 bits (549), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 103/178 (57%), Positives = 135/178 (75%), Gaps = 2/178 (1%)
Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           MDFEI+DID++NKP+++  MNPY QVP+LVERDL+L+ESNIINEYIDERFP+PQLM  DP
Sbjct: 27  MDFEIKDIDIYNKPEDLAVMNPYNQVPVLVERDLVLHESNIINEYIDERFPHPQLMPGDP 86
Query: 61  XXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYM 120
                        EKE+F H+ +LEN     + K   +ARE I + L  L+P F K+KY+
Sbjct: 87  VMRGRGRLVLYRMEKELFNHVQVLENP--AAANKEQAKAREAIGNGLTMLSPSFSKSKYI 144
Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQ 178
           LG++FSM+DV +APLLWRLD+Y + L KSA+PL+KYAERIF R +++E+LTPAEK M+
Sbjct: 145 LGEDFSMIDVALAPLLWRLDHYDVKLGKSAAPLLKYAERIFQREAFIEALTPAEKAMR 202

>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 255

Iteration: 1
 Score =  209 bits (532), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           +++++AGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    GT
Sbjct: 7   KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 66
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
           +LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  I
Sbjct: 67  ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 126
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I +
Sbjct: 127 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 186
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
            DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 187 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 225

>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 256

Iteration: 1
 Score =  209 bits (532), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           +++++AGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    GT
Sbjct: 8   KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 67
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
           +LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  I
Sbjct: 68  ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 127
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I +
Sbjct: 128 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 187
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
            DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 188 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 226

>pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 234

Iteration: 1
 Score =  209 bits (531), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           +++++AGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    GT
Sbjct: 2   KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 61
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
           +LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  I
Sbjct: 62  ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 121
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I +
Sbjct: 122 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 181
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
            DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 182 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220

>pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 235

Iteration: 1
 Score =  209 bits (531), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           +++++AGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    GT
Sbjct: 2   KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 61
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
           +LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  I
Sbjct: 62  ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 121
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I +
Sbjct: 122 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 181
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
            DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 182 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220

>pdb|2E5L|B Chain B, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via The Shine- Dalgarno Interaction Length = 227

Iteration: 1
 Score =  208 bits (529), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 146/219 (66%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           +++++AGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    GT
Sbjct: 7   KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 66
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
           +LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  I
Sbjct: 67  ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 126
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I +
Sbjct: 127 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 186
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
            DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 187 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 225

>pdb|1X18|E Chain E, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 231

Iteration: 1
 Score =  202 bits (514), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 98/219 (44%), Positives = 147/219 (67%), Gaps = 3/219 (1%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           +++++AGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    GT
Sbjct: 2   KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 61
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
           +LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI+  + RL+E++    +  I
Sbjct: 62  ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTIQ-RVHRLEELEALFASPEI 120
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            +  KKE  L   +  +L + + G + +  +PDAIF++D      AV EA KL IP+I +
Sbjct: 121 EERPKKEQRL--HELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 178
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
            DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 179 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 217

>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From Neisseria Meningitidis Length = 239

Iteration: 1
 Score =  176 bits (445), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 119/182 (65%)
Query: 641 NICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYI 700
           NI RG+S +  + DR+TADY G  AT+ N+LAL D     GI + V SA+S ++  E+Y 
Sbjct: 57  NIFRGVSAQAGSXDRATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETYA 116
Query: 701 PLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGIYNSDPNKC 760
              AI+YLEEGKVVIFA G GNPFFTTD                    VDG+Y +DP K 
Sbjct: 117 RPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEXNCDVXLKATNVDGVYTADPKKD 176
Query: 761 LSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 820
            SA  Y+ ITFDE + K L++ D+TAF+ CR++KL I VF I K G+LKRVI G++EGTL
Sbjct: 177 PSATRYETITFDEALLKNLKVXDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTL 236
Query: 821 VY 822
           V+
Sbjct: 237 VH 238

>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243

Iteration: 1
 Score =  175 bits (443), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 97/236 (41%), Positives = 126/236 (53%), Gaps = 2/236 (0%)
Query: 586 EKEYSLAVLKAQQLGEALMKGDAYXXXXXXXXXXXXXXXXXXXXXXXLAIVIGGGNICRG 645
           E  Y   +LK    GEALM    Y                       +A+VIGGGNI RG
Sbjct: 6   ELSYRRILLKLS--GEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRG 63
Query: 646 ISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI 705
                  +DR T D+MGMLAT+IN+LA+ D L K G    VMSAI I    E +I   AI
Sbjct: 64  AGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAI 123
Query: 706 KYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGIYNSDPNKCLSAII 765
           ++LE+G++ IFA G GNPFFTTD                    VDG+Y+ DP K   A+ 
Sbjct: 124 RHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVR 183
Query: 766 YKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           Y  +T+DEVI + LE+MD+ AF+  RD  LP+R+F + + G L R++ G   GTLV
Sbjct: 184 YDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLV 239

>pdb|3BBN|B Chain B, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 231

Iteration: 1
 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 128/220 (58%)
Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           E++M+AGVHFGH TR WNP+MS YI      IHIINL +T     +A   ++        
Sbjct: 7   EEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQ 66
Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
            L VGTK +A   +A  A+RA   +++++WLGG+LTN+ T +T + + +++ +  T G +
Sbjct: 67  FLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRL 126
Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            +L K++A +  R+   L   +GGIK M  +PD + I+D      A+ E I L IP I +
Sbjct: 127 ARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICL 186
Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
           +DTN +PD  +  IP NDD+  SI L    +V A  + ++
Sbjct: 187 IDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRS 226

>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp Length = 241

Iteration: 1
 Score =  162 bits (410), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/191 (41%), Positives = 119/191 (62%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
           + +VIGGGN+ RG       ++R   D+MGMLAT++N LA+ D L+++ + + +MSAI +
Sbjct: 51  VGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPL 110
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
               +SY    AI  L   +VVI + G GNPFFTTD                    VDG+
Sbjct: 111 NAVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGV 170
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
           + +DP K  +A +Y+++T+ EV+ K+L++MD  AF+  RD KLPIRVF++ K GAL+RV+
Sbjct: 171 FTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVV 230
Query: 813 EGKNEGTLVYE 823
            G+ EGTL+ E
Sbjct: 231 MGEKEGTLITE 241

>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump Length = 241

Iteration: 1
 Score =  162 bits (409), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/191 (41%), Positives = 119/191 (62%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
           + +VIGGGN+ RG       ++R   D+MGMLAT++N LA+ D L+++ + + +MSAI +
Sbjct: 51  VGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPL 110
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
               +SY    AI  L   +VVI + G GNPFFTTD                    VDG+
Sbjct: 111 NGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGV 170
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
           + +DP K  +A +Y+++T+ EV+ K+L++MD  AF+  RD KLPIRVF++ K GAL+RV+
Sbjct: 171 FTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVV 230
Query: 813 EGKNEGTLVYE 823
            G+ EGTL+ E
Sbjct: 231 MGEKEGTLITE 241

>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine Monophosphate Kinase From Mycobacterium Tuberculosis Length = 281

Iteration: 1
 Score =  159 bits (402), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 115/189 (60%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
           +A+VIGGGN  RG   +   ++R+ +DYMGML T++NSLAL D L K GI++ V +AI++
Sbjct: 91  IAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITM 150
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
            +  E Y+PL A+++LE+G+VVIF  G+G P+F+TD                    VDG+
Sbjct: 151 GQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGV 210
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
           +  DP     A +   ++  EV+ + L + D+TAFS C D  +PI VF+++  G + R +
Sbjct: 211 FAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAV 270
Query: 813 EGKNEGTLV 821
            G+  GTLV
Sbjct: 271 RGEKIGTLV 279

>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase Length = 247

Iteration: 1
 Score =  156 bits (395), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 117/191 (61%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
           +++V+GGGN+ RG       ++R   D+MGMLAT++N LA+ D L ++ + + +MSA  +
Sbjct: 50  VSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQL 109
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
               ++Y    AIK L E +VVIF+ G GNPFFTTD                    VDG+
Sbjct: 110 NGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGV 169
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
           Y+ DP K   A +YK +++ EVI K+L++MD +AF+  RD  +PIRVF++ K GAL++V+
Sbjct: 170 YDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVV 229
Query: 813 EGKNEGTLVYE 823
            G  EGT + E
Sbjct: 230 TGTEEGTTICE 240

>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp Length = 241

Iteration: 1
 Score =  148 bits (373), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 110/191 (57%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
           + +VIGGGN+ RG        +R   D+ G LAT+ N LA  D L+++ + + + SAI +
Sbjct: 51  VGVVIGGGNLFRGAGLAKAGXNRVVGDHXGXLATVXNGLAXRDALHRAYVNARLXSAIPL 110
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 752
               +SY    AI  L   +VVI + G GNPFFTTD                    VDG+
Sbjct: 111 NGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGV 170
Query: 753 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
           + +DP K  +A  Y+++T+ EV+ K+L++ D  AF+  RD KLPIRVF+  K GAL+RV+
Sbjct: 171 FTADPAKDPTATXYEQLTYSEVLEKELKVXDLAAFTLARDHKLPIRVFNXNKPGALRRVV 230
Query: 813 EGKNEGTLVYE 823
            G+ EGTL+ E
Sbjct: 231 XGEKEGTLITE 241

>pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio Parahaemolyticus Length = 185

Iteration: 1
 Score =  145 bits (367), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 125/185 (67%)
Query: 828  IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 887
            +I++IKK+ +++M  +++ LK NL KVRTGRA+  +L  I V+Y+   T L ++AN+   
Sbjct: 1    MINEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAE 60
Query: 888  NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 947
            ++ T++I  F+KE++  ++KAI  ++LGLNP   G II V +PPLT+ERR+++VK+++  
Sbjct: 61   DARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGE 120
Query: 948  TEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 1007
             E  ++++R IRRD+N            S D + +AQ +IQKLTD  + +I+++L  KEK
Sbjct: 121  AEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEK 180
Query: 1008 EILTL 1012
            E++ +
Sbjct: 181  ELMEV 185

>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf) From Escherichia Coli Length = 185

Iteration: 1
 Score =  139 bits (350), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 120/183 (65%)
Query: 828  IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 887
            +ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ 
Sbjct: 1    MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60
Query: 888  NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 947
            +S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++  
Sbjct: 61   DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120
Query: 948  TEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 1007
             E+ ++++R +RRD+N+           S D++ R+Q D+QKLTD  I +I   L +KE 
Sbjct: 121  AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180
Query: 1008 EIL 1010
            E++
Sbjct: 181  ELM 183

>pdb|4GD1|Y Chain Y, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 183

Iteration: 1
 Score =  139 bits (349), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/182 (37%), Positives = 119/182 (65%)
Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ +
Sbjct: 2    ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61
Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
            S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++   
Sbjct: 62   SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEA 121
Query: 949  EETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            E+ ++++R +RRD+N+           S D++ R+Q D+QKLTD  I +I   L +KE E
Sbjct: 122  EQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181
Query: 1009 IL 1010
            ++
Sbjct: 182  LM 183

>pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Escherichia Coli, Arg132gly Length = 185

Iteration: 1
 Score =  136 bits (342), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/183 (37%), Positives = 119/183 (65%)
Query: 828  IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 887
            +ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ 
Sbjct: 1    MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60
Query: 888  NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 947
            +S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++  
Sbjct: 61   DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120
Query: 948  TEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 1007
             E+ ++++R + RD+N+           S D++ R+Q D+QKLTD  I +I   L +KE 
Sbjct: 121  AEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180
Query: 1008 EIL 1010
            E++
Sbjct: 181  ELM 183

>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter Pylori Length = 240

Iteration: 1
 Score =  134 bits (336), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 98/161 (60%)
Query: 653 IDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGK 712
           I R++ DYMGMLAT+IN++A+ + L   G+ + V SAI I++  ESYI   AI++LE+G+
Sbjct: 70  IRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGR 129
Query: 713 VVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGIYNSDPNKCLSAIIYKKITFD 772
           VVIF  G GNPFFTTD                    VDGIY+ DPNK   A     ++++
Sbjct: 130 VVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYN 189
Query: 773 EVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 813
           + +   +E+MD TA S  +D KLPI V ++ K G L +VI+
Sbjct: 190 DALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIK 230

>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus Length = 185

Iteration: 1
 Score =  132 bits (332), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/184 (35%), Positives = 120/184 (65%)
Query: 827  MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 886
            M + ++   T+  M  ++++L+ NL  +RTGRAN  +L +++V+Y+     L +IA +T 
Sbjct: 1    MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60
Query: 887  FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 946
             +  T+ +Q +++     I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++ 
Sbjct: 61   PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120
Query: 947  ITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKE 1006
              EE +++IR IRR++ +           S D   RA+ +IQK+TD+FI + +QL   KE
Sbjct: 121  YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180
Query: 1007 KEIL 1010
            +EIL
Sbjct: 181  QEIL 184

>pdb|1YY7|A Chain A, Crystal Structure Of Stringent Starvation Protein A (Sspa), An Rna Polymerase-Associated Transcription Factor Length = 213

Iteration: 1
 Score =  132 bits (331), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/176 (37%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 4   EIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXX 63
           EI  ++  N P ++  +NPY  VP LV+R+L LYES II EY+DERFP+P LM   P   
Sbjct: 37  EIEQVEADNLPQDLIDLNPYRTVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVAR 96
Query: 64  XXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGD 123
                     E + +  LY +E    + +    + AR+++R+ L+++AP+F +  + + +
Sbjct: 97  GSSRLMMHRIEHDWYSLLYKIEQGNAQEA----EAARKQLREELLSIAPVFNETPFFMSE 152
Query: 124 EFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFSRPSYMESLTPAEKIMQ 178
           EFS++D  +APLLWRL   GI  + + S  +K Y  R+F R +++ SLT AE+ M 
Sbjct: 153 EFSLVDCYLAPLLWRLPVLGIEFTGAGSKELKGYMTRVFERDAFLASLTEAEREMH 208

>pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome Recycling Factor (Frr) From Bacillus Anthracis Length = 209

Iteration: 1
 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 110/179 (61%)
Query: 834  KNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTIS 893
            K + +KM   +      L  VR GRA+  +LD +QV Y+   T ++++ANIT+  +  + 
Sbjct: 31   KFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLV 90
Query: 894  IQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 953
            IQP++K     I+KAI +A+LGLNP+  G +I ++ P LT+ERR ++VK++K   EE K+
Sbjct: 91   IQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKV 150
Query: 954  SIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL 1012
            ++R +RRD N+           + D+      DIQK TDK+I +++++  NKEKEI+ +
Sbjct: 151  AVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 209

>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus Anthracis (Ba1797) Length = 255

Iteration: 1
 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDIL-NKSGIISHVMSAIS 691
           ++IVIGGGNI RG   +   IDR  AD +G L TIINSL L  +L +K+     VM++I 
Sbjct: 54  VSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIP 113
Query: 692 IEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDX-XXXXXXXXXXXXXXXXXXXVD 750
                E YI L A+ +L+ G +VIF GG G PF TTD                     VD
Sbjct: 114 FNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVD 173
Query: 751 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR 810
           G++ SDP    SA +Y+K+ +++V+ + +++MD  A    RD  LP  VF+  + G ++R
Sbjct: 174 GVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRR 233
Query: 811 VIEGKNEGTLV 821
           +  G++ GTL+
Sbjct: 234 ICLGEHVGTLI 244

>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum Length = 256

Iteration: 1
 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
           ++IV+GGGNI RG   K  ++DR+ AD MGM+ATIIN LAL + LN   + + V+SAI  
Sbjct: 65  VSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC 124
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXX-XXXVDG 751
           +K +      N  K +E+ +V+IF  G G P+FTTD                     VDG
Sbjct: 125 DKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDG 184
Query: 752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRV 811
           +Y+SDP    +A  Y+ ITF+  +++ L++MD+TA + C++  + + VF+I K  A+  V
Sbjct: 185 VYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDV 244
Query: 812 IEGKNEGTLV 821
           +E KN+ T+V
Sbjct: 245 LEKKNKYTIV 254

>pdb|3LYK|A Chain A, Structure Of Stringent Starvation Protein A Homolog From Haemophilus Influenzae Length = 216

Iteration: 1
 Score =  127 bits (319), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/174 (37%), Positives = 105/174 (60%), Gaps = 9/174 (5%)
Query: 3   FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
           +E  ++DL   P+++  +NPYG VP LV+RDL+L+ S II EY+DERFP+P L    P  
Sbjct: 32  YENAEVDLQALPEDLXELNPYGTVPTLVDRDLVLFNSRIIXEYLDERFPHPPLXQVYPVS 91
Query: 63  XXXXXXXXXNFEKEIFIHLYMLEN--ERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYM 120
                      E++ +  L   EN  E+ KTS      A +++++ L+ +AP+F +  Y 
Sbjct: 92  RAKDRLLXLRIEQDWYPTLAKAENGTEKEKTS------ALKQLKEELLGIAPIFQQXPYF 145
Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFSRPSYMESLTPA 173
             +EF ++D  +APLLW+L + G+  + + S  IK Y ER+F+R S+++S+  A
Sbjct: 146 XNEEFGLVDCYVAPLLWKLKHLGVEFTGTGSKAIKAYXERVFTRDSFLQSVGEA 199

>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase (Ump-Kinase) From Streptococcus Pyogenes Length = 252

Iteration: 1
 Score =  127 bits (318), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
Query: 633 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 692
           +A+VIGGGN+ RG        DR  ADY G L T+ N+L   D L   G+ + V +AI  
Sbjct: 49  IALVIGGGNLWRGEPAADAGXDRVQADYTGXLGTVXNALVXADSLQHYGVDTRVQTAIPX 108
Query: 693 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXX-VDG 751
           +   E YI   A+++LE+ ++V+F  GIG+P+F+TD                     VDG
Sbjct: 109 QNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILXAKNGVDG 168
Query: 752 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRV 811
           +YN+DP K  +A+ + ++T  EVI + L+I D+TA +   D  + + VF+  ++G ++RV
Sbjct: 169 VYNADPKKDANAVKFDELTHGEVIKRGLKIXDATASTLSXDNDIDLVVFNXNEAGNIQRV 228
Query: 812 IEGKNEGTLV 821
           + G++ GT V
Sbjct: 229 VFGEHIGTTV 238

>pdb|3LYP|A Chain A, Structure Of Stringent Starvation Protein A Homolog From Pseudomonas Fluorescens Length = 215

Iteration: 1
 Score =  125 bits (315), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 102/177 (57%), Gaps = 2/177 (1%)
Query: 4   EIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXX 63
           EI  ++   +P  +  +NPYG +P LV+RDL L+ES ++ EY+DER+P+P L+   P   
Sbjct: 35  EIISVEAGRQPPKLIEVNPYGSLPTLVDRDLALWESTVVXEYLDERYPHPPLLPVYPVAR 94
Query: 64  XXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGD 123
                     +++    + ++ + R K + +   +AR+E+R+ L  ++PLF    + L +
Sbjct: 95  ANSRLLIHRIQRDWCGQVDLILDPRTKEAAR--VQARKELRESLTGVSPLFADKPFFLSE 152
Query: 124 EFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAG 180
           E S++D  + P+LWRL   GI L + A PL+ Y ER F+R ++  SL+  E+  + G
Sbjct: 153 EQSLVDCCLLPILWRLPVLGIELPRQAKPLLDYXERQFAREAFQASLSGVERDXREG 209

>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289

Iteration: 1
 Score =  122 bits (307), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 120/224 (53%), Gaps = 27/224 (12%)
Query: 387 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 442
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R    IK  KK  N+    A
Sbjct: 2   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 57
Query: 443 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKK-----IAKLITENTPXXXXXXX 497
            DGVI   I    G ++E+NC+TDFVAK+  F  F+ K     +A  IT+          
Sbjct: 58  ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITD---------- 107
Query: 498 XXXXXXXXXTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNE 557
                      +E+   L+++IGENI IRR    +  + L SY H  +IGV+V   G +E
Sbjct: 108 ---VEVLKAQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADE 163
Query: 558 SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 601
             VK +AMH+AA KP  +  + +  +++EKEY + +  A Q G+
Sbjct: 164 ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGK 207

>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678

Iteration: 1
 Score =  122 bits (306), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 27/223 (12%)
Query: 387 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 442
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R    IK  KK  N+    A
Sbjct: 2   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 57
Query: 443 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKK-----IAKLITENTPXXXXXXX 497
            DGVI   I    G ++E+NC+TDFVAK+  F  F+ K     +A  IT+          
Sbjct: 58  ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITD---------- 107
Query: 498 XXXXXXXXXTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNE 557
                      +E+   L+++IGENI IRR    +  + L SY H  +IGV+V   G +E
Sbjct: 108 ---VEVLKAQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADE 163
Query: 558 SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 600
             VK +AMH+AA KP  +  + +  +++EKEY + +  A Q G
Sbjct: 164 ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSG 206

>pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 282

Iteration: 1
 Score =  119 bits (298), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 17/219 (7%)
Query: 387 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 442
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R    IK  KK  N+    A
Sbjct: 1   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 56
Query: 443 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPXXXXXXXXXXXX 502
            DGVI   I    G ++E+NC+TDFVAK+  F  F+ K+                     
Sbjct: 57  ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAG--------KITDVE 108
Query: 503 XXXXTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKD 562
                 +E+   L+++IGENI IRR    +  + L SY H  +IGV+V   G +E  VK 
Sbjct: 109 VLKAQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADEELVKH 167
Query: 563 VAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 601
           +AMH+AA KP  +  + +  +++EKEY + +  A Q G+
Sbjct: 168 IAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGK 206

>pdb|4DEJ|A Chain A, Crystal Structure Of Glutathione Transferase-Like Protein Il0419 (Target Efi-501089) From Idiomarina Loihiensis L2tr Length = 231

Iteration: 1
 Score =  119 bits (298), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 14  PDNIFRMNPYGQV-PILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXXXN 72
           P+++ ++NPY +  P LV+R+L+LY + II EY+DERFP+P LM   P            
Sbjct: 49  PEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYR 108
Query: 73  FEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVI 132
            E++     Y L  +  K       +AR+E+++ +++LAP+F    Y + +EFS++D  +
Sbjct: 109 IERD----WYSLAEKIQKND----AQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYL 160
Query: 133 APLLWRLDYYGINLSKSASPLIK-YAERIFSRPSYMESLTPAEK 175
           APLLWRL  YGI+L    +  IK Y  R+F R ++ +SLT  EK
Sbjct: 161 APLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEK 204

>pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis Length = 185

Iteration: 1
 Score =  118 bits (295), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 105/176 (59%)
Query: 835  NTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISI 894
            + ++KM   + + +++L  +RTGRAN GM   I + Y+   T + ++A+I +  +  + I
Sbjct: 8    DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67
Query: 895  QPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKIS 954
            +P+E      I+ AI  ++LG+NPT  G +I V++P LT+ERR E+VK  K+  EE K+S
Sbjct: 68   KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVS 127
Query: 955  IRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 1010
            +R IRR + E             D   RA+ D+ K T +++ +I++L+ +KE E+L
Sbjct: 128  VRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELL 183

>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Recycling Factor, Rrf Length = 185

Iteration: 1
 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 113/177 (63%)
Query: 834  KNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTIS 893
            K  K+KM  T++ +++ L+K+RTG+ +  +L+ I+V Y+   T + ++A I++    T+ 
Sbjct: 7    KEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLV 66
Query: 894  IQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 953
            I+P++K + S+I+KAIN ++LGLNP   GN+I +  P  T E+RE+ VK  K I EE KI
Sbjct: 67   IKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKI 126
Query: 954  SIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 1010
            +IR IRR+  +             D+  R + +IQKLTD+FI +++++   K++EI+
Sbjct: 127  AIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIM 183

>pdb|3MDK|A Chain A, Structure Of Stringent Starvation Protein A (Sspa) From Pseudomonas Putida Length = 217

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 2/172 (1%)
Query: 4   EIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXX 63
           ++ D+D  + P  +  +NPYG VP LV+RDL LYES ++ EY++ER+P+P L    P   
Sbjct: 35  QLIDVDPAHLPRKLAEVNPYGSVPTLVDRDLALYESTVVXEYLEERYPHPPLXPVYPVAR 94
Query: 64  XXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGD 123
                     +++       + + R+  + +    AR+ +R+ L  ++PLF +      D
Sbjct: 95  GNSRLLXHRIQRDWCALADTVLDPRSSEAAR--TEARKALRESLTGVSPLFSEFACFXSD 152
Query: 124 EFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEK 175
           E S++D  + P+LWRL   GI L + A PL+ Y ER F+R  +  SL+  E+
Sbjct: 153 EQSLVDCCLLPILWRLPVLGIELPRQAKPLLDYXERQFAREPFQASLSSVER 204

>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor Length = 184

Iteration: 1
 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 115/184 (62%), Gaps = 4/184 (2%)
Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            + DI K  ++ M   ++  K  +  +RT RA+  +++ I+V+Y+     + ++  I++  
Sbjct: 5    LEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPE 64
Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
             + I IQ +++     I+KAI E  L LNPT+QGN+I V++PPLT+ERR E+V+L+  IT
Sbjct: 65   HNQIVIQVWDQNAVPAIEKAIRE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKIT 123
Query: 949  EETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            EE ++ +R +RR++ E           S D + RA   +QKLTDK+I EIN+L+  KEKE
Sbjct: 124  EEARVRVRNVRREAKE---MIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEKE 180
Query: 1009 ILTL 1012
            I+++
Sbjct: 181  IMSV 184

>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 394 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYI-- 451
           + +LR  T A +M+ K+AL +A     KA ++LR +   K    ++R A++G+I  YI  
Sbjct: 7   IKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHH 66
Query: 452 SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP 490
           +++VG LVE+NCETDFVA+N  F   +K +A  I    P
Sbjct: 67  NQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNP 105

>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 15/80 (18%)
Query: 542 HDNKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKE---Y 589
           H+ ++GV+VE N +          ++  KD+AMHIA M P  +S+++IP + +EKE   Y
Sbjct: 66  HNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIY 125
Query: 590 SLAVL---KAQQLGEALMKG 606
             A L   K QQ+ E + +G
Sbjct: 126 IQAALNEGKPQQIAEKIAEG 145

>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens Length = 241

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 7/179 (3%)
Query: 4   EIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
           E+ +I+L NKP+  F+ NP+G VP+L   +  ++YES I  EY+DE +P  +L+  DP  
Sbjct: 50  EVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYE 109
Query: 63  XXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYM 120
                     F K   +    + ++ NK    G K   EE R     L  +    K  + 
Sbjct: 110 KACQKMILELFSKVPSLVGSFIRSQ-NKEDYAGLK---EEFRKEFTKLEEVLTNKKTTFF 165
Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQA 179
            G+  SM+D +I P   RL+   +N     +P +K           + +L  +EK  Q 
Sbjct: 166 GGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQG 224

>pdb|3VLN|A Chain A, Human Glutathione Transferase O1-1 C32s Mutant In Complex With Ascorbic Acid Length = 241

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 7/179 (3%)
Query: 4   EIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
           E+ +I+L NKP+  F+ NP+G VP+L   +  ++YES I  EY+DE +P  +L+  DP  
Sbjct: 50  EVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYE 109
Query: 63  XXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYM 120
                     F K   +    + ++ NK    G K   EE R     L  +    K  + 
Sbjct: 110 KACQKMILELFSKVPSLVGSFIRSQ-NKEDYAGLK---EEFRKEFTKLEEVLTNKKTTFF 165
Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQA 179
            G+  SM+D +I P   RL+   +N     +P +K           + +L  +EK  Q 
Sbjct: 166 GGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQG 224

>pdb|3LFL|A Chain A, Crystal Structure Of Human Glutathione Transferase Omega 1, Delta 155 Length = 240

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 6/178 (3%)
Query: 4   EIRDIDLFNKPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
           E+ +I+L NKP+  F+ NP+G VP+L   +  ++YES I  EY+DE +P  +L+  DP  
Sbjct: 50  EVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYE 109
Query: 63  XXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF-LKNKYML 121
                     F K   +    + ++ NK    G K   EE R     L  L   K  +  
Sbjct: 110 KACQKMILELFSKVPSLVGSFIRSQ-NKEDYAGLK---EEFRKEFTKLEVLTNKKTTFFG 165
Query: 122 GDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQA 179
           G+  SM+D +I P   RL+   +N     +P +K           + +L  +EK  Q 
Sbjct: 166 GNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQG 223

>pdb|3QAG|A Chain A, Human Glutathione Transferase O2 With Glutathione -New Crystal Form Length = 239

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Query: 4   EIRDIDLFNKPDNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQLMSSDPXX 62
           E+ +I+L NKP+  +  +P+G +P+L   +  ++YES I  EY+D+ +P  +L   DP  
Sbjct: 50  EVVNINLRNKPEWYYTKHPFGHIPVLETSQSQLIYESVIACEYLDDAYPGRKLFPYDPYE 109
Query: 63  XXXXXXXXXNFEKEIFIH---LYMLENERNKTSIKGYKRAR----EEIRDRLITLAPLFL 115
                     F K   +    L  L + R  T++K   R      EEI +        + 
Sbjct: 110 RARQKMLLELFSKVPHLTKECLVALRSGRESTNLKAALRQEFSNLEEILE--------YQ 161
Query: 116 KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK 155
              +  G   SM+D ++ P   RLD YGI    S +P ++
Sbjct: 162 NTTFFGGTSISMIDYLLWPWFERLDVYGILDCVSHTPALR 201

>pdb|1Y69|8 Chain 8, Rrf Domain I In Complex With The 50s Ribosomal Subunit From Deinococcus Radiodurans Length = 113

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 933  TKERREEIVKLIKNITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTD 992
            T+ERR+++ K+++   E+ ++++R +RRD+N+           S D++ R+Q D+QKLTD
Sbjct: 34   TEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTD 93
Query: 993  KFILEINQLLINKEKEIL 1010
              I +I   L +KE E++
Sbjct: 94   AAIKKIEAALADKEAELM 111

>pdb|1XB2|B Chain B, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 291

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 396 ELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGK----KILNISNRNAKDGVIAIYI 451
           +LR KT    + CKKAL    G L +AE  L  +  K    K   +  R  K+G+I +  
Sbjct: 10  KLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQ 69
Query: 452 SEKVGSLVEINCETDFVAKNNEFIKFSKKIA 482
                 LVE+NCETDFV++N +F +  +++A
Sbjct: 70  EGDTTVLVEVNCETDFVSRNLKFQQLVQQVA 100

>pdb|3QAV|A Chain A, Crystal Structure Of A Glutathione S-transferase From Antarctic Clam Laternula Elliptica Length = 243

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 12  NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXXX 71
           +K + I  +NP GQVP   + D+++ ES  I  Y++E++P   L  SD            
Sbjct: 64  HKSEEILELNPRGQVPTFTDGDVVVNESTAICMYLEEKYPKVPLFPSDTTIRAK------ 117
Query: 72  NFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK------------- 118
                  ++  M E     T++  + + + + +D   ++  + LK K             
Sbjct: 118 -------VYQRMFETSNISTNVMEFVQYKMKNKD---SIDQVLLKEKKDKAHVELGHWEN 167
Query: 119 -------YMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
                  ++   EF+M DV   P++  +   G NL  S   + KY   +  RP+ ++++ 
Sbjct: 168 YLKQTGGFVATKEFTMADVFFFPMVALIVRQGANLKDSYPNIFKYYNMMMDRPTIVKTMP 227
Query: 172 P 172
           P
Sbjct: 228 P 228

>pdb|1VI6|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 57/250 (22%)
Query: 168 ESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQ 226
           E L P +  + AGVH G Q +  +  M  +IF  R + ++++++ K       A +++ +
Sbjct: 8   EYLVPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR 65
Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
              SK  +L V  ++ A   +   +   G  +I  R++ G LTN                
Sbjct: 66  YEPSK--ILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTN---------------- 107
Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
                          L  YR+                 P+ +F+ D    K AVSEA  +
Sbjct: 108 -------------PMLSEYRE-----------------PEVVFVNDPAIDKQAVSEATAV 137
Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM 406
            IP++ + D+N+S   ++ VIP N+   +++A+        +L A+ + ++R +     +
Sbjct: 138 GIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVY------WLLAREIAKIRGQDFTYSI 191
Query: 407 ECKKALIEAN 416
           E  +A +E  
Sbjct: 192 EDFEAELEGG 201

>pdb|1AW9|A Chain A, Structure Of Glutathione S-Transferase Iii In Apo Form Length = 216

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 30/191 (15%)
Query: 1   MDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS 57
           +DFEI  +DL    +K  +   +NP+GQ+P LV+ D +L+ES  IN YI  ++      +
Sbjct: 26  LDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYIASKY------A 79
Query: 58  SDPXXXXXXXXXXXNFEKEIFI---HLY--------------MLENERNKTSIKGYKRAR 100
           S+              E  + +   H Y              +L    +   +  +    
Sbjct: 80  SEGTDLLPATASAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHA--- 136
Query: 101 EEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAER 159
           E++   L        +NKY+ GDEF++ D   A  L  L         +A P +K + E 
Sbjct: 137 EQLAKVLDVYEAHLARNKYLAGDEFTLADANHASYLLYLSKTPKAGLVAARPHVKAWWEA 196
Query: 160 IFSRPSYMESL 170
           I +RP++ +++
Sbjct: 197 IVARPAFQKTV 207

>pdb|1VI5|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 57/249 (22%)
Query: 168 ESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQ 226
           E L P +  + AGVH G Q +  + K   +IF  R + ++++++ K       A +++ +
Sbjct: 8   EYLVPPDDYLAAGVHIGTQIKTGDXK--KFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR 65
Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
              SK  +L V  ++ A   +   +   G  +I  R++ G LTN                
Sbjct: 66  YEPSK--ILLVAARQYAHKPVQXFSKVVGSDYIVGRFIPGTLTN---------------- 107
Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
                          L  YR+                 P+ +F+ D    K AVSEA  +
Sbjct: 108 -------------PXLSEYRE-----------------PEVVFVNDPAIDKQAVSEATAV 137
Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM 406
            IP++ + D+N+S   ++ VIP N+   +++A+        +L A+ + ++R +     +
Sbjct: 138 GIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVY------WLLAREIAKIRGQDFTYSI 191
Query: 407 ECKKALIEA 415
           E  +A +E 
Sbjct: 192 EDFEAELEG 200

>pdb|4IQ1|A Chain A, Crystal Structure Of Glutathione S-transferase Mha_0454 (target Efi- 507015) From Mannheimia Haemolytica, Substrate-free Length = 231

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 11  FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPXXXXXXXXXX 70
           F K      +NP G VP+LV+ DL L ++  I  Y+DE +P  +L  S            
Sbjct: 60  FIKSAEYLALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTARDKAKAARW 119
Query: 71  XNF----EKEIFIHLYMLEN--ERNKTSIKGYK-RAREEIRDRLITLAPLFLKNKYMLGD 123
             F      + F+ L+ L +  E N+T  K  + ++ E+I ++L   A   L+N    G+
Sbjct: 120 LAFFNSDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQL-AFANAHLENHIFFGE 178
Query: 124 EFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERI 160
           E S+ D  +  +L      G++ S   S L  + +R+
Sbjct: 179 EISVADAYLYIMLNWCRLLGLDFSH-LSQLSAFMQRV 214

>pdb|3UAP|A Chain A, Crystal Structure Of Glutathione Transferase (Target Efi-501774) From Methylococcus Capsulatus Str. Bath Length = 227

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 41/201 (20%)
Query: 1   MDFEIRDIDLFNKPD----NIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQL 55
           +DFE+ ++DL  K      +  ++NP G VP L ++   +L E  +I +Y+ +  P   L
Sbjct: 25  LDFELENVDLGTKKTGSGADFLQVNPKGYVPALQLDDGQVLTEDQVILQYLADLKPESGL 84
Query: 56  MSSDPXXXXXXXXXXXNFEKEIFIH-LYMLENERNKT----------------SIKGYKR 98
           M                FE+   +  L  +  E +KT                ++    R
Sbjct: 85  MPPS-----------GTFERYRLLEWLAFISTEIHKTFGPFWNPESPEASKQIALGLLSR 133
Query: 99  AREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAE 158
             + + DRL    P      +++GD +S+ D  ++ +L   +Y  I+LSK    ++ Y E
Sbjct: 134 RLDYVEDRLEAGGP------WLMGDRYSVADAYLSTVLGWCEYLKIDLSKWPR-ILAYLE 186
Query: 159 RIFSRPSYMESLTPAEKIMQA 179
           R  +RP+ +++   AE ++QA
Sbjct: 187 RNQARPA-VQAAMKAEGLIQA 206

>pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 442 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP 490
           A++G+I  YI  +++VG LVE+NCETDFVA+N  F   +K +A  I    P
Sbjct: 1   AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNP 51

>pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 15/80 (18%)
Query: 542 HDNKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKE---Y 589
           H+ ++GV+VE N +          ++  KD+AMHIA M P  +S+++IP + +EKE   Y
Sbjct: 12  HNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIY 71
Query: 590 SLAVL---KAQQLGEALMKG 606
             A L   K QQ+ E + +G
Sbjct: 72  IQAALNEGKPQQIAEKIAEG 91

>pdb|3LF9|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1is1a_001_c Length = 121

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 933  TKERREEIVKLIKNITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTD 992
            T+ERR+++VK+++   E  ++++R I RD+             +  +  +A ++IQKLTD
Sbjct: 34   TEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTD 93
Query: 993  KFILEINQLLINKEKEIL 1010
              + +I+++L  KEKE++
Sbjct: 94   VAVKKIDEVLAAKEKELM 111

>pdb|4J2F|A Chain A, Crystal Structure Of A Glutathione Transferase Family Member From Ricinus Communis, Target Efi-501866 Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 3   FEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPX 61
           +E  + DLFNK   + + NP + ++P+LV     + ES II EY+DE +P   L+ SDP 
Sbjct: 30  YEYVEEDLFNKSPLLLQYNPVHKKIPVLVHGGKPICESTIILEYLDETWPENPLLPSDPH 89
Query: 62  XXXXXXXXXXNFEKE--IFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKY 119
                       E +     +++  + E  + ++K      + I +  + ++     +KY
Sbjct: 90  ERAVARFWVKFIEDKGTAIWNIFRTKGEELEKAVKNCLEVLKTIEEHAMGVS----DDKY 145
Query: 120 MLGDEFSMLDV 130
             GD+  ++D+
Sbjct: 146 FGGDKIGIVDI 156

>pdb|2VO4|A Chain A, Glutathione Transferase From Glycine Max Length = 219

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 20/187 (10%)
Query: 3   FEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDE----RFPYPQLMS 57
           +E ++ DL NK   + +MNP + ++P+L+     + ES I  +YI+E    R P   L+ 
Sbjct: 30  YEYKEEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIEEVWNDRNP---LLP 86
Query: 58  SDPXXXXXXXXXXXNFEKEIFIHLYMLENERNKTSIKGYKR--AREEIRDRLITLAPLFL 115
           SDP             +K+I+      +  R   + KG ++  A++E  + L  L     
Sbjct: 87  SDPYQRAQTRFWADYVDKKIY------DLGRKIWTSKGEEKEAAKKEFIEALKLLEEQLG 140
Query: 116 KNKYMLGDEFSMLDVVIAPLL-WRLDY--YG-INLSKSASPLIKYAERIFSRPSYMESLT 171
              Y  GD    +D+ + P   W   Y  +G +N+       I +A+R   + S  +SL 
Sbjct: 141 DKTYFGGDNLGFVDIALVPFYTWFKAYETFGTLNIESECPKFIAWAKRCLQKESVAKSLP 200
Query: 172 PAEKIMQ 178
             +K+ +
Sbjct: 201 DQQKVYE 207

>pdb|4G9H|A Chain A, Crystal Structure Of Glutahtione S-Transferase Homolog From Yersinia Pestis, Target Efi-501894, With Bound Glutathione Length = 211

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 10/189 (5%)
Query: 1   MDFEIRDIDLFNKPD----NIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQL 55
           +DF I  +DL  K      +   +NP GQVP LV  D  +L E   I +Y+ ++ P   L
Sbjct: 26  LDFSIERVDLVTKKTETGADYLSINPKGQVPALVLDDGSLLTEGVAIVQYLADKVPDRHL 85
Query: 56  MSSDPXXXXXXXXXXXNF-EKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           ++              NF   E+      L N       K     RE +  +   +  + 
Sbjct: 86  IAPSGTLSRYHAIEWLNFIATELHKGFSPLFNPNTPDEYKTI--VRERLDKQFSYVDSVL 143
Query: 115 LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAE 174
            ++ Y+LG +FS+ D  +  +    +   + + K  S L +Y  R+  RP+   +L  AE
Sbjct: 144 AEHDYLLGKKFSVADAYLFTVSRWANALNLQI-KERSHLDQYMARVAERPAVKAALA-AE 201
Query: 175 KIMQAGVHF 183
            I    ++F
Sbjct: 202 DIKAENLYF 210

>pdb|3TOT|A Chain A, Crystal Structure Of Glutathione Transferase (Target Efi-501058) From Ralstonia Solanacearum Gmi1000 Length = 226

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 7/183 (3%)
Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQLM--S 57
           +D++    D++N    I + NP G+VP LV  D   L++S +I EY D   P  +L+  S
Sbjct: 26  IDYQFVLEDVWNADTQIHQFNPLGKVPCLVMDDGGALFDSRVIAEYADTLSPVARLIPPS 85
Query: 58  SDPXXXXXXXXXXXNFEKEIFIHLYMLENERN--KTSIKGYKRAREEIRDRLITLAPLFL 115
                         +   +  + L + + +R   + S     R   +I + L  ++    
Sbjct: 86  GRERVEVRCWEALADGLLDAAVALRVEQTQRTPEQRSESWITRQHHKIDEALKAMSRGLA 145
Query: 116 KNKYMLGDEFSMLDVVIAPLLWRLDYY--GINLSKSASPLIKYAERIFSRPSYMESLTPA 173
              +  G+  ++ D+ +   L  LD+    ++  +  + L  +  RI  RPS++E+   A
Sbjct: 146 DRTWCNGNHLTLADIAVGCALAYLDFRQPQVDWREQHANLAAFYTRIEKRPSFLETQPQA 205
Query: 174 EKI 176
           E +
Sbjct: 206 ENL 208

>pdb|1OYJ|A Chain A, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In Complex With Glutathione. Length = 231

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 1  MDFEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERFP-YPQLM 56
          ++FE R+ DL NK D + R NP + ++P+L+     + ES +I +Y+D+ FP  P L+
Sbjct: 30 LEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLL 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1012
3r8n_B	218	30S ribosomal protein S2; protein biosynthesis, RN	1e-119
2vqe_B	256	30S ribosomal protein S2; tRNA-binding, rRNA-bindi	1e-118
3bbn_B	231	Ribosomal protein S2; small ribosomal subunit, spi	1e-117
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	8e-75
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	1e-74
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	2e-73
3nwy_A	281	Uridylate kinase; allosterically activated form, A	4e-73
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	5e-73
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	1e-72
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	6e-72
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	1e-71
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	7e-70
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	6e-69
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	2e-68
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	2e-68
1wqg_A	185	Ribosome recycling factor; translation factor, tri	3e-68
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	5e-68
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	5e-68
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	1e-67
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	2e-67
3lyp_A	215	Stringent starvation protein A; structural genomic	2e-64
2ij9_A	219	Uridylate kinase; structural genomics, protein str	2e-62
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	5e-62
1xb2_B	291	EF-TS, elongation factor TS, mitochondrial, EF-TSM	7e-61
3lyk_A	216	Stringent starvation protein A homolog; structural	1e-60
1yy7_A	213	SSPA, stringent starvation protein A; GST fold, tr	3e-60
4dej_A	231	Glutathione S-transferase related protein; transfe	9e-58
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	2e-56
1vi6_A	208	30S ribosomal protein S2P; structural genomics, ri	3e-56
2xzm_B	241	RPS0E; ribosome, translation; 3.93A {Tetrahymena t	3e-52
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	6e-52
3cbu_A	214	Probable GST-related protein; thioredoxin fold, GS	4e-51
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	5e-50
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	9e-50
3tou_A	226	Glutathione S-transferase protein; GSH binding sit	1e-49
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	3e-49
2zkq_b	295	40S ribosomal protein SA; protein-RNA complex, 40S	3e-48
2vo4_A	219	2,4-D inducible glutathione S-transferase; herbici	5e-48
3lxz_A	229	Glutathione S-transferase family protein; structur	2e-47
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	4e-47
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	5e-47
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	7e-47
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	3e-43
2cz2_A	223	Maleylacetoacetate isomerase; structural genomics,	8e-47
3ubk_A	242	Glutathione transferase; GSH binding; 1.95A {Lepto	5e-46
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	1e-45
3r2q_A	202	Uncharacterized GST-like protein YIBF; transferase	1e-45
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-45
1k0m_A	241	CLIC1, NCC27, chloride intracellular channel prote	5e-45
3bch_A	253	40S ribosomal protein SA; laminin receptor, P40 ri	4e-44
1gwc_A	230	Glutathione S-transferase TSI-1; herbicide detoxif	2e-42
3fy7_A	250	Chloride intracellular channel protein 3; GST, glu	2e-41
3lhp_S	123	4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun	2e-41
1oyj_A	231	Glutathione S-transferase; herbicide detoxificatio	2e-41
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	1e-40
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	1e-38
3lf9_A	121	4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu	1e-37
3niv_A	222	Glutathione S-transferase; structural genomics, PS	8e-35
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	1e-32
2yv7_A	260	CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c	3e-32
3m0f_A	213	Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu	7e-31
1aip_C	196	EF-TS, elongation factor TS; nucleotide exchange,	1e-28
1aip_C	196	EF-TS, elongation factor TS; nucleotide exchange,	2e-18
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	3e-26
3ibh_A	233	GST-II, saccharomyces cerevisiae GTT2; glutathione	4e-26
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	1e-25
2yv9_A	291	Chloride intracellular channel EXC-4; chloride ION	3e-25
1wih_A	84	Mitochondrial ribosome recycling factor; structura	2e-23
2dsa_A	203	Glutathione S-transferase; HET: GSH HPX; 2.10A {Bu	8e-23
2x64_A	207	Glutathione-S-transferase; detoxification enzyme;	1e-21
2pvq_A	201	Glutathione S-transferase; xenobiotics detoxificat	5e-21
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	8e-21
1pmt_A	203	PMGST, GST B1-1, glutathione transferase; glutathi	2e-20
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	5e-20
1n2a_A	201	Glutathione S-transferase; HET: GTS; 1.90A {Escher	7e-20
3uar_A	227	Glutathione S-transferase; GSH binding site; HET:	9e-20
4g9h_A	211	Glutathione S-transferase; GST, enzyme function in	2e-19
3n5o_A	235	Glutathione transferase; seattle structural genomi	4e-19
1f2e_A	201	Glutathione S-transferase; GST complexed with glut	4e-19
3lsz_A	225	Glutathione S-transferase; xenobiotic, biodegradat	9e-19
1aw9_A	216	Glutathione S-transferase III; herbicide detoxific	1e-18
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	3e-18
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	4e-18
2ycd_A	230	Glutathione S-transferase; SOIL bacteria, herbicid	5e-17
3ic8_A	310	Uncharacterized GST-like proteinprotein; glutathio	2e-16
2c3n_A	247	Glutathione S-transferase theta 1; glutathione tra	8e-16
2uz8_A	174	Eukaryotic translation elongation factor 1 epsilon	1e-14
1tfe_A	145	Elongation factor TS; 1.70A {Thermus thermophilus}	4e-14
1tfe_A	145	Elongation factor TS; 1.70A {Thermus thermophilus}	3e-10
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	7e-14
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	3e-13
1nhy_A	219	EF-1-gamma 1, elongation factor 1-gamma 1; protein	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	9e-12
1yq1_A	208	Glutathione S-transferase; nematoda, structural ge	1e-11
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	1e-11
2a2r_A	210	Glutathione S-transferase P; detoxification, nitri	2e-11
1pn9_A	209	GST class-delta, glutathione S-transferase 1-6; pr	3e-11
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	5e-11
1vf1_A	229	Glutathione S-transferase 3; detoxification; HET:	9e-11
1gsu_A	219	GST, CGSTM1-1, class-MU glutathione S-transferase;	1e-10
3iso_A	218	Putative glutathione transferase; GST; HET: GSH; 1	2e-10
1k3y_A	221	GSTA1-1, glutathione S-transferase A1; S-hexyl glu	2e-10
1r5a_A	218	Glutathione transferase; glutathione S-transferase	2e-10
1dug_A	234	Chimera of glutathione S-transferase-synthetic lin	2e-10
1b8x_A	280	Protein (AML-1B); nuclear matrix targeting signal	2e-10
3gtu_B	224	Glutathione S-transferase; conjugation, detoxifica	3e-10
2fhe_A	216	GST, glutathione S-transferase; transferase-substr	3e-10
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	6e-10
1b48_A	221	GST, mgsta4-4, protein (glutathione S-transferase)	6e-10
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	7e-10
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	9e-10
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	2e-09
3ik7_A	222	Glutathione S-transferase A4; human GST A4-4, enzy	2e-09
1okt_A	211	Glutathione S-transferase; GST; 1.9A {Plasmodium f	2e-09
2fno_A	248	AGR_PAT_752P; thioredoxin fold, GST C-terminal dom	3e-09
1tu7_A	208	Glutathione S-transferase 2; HET: GSH; 1.50A {Onch	3e-09
2c4j_A	218	Glutathione S-transferase MU 2; glutathione transf	4e-09
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	5e-09
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	1e-08
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	1e-08
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	2e-08
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	2e-08
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	3e-08
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	3e-08
3f6d_A	219	Adgstd4-4, glutathione transferase GST1-4; HET: GT	1e-07
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	1e-07
1m0u_A	249	GST2 gene product; flight muscle protein, sigma, t	1e-07
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	2e-07
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	2e-07
3m8n_A	225	Possible glutathione S-transferase; PSI-II, struct	3e-07
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	1e-06
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	2e-06
3h1n_A	252	Probable glutathione S-transferase; APC84167, bord	3e-06
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	3e-06
1oe8_A	211	Glutathione S-transferase; schistosomiasis, detoxi	1e-05
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	3e-05
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	6e-05

>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Length = 256

 Score =  361 bits (929), Expect = e-118
 Identities = 100/231 (43%), Positives = 148/231 (64%)

Query: 177 MQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLF 236
           ++AGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    GT+LF
Sbjct: 11  LEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILF 70

Query: 237 VGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKL 296
           VGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  I + 
Sbjct: 71  VGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEER 130

Query: 297 SKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDT 356
            KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I + DT
Sbjct: 131 PKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADT 190

Query: 357 NHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIME 407
           +  PD ++Y+IPGNDD+ +SI L     VD  + A+      S + A + E
Sbjct: 191 DSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE 241

>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 231

 Score =  357 bits (918), Expect = e-117
 Identities = 82/216 (37%), Positives = 124/216 (57%)

Query: 177 MQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLF 236
           M+AGVHFGH TR WNP+MS YI      IHIINL +T     +A   ++         L 
Sbjct: 10  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLI 69

Query: 237 VGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKL 296
           VGTK +A   +A  A+RA   +++++WLGG+LTN+ T +T + + +++ +  T G + +L
Sbjct: 70  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 129

Query: 297 SKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDT 356
            K++A +  R+   L   +GGIK M  +PD + I+D      A+ E I L IP I ++DT
Sbjct: 130 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 189

Query: 357 NHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           N +PD  +  IP NDD+  SI L    +V A  + +
Sbjct: 190 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGR 225

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247

 Score =  245 bits (627), Expect = 8e-75
 Identities = 103/224 (45%), Positives = 153/224 (68%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL   D   I+ +I+  +  EI E+V  G+E+++V+GGGN+ RG       ++R   D
Sbjct: 17  GEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGD 76

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           +MGMLAT++N LA+ D L ++ + + +MSA  +    ++Y    AIK L E +VVIF+ G
Sbjct: 77  HMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAG 136

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
            GNPFFTTD+TA LR  EI+A+++LKATKVDG+Y+ DP K   A +YK +++ EVI K+L
Sbjct: 137 TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKEL 196

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 823
           ++MD +AF+  RD  +PIRVF++ K GAL++V+ G  EGT + E
Sbjct: 197 KVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE 240

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243

 Score =  245 bits (626), Expect = 1e-74
 Identities = 111/222 (50%), Positives = 148/222 (66%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEALM    Y I+  +I  +  E+ E    G ++A+VIGGGNI RG       +DR T D
Sbjct: 18  GEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGD 77

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           +MGMLAT+IN+LA+ D L K G    VMSAI I    E +I   AI++LE+G++ IFA G
Sbjct: 78  HMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAG 137

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
            GNPFFTTD+ AALRA EI A+++LKATKVDG+Y+ DP K   A+ Y  +T+DEVI + L
Sbjct: 138 TGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQGL 197

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           E+MD+ AF+  RD  LP+R+F + + G L R++ G   GTLV
Sbjct: 198 EVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLV 239

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239

 Score =  241 bits (616), Expect = 2e-73
 Identities = 123/223 (55%), Positives = 166/223 (74%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GE+LM  D + IN   I   + EI+E+V  G+++ IV+GGGNI RG+S +  ++DR+TAD
Sbjct: 16  GESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATAD 75

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           YMGM+AT++N+LAL D     GI + V SA+S+++  E+Y    AI+YLEEGKVVIFA G
Sbjct: 76  YMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAG 135

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
            GNPFFTTDT AALR AE+  +++LKAT VDG+Y +DP K  SA  Y+ ITFDE + K L
Sbjct: 136 TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNL 195

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822
           ++MD+TAF+ CR++KL I VF I K G+LKRVI G++EGTLV+
Sbjct: 196 KVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281

 Score =  242 bits (619), Expect = 4e-73
 Identities = 92/222 (41%), Positives = 146/222 (65%), Gaps = 1/222 (0%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GE    G    ++  ++  +  +I+++V  G+++A+VIGGGN  RG   +   ++R+ +D
Sbjct: 59  GEMFG-GGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSD 117

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           YMGML T++NSLAL D L K GI++ V +AI++ +  E Y+PL A+++LE+G+VVIF  G
Sbjct: 118 YMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAG 177

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
           +G P+F+TDTTAA RA EI A+++L A  VDG++  DP     A +   ++  EV+ + L
Sbjct: 178 MGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGL 237

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
            + D+TAFS C D  +PI VF+++  G + R + G+  GTLV
Sbjct: 238 RVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLV 279

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256

 Score =  241 bits (615), Expect = 5e-73
 Identities = 96/258 (37%), Positives = 153/258 (59%), Gaps = 6/258 (2%)

Query: 568 AAMKPIALSSDQIPKKIIEKEYSLAVLKAQQL-GEALMKGDAYNINSSIIKNIISEISEI 626
           ++      SS  +P+          V+K   + G  L + D+  I+   I ++  +I +I
Sbjct: 3   SSHHHHHHSSGLVPRGSHMMRKQRIVIK---ISGACLKQNDSSIIDFIKINDLAEQIEKI 59

Query: 627 VSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 686
               I ++IV+GGGNI RG   K  ++DR+ AD MGM+ATIIN LAL + LN   + + V
Sbjct: 60  SKKYI-VSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIV 118

Query: 687 MSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 746
           +SAI  +K +      N  K +E+ +V+IF  G G P+FTTD+ AA+RAAE ++ IIL  
Sbjct: 119 LSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMG 178

Query: 747 TK-VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKS 805
              VDG+Y+SDP    +A  Y+ ITF+  +++ L++MD+TA + C++  + + VF+I K 
Sbjct: 179 KNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKP 238

Query: 806 GALKRVIEGKNEGTLVYE 823
            A+  V+E KN+ T+V +
Sbjct: 239 NAIVDVLEKKNKYTIVSK 256

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240

 Score =  239 bits (612), Expect = 1e-72
 Identities = 104/224 (46%), Positives = 150/224 (66%), Gaps = 2/224 (0%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS-NKIQNIDRSTA 658
           GEAL   + + I+  ++ +I  EI  +V   IE+ IVIGGGNI RG+S  +   I R++ 
Sbjct: 16  GEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSG 75

Query: 659 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 718
           DYMGMLAT+IN++A+ + L   G+ + V SAI I++  ESYI   AI++LE+G+VVIF  
Sbjct: 76  DYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGA 135

Query: 719 GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 778
           G GNPFFTTDT A LRA EI +++I+KATKVDGIY+ DPNK   A     +++++ +   
Sbjct: 136 GTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGD 195

Query: 779 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEG-KNEGTLV 821
           +E+MD TA S  +D KLPI V ++ K G L +VI+  +   ++V
Sbjct: 196 IEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252

 Score =  237 bits (607), Expect = 6e-72
 Identities = 94/223 (42%), Positives = 148/223 (66%), Gaps = 1/223 (0%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL       I+   ++ I  EI+E+   G+++A+VIGGGN+ RG       +DR  AD
Sbjct: 16  GEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQAD 75

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           Y GML T++N+L + D L   G+ + V +AI ++   E YI   A+++LE+ ++V+F  G
Sbjct: 76  YTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAG 135

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKAT-KVDGIYNSDPNKCLSAIIYKKITFDEVISKK 778
           IG+P+F+TDTTAALRAAEI+A+ IL A   VDG+YN+DP K  +A+ + ++T  EVI + 
Sbjct: 136 IGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRG 195

Query: 779 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           L+IMD+TA +   D  + + VF++ ++G ++RV+ G++ GT V
Sbjct: 196 LKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTV 238

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270

 Score =  237 bits (606), Expect = 1e-71
 Identities = 41/229 (17%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRST 657
           G++++      +       ++ EI        +L I  G G   R + +      +    
Sbjct: 45  GQSVIDRGRAAVYP-----LVDEIVAARK-NHKLLIGTGAGTRARHLYSIAAGLGLPAGV 98

Query: 658 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 717
              +G      N+  L  +L K GI     + +S      + +       +   K+ +  
Sbjct: 99  LAQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRP 158

Query: 718 GGIGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS 776
              G  P + TD    L A +   + ++     DG+Y ++P     A    +I+ DE+ +
Sbjct: 159 AAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKA 218

Query: 777 KKLE--IMDSTAFSFCRDQK--LPIRVFSIIKSGALKRVIEGKNEGTLV 821
           K L   I++       +  +    ++V + +  G L R + G++ GT++
Sbjct: 219 KGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 267

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255

 Score =  232 bits (593), Expect = 7e-70
 Identities = 91/224 (40%), Positives = 134/224 (59%), Gaps = 2/224 (0%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           G AL      + NS  +++I +EI  IV  GIE++IVIGGGNI RG   +   IDR  AD
Sbjct: 21  GGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEAD 80

Query: 660 YMGMLATIINSLALFDILNK-SGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 718
            +G L TIINSL L  +L   +     VM++I      E YI L A+ +L+ G +VIF G
Sbjct: 81  NIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGG 140

Query: 719 GIGNPFFTTDTTAALRAAEIKAEIILKATK-VDGIYNSDPNKCLSAIIYKKITFDEVISK 777
           G G PF TTD  +  RA E+ ++ IL A + VDG++ SDP    SA +Y+K+ +++V+ +
Sbjct: 141 GNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ 200

Query: 778 KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
            +++MD  A    RD  LP  VF+  + G ++R+  G++ GTL+
Sbjct: 201 NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLI 244

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G Length = 185

 Score =  227 bits (580), Expect = 6e-69
 Identities = 72/184 (39%), Positives = 126/184 (68%)

Query: 827  MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 886
            M + ++   T+  M  ++++L+ NL  +RTGRAN  +L +++V+Y+     L +IA +T 
Sbjct: 1    MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60

Query: 887  FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 946
             +  T+ +Q +++     I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++ 
Sbjct: 61   PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120

Query: 947  ITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 1006
              EE +++IR IRR++ + LKKL K   LS D   RA+ +IQK+TD+FI + +QL   KE
Sbjct: 121  YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180

Query: 1007 KEIL 1010
            +EIL
Sbjct: 181  QEIL 184

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y Length = 185

 Score =  225 bits (577), Expect = 2e-68
 Identities = 79/183 (43%), Positives = 132/183 (72%)

Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            I++IKK+ +++M  +++ LK NL KVRTGRA+  +L  I V+Y+   T L ++AN+   +
Sbjct: 2    INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAED 61

Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
            + T++I  F+KE++  ++KAI  ++LGLNP   G II V +PPLT+ERR+++VK+++   
Sbjct: 62   ARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEA 121

Query: 949  EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            E  ++++R IRRD+N +LK LLK+K +S D + +AQ +IQKLTD  + +I+++L  KEKE
Sbjct: 122  EGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 181

Query: 1009 ILT 1011
            ++ 
Sbjct: 182  LME 184

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis} Length = 209

 Score =  226 bits (579), Expect = 2e-68
 Identities = 73/190 (38%), Positives = 120/190 (63%), Gaps = 1/190 (0%)

Query: 822  YEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKI 881
            ++   M    + K + +KM   +      L  VR GRA+  +LD +QV Y+   T ++++
Sbjct: 20   FQSNAMG-QQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQL 78

Query: 882  ANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIV 941
            ANIT+  +  + IQP++K     I+KAI +A+LGLNP+  G +I ++ P LT+ERR ++V
Sbjct: 79   ANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLV 138

Query: 942  KLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQL 1001
            K++K   EE K+++R +RRD N++LKKL K   ++ D+      DIQK TDK+I +++++
Sbjct: 139  KVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEI 198

Query: 1002 LINKEKEILT 1011
              NKEKEI+ 
Sbjct: 199  AKNKEKEIME 208

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A Length = 185

 Score =  225 bits (575), Expect = 3e-68
 Identities = 64/183 (34%), Positives = 111/183 (60%)

Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            I +   + ++KM   + + +++L  +RTGRAN GM   I + Y+   T + ++A+I +  
Sbjct: 2    IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPE 61

Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
            +  + I+P+E      I+ AI  ++LG+NPT  G +I V++P LT+ERR E+VK  K+  
Sbjct: 62   ARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKG 121

Query: 949  EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            EE K+S+R IRR + E L ++ K      D   RA+ D+ K T +++ +I++L+ +KE E
Sbjct: 122  EEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGE 181

Query: 1009 ILT 1011
            +L 
Sbjct: 182  LLE 184

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8 Length = 185

 Score =  224 bits (574), Expect = 5e-68
 Identities = 73/182 (40%), Positives = 126/182 (69%)

Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ +
Sbjct: 2    ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61

Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
            S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++   
Sbjct: 62   SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEA 121

Query: 949  EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            E+ ++++R + RD+N+ +K LLK+K +S D++ R+Q D+QKLTD  I +I   L +KE E
Sbjct: 122  EQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181

Query: 1009 IL 1010
            ++
Sbjct: 182  LM 183

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C Length = 185

 Score =  224 bits (573), Expect = 5e-68
 Identities = 68/182 (37%), Positives = 121/182 (66%)

Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            ++   K  K+KM  T++ +++ L+K+RTG+ +  +L+ I+V Y+   T + ++A I++  
Sbjct: 2    VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISE 61

Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
              T+ I+P++K + S+I+KAIN ++LGLNP   GN+I +  P  T E+RE+ VK  K I 
Sbjct: 62   ERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIV 121

Query: 949  EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            EE KI+IR IRR+  + +K+  K  ++  D+  R + +IQKLTD+FI +++++   K++E
Sbjct: 122  EEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEE 181

Query: 1009 IL 1010
            I+
Sbjct: 182  IM 183

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244

 Score =  225 bits (576), Expect = 1e-67
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 29/233 (12%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 657
           G  L+  +  N +   IK I  +++++     E+A+V+GGG + R      +  N   + 
Sbjct: 28  GSVLV-PE--NPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETF 83

Query: 658 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 717
            D++G+  T  N++ L   L +      V                 A K ++  K+ +  
Sbjct: 84  KDFIGIQITRANAMLLIAALREKAYPVVVED------------FWEAWKAVQLKKIPVMG 131

Query: 718 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-- 775
           G   +P  TTD  AAL A  +KA++++  T VDG+Y +DP K  +A   KK+  +E++  
Sbjct: 132 GT--HPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEI 189

Query: 776 -------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
                  +    ++D  A        +   V     +  L RVI+G + GT +
Sbjct: 190 VGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 242

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226

 Score =  224 bits (573), Expect = 2e-67
 Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 31/234 (13%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 657
           G+   + +        +  +   I E+   G  + IV GGG+  R      +   I  + 
Sbjct: 9   GKFFDEDNV-----DNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAY 63

Query: 658 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 717
            D +G+ A+ +N+  +   L     +                     I+    GKVV+  
Sbjct: 64  LDLLGIWASRLNAYLVMFSLQDLAYMHVP------------QSLEEFIQDWSHGKVVVTG 111

Query: 718 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE---- 773
           G    P  +T   AAL A    ++ ++ AT VDG+Y  DP       +   +T  +    
Sbjct: 112 GF--QPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKI 169

Query: 774 ------VISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
                 V +   E++D  A       K+ + V +  K   +  +++G+   +++
Sbjct: 170 LEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSII 223

>3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A Length = 215

 Score =  215 bits (550), Expect = 2e-64
 Identities = 66/186 (35%), Positives = 112/186 (60%), Gaps = 2/186 (1%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           +  EI  ++   +P  +  +NPYG +P LV+RDL L+ES ++ EY+DER+P+P L+   P
Sbjct: 32  VSAEIISVEAGRQPPKLIEVNPYGSLPTLVDRDLALWESTVVMEYLDERYPHPPLLPVYP 91

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYM 120
           + RA +RL++   +++    + ++ + R K       +AR+E+R+ L  ++PLF    + 
Sbjct: 92  VARANSRLLIHRIQRDWCGQVDLILDPRTKE--AARVQARKELRESLTGVSPLFADKPFF 149

Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAG 180
           L +E S++D  + P+LWRL   GI L + A PL+ Y ER F+R ++  SL+  E+ M+ G
Sbjct: 150 LSEEQSLVDCCLLPILWRLPVLGIELPRQAKPLLDYMERQFAREAFQASLSGVERDMREG 209

Query: 181 VHFGHQ 186
            H  H 
Sbjct: 210 HHHHHH 215

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219

 Score =  210 bits (537), Expect = 2e-62
 Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 34/233 (14%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 657
           G  L   ++       I+     I  +     ++ +V+GGG + R      +      + 
Sbjct: 9   GSVLS-NES-----EKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETF 61

Query: 658 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 717
            DY+G+ AT +N++ L   +  +                     + A +  +  +VV+  
Sbjct: 62  CDYIGIAATRLNAMLLISAIPSAAK-------------KVPVDFMEAEELSKLYRVVVMG 108

Query: 718 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK 777
           G    P  TTD TAAL A  IKA++ + AT VDG+Y++DP    SA+ Y +++  +++  
Sbjct: 109 GT--FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166

Query: 778 ---------KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
                       ++D  A       K+   V        + + ++G+  GT++
Sbjct: 167 VSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1 Length = 184

 Score =  207 bits (529), Expect = 5e-62
 Identities = 69/183 (37%), Positives = 118/183 (64%), Gaps = 4/183 (2%)

Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            + DI K  ++ M   ++  K  +  +RT RA+  +++ I+V+Y+     + ++  I++  
Sbjct: 5    LEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPE 64

Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
             + I IQ +++     I+KAI    L LNPT+QGN+I V++PPLT+ERR E+V+L+  IT
Sbjct: 65   HNQIVIQVWDQNAVPAIEKAIR-EELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKIT 123

Query: 949  EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            EE ++ +R +RR++ E +++L     +S D + RA   +QKLTDK+I EIN+L+  KEKE
Sbjct: 124  EEARVRVRNVRREAKEMIEELEG---ISEDEKKRALERLQKLTDKYIDEINKLMEAKEKE 180

Query: 1009 ILT 1011
            I++
Sbjct: 181  IMS 183

>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Length = 291

 Score =  208 bits (532), Expect = 7e-61
 Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 38/237 (16%)

Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILN----ISNRNAKDG 445
             + + +LR KT    + CKKAL    G L +AE  L  +  K+  +    +  R  K+G
Sbjct: 4   SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEG 63

Query: 446 VIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLK----- 500
           +I +        LVE+NCETDFV++N +F +  +++A     +     DQL+        
Sbjct: 64  LIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLN 123

Query: 501 ---------IKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN--NLISYLHDN----- 544
                          ++ ++    I ++GEN+ ++R    K      + SY+H       
Sbjct: 124 SSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPS 183

Query: 545 -------KIGVIVEYNGDNESAV-----KDVAMHIAAMKPIALSS-DQIPKKIIEKE 588
                  K G +V        A      + +  H+  M P+++ S D  P    E +
Sbjct: 184 LHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETK 240

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae} Length = 216

 Score =  205 bits (523), Expect = 1e-60
 Identities = 65/176 (36%), Positives = 111/176 (63%), Gaps = 5/176 (2%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           + +E  ++DL   P+++  +NPYG VP LV+RDL+L+ S II EY+DERFP+P LM   P
Sbjct: 30  VLYENAEVDLQALPEDLMELNPYGTVPTLVDRDLVLFNSRIIMEYLDERFPHPPLMQVYP 89

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYM 120
           + RA+ RL++L  E++ +  L   EN       K    A +++++ L+ +AP+F +  Y 
Sbjct: 90  VSRAKDRLLMLRIEQDWYPTLAKAENGTE----KEKTSALKQLKEELLGIAPIFQQMPYF 145

Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRPSYMESLTPAEK 175
           + +EF ++D  +APLLW+L + G+  + + S  +  Y ER+F+R S+++S+  A  
Sbjct: 146 MNEEFGLVDCYVAPLLWKLKHLGVEFTGTGSKAIKAYMERVFTRDSFLQSVGEAAP 201

>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis} Length = 213

 Score =  204 bits (520), Expect = 3e-60
 Identities = 70/178 (39%), Positives = 111/178 (62%), Gaps = 5/178 (2%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           +  EI  ++  N P ++  +NPY  VP LV+R+L LYES II EY+DERFP+P LM   P
Sbjct: 34  VSVEIEQVEADNLPQDLIDLNPYRTVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYP 93

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYM 120
           + R  +RLM+   E + +  LY +E    + +    + AR+++R+ L+++AP+F +  + 
Sbjct: 94  VARGSSRLMMHRIEHDWYSLLYKIEQGNAQEA----EAARKQLREELLSIAPVFNETPFF 149

Query: 121 LGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRPSYMESLTPAEKIM 177
           + +EFS++D  +APLLWRL   GI  + + S  L  Y  R+F R +++ SLT AE+ M
Sbjct: 150 MSEEFSLVDCYLAPLLWRLPVLGIEFTGAGSKELKGYMTRVFERDAFLASLTEAEREM 207

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis} Length = 231

 Score =  197 bits (503), Expect = 9e-58
 Identities = 63/180 (35%), Positives = 109/180 (60%), Gaps = 10/180 (5%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQV-PILVERDLILYESNIINEYIDERFPYPQLMSSD 59
           +  EI  +   + P+++ ++NPY +  P LV+R+L+LY + II EY+DERFP+P LM   
Sbjct: 36  VGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVY 95

Query: 60  PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKY 119
           P+ R  +RLM+   E++ +     ++    +        AR+E+++ +++LAP+F    Y
Sbjct: 96  PVARGTSRLMMYRIERDWYSLAEKIQKNDAQ--------ARQELKEGILSLAPIFADTPY 147

Query: 120 MLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRPSYMESLTPAEKIMQ 178
            + +EFS++D  +APLLWRL  YGI+L    +  + +Y  R+F R ++ +SLT  EK + 
Sbjct: 148 FMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELA 207

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A* Length = 239

 Score =  194 bits (495), Expect = 2e-56
 Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 7/182 (3%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPIL-VERDLILYESNIINEYIDERFPYPQLMSSD 59
           +  E+ +I+L NKP+  +  +P+G +P+L   +  ++YES I  EY+D+ +P  +L   D
Sbjct: 47  IRHEVVNINLRNKPEWYYTKHPFGHIPVLETSQSQLIYESVIACEYLDDAYPGRKLFPYD 106

Query: 60  PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN-- 117
           P  RAR +++L  F K   +    L   R+    +     +  +R     L  +      
Sbjct: 107 PYERARQKMLLELFSKVPHLTKECLVALRSG---RESTNLKAALRQEFSNLEEILEYQNT 163

Query: 118 KYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRPSYMESLTPAEKI 176
            +  G   SM+D ++ P   RLD YGI    S +P L  +   +   P+    L      
Sbjct: 164 TFFGGTSISMIDYLLWPWFERLDVYGILDCVSHTPALRLWISAMKWDPTVSALLMDKSIF 223

Query: 177 MQ 178
             
Sbjct: 224 QG 225

>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Length = 208

 Score =  192 bits (490), Expect = 3e-56
 Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 51/227 (22%)

Query: 167 MESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIY 225
            E L P +  + AGVH G Q +  +  M  +IF  R + ++++++ K       A +++ 
Sbjct: 7   YEYLVPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLS 64

Query: 226 QLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMD 285
           +  +    +L V  ++ A   +   +   G  +I  R++ G LTN               
Sbjct: 65  R--YEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNP-------------- 108

Query: 286 LFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIK 345
                                           + +    P+ +F+ D    K AVSEA  
Sbjct: 109 --------------------------------MLSEYREPEVVFVNDPAIDKQAVSEATA 136

Query: 346 LNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           + IP++ + D+N+S   ++ VIP N+   +++A+    +       +
Sbjct: 137 VGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIR 183

>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241

 Score =  182 bits (463), Expect = 3e-52
 Identities = 48/240 (20%), Positives = 80/240 (33%), Gaps = 51/240 (21%)

Query: 169 SLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQL 227
                ++++ +  H    T   N +M  YI     N IH IN+E+T    + A R I  +
Sbjct: 6   KQDDIKRLLASNCH--QATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAV 63

Query: 228 GFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLF 287
              +  ++        R  I              RW  G LTN++T+K            
Sbjct: 64  QHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLK------------ 111

Query: 288 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLN 347
                                                P  + + D      A+ EA  +N
Sbjct: 112 ----------------------------------YEEPRVLIVTDPRSDFQAIKEASYVN 137

Query: 348 IPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIME 407
           IP+I + D++     ++ VIP N+ S +SI++    I       +  GEL       +M 
Sbjct: 138 IPVIALCDSDSPLAYVDVVIPCNNRSTESISMIYWMIAREVKILR--GELSKDEEWEVMV 195

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A* Length = 241

 Score =  181 bits (461), Expect = 6e-52
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 8/182 (4%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQLMSSD 59
           +  E+ +I+L NKP+  F+ NP+G VP+L      ++YES I  EY+DE +P  +L+  D
Sbjct: 47  IRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDD 106

Query: 60  PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK- 118
           P  +A  +++L  F K   +    + ++  +         +EE R     L  +    K 
Sbjct: 107 PYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAG----LKEEFRKEFTKLEEVLTNKKT 162

Query: 119 -YMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRPSYMESLTPAEKI 176
            +  G+  SM+D +I P   RL+   +N     +P L  +   +   P+    LT  +  
Sbjct: 163 TFFGGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDW 222

Query: 177 MQ 178
             
Sbjct: 223 QG 224

>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha} Length = 214

 Score =  178 bits (453), Expect = 4e-51
 Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 10/186 (5%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           + FE     +    +      P G+VP ++     L ES +INEY++  +P   L+  DP
Sbjct: 26  VPFEEVLAWI---GETDTTATPAGKVPYMITESGSLCESEVINEYLEAAYPQTPLLPRDP 82

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENER---NKTSIKGYKRAREEIRDRLITLAPLFLKN 117
           +   + R ++   E  + +    L  E     K S    +R  + +   +   A L   +
Sbjct: 83  MQAGKVREIVTFLELYLELTARELYPEAFFGGKVSDNVKERQLKLLSRYVPAFAKLAKFS 142

Query: 118 KYMLGDEFSMLDVVIAPLLWRLDYYGI----NLSKSASPLIKYAERIFSRPSYMESLTPA 173
            Y+ GD F++ D   A  L  +             +  P+ +Y + +  RPS  +     
Sbjct: 143 PYVAGDTFTLADCAAAVHLPLVSSCTKIIYGKDLLADLPVKEYLKTLSERPSVQKVNADR 202

Query: 174 EKIMQA 179
           +   + 
Sbjct: 203 KANTEL 208

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori} Length = 246

 Score =  176 bits (447), Expect = 5e-50
 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 21/191 (10%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILV----ERDLILYESNIINEYIDERFPYPQLM 56
           + +E+  +D    P+     NP  ++P+L     + D  L+ES +I +Y+DE++    L 
Sbjct: 50  IKYEVYRLDPLRLPEWFRAKNPRLKIPVLEIPTDQGDRFLFESVVICDYLDEKYTRHTLH 109

Query: 57  SSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK 116
           S DP ++A+ RL++  F + I   L   +               E+I   L         
Sbjct: 110 SHDPYVKAQDRLLIERFNELIKGSLECFDTNFAF--------GSEQIIQTLEIFEKELTN 161

Query: 117 N--KYMLGDEFSMLDVVIAPLLWRLDY------YGINLSKSASP-LIKYAERIFSRPSYM 167
               Y  G+   MLD ++ P + RL              KS  P    + +++       
Sbjct: 162 RGTNYFGGNRPGMLDYMVWPWVERLYLLRCVNDRKFVEKKSLFPNFADWGDQMQLDDIVK 221

Query: 168 ESLTPAEKIMQ 178
           +     ++   
Sbjct: 222 KHAHSPQEYFD 232

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252

 Score =  175 bits (446), Expect = 9e-50
 Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 50/220 (22%)

Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKG 232
           + ++ A  H G +          Y+F  R + +H+IN+ KT      A R I  +  +  
Sbjct: 15  QLLLAANTHLGARN--VQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIP-NPE 71

Query: 233 TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 292
            ++ + ++   +  +   A   G   I  R+  G  TN+ T                   
Sbjct: 72  DVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITR------------------ 113

Query: 293 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 352
                                           P  + + D      A+ EA  +NIP+I 
Sbjct: 114 ----------------------------SFKEPRLVIVTDPRSDAQAIKEASYVNIPVIA 145

Query: 353 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           + D +   + ++  IP N+    SI L    +    L  +
Sbjct: 146 LTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLR 185

>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A* Length = 226

 Score =  174 bits (443), Expect = 1e-49
 Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 7/192 (3%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQLMSSD 59
           +D++    D++N    I + NP G+VP LV  D   L++S +I EY D   P  +L+   
Sbjct: 26  IDYQFVLEDVWNADTQIHQFNPLGKVPCLVMDDGGALFDSRVIAEYADTLSPVARLIPPS 85

Query: 60  PLMRARARLMLLNFEKEIFIHLYMLEN----ERNKTSIKGYKRAREEIRDRLITLAPLFL 115
              R   R      +  +   + +          + S     R   +I + L  ++    
Sbjct: 86  GRERVEVRCWEALADGLLDAAVALRVEQTQRTPEQRSESWITRQHHKIDEALKAMSRGLA 145

Query: 116 KNKYMLGDEFSMLDVVIAPLLWRLDY--YGINLSKSASPLIKYAERIFSRPSYMESLTPA 173
              +  G+  ++ D+ +   L  LD+    ++  +  + L  +  RI  RPS++E+   A
Sbjct: 146 DRTWCNGNHLTLADIAVGCALAYLDFRQPQVDWREQHANLAAFYTRIEKRPSFLETQPQA 205

Query: 174 EKIMQAGVHFGH 185
           E +     H  H
Sbjct: 206 ENLYFQSHHHHH 217

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276

 Score =  175 bits (444), Expect = 3e-49
 Identities = 44/253 (17%), Positives = 86/253 (33%), Gaps = 42/253 (16%)

Query: 589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN 648
             L V+K   +G     G   +  +  I  ++ E+ +++     L I+ G G   R + +
Sbjct: 39  PWLQVVK---IG-----GRVMDRGADAILPLVEELRKLLP-EHRLLILTGAGVRARHVFS 89

Query: 649 --KIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIK 706
                 +   +   +       N   L  +L   G+                 +      
Sbjct: 90  VGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGV----------SYVEHPTVADQLAI 139

Query: 707 YLEEGKVVIFAG----------GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSD 756
           +L   + V+ +           G   P    DT A L A    A  +     VDGIY +D
Sbjct: 140 HLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTAD 199

Query: 757 PNKCL--SAIIYKKITFDEVISKK------LEIMDSTAFSFCRDQKLPIRVFSIIKSGAL 808
           PN      A    + +  ++   +        ++D  A +   +    ++V + +  G L
Sbjct: 200 PNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIE---RVQVVNGLVPGRL 256

Query: 809 KRVIEGKNEGTLV 821
              + G++ GTL+
Sbjct: 257 TAALRGEHVGTLI 269

>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295

 Score =  172 bits (438), Expect = 3e-48
 Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 52/235 (22%)

Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKG 232
            K + AG H G      + +M  YI+  + + I+IINL++T      A R I  +  +  
Sbjct: 16  LKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIE-NPA 72

Query: 233 TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 292
            +  + ++   +  +   A   G   I  R+  G  TN                      
Sbjct: 73  DVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTN---------------------- 110

Query: 293 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 352
                                    I+     P  + + D       ++EA  +N+P I 
Sbjct: 111 ------------------------QIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIA 146

Query: 353 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIME 407
           + +T+     ++  IP N+  A S+ L    +    L  +  G +  +    +M 
Sbjct: 147 LCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMR--GTISREHPWEVMP 199

>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A* Length = 219

 Score =  169 bits (430), Expect = 5e-48
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERFP-YPQLMSS 58
           + +E ++ DL NK   + +MNP + ++P+L+     + ES I  +YI+E +     L+ S
Sbjct: 28  IKYEYKEEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIEEVWNDRNPLLPS 87

Query: 59  DPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK 118
           DP  RA+ R      +K+I+     +   + +        A++E  + L  L        
Sbjct: 88  DPYQRAQTRFWADYVDKKIYDLGRKIWTSKGEEKEA----AKKEFIEALKLLEEQLGDKT 143

Query: 119 YMLGDEFSMLDVVIAPLLWRLDYY----GINLSKSASPLIKYAERIFSRPSYMESLTPAE 174
           Y  GD    +D+ + P       Y     +N+       I +A+R   + S  +SL   +
Sbjct: 144 YFGGDNLGFVDIALVPFYTWFKAYETFGTLNIESECPKFIAWAKRCLQKESVAKSLPDQQ 203

Query: 175 KIMQ 178
           K+ +
Sbjct: 204 KVYE 207

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A* Length = 229

 Score =  168 bits (427), Expect = 2e-47
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 9/187 (4%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           + FE         P     ++P G+VP+L      L E+++I +YI++      L+ +DP
Sbjct: 26  LTFEEVTFYGGQAPQ-ALEVSPRGKVPVLETEHGFLSETSVILDYIEQTQGGKALLPADP 84

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENER---NKTSIKGYKRAREEIRDRLITLAPLFLKN 117
             +A+ R +L   E  I +       E            ++AR ++     TL       
Sbjct: 85  FGQAKVRELLKEIELYIELPARTCYAESFFGMSVEPLIKEKARADLLAGFATLKRNGRFA 144

Query: 118 KYMLGDEFSMLDVVIAPLLWRLDYYGINLSK----SASPLIK-YAERIFSRPSYMESLTP 172
            Y+ G++ ++ D++    +   +  G  +      +  P  K   + +   P     L  
Sbjct: 145 PYVAGEQLTLADLMFCFSVDLANAVGKKVLNIDFLADFPQAKALLQLMGENPHMPRILAD 204

Query: 173 AEKIMQA 179
            E  M A
Sbjct: 205 KEASMPA 211

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A Length = 267

 Score =  169 bits (428), Expect = 4e-47
 Identities = 32/195 (16%), Positives = 76/195 (38%), Gaps = 17/195 (8%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           + F +  +DL  KP ++  + P    P +     +  + N I E+++E    P+ +   P
Sbjct: 50  VVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSP 109

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL----- 115
                    +  F K    ++     E N+   +G  +  +++ + L +  P  +     
Sbjct: 110 KHPESNTAGMDIFAK-FSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSM 168

Query: 116 ------KNKYMLGDEFSMLDVVIAPLLWRL-----DYYGINLSKSASPLIKYAERIFSRP 164
                   K++ G+E ++ D  + P L  +      Y   ++ K  + + +Y    +SR 
Sbjct: 169 EDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRD 228

Query: 165 SYMESLTPAEKIMQA 179
            +  +    +++  A
Sbjct: 229 EFTNTCPSDKEVEIA 243

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli} Length = 215

 Score =  166 bits (422), Expect = 5e-47
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 12/184 (6%)

Query: 1   MDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP---Q 54
           + F I+ IDL    +            +VP+L   D  L ES+ I EY+++RF  P   +
Sbjct: 32  LSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWER 91

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIH---LYMLENERNKTSIKGYKRAREEIRDRLITLA 111
           +   D   RARAR +      ++                         +           
Sbjct: 92  IYPLDLENRARARQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAE 151

Query: 112 PLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
            L +  +  L  E+ + D  +A ++ RL  +G  + +       YA   + R S    + 
Sbjct: 152 HLLVLGQPNLFGEWCIADTDLALMINRLVLHGDEVPERLVD---YATFQWQRASVQRFIA 208

Query: 172 PAEK 175
            + K
Sbjct: 209 LSAK 212

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum} Length = 471

 Score =  174 bits (442), Expect = 7e-47
 Identities = 45/241 (18%), Positives = 76/241 (31%), Gaps = 30/241 (12%)

Query: 1   MDFEIRDIDLFNK-PDNIFRMNPYGQVPILVERDL---ILYESNIINEYIDER-FPYPQL 55
           + ++   + L  + P    ++NP   VP L   +     ++ES +I +Y+D    P   L
Sbjct: 50  VSYDRVAVGLREEMPQWYKQINPRETVPTLEVGNADKRFMFESMLIAQYLDNSGAPAGAL 109

Query: 56  MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL 115
           M S    R +    L      I     +L +  +    K        +      LA    
Sbjct: 110 MGSSAAQRHQIEFFLAQVGDFIGAAHGLLRDPLSGEKRKAMDDNAAYVDG---LLAANQT 166

Query: 116 KNKYMLGDEFSMLDVVIAPLLWRL-----DYYGINLSKSASPLIKYAERIFSRPSYMESL 170
              Y    EF+M DV + P L RL      Y G ++   A  +         R S  E+ 
Sbjct: 167 TGPYYCDGEFTMADVALVPFLVRLKPALMYYAGYDVFCKAPRMKALWAAAAQRASVRETS 226

Query: 171 TPAEKIM---QAGVHFGHQTRFWNPKMSSYI-----FGHRNKIHIINLEKTLYMYEKAIR 222
             A + +   +  V         N     Y      F  R ++             +  +
Sbjct: 227 PTAAQCIENYRHLVPESAPMMGANGGHVLYSNLFCPFVDRARL---------ASELRKFQ 277

Query: 223 Y 223
            
Sbjct: 278 M 278

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum} Length = 471

 Score =  163 bits (415), Expect = 3e-43
 Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 12/187 (6%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVP-ILVERDLILYESNIINEYIDERFPY--PQLMS 57
               I ++ L  +P+    +NP   VP +       ++ES +I +YID         +  
Sbjct: 276 FQMHIVEVPLHPQPEWYKYINPRDTVPALFTPSGEAVHESQLIVQYIDCVATKGSALVPR 335

Query: 58  SDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN 117
            D           +         L        + +    + A  E+  +L      F + 
Sbjct: 336 GDAEKEYEVGF-FVENAGYFVGGLMSWIIRGGEDAKAELQWAAGELEQQL--AKHPFGEG 392

Query: 118 KYMLGDEFSMLDVVIAPLLWRLDYY------GINLSKSASPLIKYAERIFSRPSYMESLT 171
            +  G   +  DV I P L R   +      G +L      L   AE   + P       
Sbjct: 393 PFFGGKRMNAGDVAILPFLVRAKAFMPEFSGGYDLFAHFPLLNGLAEAGMATPEAKSVFR 452

Query: 172 PAEKIMQ 178
             E+  +
Sbjct: 453 TLEEYKE 459

>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A* Length = 223

 Score =  166 bits (422), Expect = 8e-47
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 13/183 (7%)

Query: 1   MDFEIRDIDLFNK-----PDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQL 55
           +D+EI  I+L         +    +NP  QVP L    + + +S  I EY++E  P P+L
Sbjct: 36  IDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALKIDGITIVQSLAIMEYLEETRPIPRL 95

Query: 56  MSSDPLMRARARLMLLNFEKEI--FIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL 113
           +  DP  RA  R++       I    +L +L+    +      + A++ I      L  +
Sbjct: 96  LPQDPQKRAIVRMISDLIASGIQPLQNLSVLKQVGQE---NQMQWAQKVITSGFNALEKI 152

Query: 114 F--LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
                 KY +GDE SM DV + P +   + + ++LS   + +    + + +   +  S  
Sbjct: 153 LQSTAGKYCVGDEVSMADVCLVPQVANAERFKVDLSPYPT-ISHINKELLALEVFQVSHP 211

Query: 172 PAE 174
             +
Sbjct: 212 RRQ 214

>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A* Length = 242

 Score =  164 bits (417), Expect = 5e-46
 Identities = 34/185 (18%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP-YPQLMSSD 59
           +++E   I   ++ ++  +++P G++P+L      ++ES  I E++D  FP  P+L+  D
Sbjct: 27  LEYEQIRIAP-SQEEDFLKISPMGKIPVLEMDGKFIFESGAILEFLDTIFPQTPKLIPED 85

Query: 60  PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKY 119
           P   AR R +    E  + I    +     K S +  +     +   +  L  +   + Y
Sbjct: 86  PWEAARVREISTIIETYLDIPARRIYLPAAKVSPEIVEEVHSTLVKGIKALQRVVRFSPY 145

Query: 120 MLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP------LIKYAERIFSRPSYMESLTPA 173
           + G+ F++ D      L  LD        +  P        +Y   + ++          
Sbjct: 146 IAGNVFTLADCSGFAHLSVLDEELRPFYPNNHPLDLLNGWKEYFVFMKTKAGPALVEKDK 205

Query: 174 EKIMQ 178
           + + +
Sbjct: 206 QILKK 210

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A* Length = 247

 Score =  163 bits (415), Expect = 1e-45
 Identities = 31/195 (15%), Positives = 71/195 (36%), Gaps = 17/195 (8%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           + F +  +D+  KP+ +  + P    P LV    +  +   I E++++    P+     P
Sbjct: 45  VKFNVTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSP 104

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRL-----------IT 109
             +    +    F K    ++   + E NK   K   +  + + D L             
Sbjct: 105 KYKESFDVGCNLFAK-FSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSA 163

Query: 110 LAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRP 164
             P   +  ++ GD+ ++ D  + P L  +      Y   ++    S + +Y    ++R 
Sbjct: 164 EEPPVSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYARE 223

Query: 165 SYMESLTPAEKIMQA 179
            +  +    ++I   
Sbjct: 224 EFTHTCPEDKEIENT 238

>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli} Length = 202

 Score =  162 bits (411), Expect = 1e-45
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 7/179 (3%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQLMSSD 59
           + FE  +   +N  + + + NP G+VP+LV  +    ++S II EYI+     P ++  D
Sbjct: 24  ITFEFINELPYNADNGVAQFNPLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRD 83

Query: 60  PLMRARARLMLLNFEKEIFIHLYMLENER---NKTSIKGYKRAREEIRDRLITLAPLFLK 116
           PL   R R +    +  +   L  +  +     + S     R RE+I   L  L   +L 
Sbjct: 84  PLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEG-YLV 142

Query: 117 NKYMLGDEFSMLDVVIAPLLWRLDYYG--INLSKSASPLIKYAERIFSRPSYMESLTPA 173
           +  +  D  ++  + IA  +  L++             L+K  E +FSR S+  +  P 
Sbjct: 143 DGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPK 201

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  164 bits (417), Expect = 2e-45
 Identities = 44/262 (16%), Positives = 80/262 (30%), Gaps = 62/262 (23%)

Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKG 232
           + ++ A VH G +    + +M  Y++  R + I+IINL KT    + A R I  +  +  
Sbjct: 20  QMMLAADVHLGTKN--CDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIE-NPQ 76

Query: 233 TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 292
            ++    +   +  +   A   G   I  R   G  TN                      
Sbjct: 77  DIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTN---------------------- 114

Query: 293 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 352
                                    ++     P  + + D       + E+   NIP I 
Sbjct: 115 ------------------------QLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIA 150

Query: 353 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM------ 406
             DT+     ++  IP N+   +SI      +    L  +  G +       +M      
Sbjct: 151 FCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR--GTILPGHKWDVMVDLFFY 208

Query: 407 ----ECKKALIEANGKLSKAEE 424
               E K+   E    ++    
Sbjct: 209 RDPEEAKEQEEEEAALVAPDYG 230

>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A Length = 241

 Score =  161 bits (409), Expect = 5e-45
 Identities = 33/194 (17%), Positives = 75/194 (38%), Gaps = 15/194 (7%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP---YPQLMS 57
           + F +  +D   + + + ++ P G++P L+    +  ++N I E+++       YP+L +
Sbjct: 39  VTFNVTTVDTKRRTETVQKLCPGGELPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAA 98

Query: 58  SDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIR-------DRLITL 110
            +P        +   F   I      L +   K  +K  K     +        D     
Sbjct: 99  LNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEGVDETSAE 158

Query: 111 APLFLKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRPS 165
                + K++ G+E ++ D  + P L  +      Y G  + ++   + +Y    ++R  
Sbjct: 159 DEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREE 218

Query: 166 YMESLTPAEKIMQA 179
           +  +    E+I  A
Sbjct: 219 FASTCPDDEEIELA 232

>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253

 Score =  159 bits (404), Expect = 4e-44
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 50/220 (22%)

Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKG 232
            K + AG H G      + +M  YI+  + + I+IINL++T      A R I  +  +  
Sbjct: 49  LKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIE-NPA 105

Query: 233 TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 292
            +  + ++   +  +   A   G   I  R+  G  TN                      
Sbjct: 106 DVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ--------------------- 144

Query: 293 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 352
                                    I+     P  + + D       ++EA  +N+P I 
Sbjct: 145 -------------------------IQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIA 179

Query: 353 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
           + +T+     ++  IP N+  A S+ L    +    L  +
Sbjct: 180 LCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMR 219

>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5 Length = 230

 Score =  153 bits (389), Expect = 2e-42
 Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERFP--YPQLMS 57
           + +E  + DL+ K + + + NP + ++P+L+     + ES II +YIDE F    P L+ 
Sbjct: 30  LSYEDVEEDLYKKSELLLKSNPVHKKIPVLIHNGAPVCESMIILQYIDEVFASTGPSLLP 89

Query: 58  SDPLMRARARLMLLNFEKEIFIHLY-MLENERNKTSIKGYKRAREEIRDRLITLAPLFLK 116
           +DP  RA AR  +   + ++       L  +  +   +G K+A   +      L      
Sbjct: 90  ADPYERAIARFWVAYVDDKLVAPWRQWLRGKTEEEKSEGKKQAFAAVGVLEGALRECSKG 149

Query: 117 NKYMLGDEFSMLDVVIAPLLWRLDYYGIN-----LSKSASP-LIKYAERIFSRPSYMESL 170
             +  GD   ++DV +  +L  +              + +P L  + ER     +   +L
Sbjct: 150 GGFFGGDGVGLVDVALGGVLSWMKVTEALSGDKIFDAAKTPLLAAWVERFIELDAAKAAL 209

Query: 171 TPAEKIMQ 178
               ++++
Sbjct: 210 PDVGRLLE 217

>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A Length = 250

 Score =  152 bits (384), Expect = 2e-41
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 15/193 (7%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           + F +  +D    PD +    P  Q+PIL+       ++  I ++++E    P   S  P
Sbjct: 57  VPFTLTTVDTRRSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAP 116

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL----- 115
             R         F K     +      +++   +   RA   +   L       L     
Sbjct: 117 RYRESNTAGNDVFHK-FSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQ 175

Query: 116 ----KNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRPSY 166
               + +++ GD  ++ D  + P L  +D     +    +      + +Y +       +
Sbjct: 176 LRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEF 235

Query: 167 MESLTPAEKIMQA 179
             +   + +I+ A
Sbjct: 236 KYTCPHSAEILAA 248

>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8 Length = 123

 Score =  147 bits (373), Expect = 2e-41
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 890  HTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITE 949
            H  SI    K+    + KA+      L+       +    P  T+ER ++ +K+++   E
Sbjct: 5    HHGSISDIRKDAEVRMDKAVEAFKNKLDKF--KAAVRKVFP--TEERIKDWLKIVRGEAE 60

Query: 950  ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 1009
            + ++++R + RD+N+    L K+K ++  +  ++ +D+QKLTD  I +I   L + E  +
Sbjct: 61   QARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIEAALADMEAWL 120

Query: 1010 L 1010
             
Sbjct: 121  T 121

>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5 Length = 231

 Score =  151 bits (382), Expect = 2e-41
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 20/193 (10%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERFP-------- 51
           ++FE R+ DL NK D + R NP + ++P+L+     + ES +I +Y+D+ FP        
Sbjct: 30  LEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPP 89

Query: 52  YPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLA 111
                +     RA AR      +++++     L   + +        A  E+ + L TL 
Sbjct: 90  ANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAA----AGREMAEILRTLE 145

Query: 112 PLFLKNKYML---GDEFSMLDVVIAPLLWRLDYY----GINLSKSASPLIKYAERIFSRP 164
                 ++     G     +DV + P       Y    G ++ + A  L  +A R     
Sbjct: 146 AELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRID 205

Query: 165 SYMESLTPAEKIM 177
           S ++ L   EK+ 
Sbjct: 206 SVVKHLPSPEKVY 218

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A* Length = 214

 Score =  147 bits (374), Expect = 1e-40
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 15/183 (8%)

Query: 1   MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS 57
           + +E   + L       D    +NP   VP L     +L +S  I E+++E++P P L+ 
Sbjct: 26  VPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWLEEQYPTPALLP 85

Query: 58  SDPLMRARARLMLLNFEKEIF-----IHLYMLENERNKTSIKGYKRAREEIRDRLITLAP 112
           +D   R R R +      +I        L  L                  I         
Sbjct: 86  ADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTFGADEAAINAWCGTWISAGFDAYEA 145

Query: 113 LF----LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLI-KYAERIFSRPSYM 167
           L      + +Y  GD  ++ D  + P +     + ++L+    PLI           ++ 
Sbjct: 146 LLAVDPKRGRYSFGDTPTLADCYLVPQVESARRFQVDLTP--YPLIRAVDAACGELDAFR 203

Query: 168 ESL 170
            + 
Sbjct: 204 RAA 206

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A* Length = 243

 Score =  143 bits (363), Expect = 1e-38
 Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 7/179 (3%)

Query: 1   MDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMS 57
           +D++ + I      +K + I  +NP GQVP   + D+++ ES  I  Y++E++P   L  
Sbjct: 50  IDYDEKIISFSKKEHKSEEILELNPRGQVPTFTDGDVVVNESTAICMYLEEKYPKVPLFP 109

Query: 58  SDPLMRARARLMLL---NFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           SD  +RA+    +    N    +   +      ++       K  +++    L       
Sbjct: 110 SDTTIRAKVYQRMFETSNISTNVMEFVQYKMKNKDSIDQVLLKEKKDKAHVELGHWENYL 169

Query: 115 LKN-KYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTP 172
            +   ++   EF+M DV   P++  +   G NL  S   + KY   +  RP+ ++++ P
Sbjct: 170 KQTGGFVATKEFTMADVFFFPMVALIVRQGANLKDSYPNIFKYYNMMMDRPTIVKTMPP 228

>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene} Length = 121

 Score =  135 bits (343), Expect = 1e-37
 Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 7/118 (5%)

Query: 894  IQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 953
            I   +K+    + K++      L+    G          T+ERR+++VK+++   E  ++
Sbjct: 2    INEIKKDAQERMDKSVEALKNNLSKVRTGG-------GGTEERRKDLVKIVRGEAEGGRV 54

Query: 954  SIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILT 1011
            ++R I RD+  +L  L K+K ++  +  +A ++IQKLTD  + +I+++L  KEKE++ 
Sbjct: 55   AVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKELME 112

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp} Length = 222

 Score =  131 bits (332), Expect = 8e-35
 Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 1   MDFEIRDIDLFNKPDNIF-----RMNPYGQVPILVERDLILYESNIINEYIDERFPYPQL 55
           + +E  ++ L N           ++NP   VP L     IL +S  I +Y++E  P   L
Sbjct: 26  IAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDYLEEIHPEMPL 85

Query: 56  MSSDPLMRARARLMLLNFEKEIF-----IHLYMLENERNKTSIKGYKRAREEIRDRLIT- 109
           +  DP M+A  + M L    ++        L  L+ + N    +  +     ++      
Sbjct: 86  LPKDPFMKATLKSMALIVACDMHPLNNLRVLNRLKEQFNANEEQVLEWYHHWLKTGFDAF 145

Query: 110 ---LAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLI-KYAERIFSRPS 165
              L  L        G E  + DV + P ++    +  +++    P+I +  E   + P+
Sbjct: 146 EEKLGALERDKPVCFGSEVGLADVCLIPQVYNAHRFHFDMAS--YPIINEINEYCLTLPA 203

Query: 166 YMESL 170
           + ++ 
Sbjct: 204 FHDAA 208

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 Length = 221

 Score =  125 bits (316), Expect = 1e-32
 Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 22/189 (11%)

Query: 1   MDFEIRDIDLFNK----PDNIFR-MNPYGQVPILVERDLILYESNIINEYIDERFPYPQL 55
           +D+E   ++L        D  F+ +NP G VP LV+ D+++ +S  I  Y+DE++P P L
Sbjct: 32  LDYEYIPVNLLKGDQFDSD--FKKINPMGTVPALVDGDVVINDSFAIIMYLDEKYPEPPL 89

Query: 56  MSSDPLMRARARLMLLNFEKEIF------IHLYMLENERNKTSIKGYKRAREEIRDRLIT 109
           +  D   RA     +      I       +  Y+ E    +            I      
Sbjct: 90  LPRDLHKRAVNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKT---AWVNNAITKGFTA 146

Query: 110 LAPLF--LKNKYMLGDEFSMLDVVIAPLLWRL-DYYGINLSKSASPLIK-YAERIFSRPS 165
           L  L      K+  GDE  + D+ +AP +    + + IN+     P +    E     P+
Sbjct: 147 LEKLLVNCAGKHATGDEIYLADLFLAPQIHGAINRFQINMEP--YPTLAKCYESYNELPA 204

Query: 166 YMESLTPAE 174
           +  +L   +
Sbjct: 205 FQNALPEKQ 213

>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster} Length = 260

 Score =  125 bits (315), Expect = 3e-32
 Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 17/184 (9%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
           +  ++  +D+   P +          PIL++  L + E+  I  +I +  P    +    
Sbjct: 59  ISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMKNIPGGYNLFVQD 118

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYM 120
              A     L    K     L   +  +N   +   ++  + +  R           +++
Sbjct: 119 KEVATLIENLYVKLKL---MLVKKDEAKNNALLSHLRKINDHLSAR---------NTRFL 166

Query: 121 LGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRPSYMESLTPAEK 175
            GD     D  + P L  +      +    +    + L +Y   ++   ++ +S    + 
Sbjct: 167 TGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLTALWRYMYHMYQLDAFTQSCPADQD 226

Query: 176 IMQA 179
           I+  
Sbjct: 227 IINH 230

>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A* Length = 213

 Score =  120 bits (302), Expect = 7e-31
 Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 14/185 (7%)

Query: 2   DFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERF-PYPQLMSSD 59
            FE   + +F+  +    +NP  + P LV     +L +S++I +Y++    P   LM + 
Sbjct: 27  PFEHHSLSVFSTFEQFKAINPVVKAPTLVCEGGEVLMDSSLIIDYLETLAGPQRSLMPTA 86

Query: 60  PLMRARAR----LMLLNFEKE---IFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAP 112
              R R      L L   EK    ++        +++   +   +R   +++     L  
Sbjct: 87  LPQRLRELRLVGLALAACEKSVQIVYERNLRPAEKQHGPWL---ERVGGQLQAAYGELEQ 143

Query: 113 LFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLS-KSASP-LIKYAERIFSRPSYMESL 170
              K             + +A           +       P +  +AE     P ++ + 
Sbjct: 144 ELQKQPLPRDGSLGQAGISLAVAWSFSQMMVADQFNPGQFPAVRGFAEYAEQLPVFLATP 203

Query: 171 TPAEK 175
                
Sbjct: 204 ATEGH 208

>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196

 Score =  113 bits (284), Expect = 1e-28
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 391 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 450
            + + +LR  T A +M+ K+AL +A     KA ++LR +   K    ++R A++G+I  Y
Sbjct: 4   MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHY 63

Query: 451 ISE--KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP--INLDQLNNLKIKN--N 504
           I    +VG LVE+NCETDFVA+N  F   +K +A  I    P  ++ +++   +++    
Sbjct: 64  IHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQ 123

Query: 505 LLTVDEKCKELISRIGENIKIRRFKLFKTNNNLIS--YLHDNKIGV 548
           +       +    +I E I   R K +     L+   ++ D+K+ V
Sbjct: 124 IYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKV 169

>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 510 EKCKELISRIGENIKIRRFKLFKTNNNLISYLH-DNKIGVIVEYNGDNESA--------- 559
           EK  +L+   G     ++         +  Y+H + ++GV+VE N + +           
Sbjct: 33  EKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNL 92

Query: 560 VKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 600
            KD+AMHIA M P  +S+++IP + +EKE  + +  A   G
Sbjct: 93  AKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEG 133

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289

 Score =  115 bits (290), Expect = 3e-26
 Identities = 82/219 (37%), Positives = 120/219 (54%), Gaps = 17/219 (7%)

Query: 387 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 442
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R    IK  KK  N+    A
Sbjct: 2   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 57

Query: 443 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIK 502
            DGVI   I    G ++E+NC+TDFVAK+  F  F+ K+          +++ L      
Sbjct: 58  ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK----- 112

Query: 503 NNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKD 562
                 +E+   L+++IGENI IRR    +  + L SY H  +IGV+V   G +E  VK 
Sbjct: 113 ---AQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADEELVKH 168

Query: 563 VAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 601
           +AMH+AA KP  +  + +  +++EKEY + +  A Q G+
Sbjct: 169 IAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGK 207

>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A* Length = 233

 Score =  106 bits (267), Expect = 4e-26
 Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 13/179 (7%)

Query: 1   MDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQLM 56
              +   I+L+   +K       N  G VP+L   D  ++ E   I EYID     P L 
Sbjct: 44  SSVQFVRINLWKGEHKKPEFLAKNYSGTVPVLELDDGTLIAECTAITEYIDALDGTPTLT 103

Query: 57  SSDPLMRARARLMLLNFEKEIF---------IHLYMLENERNKTSIKGYKRAREEIRDRL 107
              PL +    +M    E E+              +        + +   R R++    +
Sbjct: 104 GKTPLEKGVIHMMNKRAELELLDPVSVYFHHATPGLGPEVELYQNKEWGLRQRDKALHGM 163

Query: 108 ITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY 166
                +  +  Y+ GD FSM D+ +   L       + + +    L  + +R+  RPS 
Sbjct: 164 HYFDTVLRERPYVAGDSFSMADITVIAGLIFAAIVKLQVPEECEALRAWYKRMQQRPSV 222

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266

 Score =  106 bits (267), Expect = 1e-25
 Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 30/250 (12%)

Query: 600 GEALM-KGDAYNINSSIIKNIISEISEIVSC------GIELAIVIGGGNICRGISNKIQN 652
           G  L  K   Y+I    ++ I  EI   +         I+L +V GGG     ++ K   
Sbjct: 15  GSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLK 74

Query: 653 IDRSTADYMGMLATI---------INSLALFDILNKSGIISHVMSAISIEKFLESYIPLN 703
           I+     ++ M              N++ +  + +       +  +  +    +     +
Sbjct: 75  IEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTS 134

Query: 704 AIKYLEEGKVV-------IFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSD 756
           AIK + +  +V       +     G    + D      A E+KA++IL AT VDG+   +
Sbjct: 135 AIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDN 194

Query: 757 PNKCLSAIIYKKITFDEVISKKLEIMDSTA-----FSFCRDQKLPIRVFSIIKSGALKRV 811
               +  I    I            +D T          R  K    VF+  K+  + + 
Sbjct: 195 KP--IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKA 252

Query: 812 IEGKNEGTLV 821
           + G+ EGT +
Sbjct: 253 LLGEVEGTEI 262

>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans} Length = 291

 Score =  106 bits (264), Expect = 3e-25
 Identities = 30/194 (15%), Positives = 76/194 (39%), Gaps = 17/194 (8%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVE--RDLILYESNIINEYID--ERFPYPQLM 56
              E++ +++ ++     +     Q PI++E  ++L   ++  I   I    +     L 
Sbjct: 56  ARVEVKTVNVNSEAF--KKNFLGAQPPIMIEEEKELTYTDNREIEGRIFHLAKEFNVPLF 113

Query: 57  SSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKG----YKRAREEIRDRLITLAP 112
             DP    R   +  NF+  +   +   + ++  + ++      K     + ++L  +  
Sbjct: 114 EKDPSAEKRIENLYRNFKLFLRAKVEFDKGKKEPSRVEDLPAQIKVHYNRVCEQLSNIDQ 173

Query: 113 LF--LKNKYMLGDEFSMLDVVIAPLLWRLD-----YYGINLSKSASPLIKYAERIFSRPS 165
           L    K++Y+LG+  +  D  + P L  +        G ++  + + L  Y    +   +
Sbjct: 174 LLSERKSRYLLGNSMTEYDCELMPRLHHIRIIGLSLLGFDIPHNFTHLWAYILTAYRTAA 233

Query: 166 YMESLTPAEKIMQA 179
           ++ES    + I+  
Sbjct: 234 FIESCPADQDIIHH 247

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1 Length = 84

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 857 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLG 915
           G +    LD+I V   +    L +I  I++ +   I +      E ++   KAI E+ + 
Sbjct: 1   GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 916 LNPTIQGNIIYVSIPPLTKERRE 938
           LNP ++G +I V IP +T     
Sbjct: 61  LNPEVEGTLIRVPIPKVTSGPSS 83

>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A* Length = 203

 Score = 96.5 bits (241), Expect = 8e-23
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 24/190 (12%)

Query: 2   DFEIRDIDLFNK-----PDNIFR-MNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQ 54
           +FE+  +DL +K      D  +  +NP G VP L  +    L E   I +Y+ ++ P  Q
Sbjct: 24  NFELVQVDLASKKTASGQD--YLEVNPAGYVPCLQLDDGRTLTEGPAIVQYVADQVPGKQ 81

Query: 55  LM-SSDPLMRARARLMLLNF-EKEI---FIHLYMLENERNKTSIKGYKRAREEIRDRLIT 109
           L  ++    R       LNF   E+   F  L+        +S +     R+ +  RL  
Sbjct: 82  LAPANGSFERYHL-QQWLNFISSELHKSFSPLFNPA-----SSDEWKNAVRQSLNTRLGQ 135

Query: 110 LAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFSRPSYME 168
           +A       Y+LGD+ S+ D+ +  +L    Y  I+L  S  P ++ +  R+  R +   
Sbjct: 136 VARQLEHAPYLLGDQLSVADIYLFVVLGWSAYVNIDL--SPWPSLQAFQGRVGGREAVQS 193

Query: 169 SLTPAEKIMQ 178
           +L  AE +++
Sbjct: 194 ALR-AEGLIK 202

>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa} Length = 207

 Score = 93.0 bits (232), Expect = 1e-21
 Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 18/188 (9%)

Query: 2   DFEIRDIDLF--NKPDNIFR-MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSS 58
            F+++ +D      P+  +  +NP G VP L   D +L ++  I  YI +  P  + +S 
Sbjct: 26  SFDLQFLDHQSMKAPE--YLALNPSGAVPALQVGDWVLTQNAAILNYITDIAPAERGLSG 83

Query: 59  DPLMRARARLM-LLNFE--------KEIFIHLYMLENERNKTSIKGYKRAREEIRDRLIT 109
           D  ++ARA +   + F           +F     L++ +     +    AR+++R     
Sbjct: 84  DGSLKARAEINRWIAFSNSDVHPMYWALFGGTAYLQDPQMIARSQ--DNARQKLRVLYQR 141

Query: 110 LAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMES 169
                  + ++   + S  D  +   L      G++LS   + L  + ER+ + P    +
Sbjct: 142 ADAHLKHHNWLANGQRSGADAYLYVTLRWAKKVGVDLSSLDA-LSAFFERMEADPGVQAA 200

Query: 170 LTPAEKIM 177
           L  AE ++
Sbjct: 201 LQ-AEGLI 207

>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A* Length = 201

 Score = 91.5 bits (228), Expect = 5e-21
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 17/179 (9%)

Query: 2   DFEIRDIDLFNK-----PDNIFR-MNPYGQVP-ILVERDLILYESNIINEYIDERFPYPQ 54
            +E+  +DL  K      D  +  +NP G VP + V+   ++ ++  I +YI +      
Sbjct: 24  PYELEAVDLKAKKTADGGD--YFAVNPRGAVPALEVKPGTVITQNAAILQYIGDHSDVAA 81

Query: 55  LM-SSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITL-AP 112
              +   + RAR     L F  ++      L         +        I  RL  L A 
Sbjct: 82  FKPAYGSIERARL-QEALGFCSDLHAAFSGLFAPNLSEEAR--AGVIANINRRLGQLEAM 138

Query: 113 LFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRPSYMESL 170
           L  KN Y LGD+F+  D   + ++       ++L  SA P  +K  ER+ +RP+  ++ 
Sbjct: 139 LSDKNAYWLGDDFTQPDAYASVIIGWGVGQKLDL--SAYPKALKLRERVLARPNVQKAF 195

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A* Length = 211

 Score = 90.8 bits (226), Expect = 8e-21
 Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 20/183 (10%)

Query: 2   DFEIRDIDLFN----KPDNIF-RMNPYGQVPILVERDLILYESNIINEYIDERFP--YPQ 54
           DFE+  ++L +    K    F   NP+GQVP   + DL L+ES  I +YI  R+      
Sbjct: 27  DFELVHVELKDGEHKKEP--FLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYENQGTN 84

Query: 55  LMSSDPLMRARARLML--LNFE--------KEIFIHLYMLENERNKTSIKGYKRAREEIR 104
           L+ +D    ++  +M   +  E         ++             T          ++ 
Sbjct: 85  LLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLA 144

Query: 105 DRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFSR 163
             L        + KY+ G+ F++ D+   P +  L         +  P +  +   I  R
Sbjct: 145 KVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKR 204

Query: 164 PSY 166
           P+ 
Sbjct: 205 PAS 207

>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A* Length = 203

 Score = 89.6 bits (223), Expect = 2e-20
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)

Query: 2   DFEIRDIDL-----FNKPDNIFR-MNPYGQVPILV-ERDLILYESNIINEYIDERFPYPQ 54
           DF I  IDL      +  D  F  +NP GQVP+L  +   IL E   I +Y+ +  P   
Sbjct: 24  DFSIERIDLRTKKTESGKD--FLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLKPDRN 81

Query: 55  L-MSSDPLMRARARLMLLNF-EKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAP 112
           L      L R    +  LNF   E+      L +     S       + +++ + + +  
Sbjct: 82  LIAPPKALERYHQ-IEWLNFLASEVHKGYSPLFSSDTPESYL--PVVKNKLKSKFVYIND 138

Query: 113 LFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTP 172
           +  K K + GD F++ D  +  L     +  ++L+  +  L  Y  RI  RP+   +L  
Sbjct: 139 VLSKQKCVCGDHFTVADAYLFTLSQWAPHVALDLTDLSH-LQDYLARIAQRPNVHSALV- 196

Query: 173 AEKIMQ 178
            E +++
Sbjct: 197 TEGLIK 202

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A* Length = 209

 Score = 88.4 bits (220), Expect = 5e-20
 Identities = 39/182 (21%), Positives = 65/182 (35%), Gaps = 23/182 (12%)

Query: 2   DFEIRDIDLFN----KPDNIFR-MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLM 56
           D+EI  I+        P+      NP+GQVP L + DL L+ES  I +Y   +     L 
Sbjct: 27  DYEIVPINFATAEHKSPE--HLVRNPFGQVPALQDGDLYLFESRAICKYAARKNKPELLR 84

Query: 57  SSDPLMRARARLMLLNFEKEIF-----------IHLYMLENERNKTSIKGYKRAREEIRD 105
             +    A    + +  E   +           +   ML    ++  +       E+++ 
Sbjct: 85  EGNLEEAAMV-DVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVV---DENLEKLKK 140

Query: 106 RLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRP 164
            L        K KY+ GD  S+ D+    +   L          A P +  +   +  RP
Sbjct: 141 VLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFATPYASVLDAYPHVKAWWSGLMERP 200

Query: 165 SY 166
           S 
Sbjct: 201 SV 202

>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A* Length = 201

 Score = 88.1 bits (219), Expect = 7e-20
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 21/181 (11%)

Query: 2   DFEIRDIDLFNK-----PDNIFR-MNPYGQVPILVERD-LILYESNIINEYIDERFPYPQ 54
           DF +  +DL  K      D  +  +NP GQVP L+  D  +L E   I +Y+ +  P  Q
Sbjct: 24  DFTLVSVDLMKKRLENGDD--YFAVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQ 81

Query: 55  LM-SSDPLMRARARLMLLNF-EKEI---FIHLYMLENERNKTSIKGYKRAREEIRDRLIT 109
           L+   + + R +  +  LN+   E+   F  L+     R  T  +     R ++  +L  
Sbjct: 82  LLAPVNSISRYKT-IEWLNYIATELHKGFTPLF-----RPDTPEEYKPTVRAQLEKKLQY 135

Query: 110 LAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMES 169
           +        ++ G  F++ D  +  +L       +NL      +  + +R+  RP   ++
Sbjct: 136 VNEALKDEHWICGQRFTIADAYLFTVLRWAYAVKLNLEGLEH-IAAFMQRMAERPEVQDA 194

Query: 170 L 170
           L
Sbjct: 195 L 195

>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A* Length = 227

 Score = 88.1 bits (219), Expect = 9e-20
 Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 29/204 (14%)

Query: 2   DFEIRDIDLFNK-----PDNIFR-MNPYGQVP-ILVERDLILYESNIINEYIDERFPYPQ 54
           DFE+ ++DL  K      D  F  +NP G VP + ++   +L E  +I +Y+ +  P   
Sbjct: 26  DFELENVDLGTKKTGSGAD--FLQVNPKGYVPALQLDDGQVLTEDQVILQYLADLKPESG 83

Query: 55  LM-SSDPLMRARAR--LMLLN--FEKEIFIHLYMLENERNKTSIKGYK-RAREEIRDRLI 108
           LM  S    R R    L  ++    K  F   +      N  S +  K  A   +  RL 
Sbjct: 84  LMPPSGTFERYRLLEWLAFISTEIHK-TFGPFW------NPESPEASKQIALGLLSRRLD 136

Query: 109 TL-APLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYM 167
            +   L     +++GD +S+ D  ++ +L   +Y  I+LSK    ++ Y ER  +RP+  
Sbjct: 137 YVEDRLEAGGPWLMGDRYSVADAYLSTVLGWCEYLKIDLSKWPR-ILAYLERNQARPAVQ 195

Query: 168 -----ESLTPAEKIMQAGVHFGHQ 186
                E L  AE +     H  H 
Sbjct: 196 AAMKAEGLIQAENLYFQSHHHHHH 219

>4g9h_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 2.10A {Yersinia pestis} Length = 211

 Score = 87.3 bits (217), Expect = 2e-19
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 24/195 (12%)

Query: 2   DFEIRDIDLFNK-----PDNIFR-MNPYGQVPILVERD-LILYESNIINEYIDERFPYPQ 54
           DF I  +DL  K      D  +  +NP GQVP LV  D  +L E   I +Y+ ++ P   
Sbjct: 27  DFSIERVDLVTKKTETGAD--YLSINPKGQVPALVLDDGSLLTEGVAIVQYLADKVPDRH 84

Query: 55  L-MSSDPLMRARARLMLLNF-EKEI---FIHLYMLENERNKTSIKGYK-RAREEIRDRLI 108
           L   S  L R  A +  LNF   E+   F  L+      N  +   YK   RE +  +  
Sbjct: 85  LIAPSGTLSRYHA-IEWLNFIATELHKGFSPLF------NPNTPDEYKTIVRERLDKQFS 137

Query: 109 TLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYME 168
            +  +  ++ Y+LG +FS+ D  +  +    +   + + + +  L +Y  R+  RP+   
Sbjct: 138 YVDSVLAEHDYLLGKKFSVADAYLFTVSRWANALNLQIKERSH-LDQYMARVAERPAVKA 196

Query: 169 SLTPAEKIMQAGVHF 183
           +L  AE I    ++F
Sbjct: 197 ALA-AEDIKAENLYF 210

>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A* Length = 235

 Score = 86.7 bits (215), Expect = 4e-19
 Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 38/195 (19%)

Query: 1   MDFEIRDIDLFN----KPDNIFR-MNPYGQVPILVERD-----------LILYESNIINE 44
           + +    ++L           ++ +NP   VP+LV  +             + +S    E
Sbjct: 33  IPYTRHPVNLLKGEQHSDT--YKSLNPTNTVPLLVVSNINNTVSPSSASFSIGQSLAALE 90

Query: 45  YIDERFPYPQL----MSSDPLMRARARLMLLNFEKEIF------IHLYMLENERNKTSIK 94
           Y++E  P          S+P+ RA  R +      ++       I   +   + +     
Sbjct: 91  YLEEALPTNARPLLPPISNPVARAHVRTICNIIACDVQPVTNLKIQKKVKALDGDP---- 146

Query: 95  GYKRAREEIRDRLITLAPLF--LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP 152
               +R+        +  L      ++ +GDE ++ DV + P +W  +  G++L++   P
Sbjct: 147 -TVWSRDLATQGFGAVEKLLELSAGRFCVGDEITLADVCLVPAVWAAERVGMDLAR--FP 203

Query: 153 LIK-YAERIFSRPSY 166
           + K   E +    + 
Sbjct: 204 ITKRVFEEMLKEEAV 218

>1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5 Length = 201

 Score = 85.7 bits (213), Expect = 4e-19
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 21/181 (11%)

Query: 2   DFEIRDIDLFNK-----PDNIFR-MNPYGQVPILVERD-LILYESNIINEYIDERFPYPQ 54
           DFE   +DL  +      D  F  +NP G+VP L       L E+  I  YI ++ P   
Sbjct: 24  DFEAVKVDLAVRKTEAGED--FLTVNPSGKVPALTLDSGETLTENPAILLYIADQNPASG 81

Query: 55  LMSSDPLMRARARLM-LLNF-EKEI---FIHLYMLENERNKTSIKGYKRAREEIRDRLIT 109
           L  ++     R RL+  L+F   E    F+ L+                A E +++ L  
Sbjct: 82  LAPAEG-SLDRYRLLSRLSFLGSEFHKAFVPLFAPATSDEAK-----AAAAESVKNHLAA 135

Query: 110 LAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMES 169
           L        +  G+ FS+ D+ +  +L    Y GI+++   + L  YA +I  RP+   +
Sbjct: 136 LDKELAGRDHYAGNAFSVADIYLYVMLGWPAYVGIDMAAYPA-LGAYAGKIAQRPAVGAA 194

Query: 170 L 170
           L
Sbjct: 195 L 195

>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides} Length = 225

 Score = 85.5 bits (212), Expect = 9e-19
 Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 30/189 (15%)

Query: 2   DFEIRDIDLFNKPDNIF--------------RMNPYGQVPILVERDLILYESNIINEYID 47
            FE   +   N+  +                 +NP GQ+P L E  LIL ES  I  +I 
Sbjct: 26  PFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAITLHIA 85

Query: 48  ERFPYPQLMSSDPLMRARAR---------LMLLNFEKEIFIHLYMLENERNKTSIKGYKR 98
                 QL        A            +     E ++        +   + +I     
Sbjct: 86  RTQG-GQLGPRSEPEDALMVSWSLFAATAVEPPALEIQLIQRSGGGTSPEGQAAI---AI 141

Query: 99  AREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YA 157
           A E +R  L  L   F    Y++G  F++ D+ +A  L     +   L     P +  + 
Sbjct: 142 AAERLRRPLARLERHFAAEDYLVGGRFTVADLNLAETLRYGQAHPALL--EPFPAVAAWL 199

Query: 158 ERIFSRPSY 166
           +R  SRP++
Sbjct: 200 DRCQSRPAF 208

>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5 Length = 216

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 28/185 (15%)

Query: 2   DFEIRDIDLFN----KPDNIF-RMNPYGQVPILVERDLILYESNIINEYIDERFP--YPQ 54
           DFEI  +DL      +PD  F  +NP+GQ+P LV+ D +L+ES  IN YI  ++      
Sbjct: 27  DFEIVPVDLTTGAHKQPD--FLALNPFGQIPALVDGDEVLFESRAINRYIASKYASEGTD 84

Query: 55  LMSSDPLMRARAR-LMLLNFEKEIF-----------IHLYMLENERNKTSIKGYKRAREE 102
           L+ +     + A+  + L  E   F           +   +L    +   +    +  E+
Sbjct: 85  LLPATA---SAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVV---DKHAEQ 138

Query: 103 IRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIF 161
           +   L        +NKY+ GDEF++ D   A  L  L         +A P +K + E I 
Sbjct: 139 LAKVLDVYEAHLARNKYLAGDEFTLADANHASYLLYLSKTPKAGLVAARPHVKAWWEAIV 198

Query: 162 SRPSY 166
           +RP++
Sbjct: 199 ARPAF 203

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A* Length = 244

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 18/192 (9%)

Query: 2   DFEIRDIDLFN----KPDNIFR-MNPYGQVPILVERDLILYESNIINEYIDERFPYP-QL 55
             E+R +DL        +  F  +N  G++P L + D IL ES+ I  Y+  ++  P   
Sbjct: 27  PLELRTVDLVKGQHKSKE--FLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHW 84

Query: 56  MSSDPLMRARARLMLLNFE--------KEIFIHLYMLENERNKTSIKGYKRAREEIRDRL 107
             SD   RAR     L +                 +      +   +  +R R  +   L
Sbjct: 85  YPSDLQARARV-HEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQAL 143

Query: 108 ITLAPLFL-KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY 166
             L   FL    ++ G + ++ D++    L +    G  L +    L  +  R+ +    
Sbjct: 144 QWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGA 203

Query: 167 MESLTPAEKIMQ 178
                    I+ 
Sbjct: 204 ELCQEAHSIILS 215

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A Length = 218

 Score = 83.5 bits (206), Expect = 4e-18
 Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 26/187 (13%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQLMSSD 59
           +  E+  +   +      RM     VPIL + D   L ES  I  Y+D     P L    
Sbjct: 27  IPVELNVL-QNDDEATPTRMIGQKMVPILQKDDSRYLPESMDIVHYVDNLDGKPLLTGKR 85

Query: 60  PLMRAR--------------ARLMLLNFE-------KEIFIHLYMLENERNKTSIKGYKR 98
                                R     F+       ++ FI      +      +     
Sbjct: 86  NPAIEEWLRKVNGYVNQLLLPRFAKSAFDEFSTPAARQYFIRKKEASSGSFDNHLAHSAG 145

Query: 99  AREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAE 158
             ++I D L  L  L +     +  E S  D+ + PLL  L    +      + +  Y +
Sbjct: 146 LIKKIGDDLRLLDKL-IVQPNAVNGELSEDDIHLFPLLRNLTL--VAGIHWPTKVADYRD 202

Query: 159 RIFSRPS 165
            +  +  
Sbjct: 203 NMAKQTQ 209

>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A Length = 230

 Score = 80.4 bits (199), Expect = 5e-17
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 25/179 (13%)

Query: 1   MDFEIRDIDLF-NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSD 59
             + +R +     K  +     P+GQ+P   + DLIL+ES  I  +I +   +  L+  D
Sbjct: 47  QPYHVRRLSFEAMKEASHLAYQPFGQIPSYEQGDLILFESGAIVMHIAQH--HSGLLPED 104

Query: 60  PLMRARAR-----------LMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLI 108
            L RAR               +LNF     + L+      ++  +    R +E++  RL 
Sbjct: 105 QLRRARTVAWMFAALNTIEPSILNF---TTVWLFERNEPWHEARL---ARTKEQLLKRLD 158

Query: 109 TLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFSRPSY 166
            L+      +++ G  FS  D+++  +L RL+  GI         +  Y ER  +RP++
Sbjct: 159 ELSAWLGDREWLEGS-FSAADILMICVLRRLESSGI---LKDYGNLLAYVERGKARPAF 213

>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV} Length = 310

 Score = 80.6 bits (198), Expect = 2e-16
 Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 27/170 (15%)

Query: 1   MDFEIRDIDLF-NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSD 59
           +++    I     KPD       Y + P+L     I  ++ ++   +++    P      
Sbjct: 27  VNWRSVTIPSIMPKPDLTALTGGYRKTPVLQIGADIYCDTALMARRLEQEKASPAFYPQG 86

Query: 60  PLMRARA--------------------RLMLLNFEKEIFIHLYMLENERNKTSIKGY--- 96
                                        M + F K           +R+     G    
Sbjct: 87  QEFAVAGLAAWADSVLFLHAVSLVFQPESMAVRFAKVPPDAAKAFIADRSMLFNGGTASR 146

Query: 97  ---KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYG 143
              ++ + +    +  L          L    S+ D  +A  LW L    
Sbjct: 147 PPVEQVKHQWPTFMSRLESQLSHGGDFLFGAPSIADFSVAHTLWFLKQTP 196

>2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A Length = 247

 Score = 77.4 bits (191), Expect = 8e-16
 Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 19/181 (10%)

Query: 2   DFEIRDIDLFN----KPDNIF-RMNPYGQVPILVERDLILYESNIINEYIDERFPYP-QL 55
            FE+R +DL           F ++NP  +VP L + D  L ES  I  Y+  ++  P   
Sbjct: 34  PFELRIVDLIKGQHLSDA--FAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYW 91

Query: 56  MSSDPLMRARARLMLLNFE---------KEIFIHLYMLENERNKTSIKGYKRAREEIRDR 106
              D   RAR     L ++         + ++  +          S +       E+   
Sbjct: 92  YPQDLQARARV-DEYLAWQHTTLRRSCLRALWHKVMFPVFLGEPVSPQTLAATLAELDVT 150

Query: 107 LITLAPLFLK-NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS 165
           L  L   FL+   ++ G   S+ D+V    L      G  + +    L  + +R+ +   
Sbjct: 151 LQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVG 210

Query: 166 Y 166
            
Sbjct: 211 E 211

>2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear protein, RNA-binding protein; HET: MSE; 2.0A {Homo sapiens} Length = 174

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 25/187 (13%), Positives = 58/187 (31%), Gaps = 24/187 (12%)

Query: 2   DFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQLMSSDP 60
           +  + +  L     N +      Q+P+L   +   L     I  ++ ++     L+ S  
Sbjct: 6   ELSLLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLMGLTTIAAHLVKQANKEYLLGSTA 65

Query: 61  LMRARARLMLLNF-EKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKY 119
             +A      L +   ++                     ++ +I   L+ L        Y
Sbjct: 66  EEKAMV-QQWLEYRVTQVD-----------------GHSSKNDIHTLLMDLNSYLEDKVY 107

Query: 120 MLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRPSYMESLTP---AEK 175
           + G  F++ D+++   L R         K     + ++   I   P   + L+     + 
Sbjct: 108 LTGYNFTLADILLYYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHYPGIRQHLSSVVFIKN 167

Query: 176 IMQAGVH 182
            +    H
Sbjct: 168 RLYTNSH 174

>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 10/72 (13%)

Query: 539 SYLH-DNKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKE 588
            Y+H + ++GV+VE N +          ++  KD+AMHIA M P  +S+++IP + +EKE
Sbjct: 8   HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKE 67

Query: 589 YSLAVLKAQQLG 600
             + +  A   G
Sbjct: 68  RQIYIQAALNEG 79

>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 48/139 (34%)

Query: 442 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP--------- 490
           A++G+I  YI  +++VG LVE+NCETDFVA+N  F   +K +A  I    P         
Sbjct: 1   AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIP 60

Query: 491 ---------INLDQLNN-------------------LK---------IKNNLLTVDEKCK 513
                    I +    N                   L+         +K++ + V E  +
Sbjct: 61  AEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQ 120

Query: 514 ELISRIGENIKIRRFKLFK 532
           + I++IGENI +RRF  F+
Sbjct: 121 QAIAKIGENIVVRRFCRFE 139

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori} Length = 216

 Score = 70.7 bits (174), Expect = 7e-14
 Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 16/189 (8%)

Query: 1   MDFEIRDIDLFN----KPDNIF-RMNPYGQVPILVERDLILYESNIINEYIDERFPYP-Q 54
           +  +I  ++LF     +    F ++NP   VP L + + +L+ES  I  Y+ +++    Q
Sbjct: 27  IPIQIEIVNLFKKEQLQES--FLKLNPQHCVPTLDDNNFVLWESRAIACYLADKYGKDDQ 84

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL- 113
               D   RA      L F  +       +          G    ++ ++D L +     
Sbjct: 85  WYPKDLQKRAVV-NQRLYF--DSASLYVKIRAICFPILFLGETEIKQSLKDDLNSTLSFL 141

Query: 114 --FL-KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
             FL K K++  D  ++ D  I   +  +   G ++S   + + ++ +     P   E+ 
Sbjct: 142 NQFLEKTKWVAADHPTIADTSIYASMSSILAVGWDISSFPN-IQRWIKDCLLLPGAPENE 200

Query: 171 TPAEKIMQA 179
             A     A
Sbjct: 201 DGARTFGDA 209

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A* Length = 221

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 25/191 (13%)

Query: 2   DFEIRDIDLFN----KPDNIF-RMNPYGQVPILVERDLILYESNIINEYIDERF-PYPQL 55
           + E + I+L      KP+  F ++NP   +P+L +   I+ ES+ I  Y+  ++     L
Sbjct: 28  ELEQKTINLLTGDHLKPE--FVKLNPQHTIPVLDDNGTIITESHAIMIYLVTKYGKDDSL 85

Query: 56  MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL-- 113
              DP+ +AR     L+FE  +      +     +    G     E+  + +     L  
Sbjct: 86  YPKDPVKQARV-NSALHFESGVLFA--RMRFIFERILFFGKSDIPEDRVEYVQKSYELLE 142

Query: 114 -FLKNKYMLGDEFSMLDVVIAPLLWRL-DYYGINLSKSASPLIK-YAERIFSRPSYMESL 170
             L + ++ G   ++ D      +  +     +  SK   P I  + +R+   P Y    
Sbjct: 143 DTLVDDFVAGPTMTIADFSCISTISSIMGVVPLEQSK--HPRIYAWIDRLKQLPYY---- 196

Query: 171 TPAEKIMQAGV 181
              E+    G 
Sbjct: 197 ---EEANGGGG 204

>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 Length = 219

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 23/192 (11%)

Query: 2   DFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFP----YPQLM 56
           D ++   D     +   R  P  +VP  V      L E+  IN Y+ +         QL+
Sbjct: 27  DVKVVTPD--AAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYLVKLSQDDKMKTQLL 84

Query: 57  SSDPLMRARAR-LMLLNFEK-EIFIHLYML------ENERNKTSIKGYKRAREEIRDRLI 108
            +D  + A+A+ +   +    ++ I +             NK   K    A + +   + 
Sbjct: 85  GADDDLNAQAQIIRWQSLANSDLCIQIANTIVPLKGGAPYNK---KSVDSAMDAVDKIVD 141

Query: 109 TLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSAS-P-LIKYAERIFSRPSY 166
                     Y+  +  S+ D+V A +  R           A  P ++++   + + P  
Sbjct: 142 IFENRLKNYTYLATENISLADLVAASIFTRYFESLFGTEWRAQHPAIVRWFNTVRASPFL 201

Query: 167 ---MESLTPAEK 175
               +    A+K
Sbjct: 202 KDEYKDFKFADK 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 6e-12
 Identities = 107/670 (15%), Positives = 198/670 (29%), Gaps = 220/670 (32%)

Query: 2   DFEIRDI--------------DLFNKPDN---------IFRMNPYGQVPILVERDL---- 34
           +F+ +D+               +    D                   V   VE  L    
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 35  ------ILYESN----IINEYIDER---------FPYPQLMSSDPLMRARARLMLLNFEK 75
                 I  E      +   YI++R         F    +    P ++ R  L+ L   K
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 76  EIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF------LKNKYMLGDEFSMLD 129
            + I   +L +   KT +     A +      +     F      LKN         ML 
Sbjct: 152 NVLID-GVLGS--GKTWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML- 202

Query: 130 VVIAPLLWRLDYYGINLSKSASPLIKYAE-------RIFSRPSYMESLTPAEKIMQAGVH 182
                LL+++D    + S  +S +            R+     Y   L     ++   V 
Sbjct: 203 ---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LVLLNV- 253

Query: 183 FGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIY------QLGFSKG---T 233
                   N K  +  F    KI +    K +  +  A    +       +  +     +
Sbjct: 254 -------QNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 234 LL--FVGTK-----RQAR-------GVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQ 279
           LL  ++  +     R+          +IA E++R G+      W      N+K +     
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDGL----ATW-----DNWKHVNCD-- 353

Query: 280 RLKEMDLFITNGSIRKLSKKEALLFYRKQ-MKLNRVIGGIKNMNIIPDAIFIIDVGYHKG 338
           +L      I   S+  L   E    YRK   +L               ++F         
Sbjct: 354 KLTT----IIESSLNVLEPAE----YRKMFDRL---------------SVFPPSA----- 385

Query: 339 AVSEAIKLNIP--IIGVVDTNHSPDGINYVIPGNDDSAKSIAL-----YTKGIVDAFLDA 391
                   +IP  ++ ++  +     +  V+  N     S+        T  I   +L+ 
Sbjct: 386 --------HIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 392 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYI 451
           K   +L ++         +++++             I       ++      D     +I
Sbjct: 436 KV--KLENEY-----ALHRSIVDH----------YNIPKTFDSDDLI-PPYLDQYFYSHI 477

Query: 452 ---------SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPIN-----LDQLN 497
                     E++     +    DF      F++      K+  ++T  N     L+ L 
Sbjct: 478 GHHLKNIEHPERMTLFRMV--FLDF-----RFLE-----QKIRHDSTAWNASGSILNTLQ 525

Query: 498 NLKI-KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDN--KIGVIVEYNG 554
            LK  K  +   D K + L++ I +      F L K   NLI   + +  +I ++ E   
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILD------F-LPKIEENLICSKYTDLLRIALMAEDEA 578

Query: 555 DNESAVKDVA 564
             E A K V 
Sbjct: 579 IFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 3e-11
 Identities = 61/354 (17%), Positives = 118/354 (33%), Gaps = 83/354 (23%)

Query: 6   RDIDLFNKPDNIFRMNPYGQVPILVERDLILYES---NIINEYIDERF---PYPQLMSSD 59
           R   + +     F          L    + L      +++ +Y+D R    P  ++++++
Sbjct: 273 RFKQVTD-----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTN 326

Query: 60  PLMRARARLMLLN-FEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK 118
           P          L+   + I   L   +N ++        +    I   L  L P   +  
Sbjct: 327 PR--------RLSIIAESIRDGLATWDNWKHVN----CDKLTTIIESSLNVLEPAEYRKM 374

Query: 119 YMLGDEFSML--DVVIAP----LLWR-LDYYG----INLSKSASPLIK-YAERIFSRPS- 165
           +   D  S+      I      L+W  +        +N     S + K   E   S PS 
Sbjct: 375 F---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 166 YMESLTPAEKIMQAGVH-------FGHQTRFWN----PKMSSYIF---GHRNKIHIINLE 211
           Y+E     E   +  +H          +T   +    P +  Y +   GH    H+ N+E
Sbjct: 432 YLELKVKLEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIE 485

Query: 212 KTLYMYEKA--IRYIYQ-LGFSKGTLLFVGTKRQARGVIAN--EAVRAGMPFI------D 260
                 E+    R ++    F +  +    T   A G I N  + ++   P+I       
Sbjct: 486 ----HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 261 QRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR-KLSKKEALLFYRKQMKLNR 313
           +R +  +L     I+ ++   K  DL      +R  L  ++  +F     ++ R
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL------LRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 9e-10
 Identities = 99/688 (14%), Positives = 208/688 (30%), Gaps = 171/688 (24%)

Query: 371  DDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKL 430
            D          K I+  F DA               +CK         LSK EEI     
Sbjct: 8    DFETGEHQYQYKDILSVFEDA----------FVDNFDCKDVQDMPKSILSK-EEI----- 51

Query: 431  GKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFS-KKIAKLITENT 489
               I+   +  +    +   +  K   +V+   E + +  N +F+    K   +  +  T
Sbjct: 52   -DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 490  PINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVI 549
             + ++Q + L   N +       K  +SR+   +K+R+  L +        L   K  V+
Sbjct: 110  RMYIEQRDRLYNDNQVFA-----KYNVSRLQPYLKLRQ-ALLE--------LRPAK-NVL 154

Query: 550  VEYNGDN--------ESAVKDVAMHIAAMKPI---ALSSDQIPKKIIEKEYSLAVLKAQQ 598
            ++  G                  +       I    L +   P+ ++E    L       
Sbjct: 155  ID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 599  LGEALMKGDAYNINSSIIKNIISEI---SEIVSCGIELAIVIGGGNICRGISNKIQNIDR 655
                        +    I+  +  +       +C   L ++    N+           + 
Sbjct: 213  WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVL---LNVQ----------NA 256

Query: 656  STADYMG----MLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEG 711
               +       +L T      + D L+     +   + IS++    +  P       +E 
Sbjct: 257  KAWNAFNLSCKILLTTRFK-QVTDFLS-----AATTTHISLDHHSMTLTP-------DEV 303

Query: 712  KVVIFAGGIGNPFFT----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYK 767
            K  +    +            TT   R + I   I       DG+   D         +K
Sbjct: 304  KS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR------DGLATWDN--------WK 348

Query: 768  KITFD---EVISKKLEIMDST-------AFS-FCRDQKLPIRVFSIIKSGALKRVIEGKN 816
             +  D    +I   L +++           S F     +P  + S+I    +K  +    
Sbjct: 349  HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM--- 405

Query: 817  EGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLT 876
                      ++++ + K      L     +++  K+          + +I ++    L 
Sbjct: 406  ----------VVVNKLHK----YSL-----VEKQPKESTIS------IPSIYLELKVKLE 440

Query: 877  KLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPP-LTKE 935
                +        H   +  +      I K   ++    L P       Y  I   L   
Sbjct: 441  NEYAL--------HRSIVDHYN-----IPKTFDSD---DLIPPYLDQYFYSHIGHHLKNI 484

Query: 936  RREEIVKLIKNITEETKISIRKIRRD-SNENLKKLLKNKILSVDNEYR-------AQYDI 987
               E + L + +  + +   +KIR D +  N    + N +  +   Y+        +Y+ 
Sbjct: 485  EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYE- 542

Query: 988  QKLTD--KFILEINQ-LLINKEKEILTL 1012
            + +     F+ +I + L+ +K  ++L +
Sbjct: 543  RLVNAILDFLPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-04
 Identities = 62/417 (14%), Positives = 134/417 (32%), Gaps = 109/417 (26%)

Query: 281 LKEMDLFITNGSIRK-LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI----FIIDVGY 335
           +   D        +  LSK+E                 I ++ +  DA+     +     
Sbjct: 30  VDNFDCKDVQDMPKSILSKEE-----------------IDHIIMSKDAVSGTLRLFWTLL 72

Query: 336 HKGA------VSEAIKLNIPI----IGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 385
            K        V E +++N       I       S     Y I   D       ++ K  V
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNV 131

Query: 386 DAFLDAKTVGELRSKTLAPIMECKKALIEAN-------------GKLSKAEEILR----- 427
                       R +   P ++ ++AL+E               GK   A ++       
Sbjct: 132 S-----------RLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 428 IKLGKKI--LNISNRNAKDGVIAIY--ISEKVGSLVEINCETDFVAKNN-EFIKFSKKIA 482
            K+  KI  LN+ N N+ + V+ +   +  ++        +     K     I+   ++ 
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELR 235

Query: 483 KLITENT-PINLDQLNNLKIKNNLLTVDEKCKELI-SR---IGENIKIRRFKLFKTNNNL 537
           +L+        L  L N++        +  CK L+ +R   + + +          +++ 
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 538 ISYLHDNKIGVIVEYNGDN-----ESAVK----DVAMHIAAMKPIALS---------SDQ 579
           ++   D    ++++Y            +      +++ IA      L+          D+
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDK 354

Query: 580 IPKKIIEKEYSLAVLKAQQLGE-----ALMKGDAYNINSSIIK----NIISEISEIV 627
           +   IIE   SL VL+  +  +     ++    A +I + ++     ++I     +V
Sbjct: 355 L-TTIIES--SLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVV 407

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5 Length = 210

 Score = 64.5 bits (158), Expect = 9e-12
 Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 22/159 (13%)

Query: 2   DFEIRDIDLFN---KPDNIF-RMNPYGQVPILVERDLILYESNIINEYIDERFPYP-QLM 56
              ++  ++ +   +      ++NP   +P LV+   +++ES  I  Y+ E +     L 
Sbjct: 25  TLNLKKTNVHDPVERDA--LTKLNPQHTIPTLVDNGHVVWESYAIVLYLVETYAKDDTLY 82

Query: 57  SSDPLMRARARLMLLNFEK-EIF------IHLYMLENERNKTSIKGYKRAREEIRDRLIT 109
             DP +R+      L F+   ++      IHL M + + +   ++  K A + +   +  
Sbjct: 83  PKDPKVRSVV-NQRLFFDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLLEQFVT- 140

Query: 110 LAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSK 148
                 +  Y   D  ++ D+ +   +  L++   +L  
Sbjct: 141 ------ERAYAAADHLTVADICLLGTVTALNWLKHDLEP 173

>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans} Length = 208

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 15/160 (9%)

Query: 21  NPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIF-- 78
            P  Q+P+L      L +S  I  Y+  +F         P   A     + +  K+    
Sbjct: 47  TPMKQLPVLNIDGFELPQSGAILRYLARKFG---FAGKTPEEEAWVD-AVHDLFKDFLAE 102

Query: 79  IHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK------NKYMLGDEFSMLDVVI 132
              +  E    K++ +  K   E       T   +         + +++G + +  D+V+
Sbjct: 103 FKKFAAERRSGKSAEEVEKFRSEFFLPARNTYFNILNGLLEKSNSGFLIGSDITFADLVV 162

Query: 133 APLLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
              L  L  YG+      + L    E++ S P    Y+  
Sbjct: 163 VDNLLTLKNYGLFDESEFTKLAALREKVNSYPGIKEYIAK 202

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Length = 64

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDG 445
             + + +LR KT    + CKKAL    G L +AE  L  +  K+  + +      G
Sbjct: 9   SKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64

>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ... Length = 210

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 32/176 (18%), Positives = 66/176 (37%), Gaps = 15/176 (8%)

Query: 2   DFEIRDIDLFNKPDNIFRMN-PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDP 60
            ++   + +    +   + +  YGQ+P   + DL LY+SN I  ++        L   D 
Sbjct: 28  SWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTL---GLYGKDQ 84

Query: 61  LMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK-- 118
              A    M+ +  +++      L     +    G     + +  +L     L  +N+  
Sbjct: 85  QEAALVD-MVNDGVEDLRCKYISLIYTNYE---AGKDDYVKALPGQLKPFETLLSQNQGG 140

Query: 119 --YMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
             +++GD+ S  D  +  LL   +        +   L  Y  R+ +RP    ++ S
Sbjct: 141 KTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLAS 196

>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5 Length = 209

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 26/191 (13%)

Query: 2   DFEIRDIDLFN----KPDNIF-RMNPYGQVPILVERDLILYESNIINEYIDERF-PYPQL 55
           +  ++  DL      KP+  F ++NP   +P LV+    L+ES  I  Y+ E++    +L
Sbjct: 25  ELNLKLTDLMKGEHMKPE--FLKLNPQHCIPTLVDNGFALWESRAIQIYLAEKYGKDDKL 82

Query: 56  MSSDPLMRAR--ARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIR--DRLITLA 111
              DP  RA    RL       ++        +              E  +     +   
Sbjct: 83  YPKDPQKRAVVNQRLYF-----DMGTLYQRFADYHYPQIFAKQPANPENEKKMKDAVGFL 137

Query: 112 PLFLK-NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
             FL+  +Y  G++ ++ D+ +A  +   +  G + +   + +  +  R  +        
Sbjct: 138 NTFLEGQEYAAGNDLTIADLSLAATIATYEVAGFDFAPYPN-VAAWFARCKANA------ 190

Query: 171 TPAEKIMQAGV 181
            P   + QAG 
Sbjct: 191 -PGYALNQAGA 200

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5 Length = 254

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 21  NPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80
             +  +P  ++ D+ L +S  I  YI ++     ++   P  RA    ML     +I   
Sbjct: 50  LEFPNLPYYIDGDVKLTQSMAIIRYIADKH---NMLGGCPKERAEI-SMLEGAVLDIRYG 105

Query: 81  LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 140
           +  +   ++  ++K       ++ + L           Y+ GD  +  D ++   L  + 
Sbjct: 106 VSRIAYSKDFETLK--VDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVL 163

Query: 141 YYGINLSKSASPLIKYAERIFSRPS---YMES 169
           Y       +   L+ + +RI + P    Y++S
Sbjct: 164 YMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKS 195

>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A Length = 229

 Score = 62.1 bits (151), Expect = 9e-11
 Identities = 25/176 (14%), Positives = 63/176 (35%), Gaps = 12/176 (6%)

Query: 2   DFEIRDIDLFNKPDNIFR--MNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSD 59
           +FE   ++   + + + +  +  + QVP++    + L ++  I  YI  ++    L   D
Sbjct: 29  EFEEVFLETREQYEKLLQSGILMFQQVPMVEIDGMKLVQTRAILNYIAGKYN---LYGKD 85

Query: 60  PLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREE-IRDRLITLAPLFLKN- 117
              RA    M +    ++   L        +  +K      E+           +   + 
Sbjct: 86  LKERALID-MYVGGTDDLMGFLLSFPFLSAEDKVKQCAFVVEKATSRYFPAYEKVLKDHG 144

Query: 118 -KYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
             +++G+  S  D+ +   +  ++    +       L  + +RI S P    ++  
Sbjct: 145 QDFLVGNRLSWADIHLLEAILMVEEKKSDALSGFPLLQAFKKRISSIPTIKKFLAP 200

>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A* Length = 219

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 26/152 (17%), Positives = 62/152 (40%), Gaps = 9/152 (5%)

Query: 21  NPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80
             +  +P L++ D+ L +SN I  YI  +     +     + + R   +L N   ++ + 
Sbjct: 54  LDFPNLPYLIDGDVKLTQSNAILRYIARKH---NMCGETEVEKQRVD-VLENHLMDLRMA 109

Query: 81  LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 140
              L    +   +K      E++  +L  L+       + +GD+ + +D +   +L +  
Sbjct: 110 FARLCYSPDFEKLK--PAYLEQLPGKLRQLSRFLGSRSWFVGDKLTFVDFLAYDVLDQQR 167

Query: 141 YYGINLSKSASPLIKYAERIFSRP---SYMES 169
            +  +  +    L ++ +R  +     +YM S
Sbjct: 168 MFVPDCPELQGNLSQFLQRFEALEKISAYMRS 199

>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis} Length = 218

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
               +P   + +  L +S  I  YI ++     ++ + P+ RA+   M+     ++   +
Sbjct: 51  ELPNLPYYKDGNFSLTQSLAILRYIADKH---NMIGNTPVERAK-ISMIEGGLVDLRAGV 106

Query: 82  YMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDY 141
             +  +     +K      +++   L   +     N Y+ G   + LD +    L  + Y
Sbjct: 107 SRIAYQETFEQLK--VPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRY 164

Query: 142 YGINLSKSASPLIKYAERIFSRP---SYMES 169
                 ++   L+++  RI + P   ++MES
Sbjct: 165 LDPTSVEAFPNLMQFIHRIEALPNIKAFMES 195

>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ... Length = 221

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 10/155 (6%)

Query: 21  NPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80
             + QVP++    + L ++  I  YI  ++    L   D   RA    M +    ++   
Sbjct: 49  LMFQQVPMVEIDGMKLVQTRAILNYIASKYN---LYGKDIKERALID-MYIEGIADLGEM 104

Query: 81  LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN---KYMLGDEFSMLDVVIAPLLW 137
           + +L     +         +E+I++R        LK+    Y++G++ S  D+ +  LL+
Sbjct: 105 ILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHLVELLY 164

Query: 138 RLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
            ++    +L  S   L     RI + P    +++ 
Sbjct: 165 YVEELDSSLISSFPLLKALKTRISNLPTVKKFLQP 199

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5 Length = 218

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 22/160 (13%)

Query: 2   DFEIRDIDLFN----KPDNIF-RMNPYGQVPILVERDLILYESNIINEYIDERFPYP-QL 55
           + +++ +++      KPD  F  +NP   +P + +  L+L+ES +I  Y+   +     L
Sbjct: 27  ELDLKVLNIMEGEQLKPD--FVELNPQHCIPTMDDHGLVLWESRVILSYLVSAYGKDENL 84

Query: 56  MSSDPLMRAR--ARLM-----LLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLI 108
              D   RA    RL      L     + +     L    ++T       A       L 
Sbjct: 85  YPKDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLDQTKKAKLAEALGWFEAMLK 144

Query: 109 TLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSK 148
                  + ++   + F++ D+ +   + +++ +  +L  
Sbjct: 145 -------QYQWSAANHFTIADIALCVTVSQIEAFQFDLHP 177

>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A* Length = 234

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 21  NPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80
             +  +P  ++ D+ L +S  I  YI ++     ++   P  RA    ML     +I   
Sbjct: 49  LEFPNLPYYIDGDVKLTQSMAIIRYIADKH---NMLGGCPKERAEI-SMLEGAVLDIRYG 104

Query: 81  LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 140
           +  +   ++  ++K       ++ + L           Y+ GD  +  D ++   L  + 
Sbjct: 105 VSRIAYSKDFETLK--VDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVL 162

Query: 141 YYGINLSKSASPLIKYAERIFSRP---SYMES 169
           Y       +   L+ + +RI + P    Y++S
Sbjct: 163 YMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKS 194

>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 Length = 280

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 21  NPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80
             +  +P  ++ D+ L +S  I  YI ++     ++   P  RA    ML     +I   
Sbjct: 49  LEFPNLPYYIDGDVKLTQSMAIIRYIADKH---NMLGGCPKERAEI-SMLEGAVLDIRYG 104

Query: 81  LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 140
           +  +   ++  ++K       ++ + L           Y+ GD  +  D ++   L  + 
Sbjct: 105 VSRIAYSKDFETLK--VDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVL 162

Query: 141 YYGINLSKSASPLIKYAERIFSRP---SYMES 169
           Y       +   L+ + +RI + P    Y++S
Sbjct: 163 YMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKS 194

>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 Length = 224

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
            +  +P L++    + +SN I  YI  +     +       + R   ++ N   +    L
Sbjct: 59  DFPNLPYLLDGKNKITQSNAILRYIARKH---NMCGETEEEKIRV-DIIENQVMDFRTQL 114

Query: 82  YMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDY 141
             L    +   +K   +  EE+  +L   +    K  +  G++ + +D +   +L +   
Sbjct: 115 IRLCYSSDHEKLK--PQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILDQNRI 172

Query: 142 YGINLSKSASPLIKYAERIFSRP---SYMES 169
           +          L  +  R  +     +Y++S
Sbjct: 173 FDPKCLDEFPNLKAFMCRFEALEKIAAYLQS 203

>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A* Length = 216

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 21  NPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80
                +P  ++    L +S  I  YI ++     ++ +    RAR   M+     ++   
Sbjct: 49  LDLPNLPYYIDDKCKLTQSLAILRYIADKH---GMIGTTSEERARV-SMIEGAAVDLRQG 104

Query: 81  LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 140
           +  +  +     +K  +   +++   +   +    KN Y+ G   S +D ++   L  + 
Sbjct: 105 ISRISYQPKFEQLK--EGYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEALDAIR 162

Query: 141 YYGINLSKSASPLIKYAERIFSRP---SYMES 169
           Y   +       L ++  RI + P   +YMES
Sbjct: 163 YLEPHCLDHFPNLQQFMSRIEALPSIKAYMES 194

>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A Length = 221

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 24/154 (15%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
            +GQVP++    ++L ++  I  Y+  ++    L   D   R R   M  +  +++ + +
Sbjct: 50  LFGQVPLVEIDGMMLTQTRAILSYLAAKY---NLYGKDLKERVRID-MYADGTQDLMMMI 105

Query: 82  YMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN---KYMLGDEFSMLDVVIAPLLWR 138
            +   +  K   + Y       + R   +    LK+    +++G++ S  D+ +   +  
Sbjct: 106 AVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQLLEAILM 165

Query: 139 LDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
           ++     +      L  +  RI + P    +++ 
Sbjct: 166 VEELSAPVLSDFPLLQAFKTRISNIPTIKKFLQP 199

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A* Length = 209

 Score = 59.1 bits (144), Expect = 7e-10
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 32/194 (16%)

Query: 2   DFEIRDIDLFN----KPDNIFR-MNPYGQVPILVERDLILYESNIINEYIDERF-PYPQL 55
           +   + ++L      KP+  F  +NP   +P LV+    L+ES  I  Y+ E++     L
Sbjct: 26  ELNKKLLNLQAGEHLKPE--FLKINPQHTIPTLVDNGFALWESRAIQVYLVEKYGKTDSL 83

Query: 56  MSSDPLMRAR--ARLML------LNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRL 107
               P  RA    RL         +F    +  ++                A ++I    
Sbjct: 84  YPKCPKKRAVINQRLYFDMGTLYQSFANYYYPQVF--------AKAPADPEAFKKIEAAF 135

Query: 108 ITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYM 167
             L        Y  GD  ++ D+ +   +   +     +SK A+ + ++ E         
Sbjct: 136 EFLNTFLEGQDYAAGDSLTVADIALVATVSTFEVAKFEISKYAN-VNRWYEN-------A 187

Query: 168 ESLTPAEKIMQAGV 181
           + +TP  +   AG 
Sbjct: 188 KKVTPGWEENWAGC 201

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A* Length = 202

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 22/156 (14%), Positives = 53/156 (33%), Gaps = 13/156 (8%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
               +P+L      + +S  I  ++   F    L     L + R    +    ++IF  +
Sbjct: 46  YSNAMPVLDIDGTKMSQSMCIARHLAREFG---LDGKTSLEKYRV-DEITETLQDIFNDV 101

Query: 82  YMLENERNKTSIKGYKRAREEIRDRLIT-----LAPLFLKNKYMLGDEFSMLDVVIAPLL 136
             ++           ++  E+   RL       L      + + +G+  ++ D+     L
Sbjct: 102 VKIKFAPEAAKEA-VQQNYEKSCKRLAPFLEGLLVSNGGGDGFFVGNSMTLADLHCYVAL 160

Query: 137 WRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
                +   L K    ++   +R+   P   +Y++ 
Sbjct: 161 EVPLKHTPELLKDCPKIVALRKRVAECPKIAAYLKK 196

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1* Length = 198

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 23/179 (12%), Positives = 67/179 (37%), Gaps = 24/179 (13%)

Query: 2   DFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPL 61
            +E   I+  + P+    + P+G++PIL    L L++S  I  Y+ +      L  +  +
Sbjct: 27  QYEDHRIEQADWPEIKSTL-PFGKIPILEVDGLTLHQSLAIARYLTKNT---DLAGNTEM 82

Query: 62  MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK----- 116
            +      +++   +        E +++       ++   E+        P  ++     
Sbjct: 83  EQCHVD-AIVDTLDDFMSCFPWAEKKQDV-----KEQMFNELLTYNA---PHLMQDLDTY 133

Query: 117 ---NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
               ++++G   +  D         L  +  +L  +   L+   +++ + P   ++++ 
Sbjct: 134 LGGREWLIGMSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIKR 192

>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A* Length = 222

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 16/158 (10%)

Query: 21  NPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80
             + QVP++    + L ++  I  YI ++     L   +   R     M +    ++   
Sbjct: 50  LLFQQVPMVEIDGMKLVQTRSILHYIADKHN---LFGKNLKERTLID-MYVEGTLDLLEL 105

Query: 81  LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK------NKYMLGDEFSMLDVVIAP 134
           L M    +     K      ++   R     P+F K        +++G++ S+ DV++  
Sbjct: 106 LIMHPFLKPDDQQKEVVNMAQKAIIRYF---PVFEKILRGHGQSFLVGNQLSLADVILLQ 162

Query: 135 LLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
            +  L+    N+  +   L +Y  ++ + P    ++E 
Sbjct: 163 TILALEEKIPNILSAFPFLQEYTVKLSNIPTIKRFLEP 200

>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A* Length = 211

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
           P+ QVPIL   DLIL +S  I  Y+ +++    +     L    A  M+    ++I    
Sbjct: 55  PFEQVPILQIGDLILAQSQAIVRYLSKKY---NICGESELNEFYAD-MIFCGVQDIHYKF 110

Query: 82  YMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK---------NKYMLGDEFSMLDVVI 132
                 +             E   +        LK           Y +G+  +  D+ +
Sbjct: 111 NNTNLFKQNE-----TTFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYADLAV 165

Query: 133 APLLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
             L   ++    +  K+   L  + E I + P   +Y+ +
Sbjct: 166 FNLYDDIETKYPSSLKNFPLLKAHNEFISNLPNIKNYITN 205

>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5 Length = 248

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 23/187 (12%), Positives = 62/187 (33%), Gaps = 24/187 (12%)

Query: 2   DFEIRDIDL---FNKPDNIFRMNPYGQVPILVER--DLILYESNIINEYIDERFPYPQLM 56
            ++  D+D            +   +   P+L++R  +  + +   I  Y+ ER     ++
Sbjct: 44  SWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAIAIYLGERL---DIL 100

Query: 57  SSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIR------DRLITL 110
            +    R  +   ++N   ++   L +       T  + ++     ++            
Sbjct: 101 PATVEGRTLS-AKIVNDANDVLDELTLNGGREMWTP-EKWQEFVPRLQKWIRIFADTGAR 158

Query: 111 APLFLKNKYMLG-DEFSMLDVVIAPLL----WRLDYYGINLSKSASPLIKYAERIFSRPS 165
             L   + +MLG ++  + D+V A L      R       +  ++  +   + R+ +   
Sbjct: 159 NGLSAASGFMLGTEKIGVADIVTAILWTTVADRFPAIKGIIEDTSPIIWGLSRRVVATAP 218

Query: 166 ---YMES 169
                  
Sbjct: 219 LAALNSK 225

>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A* Length = 208

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 21/159 (13%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
            +GQ+P L + D  + +S  I  ++  ++    L   + +       M     +++ +  
Sbjct: 46  QFGQLPCLYDGDQQIVQSGAILRHLARKYN---LNGENEMETTYI-DMFCEGVRDLHVKY 101

Query: 82  YMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK--------NKYMLGDEFSMLDVVIA 133
             +     +          + I    +     F K           +LGD+ S  D  + 
Sbjct: 102 TRMIYMAYE---TEKDPYIKSILPGEL---AKFEKLLATRGNGRNLILGDKISYADYALF 155

Query: 134 PLLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
             L        +       L  + +R+  RP    Y E 
Sbjct: 156 EELDVHQILDPHCLDKFPLLKVFHQRMKDRPKLKEYCEK 194

>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ... Length = 218

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 9/152 (5%)

Query: 21  NPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIH 80
             +  +P L++    + +SN I  YI  +     L       + R   +L N   +  + 
Sbjct: 55  LDFPNLPYLIDGTHKITQSNAILRYIARKH---NLCGESEKEQIRE-DILENQFMDSRMQ 110

Query: 81  LYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLD 140
           L  L  + +   +K      + + + L   +    K  + LGD+ + +D +   +L R  
Sbjct: 111 LAKLCYDPDFEKLK--PEYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIAYDVLERNQ 168

Query: 141 YYGINLSKSASPLIKYAERIFSRP---SYMES 169
            +  +   +   L  +  R        +YM+S
Sbjct: 169 VFEPSCLDAFPNLKDFISRFEGLEKISAYMKS 200

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5 Length = 206

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 14/158 (8%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
           P+GQVP+L      L +S  I  Y+ + F       + P   A     L +   +    +
Sbjct: 47  PFGQVPVLEVDGQQLAQSQAICRYLAKTF---GFAGATPFESALID-SLADAYTDYRAEM 102

Query: 82  YMLENE-RNKTSIKGYKRAREEIRDRLITLAPLFLK------NKYMLGDEFSMLDVVIAP 134
                      +    K   + +            K      + +++GD+ S +D+++A 
Sbjct: 103 KTYYYTALGFMTGDVDKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVDLLVAE 162

Query: 135 LLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
            +  +        +    +  + ERI   P    ++E+
Sbjct: 163 HVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIET 200

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A* Length = 290

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 12/129 (9%)

Query: 1   MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD----LILYESNIINEYIDERFPYPQLM 56
           + +++ +++   + +   + + Y +VPILV ++      L +S++I   +       Q +
Sbjct: 38  LPYQVVEVNPVLRAE--IKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPL 95

Query: 57  SSDPLMRARARLM------LLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITL 110
                     + +      +  F  + ++ L   E ++  +  +      +  +     L
Sbjct: 96  EEIITYYPAMKAVNDQGKEVTEFGNKYWLMLNEKEAQQVYSGKEARTEEMKWRQWADDWL 155

Query: 111 APLFLKNKY 119
             L   N Y
Sbjct: 156 VHLISPNVY 164

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens} Length = 210

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 39/206 (18%), Positives = 77/206 (37%), Gaps = 42/206 (20%)

Query: 1   MDFEIRDIDLFN----KPDNIF-RMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQ 54
           + +E + +D+           F   NP G++P+L   D   L+ESN I  ++ +     Q
Sbjct: 27  LPYEWQAVDILGGDTQTEA--FLAKNPNGKIPVLELEDGTCLWESNAILNFLADGS---Q 81

Query: 55  LMSSDPLMRARAR--LMLLNFEKE------IFIHLYMLENERNKTSIKGY----KRAREE 102
            + S+P +R +         +  E       FI LY    E  +           +A + 
Sbjct: 82  FLPSEPRLRTQVLQWQFFEQYSHEPYIAVARFIQLYEGLPEERREEYLKLHKRGYKALDV 141

Query: 103 IRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFS 162
           +  +L        +  Y++G+ +S+ D+ +       D  G +LS+    +  + +R+ S
Sbjct: 142 MEKQLS-------RTPYLVGEHYSIADIALYAYTHVADEGGFDLSRYPG-IQAWMQRVQS 193

Query: 163 RPSYMESLTPAEKIMQAGVHFGHQTR 188
            P +              +  GH   
Sbjct: 194 HPRH-----------VPMLDEGHHHH 208

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus} Length = 206

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 15/178 (8%)

Query: 2   DFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPL 61
            +E         P +   M P+GQ+P+L E    L +S  I  Y+  +F         P 
Sbjct: 28  KYEDVRYTFQEWPKHKDEM-PFGQIPVLEEDGKQLAQSFAIARYLSRKF---GFAGKTPF 83

Query: 62  MRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL------ 115
             A     + +  K+    +               ++  +E+          F+      
Sbjct: 84  EEALVD-SVADQYKDYINEIRPYLRVVAGVDQGDPEKLFKELLLPAREKFFGFMKKFLEK 142

Query: 116 -KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
            K+ Y++GD  +  D+ +A     +     ++      +  +AE++ S P+   ++E+
Sbjct: 143 SKSGYLVGDSVTYADLCLAEHTSGIAAKFPSIYDGFPEIKAHAEKVRSIPALKKWIET 200

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus} Length = 206

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 14/158 (8%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
           P+GQVP+L      L +S  I  Y+  +F             A     L +   +  + +
Sbjct: 47  PFGQVPVLEVDGKQLAQSLAICRYLARQF---GFAGKSTFDEAVV-DSLADQYSDYRVEI 102

Query: 82  YMLENE-RNKTSIKGYKRAREEIRDRLITLAPLFLK------NKYMLGDEFSMLDVVIAP 134
                           +  +E +            K      + +++GD  + +D++++ 
Sbjct: 103 KSFFYTVIGMREGDVEQLKKEVLLPARDKFFGFITKFLKKSPSGFLVGDSLTWVDLLVSE 162

Query: 135 LLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
               +  +     +    + ++ E+I + P    ++E+
Sbjct: 163 HNATMLTFVPEFLEGYPEVKEHMEKIRAIPKLKKWIET 200

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans} Length = 207

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 15/158 (9%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
           P+GQ+P L      L +S+ I  ++   F   +L        A+    L +  K+     
Sbjct: 49  PFGQLPFLEVDGKKLAQSHAIARFLAREF---KLNGKTAWEEAQV-NSLADQYKDYSSEA 104

Query: 82  YMLENERNKTSIKGYKRAREEIR-DRLITLAPLFLK------NKYMLGDEFSMLDVVIAP 134
                          +  +++I            +       + +++GD  + +D+ IA 
Sbjct: 105 RPYFYAVMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGSGFLVGDSLTWIDLAIAQ 164

Query: 135 LLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
               L   G + SK    L  +AE+I + P    ++E+
Sbjct: 165 HSADLIAKGGDFSKFPE-LKAHAEKIQAIPQIKKWIET 201

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score = 56.4 bits (137), Expect = 3e-08
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 31/133 (23%)

Query: 706 KYLEEGKVVIFAG--GIG--NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 755
           + L+EGK+ I AG  G+       TT      DTTA   AA + A++    + VDG+Y +
Sbjct: 123 EALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTA 182

Query: 756 DPNKCLSAIIYKKITFDEVISKKLE-------IMDSTAFSFCRDQKLPIRVFSIIKSGAL 808
           DP    +A   +K++F+E+    LE       I+   +  + R   +P+RV S       
Sbjct: 183 DPRIVPNAQKLEKLSFEEM----LELAAVGSKILVLRSVEYARAFNVPLRVRSSYS---- 234

Query: 809 KRVIEGKNEGTLV 821
                  + GTL+
Sbjct: 235 ------NDPGTLI 241

>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A* Length = 219

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 41/204 (20%)

Query: 1   MDFEIRDIDLFN----KPDNIF-RMNPYGQVPILVERD-LILYESNIINEYI------DE 48
           ++  ++  +L      KP+  F ++NP   +P LV+ D  +L+ES  I  Y+       +
Sbjct: 24  VELNLKLTNLMAGEHMKPE--FLKLNPQHCIPTLVDEDGFVLWESRAIQIYLVEKYGAHD 81

Query: 49  RFPYPQLMSSDPLMRAR--ARLMLLNFE--------KEIFIHLYMLENERNKTSIKGYKR 98
                +L  SDP  RA    RL    F+         E +      +         G   
Sbjct: 82  ADLAERLYPSDPRRRAVVHQRLF---FDVAVLYQRFAEYYYPQIAGQK-----VPVGDPG 133

Query: 99  AREEIRDRLITLAPLFLKNKYM-LGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYA 157
               +   L  L       +Y+  GD+ ++ D+ I   +   +  G +L +  + + ++ 
Sbjct: 134 RLRSMEQALEFLNTFLEGEQYVAGGDDPTIADLSILATIATYEVAGYDLRRYEN-VQRWY 192

Query: 158 ERIFSRPSYMESLTPAEKIMQAGV 181
           ER         ++ P       G 
Sbjct: 193 ER-------TSAIVPGADKNVEGA 209

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus} Length = 225

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 30/161 (18%), Positives = 62/161 (38%), Gaps = 25/161 (15%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
           P+G VP+L     +L ES+ I   +  RF    L+ ++    A+    ++    E+F  L
Sbjct: 71  PFGHVPMLNVSGNVLGESHAIELLLGGRF---GLLGTNDWEEAKIM-AVVLNIDELFQKL 126

Query: 82  YMLENERNKTSIKGYKRAREEIRDRLITLAPLFLK----------NKYMLGDEFSMLDVV 131
               +E+N T           + +  +     FL             +++G++ S+ D+ 
Sbjct: 127 IPWTHEKNTT---KKAELFRNLSESDV---MPFLGRYEKFLKESTTGHIVGNKVSVADLT 180

Query: 132 IAPLLWRLDYYGINLSKSASPLIKYAERIFSRP---SYMES 169
           +  +L  LD       +    L  +  +I   P    +++ 
Sbjct: 181 VFNMLMTLDDEVK--LEEYPQLASFVNKIGQMPGIKEWIKK 219

>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5 Length = 249

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 20/158 (12%), Positives = 62/158 (39%), Gaps = 17/158 (10%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
           P GQ+P+L      +++S  +  ++ +      L  + P    +   ++++   +  + +
Sbjct: 93  PMGQMPVLEVDGKRVHQSISMARFLAKTV---GLCGATPWEDLQI-DIVVDTINDFRLKI 148

Query: 82  YMLENERNKTSIKGYKRAREEIRDRLIT--LAPL--FLKNK--YMLGDEFSMLDVVIAPL 135
            ++  E      +  ++    +   +I   L  L   +K+   ++   + +  DV  A +
Sbjct: 149 AVVSYEPED---EIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVYFAGI 205

Query: 136 LWRLDY-YGINLSKSASPLIKYAERIFSRP---SYMES 169
              ++Y    +L +    L    + + +     +++E 
Sbjct: 206 TDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEK 243

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 54.1 bits (131), Expect = 2e-07
 Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 40/140 (28%)

Query: 706 KYLEEGKVVIFAG--GIGNPF---FTT------DTTA-ALRAAEIKAEIILKATKVDGIY 753
            +L EGKVV+ AG  GI +      TT      DT+A AL AA +KA+     T V GI 
Sbjct: 123 HHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVAL-AAALKADFCEIYTDVPGIL 181

Query: 754 NSDPNKCLSAIIYKKITFDEVISKKLE-------IMDSTAFSFCRDQKLPIRV---FSII 803
            +DP     A +  +IT DE+    LE       ++   A    R+  +P+ V   +S  
Sbjct: 182 TTDPRLVPEAQLMAEITCDEM----LELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-- 235

Query: 804 KSGALKRVIEGKNEGTLVYE 823
                         GT V  
Sbjct: 236 -----------DEPGTKVVA 244

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Length = 286

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 22/185 (11%), Positives = 58/185 (31%), Gaps = 14/185 (7%)

Query: 605 KGDAYNINSSIIKNIISEISEIVSCGIELAIVI-GGGNICRGISNKIQNIDRSTADYMGM 663
           K +  +++   +       + +        ++I GGG    G      +    +   +  
Sbjct: 38  KDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHDSTHAFSLAGLTE 97

Query: 664 LATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIK----YLEEGKVVIFAG- 718
               +      + L   G+ +  +   ++   L + IP    +     L+ G + + AG 
Sbjct: 98  ATFEVKKRWA-EKLRGIGVDAFPLQLAAMC-TLRNGIPQLRSEVLRDVLDHGALPVLAGD 155

Query: 719 -----GIGNPFFTTDTTAALRAAEIKAEI-ILKATKVDGIYNSDPNKCLSAIIYKKITFD 772
                      F++D    +    ++  + ++  T VDGI                 + +
Sbjct: 156 ALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPE 215

Query: 773 EVISK 777
           +  + 
Sbjct: 216 QAYAA 220

>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris} Length = 225

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 40/189 (21%)

Query: 1   MDFEIRDIDLFN----KPDNIFR-MNPYGQVPILVERD-LILYESNIINEYIDERFPYPQ 54
             +   ++D+       PD  F   NP GQVP+L       L ESN I  Y+        
Sbjct: 27  APYRAVEVDILRGESRTPD--FLAKNPSGQVPLLETAPGRYLAESNAILWYLAVGTS--- 81

Query: 55  LMSSDPLMRARA--RLML-----------LNFEKEIFIHLYMLENERNKTSIKGY----K 97
           L     + RA A   +               F    ++ L     +    +++ +     
Sbjct: 82  LAPDTRMDRAEALQWMFFEQHALEPNIGSAYF----WLCLVKGGRDLQTHALEDWLERGY 137

Query: 98  RAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYA 157
            A + + + L         N Y    + ++ D+ +       D    +LS   + +  + 
Sbjct: 138 AALQVMENHL-------KTNDYFAAGQLTIADIALYGYTHVADQCDFDLSTFPA-VNAWL 189

Query: 158 ERIFSRPSY 166
            R+   P +
Sbjct: 190 RRVEQTPGF 198

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 36/242 (14%)

Query: 605 KGDAYNINSSIIKNIISEISEIVSCGIELAIV----IGGGNICRGISNKIQNIDRSTADY 660
           K       +  I++I+  +S       +L  V       G+I           +  ++  
Sbjct: 18  KSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSS-- 71

Query: 661 MGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI----KYLEEGKV--- 713
           +G      +   L  ++  + +I   M  IS+      Y          +Y++ G V   
Sbjct: 72  IGYSIVHRDMENLDLMVIDA-MIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVS 130

Query: 714 ---VIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKIT 770
              V          ++ D   A  A  +K ++ +  T VDGIY+ DP +   A++ + I 
Sbjct: 131 YGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID 190

Query: 771 FDEVISK-----------KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 819
            +    +           K E    +        K  + + +      +  + +    GT
Sbjct: 191 TNITFDRVQNDVTGGIGKKFE----SMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGT 246

Query: 820 LV 821
           ++
Sbjct: 247 VI 248

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus} Length = 204

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 22/161 (13%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHL 81
           P+GQ+P+L      L +S  I  Y+  +              A     + +  K+    +
Sbjct: 47  PFGQLPVLEVDGKQLPQSVAIVRYLARK---FGYAGKSAWEEAVVD-SIADQFKDFLNEV 102

Query: 82  YMLENERNKTSIKGYKRAREEIRDRLITLAPLFL----------KNKYMLGDEFSMLDVV 131
                          K   +++ +        F           K  Y++GD  +  D+ 
Sbjct: 103 RPYFKVLLGMDQGDLKALEKDVFEPAR---QKFFTIVTKILKENKTGYLVGDSLTFADLY 159

Query: 132 IAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
           +A +      +   L      +  +AE++ S P    ++E+
Sbjct: 160 VAEMG--FTEHYPKLYDGFPEVKAHAEKVRSNPKLKKWIET 198

>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50} Length = 252

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 24/166 (14%), Positives = 45/166 (27%), Gaps = 21/166 (12%)

Query: 22  PYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLML-----LNFEKE 76
           P    P LV   + + ++  I  ++        L   D   R     +      L  E  
Sbjct: 70  PPFAPPYLVADGMTIAQTANILLFLGVEHG---LAPPDRAGRLWVNQLQLTIADLTAEAH 126

Query: 77  IFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF---LKN---KYMLGDEFSMLDV 130
              H                +RA +    R+      F   L            +S  D+
Sbjct: 127 DVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWSYADL 186

Query: 131 VIAPLLWRLDYYGINLSKSASP----LIKYAERIFSRP---SYMES 169
            +  ++  L +      ++       L+    R+   P    Y+ S
Sbjct: 187 SLYHVVEGLLHAFPRRMRTLVHRYPRLMALHARVAELPELRGYLAS 232

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 13/187 (6%)

Query: 598 QLGEALMKGDAYNINSSIIKNIISEISEI-VSCGIELAIVIGGGNICRGISNKIQNIDRS 656
           ++ + L   +A+  N     ++   IS+       EL I +        +   I+N   +
Sbjct: 50  KITDLLYLCNAHVKNGIPFDDVFKLISQRYTEIVSELNIDMDIAYYLEKVKKNIENG--A 107

Query: 657 TADYMGMLATIINSLALFDILNKSGI-ISHVMSAISIEKFLESYIPLNAIKYLEEGKVVI 715
           ++DY       +N + L   LN   I  + V+       F E        + +      +
Sbjct: 108 SSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAV 167

Query: 716 FAGGIG-NPFFTTDT--------TAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIY 766
             G  G +      T        T ++ +A + A++    T V G   +DP    +    
Sbjct: 168 IPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTI 227

Query: 767 KKITFDE 773
            KI++ E
Sbjct: 228 SKISYKE 234

>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A* Length = 211

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 12/165 (7%)

Query: 13  KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLN 72
           KP       P  ++         + ES  I  Y+ ++     +M             L+ 
Sbjct: 45  KPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMAKKH---HMMGGTEEEYYNVE-KLIG 100

Query: 73  FEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN---KYMLGDEFSMLD 129
             +++    Y    +  +   K  K         L+ +    LK    K  +GD+ ++ D
Sbjct: 101 QAEDLEHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLAD 160

Query: 130 VVIAPLL-WRLDYYGINLSKSASPLIKYAERIF-SRP---SYMES 169
           +V+  ++    D     L+     + K+ E +  S P    Y+  
Sbjct: 161 LVLIAVIDHVTDLDKEFLTGKYPEIHKHRENLLASSPRLAKYLSD 205

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 689 AISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFT----------TDTTAALRAAEI 738
              +E    +        ++ +  V I  G +G  + T          +D TA      +
Sbjct: 185 GDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKAL 244

Query: 739 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE 773
             + I     VDG+   DP     A     +TFDE
Sbjct: 245 GLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDE 279

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score = 45.7 bits (109), Expect = 6e-05
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 708 LEEGKVVIFAGGIG-NPFFTTDT--------TAALRAAEIKAEIILKATKVDGIYNSDPN 758
                +VI  G IG      T T        TAAL A  + A  +   T V GIY +DP 
Sbjct: 173 RLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 232

Query: 759 KCLSAIIYKKITFDE 773
              +A    +I F E
Sbjct: 233 VVSAAKRIDEIAFAE 247

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1012
d2gy9b1	218	c.23.15.1 (B:8-225) Ribosomal protein S2 {Escheric	3e-64
d2uubb1	234	c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus	2e-63
d1wqga1	183	d.67.3.1 (A:2-184) Ribosome recycling factor, RRF	4e-44
d1eh1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	3e-43
d1is1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibr	4e-43
d1vi6a_	193	c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Arch	8e-42
d1ek8a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Esch	3e-41
d1dd5a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	2e-40
d1ge9a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Aqui	1e-38
d2a1fa1	236	c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi	4e-36
d1ybda1	236	c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri	9e-35
d1z9da1	238	c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc	2e-32
d2ij9a1	219	c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog	1e-28
d1xb2b2	111	d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts),	2e-23
d1efub4	85	d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts),	1e-22
d1wiha_	84	d.67.3.1 (A:) Ribosome recycling factor, RRF {Mous	2e-19
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	3e-19
d1eema1	139	a.45.1.1 (A:103-241) Class omega GST {Human (Homo	5e-15
d1oyja1	145	a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sat	4e-14
d2cdqa1	304	c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar	5e-14
d1gwca1	138	a.45.1.1 (A:87-224) Class tau GST {Aegilops tausch	5e-14
d1efub2	143	d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),	8e-13
d1oyja2	84	c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativ	1e-11
d1xb2b1	56	a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N	2e-11
d1efub3	54	a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-t	2e-11
d1aipc1	52	a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-t	2e-11
d1f2ea1	121	a.45.1.1 (A:81-201) Class beta GST {Sphingomonas p	9e-11
d2hmfa1	302	c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja	1e-10
d1k0ma1	149	a.45.1.1 (A:92-240) Chloride intracellular channel	4e-10
d1n2aa1	121	a.45.1.1 (A:81-201) Class beta GST {Escherichia co	6e-10
d1k0da1	151	a.45.1.1 (A:201-351) Yeast prion protein ure2p, ni	7e-10
d2j0wa1	292	c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli	7e-10
d1fw1a1	125	a.45.1.1 (A:88-212) Class zeta GST {Human (Homo sa	1e-09
d1eema2	98	c.47.1.5 (A:5-102) Class omega GST {Human (Homo sa	1e-09
d1axda1	129	a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays	2e-09
d1e6ba1	133	a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cres	3e-09
d1k0ma2	86	c.47.1.5 (A:6-91) Chloride intracellular channel 1	5e-09
d1gnwa1	126	a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress	6e-09
d1tfea_	142	d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimeri	2e-08
d1tfea_	142	d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimeri	4e-05
d1e6ba2	80	c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress	2e-08
d1pmta1	121	a.45.1.1 (A:81-201) Class beta GST {Proteus mirabi	2e-08
d1aw9a1	135	a.45.1.1 (A:83-217) Class phi GST {Maize (Zea mays	2e-08
d2cvda1	124	a.45.1.1 (A:76-199) Class sigma GST {Human (Homo s	3e-08
d1fw1a2	83	c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapi	3e-08
d1nhya1	144	a.45.1.1 (A:76-219) GST-like domain of elongation	6e-08
d1aw9a2	81	c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays),	3e-07
d2gsqa1	127	a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommast	3e-07
d2a2ra1	132	a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapi	8e-07
d1r5aa2	85	c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anoph	9e-07
d2gsta1	133	a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norv	1e-06
d1axda2	80	c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays),	2e-06
d1jlva2	84	c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anoph	2e-06
d3gtub1	140	a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapi	3e-06
d1k3ya1	142	a.45.1.1 (A:81-222) Class alpha GST {Human (Homo s	3e-06
d1jlva1	123	a.45.1.1 (A:85-207) Class delta GST {Mosquito (Ano	4e-06
d1xb2b3	109	d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),	5e-06
d1gwca2	83	c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii	8e-06
d1b48a1	143	a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus mu	9e-06
d1gsua1	133	a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus	9e-06
d1n2aa2	80	c.47.1.5 (A:1-80) Class beta GST {Escherichia coli	2e-05
d1gula1	140	a.45.1.1 (A:81-220) Class alpha GST {Human (Homo s	2e-05
d2a2ra2	77	c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapien	3e-05
d2c4ja1	133	a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapi	4e-05
d1duga1	140	a.45.1.1 (A:81-220) Class alpha GST {Schistosoma j	8e-05
d1f2ea2	80	c.47.1.5 (A:1-80) Class beta GST {Sphingomonas pau	1e-04
d2fhea1	136	a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepa	1e-04
d1g7oa2	75	c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli	2e-04
d1pmta2	80	c.47.1.5 (A:1-80) Class beta GST {Proteus mirabili	4e-04
d1tu7a2	77	c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulu	4e-04
d1v2aa2	83	c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anoph	6e-04
d1b48a2	78	c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musc	0.001
d1gnwa2	84	c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (	0.001
d1tu7a1	131	a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvu	0.002
d1tw9a2	77	c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides	0.002
d1okta1	126	a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Pla	0.003
d2cvda2	74	c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sap	0.003

>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Length = 218

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Escherichia coli [TaxId: 562]

 Score =  214 bits (545), Expect = 3e-64
 Identities = 102/217 (47%), Positives = 153/217 (70%)

Query: 177 MQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLF 236
           ++AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++   KG +LF
Sbjct: 2   LKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILF 61

Query: 237 VGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKL 296
           VGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    +G+  KL
Sbjct: 62  VGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKL 121

Query: 297 SKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDT 356
           +KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  +VDT
Sbjct: 122 TKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDT 181

Query: 357 NHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 393
           N  PDG+++VIPGNDD+ +++ LY   +     + ++
Sbjct: 182 NSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS 218

>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]

 Score =  212 bits (540), Expect = 2e-63
 Identities = 97/219 (44%), Positives = 146/219 (66%)

Query: 174 EKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 233
           +++++AGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    GT
Sbjct: 2   KELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGT 61

Query: 234 LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 293
           +LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  I
Sbjct: 62  ILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEI 121

Query: 294 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 353
            +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I +
Sbjct: 122 EERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIAL 181

Query: 354 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
            DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 182 ADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  155 bits (394), Expect = 4e-44
 Identities = 64/182 (35%), Positives = 111/182 (60%)

Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            I +   + ++KM   + + +++L  +RTGRAN GM   I + Y+   T + ++A+I +  
Sbjct: 1    IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPE 60

Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
            +  + I+P+E      I+ AI  ++LG+NPT  G +I V++P LT+ERR E+VK  K+  
Sbjct: 61   ARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKG 120

Query: 949  EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            EE K+S+R IRR + E L ++ K      D   RA+ D+ K T +++ +I++L+ +KE E
Sbjct: 121  EEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGE 180

Query: 1009 IL 1010
            +L
Sbjct: 181  LL 182

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

 Score =  153 bits (387), Expect = 3e-43
 Identities = 72/184 (39%), Positives = 126/184 (68%)

Query: 827  MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 886
            M + ++   T+  M  ++++L+ NL  +RTGRAN  +L +++V+Y+     L +IA +T 
Sbjct: 1    MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60

Query: 887  FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 946
             +  T+ +Q +++     I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++ 
Sbjct: 61   PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120

Query: 947  ITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 1006
              EE +++IR IRR++ + LKKL K   LS D   RA+ +IQK+TD+FI + +QL   KE
Sbjct: 121  YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180

Query: 1007 KEIL 1010
            +EIL
Sbjct: 181  QEIL 184

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

 Score =  153 bits (387), Expect = 4e-43
 Identities = 79/183 (43%), Positives = 132/183 (72%)

Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            I++IKK+ +++M  +++ LK NL KVRTGRA+  +L  I V+Y+   T L ++AN+   +
Sbjct: 2    INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAED 61

Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
            + T++I  F+KE++  ++KAI  ++LGLNP   G II V +PPLT+ERR+++VK+++   
Sbjct: 62   ARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEA 121

Query: 949  EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            E  ++++R IRRD+N +LK LLK+K +S D + +AQ +IQKLTD  + +I+++L  KEKE
Sbjct: 122  EGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 181

Query: 1009 ILT 1011
            ++ 
Sbjct: 182  LME 184

>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  149 bits (377), Expect = 8e-42
 Identities = 44/226 (19%), Positives = 89/226 (39%), Gaps = 51/226 (22%)

Query: 168 ESLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQ 226
           E L P +  + AGVH G Q +  +  M  +IF  R + ++++++ K       A +++ +
Sbjct: 3   EYLVPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR 60

Query: 227 LGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDL 286
             +    +L V  ++ A   +   +   G  +I  R++ G LTN                
Sbjct: 61  --YEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNP--------------- 103

Query: 287 FITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKL 346
                                          + +    P+ +F+ D    K AVSEA  +
Sbjct: 104 -------------------------------MLSEYREPEVVFVNDPAIDKQAVSEATAV 132

Query: 347 NIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 392
            IP++ + D+N+S   ++ VIP N+   +++A+    +       +
Sbjct: 133 GIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIR 178

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

 Score =  147 bits (372), Expect = 3e-41
 Identities = 74/183 (40%), Positives = 128/183 (69%)

Query: 828  IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 887
            +ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ 
Sbjct: 1    MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60

Query: 888  NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 947
            +S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++  
Sbjct: 61   DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120

Query: 948  TEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 1007
             E+ ++++R +RRD+N+ +K LLK+K +S D++ R+Q D+QKLTD  I +I   L +KE 
Sbjct: 121  AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180

Query: 1008 EIL 1010
            E++
Sbjct: 181  ELM 183

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

 Score =  144 bits (365), Expect = 2e-40
 Identities = 68/182 (37%), Positives = 121/182 (66%)

Query: 829  ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 888
            ++   K  K+KM  T++ +++ L+K+RTG+ +  +L+ I+V Y+   T + ++A I++  
Sbjct: 1    VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISE 60

Query: 889  SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 948
              T+ I+P++K + S+I+KAIN ++LGLNP   GN+I +  P  T E+RE+ VK  K I 
Sbjct: 61   ERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIV 120

Query: 949  EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 1008
            EE KI+IR IRR+  + +K+  K  ++  D+  R + +IQKLTD+FI +++++   K++E
Sbjct: 121  EEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEE 180

Query: 1009 IL 1010
            I+
Sbjct: 181  IM 182

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

 Score =  140 bits (353), Expect = 1e-38
 Identities = 71/186 (38%), Positives = 121/186 (65%), Gaps = 4/186 (2%)

Query: 826  IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANIT 885
            I  + DI K  ++ M   ++  K  +  +RT RA+  +++ I+V+Y+     + ++  I+
Sbjct: 2    IKELEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTIS 61

Query: 886  LFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIK 945
            +   + I IQ +++     I+KAI E  L LNPT+QGN+I V++PPLT+ERR E+V+L+ 
Sbjct: 62   VPEHNQIVIQVWDQNAVPAIEKAIRE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLH 120

Query: 946  NITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 1005
             ITEE ++ +R +RR++ E +++L   + +S D + RA   +QKLTDK+I EIN+L+  K
Sbjct: 121  KITEEARVRVRNVRREAKEMIEEL---EGISEDEKKRALERLQKLTDKYIDEINKLMEAK 177

Query: 1006 EKEILT 1011
            EKEI++
Sbjct: 178  EKEIMS 183

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score =  134 bits (338), Expect = 4e-36
 Identities = 102/222 (45%), Positives = 152/222 (68%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL   D   I+ +I+  +  EI E+V  G+E+++V+GGGN+ RG       ++R   D
Sbjct: 14  GEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGD 73

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           +MGMLAT++N LA+ D L ++ + + +MSA  +    ++Y    AIK L E +VVIF+ G
Sbjct: 74  HMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAG 133

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
            GNPFFTTD+TA LR  EI+A+++LKATKVDG+Y+ DP K   A +YK +++ EVI K+L
Sbjct: 134 TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKEL 193

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           ++MD +AF+  RD  +PIRVF++ K GAL++V+ G  EGT +
Sbjct: 194 KVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

 Score =  130 bits (328), Expect = 9e-35
 Identities = 123/223 (55%), Positives = 166/223 (74%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GE+LM  D + IN   I   + EI+E+V  G+++ IV+GGGNI RG+S +  ++DR+TAD
Sbjct: 13  GESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATAD 72

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           YMGM+AT++N+LAL D     GI + V SA+S+++  E+Y    AI+YLEEGKVVIFA G
Sbjct: 73  YMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAG 132

Query: 720 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 779
            GNPFFTTDT AALR AE+  +++LKAT VDG+Y +DP K  SA  Y+ ITFDE + K L
Sbjct: 133 TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNL 192

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822
           ++MD+TAF+ CR++KL I VF I K G+LKRVI G++EGTLV+
Sbjct: 193 KVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 235

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  123 bits (310), Expect = 2e-32
 Identities = 84/223 (37%), Positives = 138/223 (61%), Gaps = 1/223 (0%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 659
           GEAL       I+   ++ I  EI+E+   G+++A+VIGGGN+ RG       +DR  AD
Sbjct: 13  GEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQAD 72

Query: 660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 719
           Y GML T++N+L + D L   G+ + V +AI ++   E YI   A+++LE+ ++V+F  G
Sbjct: 73  YTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAG 132

Query: 720 IGNPFFTTD-TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 778
           IG+P+F+TD T A   A      I++    VDG+YN+DP K  +A+ + ++T  EVI + 
Sbjct: 133 IGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRG 192

Query: 779 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           L+IMD+TA +   D  + + VF++ ++G ++RV+ G++ GT V
Sbjct: 193 LKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTV 235

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  112 bits (280), Expect = 1e-28
 Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 36/240 (15%)

Query: 593 VLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KI 650
           VL    LG +++  +     S  I+     I  +     ++ +V+GGG + R      + 
Sbjct: 4   VLS---LGGSVLSNE-----SEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARE 54

Query: 651 QNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEE 710
                +  DY+G+ AT +N++ L   +  +     V               + A +  + 
Sbjct: 55  LGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVD-------------FMEAEELSKL 101

Query: 711 GKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKIT 770
            +VV+  G    P  TTD TAAL A  IKA++ + AT VDG+Y++DP    SA+ Y +++
Sbjct: 102 YRVVVMGGT--FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLS 159

Query: 771 FDEVISKKLE---------IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
             +++              ++D  A       K+   V        + + ++G+  GT++
Sbjct: 160 PQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218

>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 111

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 93.6 bits (232), Expect = 2e-23
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 14/107 (13%)

Query: 440 RNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNL 499
           R  K+G+I +        LVE+NCETDFV++N +F +  +++A     +     DQL+  
Sbjct: 2   RKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTY 61

Query: 500 K--------------IKNNLLTVDEKCKELISRIGENIKIRRFKLFK 532
                                ++ ++    I ++GEN+ ++R    K
Sbjct: 62  SKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVK 108

>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Escherichia coli [TaxId: 562]

 Score = 90.7 bits (225), Expect = 1e-22
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 442 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKI 501
           A DGVI   I    G ++E+NC+TDFVAK+  F  F+ K+          +++ L     
Sbjct: 2   AADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKA--- 58

Query: 502 KNNLLTVDEKCKELISRIGENIKIRRFKLF 531
                  +E+   L+++IGENI IRR    
Sbjct: 59  -----QFEEERVALVAKIGENINIRRVAAL 83

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 84

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

 Score = 81.4 bits (201), Expect = 2e-19
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 857 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLG 915
           G +    LD+I V   +    L +I  I++ +   I +      E ++   KAI E+ + 
Sbjct: 1   GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 916 LNPTIQGNIIYVSIPPLTKERRE 938
           LNP ++G +I V IP +T     
Sbjct: 61  LNPEVEGTLIRVPIPKVTSGPSS 83

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 85.5 bits (210), Expect = 3e-19
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 29/234 (12%)

Query: 600 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRST 657
           G  L+     N +   IK I  +++++     E+A+V+GGG + R      +  N   + 
Sbjct: 9   GSVLVPE---NPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETF 64

Query: 658 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 717
            D++G+  T  N++ L   L +      V       K ++                 I  
Sbjct: 65  KDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLK--------------KIPV 110

Query: 718 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS- 776
            G  +P  TTD  AAL A  +KA++++  T VDG+Y +DP K  +A   KK+  +E++  
Sbjct: 111 MGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEI 170

Query: 777 --------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 822
                       ++D  A        +   V     +  L RVI+G + GT + 
Sbjct: 171 VGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 224

>d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens) [TaxId: 9606]} Length = 139

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 5e-15
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 56  MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL 115
           +  DP  +A  +++L  F K   +    + ++  +     Y   +EE R     L  +  
Sbjct: 1   LPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKED----YAGLKEEFRKEFTKLEEVLT 56

Query: 116 KN--KYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRPSYMESLTP 172
                +  G+  SM+D +I P   RL+   +N     +P L  +   +   P+    LT 
Sbjct: 57  NKKTTFFGGNSISMIDYLIWPWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTS 116

Query: 173 AEKIMQ 178
            +    
Sbjct: 117 EKDWQG 122

>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} Length = 145

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 68.2 bits (166), Expect = 4e-14
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 11/135 (8%)

Query: 51  PYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITL 110
           P     +     RA AR      +++++     L     +   +    A  E+ + L TL
Sbjct: 4   PANSGDADAAYARATARFWADYVDRKLYDCGSRL----WRLKGEPQAAAGREMAEILRTL 59

Query: 111 APLFLKNKYMLG---DEFSMLDVVIAPLLWRL----DYYGINLSKSASPLIKYAERIFSR 163
                  ++  G        +DV + P            G ++ + A  L  +A R    
Sbjct: 60  EAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRI 119

Query: 164 PSYMESLTPAEKIMQ 178
            S ++ L   EK+  
Sbjct: 120 DSVVKHLPSPEKVYD 134

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 71.8 bits (175), Expect = 5e-14
 Identities = 33/227 (14%), Positives = 74/227 (32%), Gaps = 29/227 (12%)

Query: 615 IIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI------- 667
            +K +  + S I++   EL  ++ G  + + ++ + ++   S  + +             
Sbjct: 80  TVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIG 139

Query: 668 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGN----- 722
           + +                 +   +E    +        ++ +  V I  G +G      
Sbjct: 140 VKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTG 199

Query: 723 -----PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-- 775
                    +D TA      +  + I     VDG+   DP     A     +TFDE    
Sbjct: 200 AVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAEL 259

Query: 776 -SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
                +++   +    R+ ++P+RV +             K  GT++
Sbjct: 260 AYFGAQVLHPQSMRPAREGEIPVRVKNS---------YNPKAPGTII 297

>d1gwca1 a.45.1.1 (A:87-224) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]} Length = 138

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

 Score = 68.0 bits (165), Expect = 5e-14
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSI-KGYKRAREEIRDRLITLAPL 113
           L+ +DP  RA AR  +   + ++          + +    +G K+A   +      L   
Sbjct: 1   LLPADPYERAIARFWVAYVDDKLVAPWRQWLRGKTEEEKSEGKKQAFAAVGVLEGALREC 60

Query: 114 FLKNKYMLGDEFSMLDVVIAPLLWRLDYYG------INLSKSASPLIKYAERIFSRPSYM 167
                +  GD   ++DV +  +L  +          I  +     L  + ER     +  
Sbjct: 61  SKGGGFFGGDGVGLVDVALGGVLSWMKVTEALSGDKIFDAAKTPLLAAWVERFIELDAAK 120

Query: 168 ESLTPAEKIMQ 178
            +L    ++++
Sbjct: 121 AALPDVGRLLE 131

>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Escherichia coli [TaxId: 562]

 Score = 64.6 bits (157), Expect = 8e-13
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 539 SYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQ 598
           SY H  +IGV+V   G +E  VK +AMH+AA KP  +  + +  +++EKEY + +  A Q
Sbjct: 5   SYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQ 64

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]} Length = 84

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 59.3 bits (143), Expect = 1e-11
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 1  MDFEIRDIDLFNKPDNIFRMNP-YGQVPILVERDLILYESNIINEYIDERFPYP 53
          ++FE R+ DL NK D + R NP + ++P+L+     + ES +I +Y+D+ FP  
Sbjct: 29 LEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGT 82

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 56

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 440
             + + +LR KT    + CKKAL    G L +AE  L  +  K+  + + R
Sbjct: 4   SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAAR 54

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 54

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 387 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKK 433
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R     K
Sbjct: 1   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIK 47

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 52

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 440
             + + +LR  T A +M+ K+AL +A     KA ++LR +   K    ++R
Sbjct: 2   QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADR 52

>d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]} Length = 121

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

 Score = 58.1 bits (140), Expect = 9e-11
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 59  DPLMRARARLMLLNFEKEI---FIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL 115
             L R R    L     E    F+ L+        TS +    A E +++ L  L     
Sbjct: 7   GSLDRYRLLSRLSFLGSEFHKAFVPLF-----APATSDEAKAAAAESVKNHLAALDKELA 61

Query: 116 KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
              +  G+ FS+ D+ +  +L    Y GI+++   + L  YA +I  RP+   +L 
Sbjct: 62  GRDHYAGNAFSVADIYLYVMLGWPAYVGIDMAAYPA-LGAYAGKIAQRPAVGAALK 116

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 61.8 bits (149), Expect = 1e-10
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 21/129 (16%)

Query: 705 IKYLEEGKVVIFAGGIGN---------PFFTTDTTAALRAAEIKAEIILKATKVDGIYNS 755
           +  L+EG + +  G IG              +D +AAL    + A+II   T V G+Y +
Sbjct: 178 LPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTT 237

Query: 756 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 812
           DP    +A    K+++ E +       +++         ++ +PI V +           
Sbjct: 238 DPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNT---------F 288

Query: 813 EGKNEGTLV 821
           E ++EGTL+
Sbjct: 289 EPESEGTLI 297

>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 4e-10
 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 12/140 (8%)

Query: 52  YPQLMSSDPLMRARAR-------LMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIR 104
           YP+L + +P                + N    +  +L     +  K           E  
Sbjct: 2   YPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEGV 61

Query: 105 DRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGI-----NLSKSASPLIKYAER 159
           D          + K++ G+E ++ D  + P L  +           + ++   + +Y   
Sbjct: 62  DETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSN 121

Query: 160 IFSRPSYMESLTPAEKIMQA 179
            ++R  +  +    E+I  A
Sbjct: 122 AYAREEFASTCPDDEEIELA 141

>d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli [TaxId: 562]} Length = 121

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

 Score = 55.8 bits (134), Expect = 6e-10
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 7/118 (5%)

Query: 55  LMSSDPLMRARAR--LMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAP 112
           L   + + R +    L  +  E    +H       R  T  +     R ++  +L  +  
Sbjct: 3   LAPVNSISRYKTIEWLNYIATE----LHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNE 58

Query: 113 LFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
                 ++ G  F++ D  +  +L       +NL      +  + +R+  RP   ++L
Sbjct: 59  ALKDEHWICGQRFTIADAYLFTVLRWAYAVKLNLEGLEH-IAAFMQRMAERPEVQDAL 115

>d1k0da1 a.45.1.1 (A:201-351) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 151

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (135), Expect = 7e-10
 Identities = 14/74 (18%), Positives = 34/74 (45%)

Query: 97  KRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKY 156
             A        ++ +  F    +++GD+ ++ D+   P    +D  GIN+      + K+
Sbjct: 78  NAAAYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVVDRIGINIKIEFPEVYKW 137

Query: 157 AERIFSRPSYMESL 170
            + +  RP+ +++L
Sbjct: 138 TKHMMRRPAVIKAL 151

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 59.1 bits (142), Expect = 7e-10
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 723 PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI---SKKL 779
               +D TAAL A  + A  +   T V GIY +DP    +A    +I F E     +   
Sbjct: 195 GRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGA 254

Query: 780 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 821
           +++            +P+ V S           + +  GTLV
Sbjct: 255 KVLHPATLLPAVRSDIPVFVGSS---------KDPRAGGTLV 287

>d1fw1a1 a.45.1.1 (A:88-212) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL- 113
           L+  DP  RA  R M+ +        L  L   +          A+  I      L  + 
Sbjct: 1   LLPQDPKKRASVR-MISDLIAGGIQPLQNLSVLKQVGEEMQLTWAQNAITCGFNALEQIL 59

Query: 114 -FLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
                 Y +GDE +M D+ + P +   + + ++L+   + +    +R+    ++  S 
Sbjct: 60  QSTAGIYCVGDEVTMADLCLVPQVANAERFKVDLTPYPT-ISSINKRLLVLEAFQVSH 116

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 1  MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFPYPQL 55
          +  E+ +I+L NKP+  F+ NP+G VP+L      ++YES I  EY+DE +P  +L
Sbjct: 43 IRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKL 98

>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]} Length = 129

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 10/126 (7%)

Query: 54  QLMSSDPLMRARARLMLLNFE--------KEIFIHLYMLENERNKTSIKGYKRAREEIRD 105
            L   +    A    + +  E          I   + +       T  K      E+++ 
Sbjct: 2   LLREGNLEEAAMVD-VWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKK 60

Query: 106 RLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP-LIKYAERIFSRP 164
            L        K KY+ GD  S+ D+    +   L          A P +  +   +  RP
Sbjct: 61  VLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFATPYASVLDAYPHVKAWWSGLMERP 120

Query: 165 SYMESL 170
           S  +  
Sbjct: 121 SVQKVA 126

>d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 133

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.1 bits (129), Expect = 3e-09
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 5/121 (4%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRA---REEIRDRLITLA 111
           L+  D   RA     +      I  H  +      +  I   ++       I      L 
Sbjct: 2   LLPRDLHKRAVNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALE 61

Query: 112 PLF--LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMES 169
            L      K+  GDE  + D+ +AP +           +    L K  E     P++  +
Sbjct: 62  KLLVNCAGKHATGDEIYLADLFLAPQIHGAINRFQINMEPYPTLAKCYESYNELPAFQNA 121

Query: 170 L 170
           L
Sbjct: 122 L 122

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 5e-09
 Identities = 10/53 (18%), Positives = 27/53 (50%)

Query: 1  MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53
          + F +  +D   + + + ++ P G++P L+    +  ++N I E+++     P
Sbjct: 34 VTFNVTTVDTKRRTETVQKLCPGGELPFLLYGTEVHTDTNKIEEFLEAVLCPP 86

>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 126

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.7 bits (126), Expect = 6e-09
 Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 77  IFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLL 136
           +             T          ++   L        + KY+ G+ F++ D+   P +
Sbjct: 32  LAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAI 91

Query: 137 WRLDYYGINLSKSASPLIK-YAERIFSRPSY 166
             L         +  P +  +   I  RP+ 
Sbjct: 92  QYLLGTPTKKLFTERPRVNEWVAEITKRPAS 122

>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Length = 142

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Thermus thermophilus [TaxId: 274]

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 48/139 (34%)

Query: 442 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP-------IN 492
           A++G+I  YI  +++VG LVE+NCETDFVA+N  F   +K +A  I    P       I 
Sbjct: 1   AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIP 60

Query: 493 LDQLNNLK---------------------------------------IKNNLLTVDEKCK 513
            ++L   +                                       +K++ + V E  +
Sbjct: 61  AEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQ 120

Query: 514 ELISRIGENIKIRRFKLFK 532
           + I++IGENI +RRF  F+
Sbjct: 121 QAIAKIGENIVVRRFCRFE 139

>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Length = 142

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 10/74 (13%)

Query: 539 SYLH-DNKIGVIVEYNGDNESA---------VKDVAMHIAAMKPIALSSDQIPKKIIEKE 588
            Y+H + ++GV+VE N + +            KD+AMHIA M P  +S+++IP + +EKE
Sbjct: 8   HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKE 67

Query: 589 YSLAVLKAQQLGEA 602
             + +  A   G+ 
Sbjct: 68  RQIYIQAALNEGKP 81

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 1  MDFEIRDIDLFNKPDN---IFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53
          +D+E   ++L           ++NP G VP LV+ D+++ +S  I  Y+DE++P P
Sbjct: 25 LDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYLDEKYPEP 80

>d1pmta1 a.45.1.1 (A:81-201) Class beta GST {Proteus mirabilis [TaxId: 584]} Length = 121

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 55  LMSSDPLMRARAR--LMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAP 112
           +     L R      L  L  E    +H        + T        + +++ + + +  
Sbjct: 3   IAPPKALERYHQIEWLNFLASE----VHKGYSPLFSSDTPESYLPVVKNKLKSKFVYIND 58

Query: 113 LFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL 170
           +  K K + GD F++ D  +  L     +  ++L+  +  L  Y  RI  RP+   +L
Sbjct: 59  VLSKQKCVCGDHFTVADAYLFTLSQWAPHVALDLTDLSH-LQDYLARIAQRPNVHSAL 115

>d1aw9a1 a.45.1.1 (A:83-217) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]} Length = 135

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 53  PQLMSSDPLMRARARL-MLLNFEK--------EIFIHLYMLENERNKTSIKGYKRAREEI 103
             L+ +     + A+L + L  E          +   L +              +  E++
Sbjct: 2   TDLLPATA---SAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHAEQL 58

Query: 104 RDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIK-YAERIFS 162
              L        +NKY+ GDEF++ D   A  L  L         +A P +K + E I +
Sbjct: 59  AKVLDVYEAHLARNKYLAGDEFTLADANHASYLLYLSKTPKAGLVAARPHVKAWWEAIVA 118

Query: 163 RPSYMESL 170
           RP++ +++
Sbjct: 119 RPAFQKTV 126

>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 9/118 (7%), Positives = 38/118 (32%), Gaps = 4/118 (3%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           L  +  + +      +++   +        E +++       +         +  L    
Sbjct: 2   LAGNTEMEQCHVD-AIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYL 60

Query: 115 LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
              ++++G   +  D         L  +  +L  +   L+   +++ + P+   +++ 
Sbjct: 61  GGREWLIGMSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIKR 118

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 3  FEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53
            +          +   +NP  QVP L    + +++S  I EY++E  P P
Sbjct: 32 INLIKDGGQQFSKDFQALNPMKQVPTLKIDGITIHQSLAIIEYLEETRPTP 82

>d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 144

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (120), Expect = 6e-08
 Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 11/142 (7%)

Query: 47  DERFPYPQLMSSDPLMRARAR-LMLLNFEKEIFIH----LYMLENERNKTSIKGYKRARE 101
           D++    QL+ +D  + A+A+ +   +              +        + K    A +
Sbjct: 1   DDKMK-TQLLGADDDLNAQAQIIRWQSLANSDLCIQIANTIVPLKGGAPYNKKSVDSAMD 59

Query: 102 EIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASP--LIKYAER 159
            +   +           Y+  +  S+ D+V A +  R           A    ++++   
Sbjct: 60  AVDKIVDIFENRLKNYTYLATENISLADLVAASIFTRYFESLFGTEWRAQHPAIVRWFNT 119

Query: 160 IFSRPSY---MESLTPAEKIMQ 178
           + + P      +    A+K + 
Sbjct: 120 VRASPFLKDEYKDFKFADKPLS 141

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]} Length = 81

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 1  MDFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP 51
          +DFEI  +DL    +K  +   +NP+GQ+P LV+ D +L+ES  IN YI  ++ 
Sbjct: 26 LDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYIASKYA 79

>d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]} Length = 127

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 8/122 (6%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           L     L + R    +    ++IF  +  ++           +   +  +     L  L 
Sbjct: 1   LDGKTSLEKYRVD-EITETLQDIFNDVVKIKFAPEAAKEAVQQNYEKSCKRLAPFLEGLL 59

Query: 115 LKN----KYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YM 167
           + N     + +G+  ++ D+     L     +   L K    ++   +R+   P    Y+
Sbjct: 60  VSNGGGDGFFVGNSMTLADLHCYVALEVPLKHTPELLKDCPKIVALRKRVAECPKIAAYL 119

Query: 168 ES 169
           + 
Sbjct: 120 KK 121

>d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} Length = 132

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 8e-07
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGY-KRAREEIRDRLITLAPL 113
           L   D    A    M+ +  +++      L     +     Y K    +++     L+  
Sbjct: 1   LYGKDQQEAALVD-MVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQN 59

Query: 114 FLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
                +++GD+ S  D  +  LL   +        +   L  Y  R+ +RP    ++ S
Sbjct: 60  QGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLAS 118

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 9/53 (16%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 2  DFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP 51
          + +++ +++        +   +NP   +P + +  L+L+ES +I  Y+   + 
Sbjct: 26 ELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSYLVSAYG 78

>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class mu GST
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           L       R RA  ++ N   +  + L ML    +    K      + I +++   +   
Sbjct: 1   LCGETEEERIRAD-IVENQVMDNRMQLIMLCYNPDFE--KQKPEFLKTIPEKMKLYSEFL 57

Query: 115 LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
            K  +  GD+ + +D +   +L +   +      +   L  +  R         YM+S
Sbjct: 58  GKRPWFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKS 115

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]} Length = 80

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 2  DFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50
          D+EI  I+     +K       NP+GQVP L + DL L+ES  I +Y   + 
Sbjct: 27 DYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYAARKN 78

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]} Length = 84

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2  DFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP 53
          +  ++  +L    +      ++NP   +P LV+    L+ES  I  Y+ E++   
Sbjct: 25 ELNLKLTNLMAGEHMKPEFLKINPQHCIPTLVDNGFALWESRAICTYLAEKYGKD 79

>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 16/118 (13%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           +       + R   ++ N   +    L  L    +   +K   +  EE+  +L   +   
Sbjct: 5   MCGETEEEKIRVD-IIENQVMDFRTQLIRLCYSSDHEKLK--PQYLEELPGQLKQFSMFL 61

Query: 115 LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
            K  +  G++ + +D +   +L +   +          L  +  R  +      Y++S
Sbjct: 62  GKFSWFAGEKLTFVDFLTYDILDQNRIFDPKCLDEFPNLKAFMCRFEALEKIAAYLQS 119

>d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} Length = 142

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           L   D   RA    M +    ++   + +L     +         +E+I++R        
Sbjct: 1   LYGKDIKERALID-MYIEGIADLGEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKV 59

Query: 115 LK---NKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
           LK     Y++G++ S  D+ +  LL+ ++    +L  S   L     RI + P+  + L 
Sbjct: 60  LKSHGQDYLVGNKLSRADIHLVELLYYVEELDSSLISSFPLLKALKTRISNLPTVKKFLQ 119

Query: 172 PAEK 175
           P   
Sbjct: 120 PGSP 123

>d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]} Length = 123

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 1/110 (0%)

Query: 59  DPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNK 118
           DP  RA     L      ++         +            ++++D +  L      +K
Sbjct: 2   DPQKRAVVNQRLYFDMGTLYQRFADYYYPQIFAKQPANAENEKKMKDAVDFLNTFLDGHK 61

Query: 119 YMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYME 168
           Y+ GD  ++ D+ +   +   D  G  L+K    +  + ER         
Sbjct: 62  YVAGDSLTIADLTVLATVSTYDVAGFELAKYPH-VAAWYERTRKEAPGAA 110

>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 109

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 18/70 (25%)

Query: 539 SYLHDN------------KIGVIVEYNGDNESA-----VKDVAMHIAAMKPIALSSDQIP 581
           SY+H              K G +V        A      + +  H+  M P+++ S    
Sbjct: 6   SYVHGAMHSPSLHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDE 65

Query: 582 KKIIEKEYSL 591
               E E  +
Sbjct: 66  PG-GEAETKM 74

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]} Length = 83

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

 Score = 42.8 bits (100), Expect = 8e-06
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 1  MDFEIRDIDLFNKPDNIFRMNPYGQ-VPILVERDLILYESNIINEYIDERFP 51
          + +E  + DL+ K + + + NP  + +P+L+     + ES II +YIDE F 
Sbjct: 27 LSYEDVEEDLYKKSELLLKSNPVHKKIPVLIHNGAPVCESMIILQYIDEVFA 78

>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]} Length = 143

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

 Score = 44.3 bits (104), Expect = 9e-06
 Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           L   D   R R   M  +  +++ + + +   +  K   + Y       + R   +    
Sbjct: 2   LYGKDLKERVRID-MYADGTQDLMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKI 60

Query: 115 LKN---KYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
           LK+    +++G++ S  D+ +   +  ++     +      L  +  RI + P+  + L 
Sbjct: 61  LKDHGEAFLVGNQLSWADIQLLEAILMVEELSAPVLSDFPLLQAFKTRISNIPTIKKFLQ 120

Query: 172 PAEK 175
           P  +
Sbjct: 121 PGSQ 124

>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]} Length = 133

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class mu GST
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (103), Expect = 9e-06
 Identities = 17/118 (14%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           +     + + R   +L N   ++ +    L    +   +K      E++  +L  L+   
Sbjct: 1   MCGETEVEKQRVD-VLENHLMDLRMAFARLCYSPDFEKLK--PAYLEQLPGKLRQLSRFL 57

Query: 115 LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
               + +GD+ + +D +   +L +   +  +  +    L ++ +R  +      YM S
Sbjct: 58  GSRSWFVGDKLTFVDFLAYDVLDQQRMFVPDCPELQGNLSQFLQRFEALEKISAYMRS 115

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]} Length = 80

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 2  DFEIRDIDLFNKPDN----IFRMNPYGQVPILVERD-LILYESNIINEYIDERFP 51
          DF +  +DL  K        F +NP GQVP L+  D  +L E   I +Y+ +  P
Sbjct: 24 DFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVP 78

>d1gula1 a.45.1.1 (A:81-220) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]} Length = 140

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           L   +   R     M +    ++   L M    +     K      ++   R   +    
Sbjct: 1   LFGKNLKERTLID-MYVEGTLDLLELLIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKI 59

Query: 115 LKN---KYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT 171
           L+     +++G++ S+ DV++   +  L+    N+  +   L +Y  ++ + P+    L 
Sbjct: 60  LRGHGQSFLVGNQLSLADVILLQTILALEEKIPNILSAFPFLQEYTVKLSNIPTIKRFLE 119

Query: 172 PAEK 175
           P  K
Sbjct: 120 PGSK 123

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 1  MDFEIRDIDLFNK-PDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50
            ++   + +      ++     YGQ+P   + DL LY+SN I  ++    
Sbjct: 26 QSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTL 76

>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 55  LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF 114
           L       + R   +L N   +  + L  L  + +   +K      + + + L   +   
Sbjct: 1   LCGESEKEQIRED-ILENQFMDSRMQLAKLCYDPDFEKLK--PEYLQALPEMLKLYSQFL 57

Query: 115 LKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
            K  + LGD+ + +D +   +L R   +  +   +   L  +  R         YM+S
Sbjct: 58  GKQPWFLGDKITFVDFIAYDVLERNQVFEPSCLDAFPNLKDFISRFEGLEKISAYMKS 115

>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum [TaxId: 6182]} Length = 140

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 56  MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL 115
           +   P  RA    ML     +I   +  +   ++  ++K       ++ + L        
Sbjct: 1   LGGCPKERAEIS-MLEGAVLDIRYGVSRIAYSKDFETLK--VDFLSKLPEMLKMFEDRLC 57

Query: 116 KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
              Y+ GD  +  D ++   L  + Y       +   L+ + +RI + P    Y++S
Sbjct: 58  HKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKS 114

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]} Length = 80

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 2  DFEIRDIDLFNK----PDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERFP 51
          DFE   +DL  +     ++   +NP G+VP L       L E+  I  YI ++ P
Sbjct: 24 DFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIADQNP 78

>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]} Length = 136

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 56  MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL 115
           + +    RAR   M+     ++   +  +  +     +K  +   +++   +   +    
Sbjct: 1   IGTTSEERARVS-MIEGAAVDLRQGISRISYQPKFEQLK--EGYLKDLPTTMKMWSDFLG 57

Query: 116 KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
           KN Y+ G   S +D ++   L  + Y   +       L ++  RI + PS   YMES
Sbjct: 58  KNPYLRGTSVSHVDFMVYEALDAIRYLEPHCLDHFPNLQQFMSRIEALPSIKAYMES 114

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]} Length = 75

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 11 FNKPDNIFRMNPYGQVPILVERD-LILYESNIINEYIDERF 50
           +  +   RM    QVPIL + D   + ES  I  Y+D+  
Sbjct: 33 NDDAETPTRMVGQKQVPILQKDDSRYMPESMDIVHYVDKLD 73

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]} Length = 80

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 2  DFEIRDIDLFNKPDN----IFRMNPYGQVPILVERD-LILYESNIINEYIDERFP 51
          DF I  IDL  K          +NP GQVP+L   +  IL E   I +Y+ +  P
Sbjct: 24 DFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLKP 78

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]} Length = 77

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 11 FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF 50
           +   +I     +GQ+P L + D  + +S  I  ++  ++
Sbjct: 35 KDDFSSIKSQFQFGQLPCLYDGDQQIVQSGAILRHLARKY 74

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]} Length = 83

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 1  MDFEIRDIDLFNKPDN--IFRMNPYGQVPILVERDLILYESNIINEYIDERFP 51
          +   ++  ++ +  +   + ++NP   +P LV+   +++ES  I  Y+ E + 
Sbjct: 24 ITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLYLVETYA 76

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 9/51 (17%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 2  DFEIRDIDLFNKPDNIFRM--NPYGQVPILVERDLILYESNIINEYIDERF 50
          +FE   ++   + + + +     +GQVP++    ++L ++  I  Y+  ++
Sbjct: 28 EFEEEFLETREQYEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSYLAAKY 78

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 84

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 2  DFEIRDIDLF---NKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP 51
          DFE+  ++L    +K +     NP+GQVP   + DL L+ES  I +YI  R+ 
Sbjct: 26 DFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYE 78

>d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus [TaxId: 6282]} Length = 131

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 10/119 (8%)

Query: 58  SDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKN 117
            + +       M     +++ +    +     +T        +  +   L     L    
Sbjct: 2   ENEMETTYID-MFCEGVRDLHVKYTRMIYMAYETEKD--PYIKSILPGELAKFEKLLATR 58

Query: 118 ----KYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
                 +LGD+ S  D  +   L        +       L  + +R+  RP    Y E 
Sbjct: 59  GNGRNLILGDKISYADYALFEELDVHQILDPHCLDKFPLLKVFHQRMKDRPKLKEYCEK 117

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]} Length = 77

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 2  DFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY 52
           +E   +        +    P+GQVP+L      L +S  I  Y+ + F +
Sbjct: 28 KYEDVRLT-QETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFGF 77

>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 126

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 116 KNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPS---YMES 169
              Y +G+  +  D+ +  L   ++    +  K+   L  + E I + P+   Y+ +
Sbjct: 64  DKYYFVGNNLTYADLAVFNLYDDIETKYPSSLKNFPLLKAHNEFISNLPNIKNYITN 120

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 11 FNKPDNIFRMNPYGQVPILVERDLILYESNIINEYI 46
                I    P+G++PIL    L L++S  I  Y+
Sbjct: 35 QADWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYL 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1012
d2uubb1	234	Ribosomal protein S2 {Thermus thermophilus [TaxId:	100.0
d2gy9b1	218	Ribosomal protein S2 {Escherichia coli [TaxId: 562	100.0
d1is1a_	185	Ribosome recycling factor, RRF {Vibrio parahaemoly	100.0
d1wqga1	183	Ribosome recycling factor, RRF {Mycobacterium tube	100.0
d1dd5a_	184	Ribosome recycling factor, RRF {Thermotoga maritim	100.0
d1ek8a_	185	Ribosome recycling factor, RRF {Escherichia coli [	100.0
d1vi6a_	193	Ribosomal protein S2 {Archaeon Archaeoglobus fulgi	100.0
d1eh1a_	185	Ribosome recycling factor, RRF {Thermus thermophil	100.0
d1ge9a_	184	Ribosome recycling factor, RRF {Aquifex aeolicus [	100.0
d2a1fa1	236	Uridylate kinase PyrH {Haemophilus influenzae [Tax	99.97
d2brxa1	225	Uridylate kinase PyrH {Pyrococcus furiosus [TaxId:	99.96
d1ybda1	236	Uridylate kinase PyrH {Neisseria meningitidis [Tax	99.96
d2ij9a1	219	Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax	99.96
d1z9da1	238	Uridylate kinase PyrH {Streptococcus pyogenes [Tax	99.94
d2akoa1	250	Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1	99.92
d1wiha_	84	Ribosome recycling factor, RRF {Mouse (Mus musculu	99.92
d2ap9a1	291	N-acetyl-l-glutamate kinase {Mycobacterium tubercu	99.88
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	99.87
d2btya1	282	N-acetyl-l-glutamate kinase {Thermotoga maritima [	99.87
d2j0wa1	292	Aspartokinase {Escherichia coli [TaxId: 562]}	99.87
d1xb2b2	111	Elongation factor Ts (EF-Ts), dimerisation domain	99.87
d1e19a_	313	Carbamate kinase {Archaeon Pyrococcus furiosus [Ta	99.86
d2hmfa1	302	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.86
d2cdqa1	304	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.86
d1efub4	85	Elongation factor Ts (EF-Ts), dimerisation domain	99.82
d1tfea_	142	Elongation factor Ts (EF-Ts), dimerisation domain	99.82
d1b7ba_	307	Carbamate kinase {Enterococcus faecium [TaxId: 135	99.81
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	99.73
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	99.72
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	99.71
d1gs5a_	258	N-acetyl-l-glutamate kinase {Escherichia coli [Tax	99.69
d1xb2b3	109	Elongation factor Ts (EF-Ts), dimerisation domain	99.59
d1efub2	143	Elongation factor Ts (EF-Ts), dimerisation domain	99.58
d1efub2	143	Elongation factor Ts (EF-Ts), dimerisation domain	99.55
d1f2ea1	121	Class beta GST {Sphingomonas paucimobilis [TaxId:	99.5
d1n2aa1	121	Class beta GST {Escherichia coli [TaxId: 562]}	99.49
d1pmta1	121	Class beta GST {Proteus mirabilis [TaxId: 584]}	99.48
d1axda1	129	Class phi GST {Maize (Zea mays), type I [TaxId: 45	99.47
d1gwca1	138	Class tau GST {Aegilops tauschii, also known as Tr	99.45
d1ljra1	165	Class theta GST {Human (Homo sapiens) [TaxId: 9606	99.43
d1fw1a1	125	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	99.43
d1aw9a1	135	Class phi GST {Maize (Zea mays), type III [TaxId:	99.41
d3gtub1	140	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	99.41
d2a2ra1	132	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1jlva1	123	Class delta GST {Mosquito (Anopheles dirus b), iso	99.41
d2cvda1	124	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	99.41
d1k0da1	151	Yeast prion protein ure2p, nitrogen regulation fra	99.4
d1k3ya1	142	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	99.39
d2gsta1	133	Class mu GST {Rat (Rattus norvegicus) [TaxId: 1011	99.38
d1r5aa1	129	Class delta GST {Mosquito (Anopheles dirus b), iso	99.38
d1v2aa1	125	Class delta GST {Mosquito (Anopheles dirus b), iso	99.38
d1gsua1	133	Class mu GST {Chicken (Gallus gallus) [TaxId: 9031	99.37
d1nhya1	144	GST-like domain of elongation factor 1-gamma {Bake	99.37
d1b48a1	143	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	99.37
d1jlwa1	127	Class delta GST {Mosquito (Anopheles dirus b), iso	99.37
d2gsqa1	127	Class sigma GST {Squid (Ommastrephes sloani pacifi	99.35
d2c4ja1	133	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1gula1	140	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	99.34
d1eema1	139	Class omega GST {Human (Homo sapiens) [TaxId: 9606	99.34
d1gnwa1	126	Class phi GST {Mouse-ear cress (Arabidopsis thalia	99.34
d1duga1	140	Class alpha GST {Schistosoma japonicum [TaxId: 618	99.29
d1tfea_	142	Elongation factor Ts (EF-Ts), dimerisation domain	99.28
d1e6ba1	133	Class zeta GST {Mouse-ear cress (Arabidopsis thali	99.28
d1oyja1	145	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	99.26
d2fhea1	136	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	99.23
d1m0ua1	127	Class sigma GST {Fruit fly (Drosophila melanogaste	99.22
d1tw9a1	129	Class sigma GST {Heligmosomoides polygyrus [TaxId:	99.18
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	99.17
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	99.13
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	99.1
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	99.07
d1tu7a1	131	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	99.07
d1okta1	126	Pf GST {Malarial parasite (Plasmodium falciparum)	99.07
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	99.07
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	99.05
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	99.04
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	99.03
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	99.03
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	99.01
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	99.0
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	99.0
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	99.0
d1oe8a1	123	Class alpha GST {Blood fluke (Schistosoma haematob	98.94
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	98.93
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	98.91
d1xb2b3	109	Elongation factor Ts (EF-Ts), dimerisation domain	98.86
d1k0ma1	149	Chloride intracellular channel 1 (clic1) {Human (H	98.86
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	98.84
d2hrkb1	118	GU4 nucleic-binding protein 1, Arc1p {Baker's yeas	98.75
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	98.7
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	98.67
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	98.65
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	98.64
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	98.62
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	98.57
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	98.57
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	98.57
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	98.56
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	98.55
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	98.53
d1duga2	80	Class alpha GST {Schistosoma japonicum [TaxId: 618	98.53
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	98.52
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	98.5
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	98.37
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	98.27
d1oe8a2	81	Class alpha GST {Blood fluke (Schistosoma haematob	97.78
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	97.77
d1z9ha1	161	Microsomal prostaglandin E synthase-2 {Crab-eating	97.76
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	94.72
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	94.56
d1g7oa1	140	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	94.51
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	94.48
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	94.02
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	93.27
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	93.26
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	92.47
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	91.65
d1x94a_	191	Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T	91.6
d1x92a_	194	Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi	91.57
d1tk9a_	188	Phosphoheptose isomerase GmhA1 {Campylobacter jeju	91.52
d2fnoa1	149	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	91.47
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	91.45
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	91.11
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	90.9
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	90.82
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	88.78
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	83.86
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	83.2

>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-65  Score=535.34  Aligned_cols=221  Identities=44%  Similarity=0.801  Sum_probs=217.9

Q ss_pred             hhhhhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHH
Q psy3752         173 AEKIMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAV  252 (1012)
Q Consensus       173 ~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~  252 (1012)
                      +++|+++|+||||++++|||+|++||||.|+|+|||||++|+.+|++|+++|..++++||+||||||+++++++|+++|+
T Consensus         1 I~~ll~ag~H~Gh~~~~wnpkm~~yIyg~rngihIIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~i~~~A~   80 (234)
T d2uubb1           1 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAE   80 (234)
T ss_dssp             CCCSSCTTSTTBCCCSCCCGGGGGGEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCCEEEECCSSSSHHHHHHHHH
T ss_pred             ChhHHhCCCcccCCcCcCCCCCccceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhcCCceeEEeccHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeC
Q psy3752         253 RAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID  332 (1012)
Q Consensus       253 ~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~  332 (1012)
                      +||++||++||+|||||||.|+++++++|++++....++.++.+||||...+.|++.||+++|+|+++|+++||+|||+|
T Consensus        81 ~~~~~yv~~RWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~tkke~~~~~~~~~kl~k~~~Gi~~m~~~Pd~viv~d  160 (234)
T d2uubb1          81 RAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVD  160 (234)
T ss_dssp             SSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHHSSTTGGGSCHHHHTHHHHHHHHHHHHSTTGGGCSSCCSEEEESC
T ss_pred             HhCCEEeccceeCCccccccccchhhhhhHHHHHHhhcCcccccchHHHHHHHHHHHHHHHhhccchhhhhcceeEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752         333 VGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  393 (1012)
Q Consensus       333 ~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~  393 (1012)
                      |..|++||+||.++||||||||||||||+.|||||||||||.+||+||+++|++||++|+.
T Consensus       161 ~~~~~~Ai~Ea~~l~IPvIaivDTn~dp~~vdypIP~NDds~~sI~li~~~l~~ai~~gk~  221 (234)
T d2uubb1         161 PTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARG  221 (234)
T ss_dssp             TTTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCSSCHHHHHHHHHHHHHHHHTTSS
T ss_pred             CCccHHHHHHHHhhCCCEEEEeecCCCccCCcEEEECCCchHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999985

>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-64  Score=521.96  Aligned_cols=218  Identities=47%  Similarity=0.868  Sum_probs=214.9

Q ss_pred             hhhcccccCccccccCCCCcceeecccCCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcC
Q psy3752         176 IMQAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG  255 (1012)
Q Consensus       176 l~~a~~h~Gh~~~~wnp~m~~yi~~~r~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~  255 (1012)
                      |+++|+||||+.++|||+|++||||.|+|+|||||++|+.+|++|++++..++.+||+||||||+++++++|+++|++||
T Consensus         1 ll~ag~H~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~~T~~~L~~A~~~l~~~~~~~g~iLfVgTk~~~~~~i~~~a~~~~   80 (218)
T d2gy9b1           1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCD   80 (218)
T ss_dssp             SCCTTSSSCCCSSCCCGGGGGGBCCCBTTBCCBCHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSTTSHHHHHHHHHHTT
T ss_pred             CCccccccCcccCccCCCcccceecccCCcEEEcHHHHHHHHHHHHHHHHHhhcCCCeEEEEecchhhhHHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCC
Q psy3752         256 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY  335 (1012)
Q Consensus       256 ~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~  335 (1012)
                      ++||++||+|||||||+++++++++|+.++.....+.|+.++|||.+.+.|+++||+++|+|+++|+++||+|||+||..
T Consensus        81 ~~yvn~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~~~~~~Kke~~~~~~~~~kl~~~~~Gi~~m~~lPd~vii~d~~~  160 (218)
T d2gy9b1          81 QFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADH  160 (218)
T ss_dssp             CEEECSCCCTTTTTTHHHHHHHHHHHHHHHHHHSSTTSSSSCHHHHHHHHHHHHHHHHHSSSGGGCCCCCCEEEESCTTT
T ss_pred             CceecceeecCcccchhhhhhHHHHHHHHHHHhhcCcccccchHHHHHHHHHHHHHHHhhcCccCCCCCCceeeeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752         336 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  393 (1012)
Q Consensus       336 ~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~  393 (1012)
                      |++||+||.++||||||||||||||+.|||||||||||.+||+|++++|++||++|+.
T Consensus       161 ~~~ai~Ea~~l~IP~I~ivDTn~dp~~idypIP~Ndds~~sI~li~~~l~~ai~~G~~  218 (218)
T d2gy9b1         161 EHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS  218 (218)
T ss_dssp             THHHHHHHHHTTCCEEECCCSSSCGGGCTEECCSCSSCHHHHHHHHHHHHHHHHTTTT
T ss_pred             cHHHHHHHHHcCCCEEEEeeCCCCCccCceeeecCCcHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999973

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=100.00  E-value=1.2e-52  Score=421.90  Aligned_cols=184  Identities=43%  Similarity=0.696  Sum_probs=182.0

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHH
Q psy3752         829 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA  908 (1012)
Q Consensus       829 ~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~a  908 (1012)
                      +++++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||+|||+|++++|++|+|+|||++++++|++|
T Consensus         2 ~~~i~~~~~~kM~kai~~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekA   81 (185)
T d1is1a_           2 INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKA   81 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhCCeEEEECCCCccHHHHhhhccCCCceEEEEecccchHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHH
Q psy3752         909 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ  988 (1012)
Q Consensus       909 i~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq  988 (1012)
                      |++||||+||++||+.|||+||+||+|+|++++|.+|+.+|++|++|||+||++++++|+++|++.+|||+.++++++||
T Consensus        82 I~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~~iseD~~k~~~~~iq  161 (185)
T d1is1a_          82 IMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQ  161 (185)
T ss_dssp             HHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHhcccccccccCCceeeecCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC
Q psy3752         989 KLTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus       989 ~~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
                      ++||+|+++||+++++||||||+|
T Consensus       162 ~ltd~~~~~id~~~~~KekEim~v  185 (185)
T d1is1a_         162 KLTDVAVKKIDEVLAAKEKELMEV  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999987

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.6e-52  Score=417.68  Aligned_cols=183  Identities=35%  Similarity=0.583  Sum_probs=180.4

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHH
Q psy3752         829 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA  908 (1012)
Q Consensus       829 ~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~a  908 (1012)
                      +++++.+++++|++++++|+++|+++|+||+||++||+|+|+|||+++||+|||+|++++|++|+|+|||++++++|++|
T Consensus         1 i~~~l~~~~~kM~kai~~l~~el~~irtGRasp~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekA   80 (183)
T d1wqga1           1 IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETA   80 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHhhhccCcceEEEeecchhhHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHH
Q psy3752         909 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ  988 (1012)
Q Consensus       909 i~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq  988 (1012)
                      |++||||+||++||+.|||+||+||+|+|++++|.||+.+|++|++|||+||++++++|+++|++.+|+|+.++++++||
T Consensus        81 I~~s~lglnP~~dg~~Irv~iP~lT~E~R~elvK~ak~~~E~aKv~iRniR~~~~~~lk~~~k~~~iseD~~~~~~~~iq  160 (183)
T d1wqga1          81 IRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLD  160 (183)
T ss_dssp             HHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCcCCceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc
Q psy3752         989 KLTDKFILEINQLLINKEKEILT 1011 (1012)
Q Consensus       989 ~~~~~~~~~id~~~~~kekel~~ 1011 (1012)
                      ++||+|+++||+++++||||||+
T Consensus       161 ~ltd~~~~~id~~~~~KekEil~  183 (183)
T d1wqga1         161 KTTHQYVTQIDELVKHKEGELLE  183 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999995

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.1e-52  Score=416.94  Aligned_cols=184  Identities=37%  Similarity=0.600  Sum_probs=181.1

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHH
Q psy3752         829 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA  908 (1012)
Q Consensus       829 ~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~a  908 (1012)
                      +++++++++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++++|++|+|+|||++++++|++|
T Consensus         1 i~~~~~~~~~kM~~ai~~l~~el~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~I~kA   80 (184)
T d1dd5a_           1 VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKA   80 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHCceEEeeCCCcccHHHHhhhccCCcceeEeeccchhhHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHH
Q psy3752         909 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ  988 (1012)
Q Consensus       909 i~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq  988 (1012)
                      |++|+||+||++||+.|||+||+||+|+|++++|.+|+.+|+||++||++||++++++|+++|++++|||+.++++++||
T Consensus        81 I~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~k~~~iseD~~k~~~~~iq  160 (184)
T d1dd5a_          81 INASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQ  160 (184)
T ss_dssp             HHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHhcccCCCCccCcccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC
Q psy3752         989 KLTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus       989 ~~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
                      ++||+|+++||+++++||||||+.
T Consensus       161 ~ltd~~~~~id~~~~~Kekeim~~  184 (184)
T d1dd5a_         161 KLTDEFIEKLDEVFEIKKEEIMEF  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999973

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-51  Score=414.96  Aligned_cols=184  Identities=40%  Similarity=0.673  Sum_probs=181.4

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHHH
Q psy3752         829 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA  908 (1012)
Q Consensus       829 ~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~a  908 (1012)
                      +++++++++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|+++++++|+|+|||++++++|++|
T Consensus         2 i~~i~~~~~~kM~k~ie~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekA   81 (185)
T d1ek8a_           2 ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKA   81 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCTTTTTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCeeEEeeCCCcccHHHHhhhccCcchheeeeechHhhHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHHH
Q psy3752         909 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ  988 (1012)
Q Consensus       909 i~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~iq  988 (1012)
                      |++||||+||++||+.|||+||+||+|+|++++|.+|+.+|++|++||++||++++++|+++|++++|||+.++++++||
T Consensus        82 I~~s~lgl~p~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~~kv~iR~iRr~~~~~ik~~~k~~~iseD~~k~~~~~iq  161 (185)
T d1ek8a_          82 IMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQ  161 (185)
T ss_dssp             HHHTCSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCccccceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcC
Q psy3752         989 KLTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus       989 ~~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
                      ++||+|++++|+++++||||||+.
T Consensus       162 ~ltd~~~~~id~~~~~Kekeil~~  185 (185)
T d1ek8a_         162 KLTDAAIKKIEAALADKEAELMQF  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999973

>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=9.9e-52  Score=414.85  Aligned_cols=174  Identities=24%  Similarity=0.396  Sum_probs=164.1

Q ss_pred             ccchhhhhhhcccccCccccccCCCCcceeeccc-CCceeecHHHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHH
Q psy3752         169 SLTPAEKIMQAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVI  247 (1012)
Q Consensus       169 ~lt~~~~l~~a~~h~Gh~~~~wnp~m~~yi~~~r-~g~~ii~l~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v  247 (1012)
                      .++ +++|+++|+|+||+..+||  |++||||.| ||+|||||++|+++|++|++|+..+  ++|+|||||||++++.+|
T Consensus         5 lv~-i~~ll~agvH~G~~~~~~~--M~~YIy~~r~ngi~IIdL~kT~~~L~~A~~~l~~~--~~~~ILfVgtk~~~~~~v   79 (193)
T d1vi6a_           5 LVP-PDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--EPSKILLVAARQYAHKPV   79 (193)
T ss_dssp             SSC-HHHHHHHTTTBCCSCCCTT--TGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS--CGGGEEEEECSGGGHHHH
T ss_pred             eee-HHHHHHhCeeeCCCcCCCC--CccccccccCCCeEEeeHHHHHHHHHHHHHHHHHh--ccCceEEeecccchHHHH
Confidence            355 9999999999999987776  999999998 6999999999999999999999976  689999999999999999


Q ss_pred             HHHHHHcCCCeecCcccCccccChHHHHHHHHHHHHHHhhhccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCE
Q psy3752         248 ANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDA  327 (1012)
Q Consensus       248 ~~~a~~~~~~~v~~rw~~G~lTN~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~  327 (1012)
                      +++|++||++||++||+||+||||.+                                              .+.++||+
T Consensus        80 ~~~A~~~g~~~v~~RWlgG~LTN~~~----------------------------------------------~~~~~P~~  113 (193)
T d1vi6a_          80 QMFSKVVGSDYIVGRFIPGTLTNPML----------------------------------------------SEYREPEV  113 (193)
T ss_dssp             HHHHHHHCCEEEESSCCTTTTTCTTS----------------------------------------------TTCCCCSE
T ss_pred             HHHHHhcCCCcccccccCCcccchHH----------------------------------------------hhcccceE
Confidence            99999999999999999999999863                                              12468999


Q ss_pred             EEEeCCCCchhHHHHHHhcCCCeEEEecCCCCCCcceeeccCCCCchhhHHHHhhhhhhhhhhhhh
Q psy3752         328 IFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  393 (1012)
Q Consensus       328 ~iv~~~~~~~~ai~Ea~~l~iP~i~l~Dt~~~~~~i~~~IP~N~~s~~si~l~~~~l~~ai~~g~~  393 (1012)
                      +||+||..|++||+||.++||||||||||||||+.|||||||||||.+|++|++|+|+++|.+++.
T Consensus       114 liv~dp~~d~~ai~Ea~~l~IPvI~ivDTn~~p~~vdy~IP~Ndds~~Si~li~~~l~~ai~~~k~  179 (193)
T d1vi6a_         114 VFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRG  179 (193)
T ss_dssp             EEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCcchHHHHHHHHHcCCCeeeEeccCCCCcccceEEeCCCChHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999999999874

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-51  Score=412.65  Aligned_cols=184  Identities=39%  Similarity=0.658  Sum_probs=181.3

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHH
Q psy3752         827 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIK  906 (1012)
Q Consensus       827 ~~~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~  906 (1012)
                      |.+++++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++++++|+|+|||++++++|+
T Consensus         1 m~~~~~~~~~~~~M~k~i~~l~~~l~~irtGra~p~lld~i~V~~~g~~~pL~~lA~Isv~~~~~l~I~~~D~~~v~~I~   80 (185)
T d1eh1a_           1 MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIE   80 (185)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHcCCeEEeeCCCcccHHHHhhhccCCcceEEeeccchHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHH
Q psy3752         907 KAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYD  986 (1012)
Q Consensus       907 ~ai~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~  986 (1012)
                      +||++||||+||++||+.|||+||+||+|+|++++|.+|+.+|++|++||++||++++++|+++|++.+|||+.++++++
T Consensus        81 kAI~~s~l~l~p~~dg~~Irv~iP~lT~E~R~elvK~~k~~~E~akv~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~e  160 (185)
T d1eh1a_          81 KAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAE  160 (185)
T ss_dssp             HHHSSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHhcCcccccccCccceeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q psy3752         987 IQKLTDKFILEINQLLINKEKEIL 1010 (1012)
Q Consensus       987 iq~~~~~~~~~id~~~~~kekel~ 1010 (1012)
                      ||++||+|++++|+++++||||||
T Consensus       161 iq~ltd~~~~~id~~~~~KekEil  184 (185)
T d1eh1a_         161 IQKITDEFIAKADQLAEKKEQEIL  184 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=4.2e-50  Score=402.98  Aligned_cols=181  Identities=38%  Similarity=0.632  Sum_probs=176.0

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHhhhcCCCCcccccceEEEecCccccccceeeEeecCCceEEEeecCcccHHHHHH
Q psy3752         828 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKK  907 (1012)
Q Consensus       828 ~~~~i~~~~~~~m~~~~~~~~~~l~~~~~gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d~~~~~~i~~  907 (1012)
                      .+++++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||+|+|+|+++++++|+|+|||++++++|++
T Consensus         4 ~~~~i~~~~~~~m~k~i~~l~~el~~irtGRasp~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~i~~~D~~~v~~Iek   83 (184)
T d1ge9a_           4 ELEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEK   83 (184)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHHhhcCCcceeeeecccHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHhHHHHH
Q psy3752         908 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI  987 (1012)
Q Consensus       908 ai~~s~l~~~p~~~~~~i~v~iP~~t~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k~~~k~~~~s~D~~~~~~~~i  987 (1012)
                      || .|+||+||+++|+.|||+||+||+|+|++++|.||+.+|+||++|||+||++++++|+++   .+|||+.++++++|
T Consensus        84 AI-~s~lglnp~~~g~~Iri~iP~lT~E~R~~lvK~ak~~~E~aKv~iRniR~~~~~~lKk~k---~iseD~~k~~~~~i  159 (184)
T d1ge9a_          84 AI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE---GISEDEKKRALERL  159 (184)
T ss_dssp             HH-HHHHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TCCHHHHHHHHHHH
T ss_pred             HH-hccCCCCCCCCCcceeccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence            99 579999999999999999999999999999999999999999999999999999999763   49999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3752         988 QKLTDKFILEINQLLINKEKEILTL 1012 (1012)
Q Consensus       988 q~~~~~~~~~id~~~~~kekel~~~ 1012 (1012)
                      |++||+|++++|+++++||||||+|
T Consensus       160 qkltd~~~~~id~~~~~Kekeim~v  184 (184)
T d1ge9a_         160 QKLTDKYIDEINKLMEAKEKEIMSV  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999986

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=1.9e-30  Score=275.81  Aligned_cols=232  Identities=45%  Similarity=0.762  Sum_probs=179.3

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII  668 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1012)
                      ++|+|+|+  +|+++.++.+..++.+++++++++|+++++.|+++++|+||+..+........+.+..............
T Consensus         5 ~kRIViKi--Ggs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vivVssg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   82 (236)
T d2a1fa1           5 YKRILLKL--SGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVM   82 (236)
T ss_dssp             CSEEEEEE--CGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEE--ccceecCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecccccchhhhhhhcCCCchhhHHHHHHHHHH
Confidence            35788996  6677766666669999999999999999999999999999853332222222233333333444444444


Q ss_pred             HHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeec
Q psy3752         669 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK  748 (1012)
Q Consensus       669 ~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTD  748 (1012)
                      ....+...+..........+...............+...++.+.+|++.+..+.+..+||++|+++|.+++||.|+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dnD~laa~vA~~~~Ad~lii~TD  162 (236)
T d2a1fa1          83 NGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATK  162 (236)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred             HHHHHHHHHHhhccccchhhhhhhhhhHHHhhhhhhhhhhhhcccccccccccCCCCCCcHHHHHHHHHhchhHHHHhhc
Confidence            45555555666666666555555555555666777888889999999887777777889999999999999999999999


Q ss_pred             cccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         749 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       749 VdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      ||||||+||+.+|+|+++++++++|..+.|+|++|++|+++|.++|++++|+||++|+++.++|+|+.+||+|.
T Consensus       163 VdGvyt~dP~~~~~A~~i~~i~~~e~l~~G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI~  236 (236)
T d2a1fa1         163 VDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC  236 (236)
T ss_dssp             SSSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred             ccccccccccccccccccccccHHHHHhcCCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCcceeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999983

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=3.5e-30  Score=271.06  Aligned_cols=211  Identities=27%  Similarity=0.368  Sum_probs=171.0

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccccc--CCCcchHHHHHHHHHHHH
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIIN  669 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  669 (1012)
                      +|+|   .|+++++++.  .+.+++++++++|+++.+ |+++|||||||+.++++.....  +.+....++.+...+..+
T Consensus         3 IViK---iGGs~l~~~~--~~~~~i~~l~~~I~~l~~-~~~~viV~ggG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (225)
T d2brxa1           3 IVFD---IGGSVLVPEN--PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRAN   76 (225)
T ss_dssp             EEEE---ECHHHHCSSS--CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEE---eehhhcCCCC--CCHHHHHHHHHHHHHHHc-CCcEEEEECccHHHHHHHHhhhhcchhhHHHHHhhhhHHHHH
Confidence            4567   4455555443  366789999999999866 7899999999998887765443  345555677777777778


Q ss_pred             HHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecc
Q psy3752         670 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV  749 (1012)
Q Consensus       670 ~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDV  749 (1012)
                      +.++...|...|++...-            +.....++++.+.|||++++  .++.+||++|+++|..++||+|+|+|||
T Consensus        77 ~~~~~~~l~~~~~~~~~~------------~~~~~~~~l~~~~ipv~~~~--~~~~~~D~lAa~lA~~l~Ad~lii~TDV  142 (225)
T d2brxa1          77 AMLLIAALREKAYPVVVE------------DFWEAWKAVQLKKIPVMGGT--HPGHTTDAVAALLAEFLKADLLVVITNV  142 (225)
T ss_dssp             HHHHHHHHGGGBCSSCBC------------SHHHHHHHHHTTCBCEECCC--STTCCHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             HHHHHHHHHhhhcccccc------------cHHHHHHHHHhcccccccCC--CCCcchhHHHHHHHHHhCchhhhhhhhh
Confidence            888888898888775321            22334467889999999754  4667899999999999999999999999


Q ss_pred             ccccccCCcCCcCcccccccCHHHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcce
Q psy3752         750 DGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT  819 (1012)
Q Consensus       750 dGVy~~dP~~~~~a~~i~~i~~~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT  819 (1012)
                      |||||+||+.+|+|++|++++++|+.+          +|+|..+. |+++|.++|++++|+||++|++|.++++|+.+||
T Consensus       143 dGVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k~-Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT  221 (225)
T d2brxa1         143 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPL-AAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGT  221 (225)
T ss_dssp             SSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHH-HHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSE
T ss_pred             hhhhhcccccccccccceEEecchHHHHhccCccccCCCCcccHH-HHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCc
Confidence            999999999999999999999988776          45676665 8899999999999999999999999999999999


Q ss_pred             EEEE
Q psy3752         820 LVYE  823 (1012)
Q Consensus       820 ~I~~  823 (1012)
                      +|.|
T Consensus       222 ~i~P  225 (225)
T d2brxa1         222 TIEP  225 (225)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9975

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

Probab=99.96  E-value=1.7e-29  Score=268.43  Aligned_cols=231  Identities=54%  Similarity=0.877  Sum_probs=189.0

Q ss_pred             HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHHH
Q psy3752         590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN  669 (1012)
Q Consensus       590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1012)
                      +++|+|+  +|+++++.++..+|.+.++++|++|+++++.|+++++|+|||..+........+.................
T Consensus         5 krIViKi--Ggs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (236)
T d1ybda1           5 KRVLLKL--SGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMN   82 (236)
T ss_dssp             SEEEEEE--CGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEEE--CcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccchhhHHHHHHHHHH
Confidence            5678896  67788777766799999999999999999999999999999766554444433333333333333333334


Q ss_pred             HHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecc
Q psy3752         670 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV  749 (1012)
Q Consensus       670 ~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDV  749 (1012)
                      ...+...+...+.....+................+...++.+.+|++....+.+..+||++|+++|..++||.|+++|||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdnD~laa~vA~~~~ad~liilTdV  162 (236)
T d1ybda1          83 ALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNV  162 (236)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             HHHHHHHHHhcCcchhhhhhhhhhhhhhhHHHHHHHhhhccCceeccccccccccccchHHHHHHHHHhCccceeeccCc
Confidence            44455557777777777666555555555666777888899999988776667778899999999999999999999999


Q ss_pred             ccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         750 DGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       750 dGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      |||||+||+.+|+|++++.++++|....|.++++++|+++|.++|++++|+||++|++|.++++|+.+||+|+
T Consensus       163 dGvy~~dP~~~~~a~~~~~~~~~e~~~~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh  235 (236)
T d1ybda1         163 DGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  235 (236)
T ss_dssp             SSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             cchhhccccccccceeeccccHHHHHhcCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence            9999999999999999999999999888999999999999999999999999999999999999999999996

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=7.7e-30  Score=267.52  Aligned_cols=206  Identities=26%  Similarity=0.407  Sum_probs=171.5

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccc--cCCCcchHHHHHHHHHHHH
Q psy3752         592 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI--QNIDRSTADYMGMLATIIN  669 (1012)
Q Consensus       592 ~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  669 (1012)
                      +|+|   .|++++++     +.+.+.+++++|+++.+.| +++||||||+.++++....  .+.++...+++++.++..+
T Consensus         3 IViK---iGgs~l~~-----~~~~i~~la~~i~~l~~~~-~~vIVvsgG~~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (219)
T d2ij9a1           3 VVLS---LGGSVLSN-----ESEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLN   73 (219)
T ss_dssp             EEEE---ECSSTTTT-----CHHHHHHHHHHHHHHHHHS-EEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEE---ecccccCC-----cHHHHHHHHHHHHHHHcCC-cEEEEECCCccccchhhhhhhcCccHHHHHHHHHHHHHhh
Confidence            4567   45555543     3478999999999998754 8999999999888765543  3567777888888888888


Q ss_pred             HHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcCCCCCCccHHHHHHHHHhcCCceEEeeecc
Q psy3752         670 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV  749 (1012)
Q Consensus       670 ~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~~~~s~D~~Aa~lA~~l~Ad~liilTDV  749 (1012)
                      +..++..|...+...             ..+.....++++.+.+||+.|+  .+..++|++|+++|..++||+|+++|||
T Consensus        74 ~~~~~~~l~~~~~~~-------------~~~~~~~~~l~~~~~v~v~~~~--~~~~stD~laa~vA~~l~Ad~liilTDV  138 (219)
T d2ij9a1          74 AMLLISAIPSAAKKV-------------PVDFMEAEELSKLYRVVVMGGT--FPGHTTDATAALLAEFIKADVFINATNV  138 (219)
T ss_dssp             HHHHHHHCTTBCSSC-------------CSSHHHHHHHHTTCSEEEECCC--SSSSCTHHHHHHHHHHTTCSEEEEEESS
T ss_pred             HHHHHHHhhhccchh-------------hHHHHHHHHHhccCCceEECCC--CCCCcccHHHHHHHHHcCchHhhhccCc
Confidence            887777777766542             2334556678888999998764  5668899999999999999999999999


Q ss_pred             ccccccCCcCCcCcccccccCHHHHHh---------hhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceE
Q psy3752         750 DGIYNSDPNKCLSAIIYKKITFDEVIS---------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL  820 (1012)
Q Consensus       750 dGVy~~dP~~~~~a~~i~~i~~~e~~~---------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~  820 (1012)
                      |||||+||+.+|+|++|++++++++.+         +|+|++|+.|+++|.++|++++|+||. |++|.++|+|+.+||+
T Consensus       139 DGvYt~dP~~~~~A~~i~~is~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~-~~ni~~~l~Ge~vGT~  217 (219)
T d2ij9a1         139 DGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGT-PENIMKAVKGEAVGTV  217 (219)
T ss_dssp             SSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECC-HHHHHHHHTTCCCSEE
T ss_pred             ccccccccccCcccccccccCHHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCC-CcHHHHHHCCCCCceE
Confidence            999999999999999999999998765         578999999999999999999999985 7899999999999999


Q ss_pred             EE
Q psy3752         821 VY  822 (1012)
Q Consensus       821 I~  822 (1012)
                      |+
T Consensus       218 Is  219 (219)
T d2ij9a1         218 IA  219 (219)
T ss_dssp             EC
T ss_pred             eC
Confidence            84

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.94  E-value=9.6e-27  Score=246.94  Aligned_cols=233  Identities=36%  Similarity=0.586  Sum_probs=183.0

Q ss_pred             HHHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcccccCCCcchHHHHHHHHHHH
Q psy3752         589 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII  668 (1012)
Q Consensus       589 k~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1012)
                      ++++|+|+  +|++++.+++..+|.++++++|++|+++++.|++|++|+|||..+..+.....+.......+....+...
T Consensus         4 ~krIViKi--Ggs~lt~~~~~~l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (238)
T d1z9da1           4 YQRILIKL--SGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVM   81 (238)
T ss_dssp             CSEEEEEE--CGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEE--CcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecccccccceeccccCCcchhHHHHHHHHHHH
Confidence            35778895  5555554555559999999999999999999999999999986665555555555555566666666666


Q ss_pred             HHHHHHHHHHhcCCceeEeehhchhhhhhhcchHHHHHHhhCCCEEEEcCcC-CCCCCccHHHHHHHHHhcCCceEEeee
Q psy3752         669 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGI-GNPFFTTDTTAALRAAEIKAEIILKAT  747 (1012)
Q Consensus       669 ~~~~l~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~l~~~L~~g~VPVi~G~~-g~~~~s~D~~Aa~lA~~l~Ad~liilT  747 (1012)
                      ...+.+..+..+|+..............................+++..+.. .....++|.+|+.+|..++|+.++++|
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~a~~li~~t  161 (238)
T d1z9da1          82 NALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKN  161 (238)
T ss_dssp             HHHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred             HHHHHHHHHhhCCccchhhhhhhhHHHHhhhhHHHHHhhhccccccceecceeccCCCCchHHHHHHHHHhhhhhhcccc
Confidence            6666667788999988776665554433333333333344444444443322 233455899999999999999999999


Q ss_pred             ccccccccCCcCCcCcccccccCHHHHHhhhcCcccHHHHHHHHhCCCcEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         748 KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       748 DVdGVy~~dP~~~~~a~~i~~i~~~e~~~~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      |||||||+||+.+++|++++.+++.+....|+|++|++|++.|.++|++++|+||++|++|.++++|+.+||+|+.
T Consensus       162 dVdGvy~~~P~~~~~a~~~~~~~~~~~~~~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~  237 (238)
T d1z9da1         162 GVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN  237 (238)
T ss_dssp             SCCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             cccceecccccccccchhhccccccchhccCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEecc
Confidence            9999999999999999999999999988899999999999999999999999999999999999999999999975

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

Probab=99.92  E-value=1e-25  Score=240.72  Aligned_cols=222  Identities=17%  Similarity=0.190  Sum_probs=163.1

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccc-hHhhhhcccccCCCcchHHHHHHHHHH--
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NICRGISNKIQNIDRSTADYMGMLATI--  667 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG-~~~~~~~~~~~~~~~~~~~~~~~~~~~--  667 (1012)
                      ++|+|+   |+++++++. .++.+++++++++|+++.+ |++++|||||| ...+.....    ........+++++.  
T Consensus         2 rIViKl---GGs~it~k~-~~~~~~l~~~~~~I~~l~~-~~~~vIV~gGa~~~G~~~~~~----~~~~~~~~~~~~~~g~   72 (250)
T d2akoa1           2 RIVVKV---GSHVISEEN-TLSFERLKNLVAFLAKLME-KYEVILVTSAAISAGHTKLDI----DRKNLINKQVLAAIGQ   72 (250)
T ss_dssp             EEEEEE---CHHHHBCSS-SBCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHCCC----CSSSHHHHHHHHHHHH
T ss_pred             EEEEEe---ccCeeeCCC-CcCHHHHHHHHHHHHHHHc-CCeEEEEEcCccccccccccc----ccchhhhhhhhhcccc
Confidence            456774   445555443 5899999999999999975 78999998885 444433332    23333333333333  


Q ss_pred             -HHHHHHHHHHHhcCCceeEeehhch---hhhhhhcchHHHHHHhhCCCEEEEcCcCCC-----CCCccHHHHHHHHHhc
Q psy3752         668 -INSLALFDILNKSGIISHVMSAISI---EKFLESYIPLNAIKYLEEGKVVIFAGGIGN-----PFFTTDTTAALRAAEI  738 (1012)
Q Consensus       668 -~~~~~l~~~l~~~gi~a~~l~~~~~---~~~~~~~~~~~l~~~L~~g~VPVi~G~~g~-----~~~s~D~~Aa~lA~~l  738 (1012)
                       .....+...|..+|+.+........   .........+.+..+++.+.+||+++....     ...++|++|+++|..+
T Consensus        73 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ipv~~~~~~~~~~~~~~~~~D~~A~~lA~~~  152 (250)
T d2akoa1          73 PFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFF  152 (250)
T ss_dssp             HHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHT
T ss_pred             hhHHHHHHHHhhhcccccccccccccchhhhhhhhhhhHHHHHHHHhCcccccccCccccccccccccchhhHHHHHHhc
Confidence             2344556668888888754332221   111233345678889999999999763211     1234999999999999


Q ss_pred             CCceEEeeeccccccccCCcCCcCcccccccCH--HHHHh----------hhcCcccHHHHHHHHhCCCcEEEEecCCch
Q psy3752         739 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG  806 (1012)
Q Consensus       739 ~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~--~e~~~----------~G~~v~~~~aa~~a~~~gi~v~I~~g~~~~  806 (1012)
                      +|++|+++||||||||+||+.+|+|++|+++++  ++..+          +|||..|+.||..|.++|++|+|+||++|+
T Consensus       153 ~a~~li~~tdVdGVyd~dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~~  232 (250)
T d2akoa1         153 DADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLS  232 (250)
T ss_dssp             TCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred             ccceeeeccCCCceeeCCCcccccccchhhccccchHHhhhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCcc
Confidence            999999999999999999999999999999986  23221          589999999999999999999999999999


Q ss_pred             hHHHHhc-CCC-cceEE
Q psy3752         807 ALKRVIE-GKN-EGTLV  821 (1012)
Q Consensus       807 ~i~~~l~-Ge~-~GT~I  821 (1012)
                      ++.++|. |+. .||+|
T Consensus       233 ~l~~~l~~~~~~~GTv~  249 (250)
T d2akoa1         233 VAKTFLLEDKQIGGTLF  249 (250)
T ss_dssp             HHHHHHHSCCCCSSEEE
T ss_pred             HHHHHHhCCCCCCceEe
Confidence            9999874 443 69998

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

Probab=99.92  E-value=5e-27  Score=200.80  Aligned_cols=82  Identities=28%  Similarity=0.408  Sum_probs=80.3

Q ss_pred             CCCCcccccceEEEecCccccccceeeEeecCCceEEEeecC-cccHHHHHHHHHhcCCCCCcccCCCeEEEeCCCCCHH
Q psy3752         857 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKE  935 (1012)
Q Consensus       857 gr~~p~~l~~i~V~~~g~~~~l~~~a~i~~~~~~~l~i~~~d-~~~~~~i~~ai~~s~l~~~p~~~~~~i~v~iP~~t~E  935 (1012)
                      |||||++||+|+|+|||+++||+|||+|+++++++|+|+||| ++++++|+|||++||||+||++||+.|||+||+||.|
T Consensus         1 Gra~p~lld~I~V~~yg~~~pL~qlA~Isv~~~~~l~I~~~D~~~~~~~i~kAI~~S~LglnP~~dG~~Iri~iP~lT~~   80 (84)
T d1wiha_           1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG   80 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred             CCCChHHcCceEEEECCCcccHHHHhhhhcCCCceEEEEEeecccccHHHHHHHHhcCCCCCcccCCCEEEEECCCCCCC
Confidence            899999999999999999999999999999999999999999 8999999999999999999999999999999999999


Q ss_pred             HHH
Q psy3752         936 RRE  938 (1012)
Q Consensus       936 ~R~  938 (1012)
                      .|+
T Consensus        81 ~~~   83 (84)
T d1wiha_          81 PSS   83 (84)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            874

>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=5.5e-23  Score=224.34  Aligned_cols=222  Identities=16%  Similarity=0.196  Sum_probs=167.6

Q ss_pred             HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhh---hccccc----C---CCcchHH
Q psy3752         590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRG---ISNKIQ----N---IDRSTAD  659 (1012)
Q Consensus       590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~---~~~~~~----~---~~~~~~~  659 (1012)
                      +++|+|   .|+++++      +++.+..++++|+.|+..|.++|||||||.....   ......    +   .++..++
T Consensus        26 ktiVIK---lGGsvl~------~~~~~~~l~~dia~L~~~G~~vVlVhGg~~~i~~~l~~~~~~~~~~~~~r~t~~~~~~   96 (291)
T d2ap9a1          26 KVVVVK---YGGNAMT------DDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLD   96 (291)
T ss_dssp             CEEEEE---ECTHHHH------SHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHHHHH
T ss_pred             CEEEEE---ECcHHhc------CHHHHHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHcCCCcccccccccCcHHHHH
Confidence            456777   3444432      5567899999999999999999999999744332   222211    1   1445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhh---------------------hhhhcchHHHHHHhhCCCEEEEcC
Q psy3752         660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEK---------------------FLESYIPLNAIKYLEEGKVVIFAG  718 (1012)
Q Consensus       660 ~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~---------------------~~~~~~~~~l~~~L~~g~VPVi~G  718 (1012)
                      .+.++..+.....+.+.+...|+.+.++++.+...                     .++.++...+..+|++|.|||+++
T Consensus        97 ~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~G~v~~v~~~~I~~ll~~g~ipvi~~  176 (291)
T d2ap9a1          97 VARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVST  176 (291)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEES
T ss_pred             HHHHhhhhHHHHHHHHHHHhcCCccccchhhhcccccccccccccccccccceeecccccchHHHHHHHHhcCCCcccCc
Confidence            66666666677788888999999998887655421                     134567788999999999999997


Q ss_pred             cCC-CC----CCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-----hhcCcccHHHHH
Q psy3752         719 GIG-NP----FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFS  788 (1012)
Q Consensus       719 ~~g-~~----~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-----~G~~v~~~~aa~  788 (1012)
                      ... ..    +.++|.+|+.+|.+++||+|+|+|||||||+++|+..+   +++.++..++.+     .|||.+|+.||.
T Consensus       177 ~~~~~~g~~~n~d~D~lAa~lA~~l~AdkLI~LTdv~Gv~~~~~~~~~---~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~  253 (291)
T d2ap9a1         177 LAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRDS---LVSEIDTGTLAQLLPTLELGMVPKVEACL  253 (291)
T ss_dssp             EEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCTTC---EESEEEHHHHHHHGGGSCTTTHHHHHHHH
T ss_pred             cccCCccccccccHHHHHHHHHHhcCCcEEEEeeccCccccccccccc---ccccCCHHHHHHHHhhhhCchHHHHHHHH
Confidence            321 11    24499999999999999999999999999999887544   444555444433     799999999999


Q ss_pred             HHHhCCCc-EEEEecCCchhHHH-HhcCCCcceEEEE
Q psy3752         789 FCRDQKLP-IRVFSIIKSGALKR-VIEGKNEGTLVYE  823 (1012)
Q Consensus       789 ~a~~~gi~-v~I~~g~~~~~i~~-~l~Ge~~GT~I~~  823 (1012)
                      .|.+.|++ |+|+||+.++.|.. ++.++.+||+|..
T Consensus       254 ~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~r  290 (291)
T d2ap9a1         254 RAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR  290 (291)
T ss_dssp             HHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred             HHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEec
Confidence            99999997 99999999999885 6778889999974

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=7.1e-22  Score=215.67  Aligned_cols=220  Identities=15%  Similarity=0.145  Sum_probs=169.6

Q ss_pred             HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhh---ccccc----C---CCcchHH
Q psy3752         590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKIQ----N---IDRSTAD  659 (1012)
Q Consensus       590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~---~~~~~----~---~~~~~~~  659 (1012)
                      +++|+|+   |++.      ..++..+.+++++|+.|...|.++|||||||......   .....    +   .++..++
T Consensus        27 ktiVIKl---GG~~------l~~~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~gi~~~~~~g~RvT~~~~l~   97 (300)
T d2bufa1          27 KTLVIKY---GGNA------MESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMD   97 (300)
T ss_dssp             CEEEEEE---CCTT------TTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHHHH
T ss_pred             CEEEEEE---ChHH------hCChhHHHHHHHHHHHHHHcCCcEEEecChHHHHHHHHHhcccCceecCCcccccchhHH
Confidence            3567774   3322      2355678899999999999999999999998444322   22111    1   2556667


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhh---------------------------hhhcchHHHHHHhhCCC
Q psy3752         660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------------------LESYIPLNAIKYLEEGK  712 (1012)
Q Consensus       660 ~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------------------------~~~~~~~~l~~~L~~g~  712 (1012)
                      ...++..+..+..+++.|.+.|++++++++.+...+                           ++.++.+.+..+++.|.
T Consensus        98 ~~~~~~~g~vn~~lv~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~~~~i~~ll~~g~  177 (300)
T d2bufa1          98 VVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDF  177 (300)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTTC
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCcccceeecchhHHHHHhcCCC
Confidence            777777777788889999999999999998775211                           34468889999999999


Q ss_pred             EEEEcC-cC---CC-CCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcC
Q psy3752         713 VVIFAG-GI---GN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLE  780 (1012)
Q Consensus       713 VPVi~G-~~---g~-~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~  780 (1012)
                      |||+++ +.   |. -++++|.+|+.+|.+|+||+|+|+|||||||+.++      +++++++..++.+       .|+|
T Consensus       178 Ipvis~~~~~~~G~~~nin~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~~~g------~~~~~l~~~~~~~li~~~~i~gGM  251 (300)
T d2bufa1         178 IPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQG------QVLTGLSTEQVNELIADGTIYGGM  251 (300)
T ss_dssp             EEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCTTS------CBCCEECHHHHHHHHHTTCSCTTH
T ss_pred             eEEecccccCcccchhcccHHHHHHHHHHHcCCCeEEEEcCCCccccCCC------cchhhccHHHHHHHHHcCCcCchH
Confidence            999986 11   11 23569999999999999999999999999997654      3466666655543       5889


Q ss_pred             cccHHHHHHHHhCCCc-EEEEecCCchhHHH-HhcCCCcceEEEEe
Q psy3752         781 IMDSTAFSFCRDQKLP-IRVFSIIKSGALKR-VIEGKNEGTLVYEI  824 (1012)
Q Consensus       781 v~~~~aa~~a~~~gi~-v~I~~g~~~~~i~~-~l~Ge~~GT~I~~~  824 (1012)
                      .+|+.||..|.+.|++ ++|+||..|+.|.. ++.++.+||.|++.
T Consensus       252 ~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~~~  297 (300)
T d2bufa1         252 LPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR  297 (300)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHcCCCCceeEEecC
Confidence            9999999999999985 99999999998775 67788899999864

>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=7e-23  Score=222.26  Aligned_cols=219  Identities=21%  Similarity=0.164  Sum_probs=169.4

Q ss_pred             HHHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhccc---ccC-------CCcchHH
Q psy3752         590 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQN-------IDRSTAD  659 (1012)
Q Consensus       590 ~i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~~---~~~-------~~~~~~~  659 (1012)
                      +++|+|+   |+++++      ++..+++++++|+.|...|.++|||||||.........   ...       .+....+
T Consensus        22 k~iVIKl---Ggsvi~------~~~~~~~l~~dIa~L~~~G~~iVlVhGg~~~~~~~l~~~~i~~~~~~~~~~t~~~~~~   92 (282)
T d2btya1          22 KTFVIKF---GGSAMK------QENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTME   92 (282)
T ss_dssp             CEEEEEE---CSHHHH------SHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHHHHH
T ss_pred             CEEEEEE---CchHhC------ChhHHHHHHHHHHHHHHCCCeEEEEECCCccchhhHHHcCCcceeccCccccchhhHH
Confidence            4577884   444432      45678999999999999999999999998554332221   111       1334456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCceeEeehhchh----------------hhhhhcchHHHHHHhhCCCEEEEcCcC---
Q psy3752         660 YMGMLATIINSLALFDILNKSGIISHVMSAISIE----------------KFLESYIPLNAIKYLEEGKVVIFAGGI---  720 (1012)
Q Consensus       660 ~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~----------------~~~~~~~~~~l~~~L~~g~VPVi~G~~---  720 (1012)
                      ...+...+..+..++..|..+|++++++++.+..                ..++.++.+.+..+|++|.|||+++..   
T Consensus        93 ~~~~~~~~~~n~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~d~~~~g~~~~v~~~~i~~lL~~~~ipvi~~~~~~~  172 (282)
T d2btya1          93 IVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGE  172 (282)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEECS
T ss_pred             HHHHHHhchhhHHHHHHHHhcCCCeeeeeccccceeEeccccccccccccccccccChHHHHHHHhCCCceeecCcccCC
Confidence            6666666677777888899999999999886542                125567889999999999999998721   


Q ss_pred             -C-CCCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHH
Q psy3752         721 -G-NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCR  791 (1012)
Q Consensus       721 -g-~~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~  791 (1012)
                       | .-+.++|.+|+.+|..++||+|+++|||||||++       .+++++++..++..       +|+|.+|+.||..|.
T Consensus       173 ~g~~~nl~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~d-------~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA~~A~  245 (282)
T d2btya1         173 DGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-------GKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAV  245 (282)
T ss_dssp             SSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-------TEECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHH
T ss_pred             cceeeeccccchhHHHhhhcCCceeEEeccccceecC-------ccccccCCHHHHHHHHHcCCcCchHHHHHHHHHHHH
Confidence             1 1134599999999999999999999999999953       45677777766543       688999999999999


Q ss_pred             hCCCc-EEEEecCCchhHHH-HhcCCCcceEEEEe
Q psy3752         792 DQKLP-IRVFSIIKSGALKR-VIEGKNEGTLVYEI  824 (1012)
Q Consensus       792 ~~gi~-v~I~~g~~~~~i~~-~l~Ge~~GT~I~~~  824 (1012)
                      ++|++ |+|+||+.|+.|.. ++.++.+||+|++.
T Consensus       246 ~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~~  280 (282)
T d2btya1         246 RGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL  280 (282)
T ss_dssp             HTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred             HcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEeC
Confidence            99996 99999999998875 56788899999864

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1e-22  Score=221.33  Aligned_cols=155  Identities=25%  Similarity=0.289  Sum_probs=125.4

Q ss_pred             HHHHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh-------------hhhcchHHHHHHhhCCCEEEEcCcCCCC-
Q psy3752         660 YMGMLATI--INSLALFDILNKSGIISHVMSAISIEKF-------------LESYIPLNAIKYLEEGKVVIFAGGIGNP-  723 (1012)
Q Consensus       660 ~~~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~-------------~~~~~~~~l~~~L~~g~VPVi~G~~g~~-  723 (1012)
                      ...+++.|  +++.+|+.+|+..|+++..+++.++...             ........+...+.. .|||++||.|.. 
T Consensus       109 ~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~i~Vv~GFig~~~  187 (292)
T d2j0wa1         109 TDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNE-GLVITQGFIGSEN  187 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHHH-SEEEEESSEEECT
T ss_pred             HHHHHhhhHHHhHHHHHHHHHhcCCCccccchhheeecCCccccccchhhhhhhhhhhhhhhhhcc-ccccccccccccc
Confidence            34445555  4788999999999999999998876211             011112223333444 489999988732 


Q ss_pred             -C-Cc------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHh
Q psy3752         724 -F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRD  792 (1012)
Q Consensus       724 -~-~s------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~  792 (1012)
                       + .+      +|++|+.+|..|+|+.+.|||||||||++||+..|+|+.|++++|+|+.+   +|++++|+.|+.+|.+
T Consensus       188 ~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP~~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~  267 (292)
T d2j0wa1         188 KGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVR  267 (292)
T ss_dssp             TSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHH
T ss_pred             CCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechhhcCCCceEcceeCHHHHHHHHhCCccccCHHHHHHHHH
Confidence             2 22      99999999999999999999999999999999999999999999999988   7999999999999999


Q ss_pred             CCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         793 QKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       793 ~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      +|||++|.|.++|         +..||+|+.+
T Consensus       268 ~~Ipi~i~nt~~p---------~~~GT~I~~~  290 (292)
T d2j0wa1         268 SDIPVFVGSSKDP---------RAGGTLVCNK  290 (292)
T ss_dssp             HTCCEEEEESSCT---------TSCCEEEESC
T ss_pred             cCCcEEEeeCCCC---------CCCCCeEecC
Confidence            9999999999988         4579999854

>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.87  E-value=1.8e-22  Score=185.22  Aligned_cols=95  Identities=26%  Similarity=0.366  Sum_probs=83.7

Q ss_pred             cccccCceEEEEEeCCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH--------------hhcccccCC
Q psy3752         439 NRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ--------------LNNLKIKNN  504 (1012)
Q Consensus       439 ~r~~~eG~v~~~~~~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~--------------l~q~~~~~~  504 (1012)
                      ||.|+||+|++|++++.||||||||||||||||+.|++|+++||+++++..|...+.              ..++...++
T Consensus         1 GR~a~EG~I~i~~~~~~~~ivElNcETDFVArn~~F~~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (111)
T d1xb2b2           1 GRKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPAGPER   80 (111)
T ss_dssp             TSCCCEEEEEEEEETTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBCCSSS
T ss_pred             CccccccEEEEEeCCCeEEEEEEecccchhhccHHHHHHHHHHHHHHHHcCcchHHHHhhhhhhhhcccchhhhhccccC
Confidence            799999999999999999999999999999999999999999999999876543221              234455567


Q ss_pred             CccHHHHHHHHHHHhCCceEEEEEEEeec
Q psy3752         505 LLTVDEKCKELISRIGENIKIRRFKLFKT  533 (1012)
Q Consensus       505 ~~tv~~~~~~~~~~~geni~v~rf~~~~~  533 (1012)
                      +.||+|.+.++++++||||+|+||.+|+.
T Consensus        81 ~~tv~d~i~~~ia~iGEnI~lrR~~~~~~  109 (111)
T d1xb2b2          81 EGSLKDQLALAIGKLGENMILKRAAWVKV  109 (111)
T ss_dssp             CSBHHHHHHHHHHHHCSCEEEEEEEEEEC
T ss_pred             CCcHHHHHHHHhhhhCCCEEEEEEEEEec
Confidence            78999999999999999999999999975

>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.86  E-value=3.1e-22  Score=220.77  Aligned_cols=224  Identities=20%  Similarity=0.167  Sum_probs=152.7

Q ss_pred             HHHHHHHhhhhhhhcCCCCccc----chhhHhHHHHHHHHHhCCCeEEEEEccchHhhhhcc------cccCCCcchHH-
Q psy3752         591 LAVLKAQQLGEALMKGDAYNIN----SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN------KIQNIDRSTAD-  659 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id----~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~~~~~~~------~~~~~~~~~~~-  659 (1012)
                      ++|+|   .|++.++......+    ...+++++++|+.|+..|+++|||||||...-....      ...+..+.+.+ 
T Consensus         3 rIVIK---iGgs~l~~~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vVlVhGGgpqi~~~l~~~~~~~~~~~~~~~~~~~   79 (313)
T d1e19a_           3 RVVIA---LGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDV   79 (313)
T ss_dssp             EEEEE---CCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_pred             EEEEE---eChHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCCccccCCCcccccHH
Confidence            46788   45444444333333    367999999999999999999999999833222111      11111122222 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhcCCceeEeehhc--------hh-----------------------------------
Q psy3752         660 ---YMGMLATIINSLALFDILNKSGIISHVMSAIS--------IE-----------------------------------  693 (1012)
Q Consensus       660 ---~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~--------~~-----------------------------------  693 (1012)
                         .......+.....+...+...+++....+...        ..                                   
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (313)
T d1e19a_          80 AGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRG  159 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHhhHHHHhhhhhhHHHHhhccCceeehhhhhhHHHHHHhhcCceeeeccCcc
Confidence               22222223344455566777776653322111        00                                   


Q ss_pred             --------hhhhhcchHHHHHHhhCCCEEEEcCcC------------CC-CCCccHHHHHHHHHhcCCceEEeeeccccc
Q psy3752         694 --------KFLESYIPLNAIKYLEEGKVVIFAGGI------------GN-PFFTTDTTAALRAAEIKAEIILKATKVDGI  752 (1012)
Q Consensus       694 --------~~~~~~~~~~l~~~L~~g~VPVi~G~~------------g~-~~~s~D~~Aa~lA~~l~Ad~liilTDVdGV  752 (1012)
                              ...+.++...+..++++|.+|++++..            |. -++++|++|+.+|.+++||+|+|+||||||
T Consensus       160 ~~~~v~~~~~~~~v~~~~i~~~~~~~~i~vl~~~~~~~v~~~~~~~~G~~~ninaD~lAa~vA~~l~Ad~LIlLTdv~Gv  239 (313)
T d1e19a_         160 WRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA  239 (313)
T ss_dssp             EEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             ceeeccCCCceeEecccceeeccccchhhhhccCCCCCccccCCCcCceEEecchhHHHHHHHHHHHHHHHHhccCCcce
Confidence                    001225677889999999999987621            21 245699999999999999999999999999


Q ss_pred             cccCCcCCcCcccccccCHHHHHh--------hhcCcccHHHHHHHHhCCC-cEEEEecCCchhHHHHhcCCCcceEEEE
Q psy3752         753 YNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVYE  823 (1012)
Q Consensus       753 y~~dP~~~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  823 (1012)
                      |+++|+  +++++|++++.+++.+        .|||.+|+.||..|.+.|+ +++|.+   ++.+.+++.|+ .||+|.|
T Consensus       240 ~~~~~~--~~~~~i~~l~~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~---~~~i~~~l~g~-~GT~i~P  313 (313)
T d1e19a_         240 ALYYGT--EKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH---LEKAVEALEGK-TGTQVLP  313 (313)
T ss_dssp             EETTTS--TTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEE---GGGHHHHHTTS-SSEEEEC
T ss_pred             eccCCC--cccceeeeCCHHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECC---hHHHHHHHCCC-CCCEEcC
Confidence            998775  6789999999877755        5889999999988777776 566654   56799999996 7999986

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.86  E-value=1.9e-21  Score=211.79  Aligned_cols=154  Identities=23%  Similarity=0.279  Sum_probs=129.3

Q ss_pred             HHHHHH--HHHHHHHHHHHhcCCceeEeehhchhhh---------hh-hcchHHHHHHhhCCCEEEEcCcCCCC--C-Cc
Q psy3752         662 GMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LE-SYIPLNAIKYLEEGKVVIFAGGIGNP--F-FT  726 (1012)
Q Consensus       662 ~~~~~~--~~~~~l~~~l~~~gi~a~~l~~~~~~~~---------~~-~~~~~~l~~~L~~g~VPVi~G~~g~~--~-~s  726 (1012)
                      .+++.|  +++.+|+.+|+..|+++..+.+.+....         .. ....+.+...+..|.|||++||.|..  + .+
T Consensus       123 ~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~v~Vv~GFig~~~~G~~t  202 (302)
T d2hmfa1         123 YILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYIT  202 (302)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEECTTCCEE
T ss_pred             HHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccCCccchhhhhhhhhHHHHHHHHhcCCeEEeecccccCCCCCEE
Confidence            344444  4788898899999999999988775211         11 11235677788899999999988732  2 11


Q ss_pred             ------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHHhCCCcE
Q psy3752         727 ------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI  797 (1012)
Q Consensus       727 ------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~~~gi~v  797 (1012)
                            +|++|+.+|..|+|+.+.+||||||||++||+.+|+|+.++.++|+|+.+   .|++++++.|+.+|.++|+|+
T Consensus       203 tLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~~~dP~~~~~a~~~~~~~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i  282 (302)
T d2hmfa1         203 TLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPI  282 (302)
T ss_dssp             ECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHTTCCE
T ss_pred             EEeccCcccHHHHHHHHhccHHHHHHhccchhccchhhcCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHcCCCE
Confidence                  99999999999999999999999999999999999999999999999987   799999999999999999999


Q ss_pred             EEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         798 RVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       798 ~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      +|.|.++|         +.+||+|+++
T Consensus       283 ~v~~~~~~---------~~~gT~i~~~  300 (302)
T d2hmfa1         283 LVKNTFEP---------ESEGTLITND  300 (302)
T ss_dssp             EEEETTST---------TSCCEEEESC
T ss_pred             EEeeCCCC---------CCCCCEEcCC
Confidence            99999887         4689999854

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=2.2e-21  Score=211.42  Aligned_cols=157  Identities=20%  Similarity=0.270  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhhh--------------hhhcchHHHHHHhhCCCEEEEcCcCCC--
Q psy3752         659 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF--------------LESYIPLNAIKYLEEGKVVIFAGGIGN--  722 (1012)
Q Consensus       659 ~~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~~--------------~~~~~~~~l~~~L~~g~VPVi~G~~g~--  722 (1012)
                      |.+...+..+++.+++.+|+..|+++..+.+.+...+              ........+...++.+.|||++||.|.  
T Consensus       117 D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~v~vv~Gfig~~~  196 (304)
T d2cdqa1         117 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGW  196 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEET
T ss_pred             HHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccccccccchhhhHHHHhhhhhccCcEEEeeccccccC
Confidence            4443334445788999999999999999988775211              111122345556789999999998763  


Q ss_pred             -CCCc-------cHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh---hhcCcccHHHHHHHH
Q psy3752         723 -PFFT-------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR  791 (1012)
Q Consensus       723 -~~~s-------~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~---~G~~v~~~~aa~~a~  791 (1012)
                       .+..       +|++|+.+|.+|+|+.+.|||||||||++||+..|+|+.|++++|+|+.+   +|++++|+.|+.++.
T Consensus       197 ~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a~~i~~lsy~EA~ela~~GakvlHp~ti~p~~  276 (304)
T d2cdqa1         197 KTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAR  276 (304)
T ss_dssp             TTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred             cCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccccCCceEcCccCHHHHHHHHhCCCcccCHHHHHHHH
Confidence             2222       99999999999999999999999999999999999999999999999988   799999999999999


Q ss_pred             hCCCcEEEEecCCchhHHHHhcCCCcceEEEEe
Q psy3752         792 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  824 (1012)
Q Consensus       792 ~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  824 (1012)
                      +.+||++|.|.++|         +..||+|+..
T Consensus       277 ~~~Ipi~i~nt~~p---------~~~GT~I~~~  300 (304)
T d2cdqa1         277 EGEIPVRVKNSYNP---------KAPGTIITKT  300 (304)
T ss_dssp             HHTCCEEEEETTST---------TSCCEEEESC
T ss_pred             HCCCcEEEecCCCC---------CCCCCEEeCC
Confidence            99999999999988         4679999854

>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.4e-20  Score=162.16  Aligned_cols=84  Identities=36%  Similarity=0.602  Sum_probs=78.8

Q ss_pred             cccCceEEEEEeCCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhHhhcccccCCCccHHHHHHHHHHHhC
Q psy3752         441 NAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIG  520 (1012)
Q Consensus       441 ~~~eG~v~~~~~~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~l~q~~~~~~~~tv~~~~~~~~~~~g  520 (1012)
                      +++||+|++|++++.|+|||+||||||||||++|++|++++++++++.++..++.+.        .|++|.+.++++++|
T Consensus         1 vA~EG~I~~~~~~~~~~ivEvncETDFVAkne~F~~l~~~i~~~~~~~~~~~~~~~~--------~~v~e~~~~~iakiG   72 (85)
T d1efub4           1 VAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK--------AQFEEERVALVAKIG   72 (85)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCCCHHHHH--------HHHHHHHHHHHHHHC
T ss_pred             CccceEEEEEEcCCeEEEEEEeccCcchhcchHHHHHHHHHHHHHHhcCcccHHHHh--------chHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999999999999998887764        389999999999999


Q ss_pred             CceEEEEEEEee
Q psy3752         521 ENIKIRRFKLFK  532 (1012)
Q Consensus       521 eni~v~rf~~~~  532 (1012)
                      |||+|+||.+++
T Consensus        73 EnI~irR~~~~e   84 (85)
T d1efub4          73 ENINIRRVAALE   84 (85)
T ss_dssp             SCCEEEEEEEEE
T ss_pred             CCEEEeEEEEee
Confidence            999999999986

>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=5.8e-21  Score=181.95  Aligned_cols=93  Identities=41%  Similarity=0.682  Sum_probs=88.1

Q ss_pred             ccCceEEEEEe--CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH------------------------
Q psy3752         442 AKDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ------------------------  495 (1012)
Q Consensus       442 ~~eG~v~~~~~--~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~------------------------  495 (1012)
                      +.||+|++|+|  +++||||+++|+|||+++|+.|++|+++|||||||++|.+++.                        
T Consensus         1 a~eG~v~~YiH~~gkigvlv~l~~~~d~~~~~~~~~~~ak~iAmhiaA~~P~~i~~~~v~~~~i~~E~ei~~~~~~~~gK   80 (142)
T d1tfea_           1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGK   80 (142)
T ss_dssp             CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEEEEcCCCcEEEEEEEEeccchhhhhhHHHHHHHHHHhhhhhcCcccCChhHCCHHHHHHHHHHHHHHhhcccc
Confidence            46899999999  6999999999999999999999999999999999999987553                        


Q ss_pred             ----------------------hhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecC
Q psy3752         496 ----------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTN  534 (1012)
Q Consensus       496 ----------------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g  534 (1012)
                                            |+|+|++|+++||+|++++..+++|+||+|++|.||++|
T Consensus        81 P~~i~ekIv~Gk~~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~~~~~g~~i~i~~F~R~~vG  141 (142)
T d1tfea_          81 PQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELG  141 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCcccCCCccHHHHHHHHHHhcCCCcEEEEEEEEEec
Confidence                                  789999999999999999999999999999999999987

>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Enterococcus faecium [TaxId: 1352]

Probab=99.81  E-value=1.5e-20  Score=206.75  Aligned_cols=225  Identities=16%  Similarity=0.081  Sum_probs=147.2

Q ss_pred             HHHHHHHhhhhhhhcC-CCCcccchhhHhHHHHHHHHHhCCCeEEEEEccchH----hhhhcccccCC-CcchHHHHHHH
Q psy3752         591 LAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI----CRGISNKIQNI-DRSTADYMGML  664 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~-~~~~id~~~i~~ia~~I~~l~~~G~~vvIVhGGG~~----~~~~~~~~~~~-~~~~~~~~~~~  664 (1012)
                      ++|+|+  +|++++.. ++...+.+.+.+++++|+.|++.|+++|||||||..    +.......... .....+.....
T Consensus         3 ~iVIK~--GGsal~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vViVHGGgpqi~~~l~~~~~~~~~~~~~~~~~~~~~~   80 (307)
T d1b7ba_           3 KMVVAL--GGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTCVAM   80 (307)
T ss_dssp             EEEEEE--CHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTCSSSSCCCCHHHHHHH
T ss_pred             EEEEEE--ChhhhCCCCCCchHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcCCCCcccccccccchHHHH
Confidence            457785  55566543 334456688999999999999999999999999843    32222221111 11111111111


Q ss_pred             HHHHH----HHHHHHHHHhcCCc------------------------eeEeehhchh-----------------------
Q psy3752         665 ATIIN----SLALFDILNKSGII------------------------SHVMSAISIE-----------------------  693 (1012)
Q Consensus       665 ~~~~~----~~~l~~~l~~~gi~------------------------a~~l~~~~~~-----------------------  693 (1012)
                      .....    ............++                        ++++.+.+..                       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (307)
T d1b7ba_          81 TQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKVV  160 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCEEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHTTTCCEEEETTTEEEEEE
T ss_pred             HHHHHHHHHhhhhHHHHhhcccchhhhhhhhhhhHHHHHHHHHccCcceeeecccchHHHHHHhhcceeccccccceeec
Confidence            11111    11111112222222                        2222221110                       


Q ss_pred             ---hhhhhcchHHHHHHhhCCCEEEEcCc----------CCC-CCCccHHHHHHHHHhcCCceEEeeeccccccccCCcC
Q psy3752         694 ---KFLESYIPLNAIKYLEEGKVVIFAGG----------IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNK  759 (1012)
Q Consensus       694 ---~~~~~~~~~~l~~~L~~g~VPVi~G~----------~g~-~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~  759 (1012)
                         ......+...+...++.+.+|++++.          .|. -++++|++|+.+|.+++||+|+|+|||||||+++|+ 
T Consensus       161 ~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ninaD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~-  239 (307)
T d1b7ba_         161 PSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK-  239 (307)
T ss_dssp             CCCCEEEETTHHHHHHHHHTTEEEECSGGGCEEEETTTTEECSCCCCHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS-
T ss_pred             CcCceeeeechhhhhhhhhcCceeeccCCccccccccCCCCcEEecchhHHHHHHHHHhhhhheeeccccCceeeCCCc-
Confidence               00122466788888999999987541          111 245699999999999999999999999999999885 


Q ss_pred             CcCcccccccCHHHHHh--------hhcCcccHHHHHHHHhCCC-cEEEEecCCchhHHHHhcCCCcceEE
Q psy3752         760 CLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLV  821 (1012)
Q Consensus       760 ~~~a~~i~~i~~~e~~~--------~G~~v~~~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge~~GT~I  821 (1012)
                       |+.++++.++.+++.+        .|||.+|+.||..|.++|+ .++|+++  ++.+.+++.|+.+||+|
T Consensus       240 -~~~~~i~~l~~~e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~--~~~l~~l~~~~~~GT~I  307 (307)
T d1b7ba_         240 -PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS--LENLGSMSGDEIVGTVV  307 (307)
T ss_dssp             -TTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEEC--HHHHTTCSSCSCEEECC
T ss_pred             -ccccccccCCHHHHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECC--HHHHHHHHcCCCCCCCC
Confidence             6677888888877654        6889999999999999998 4677765  45688889999999986

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=7.4e-19  Score=133.17  Aligned_cols=49  Identities=31%  Similarity=0.331  Sum_probs=47.4

Q ss_pred             hhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccc
Q psy3752         392 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR  440 (1012)
Q Consensus       392 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r  440 (1012)
                      .+||+||++||+||||||+||+++|||+|+|++|||++|.++|.||++|
T Consensus         4 elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr~~G~~kA~Kk~~R   52 (52)
T d1aipc1           4 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADR   52 (52)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHhcCC
Confidence            4789999999999999999999999999999999999999999999987

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.72  E-value=1e-18  Score=134.32  Aligned_cols=52  Identities=31%  Similarity=0.346  Sum_probs=49.6

Q ss_pred             hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhcccc
Q psy3752         390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRN  441 (1012)
Q Consensus       390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r~  441 (1012)
                      +..++|+||++||+||||||+||+++|||+|+|++|||++|.++|.||++|+
T Consensus         4 s~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~LrkkG~a~a~kKa~Rl   55 (56)
T d1xb2b1           4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARL   55 (56)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4568999999999999999999999999999999999999999999999986

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.7e-18  Score=132.19  Aligned_cols=51  Identities=41%  Similarity=0.460  Sum_probs=48.2

Q ss_pred             hhhhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhhhhhhhhccc
Q psy3752         390 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR  440 (1012)
Q Consensus       390 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~~~a~k~~~r  440 (1012)
                      +...+|+||++||+||||||+||++++||+|+|++|||++|.++|.||+|.
T Consensus         4 s~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr~kG~~~A~Kk~Gn   54 (54)
T d1efub3           4 TASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGN   54 (54)
T ss_dssp             CHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHhcCC
Confidence            456899999999999999999999999999999999999999999999874

>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.4e-17  Score=175.72  Aligned_cols=216  Identities=17%  Similarity=0.164  Sum_probs=155.4

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhHhHHHHHHHHHhCCCe-EEEEEccchHhhhhcccc---cC----C---CcchHH
Q psy3752         591 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIE-LAIVIGGGNICRGISNKI---QN----I---DRSTAD  659 (1012)
Q Consensus       591 i~v~K~~~~g~~~~~~~~~~id~~~i~~ia~~I~~l~~~G~~-vvIVhGGG~~~~~~~~~~---~~----~---~~~~~~  659 (1012)
                      ++|+|   .|+++++      +++.+.+++++|+.+++.|++ +|||||||.+...+....   ..    .   +.....
T Consensus         4 ~IVIK---iGgs~lt------~~~~~~~~~~~ia~l~~~g~~~vvvvhG~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   74 (258)
T d1gs5a_           4 PLIIK---LGGVLLD------SEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQID   74 (258)
T ss_dssp             CEEEE---ECGGGGG------CHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHH
T ss_pred             CEEEE---ECchhcc------CHHHHHHHHHHHHHHHHCCCceEEEECCCchhhhcchhhhccccccccccchhhHHHHH
Confidence            45677   4444443      456799999999999999977 789999985544332221   11    1   223344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCceeEeehhchhh--------------hhhhcchHHHHHHhhCCCEEEEcCcC-C-C-
Q psy3752         660 YMGMLATIINSLALFDILNKSGIISHVMSAISIEK--------------FLESYIPLNAIKYLEEGKVVIFAGGI-G-N-  722 (1012)
Q Consensus       660 ~~~~~~~~~~~~~l~~~l~~~gi~a~~l~~~~~~~--------------~~~~~~~~~l~~~L~~g~VPVi~G~~-g-~-  722 (1012)
                      ....+..+.....+...+...|..+...+......              .....+...+...++.+.+|++.+.. + . 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~v~~~~~~~~~~  154 (258)
T d1gs5a_          75 IITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEG  154 (258)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhccCccccccccccccccccccccccccccccccccccchHHHHHhccccccccccccccCC
Confidence            44444455566667777888899888777654311              13345677889999999999998721 1 1 


Q ss_pred             --CCCccHHHHHHHHHhcCCceEEeeeccccccccCCcCCcCcccccccCHHHHHh-------hhcCcccHHHHHHHHhC
Q psy3752         723 --PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQ  793 (1012)
Q Consensus       723 --~~~s~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~i~~~e~~~-------~G~~v~~~~aa~~a~~~  793 (1012)
                        -+..+|.+|+.+|..++|+.+ ++||++|+|+.++...+      .....+...       +|||.+|+.||..|.++
T Consensus       155 ~~~~~~~~~~a~~~a~~l~a~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~  227 (258)
T d1gs5a_         155 QLMNVNADQAATALAATLGADLI-LLSDVSGILDGKGQRIA------EMTAAKAEQLIEQGIITDGMIVKVNAALDAART  227 (258)
T ss_dssp             CEEECCHHHHHHHHHHHHTCEEE-EEESSSSCBCTTSCBCC------EECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHH
T ss_pred             cEEEechhhhhhhHHHHHHhhhh-hhccccccccccccccc------ccchHHHHHHHhCCcccchHHHHHHHHHHHHHc
Confidence              123499999999999999975 57899999987765433      233322221       68999999999999999


Q ss_pred             CCc-EEEEecCCchhHHHHhcCCCcceEEE
Q psy3752         794 KLP-IRVFSIIKSGALKRVIEGKNEGTLVY  822 (1012)
Q Consensus       794 gi~-v~I~~g~~~~~i~~~l~Ge~~GT~I~  822 (1012)
                      |++ |+|+||+.|+.|.++++|+.+||+|.
T Consensus       228 Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~  257 (258)
T d1gs5a_         228 LGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             HTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             CCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence            985 89999999999999999999999985

>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.59  E-value=8.8e-16  Score=138.82  Aligned_cols=82  Identities=12%  Similarity=0.284  Sum_probs=71.6

Q ss_pred             ceEEEEEe-------------CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH-------------hhc
Q psy3752         445 GVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ-------------LNN  498 (1012)
Q Consensus       445 G~v~~~~~-------------~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~-------------l~q  498 (1012)
                      +.|++|+|             ||+||||+++++.+    +..+.+|+++|||||||++|.++++             |+|
T Consensus         2 ~~igsYiHg~~~~~~~~~~~lGkig~lv~~~~~~~----~~~~~~l~k~iAmhIaA~~P~~i~~~~~~~~~~~E~~Ll~Q   77 (109)
T d1xb2b3           2 FYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL----KANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQ   77 (109)
T ss_dssp             EEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC----GGGCHHHHHHHHHHHHHHCCSBCCCTTSCCCGGGCCBGGGS
T ss_pred             CEEEEEeCCCcccccccccccccEEEEEEEccCCC----ccCHHHHHHHHHHHHHhcCCcccCccccccccchhheeccc
Confidence            57999999             48999999998743    3456789999999999999987654             889


Q ss_pred             ccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCe
Q psy3752         499 LKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNN  536 (1012)
Q Consensus       499 ~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~  536 (1012)
                      +|++|+++||++++++      +|++|.+|+||++|||
T Consensus        78 ~fvkD~~~tV~~~l~~------~~i~v~~F~Rf~vGEG  109 (109)
T d1xb2b3          78 PYLLDPSITLGQYVQP------HGVSVVDFVRFECGEG  109 (109)
T ss_dssp             BCTTCTTSBHHHHHGG------GTCEEEEEEEEETTCC
T ss_pred             ccccCCccCHHHHHHH------CCCEEEEEEEEEecCC
Confidence            9999999999998875      5799999999999987

>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=7.6e-16  Score=144.64  Aligned_cols=61  Identities=39%  Similarity=0.627  Sum_probs=58.1

Q ss_pred             eeeeeccCCceEEEEEecCCchHHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHH
Q psy3752         536 NLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA  596 (1012)
Q Consensus       536 ~i~~y~H~~~~g~~v~~~~~~~~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~  596 (1012)
                      .||+|+|+|||||||.+++.+++++++||||||||+|.+++++++|++++++|++++..++
T Consensus         2 vi~sYiH~gkigvlV~~~~~~~e~ak~iAMHIAA~~P~~l~~~~vp~~~i~kE~~i~~~q~   62 (143)
T d1efub2           2 VLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIA   62 (143)
T ss_dssp             EEEEEEETTTEEEEEEEESCCHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCEEEEEEEecCccHHHHHHHHHHHhccCCcccccccCCHHHHHHHHHHhHhhh
Confidence            5899999999999999999999999999999999999999999999999999999877775

>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.1e-15  Score=141.54  Aligned_cols=77  Identities=21%  Similarity=0.319  Sum_probs=68.6

Q ss_pred             eEEEEEe-CCEEEEEEEecCchhhhcchHHHHHHHHHHHHHHhcCCCChhH-----------------------------
Q psy3752         446 VIAIYIS-EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ-----------------------------  495 (1012)
Q Consensus       446 ~v~~~~~-~~~~~lve~~~etdfva~~~~f~~l~~~ia~~iaa~~p~~~~~-----------------------------  495 (1012)
                      +|++|+| ||+||||+++|+++         +|+++|||||||++|.+++.                             
T Consensus         2 vi~sYiH~gkigvlV~~~~~~~---------e~ak~iAMHIAA~~P~~l~~~~vp~~~i~kE~~i~~~q~~~~gKPe~i~   72 (143)
T d1efub2           2 VLGSYQHGARIGVLVAAKGADE---------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIA   72 (143)
T ss_dssp             EEEEEEETTTEEEEEEEESCCH---------HHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             eEEEEecCCEEEEEEEecCccH---------HHHHHHHHHHhccCCcccccccCCHHHHHHHHHHhHhhhhcccchHHHH
Confidence            5899999 79999999999753         68999999999999987544                             


Q ss_pred             -----------------hhcccccCCCccHHHHHHHHHHHhCCceEEEEEEEeecCCee
Q psy3752         496 -----------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL  537 (1012)
Q Consensus       496 -----------------l~q~~~~~~~~tv~~~~~~~~~~~geni~v~rf~~~~~g~~i  537 (1012)
                                       |+|+|++|+++||++++++      .|++|.+|+||++||||
T Consensus        73 eKIveGkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~~------~~~~v~~FvRfevGEGi  125 (143)
T d1efub2          73 EKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKE------HNAEVTGFIRFEVGEGI  125 (143)
T ss_dssp             HHHHHHHHHHHHHHHBTTTSEETTEEEEEHHHHHHT------TTCEEEEEEEEETTTTS
T ss_pred             HHHHHHHHHHHHHhhhhcccccccCCceeHHHHHHh------CCCEEEEEEEEEecCce
Confidence                             7899999999999998875      46899999999999987

>d1f2ea1 a.45.1.1 (A:81-201) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=99.50  E-value=1.6e-14  Score=135.12  Aligned_cols=115  Identities=24%  Similarity=0.267  Sum_probs=96.3

Q ss_pred             CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHH
Q psy3752          54 QLMSS-DPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVI  132 (1012)
Q Consensus        54 ~L~p~-~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l  132 (1012)
                      +|.|. ++.+|+++++|+.++...+.+.+.......  ......+...+.+.+.|..+|++|++++||+|++||+|||++
T Consensus         1 GL~P~~g~~~Ra~~~~wl~f~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~TiaDi~~   78 (121)
T d1f2ea1           1 GLAPAEGSLDRYRLLSRLSFLGSEFHKAFVPLFAPA--TSDEAKAAAAESVKNHLAALDKELAGRDHYAGNAFSVADIYL   78 (121)
T ss_dssp             CSSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHCSS--CCHHHHHHHHHHHHHHHHHHHHHHHSCSSSSSSSCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcchHHHHHHHHCcC--CCHHHHHHHHHHHHHHHHHHHHHHccCCCchhcCCCHHHHHH
Confidence            37785 789999999999998888876654443322  333445677788999999999999999999999999999999


Q ss_pred             HHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         133 APLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       133 ~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ++.+.|....+.++. .||+|.+|+++|.+||+|++++.
T Consensus        79 ~~~~~~~~~~~~~~~-~~p~l~~w~~~~~~rpa~~~al~  116 (121)
T d1f2ea1          79 YVMLGWPAYVGIDMA-AYPALGAYAGKIAQRPAVGAALK  116 (121)
T ss_dssp             HHHTTSGGGGTCCGG-GCHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHHcCCChh-hCHHHHHHHHHHHCCHHHHHHHH
Confidence            999999888887765 59999999999999999998765

>d1n2aa1 a.45.1.1 (A:81-201) Class beta GST {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.4e-14  Score=133.98  Aligned_cols=114  Identities=15%  Similarity=0.231  Sum_probs=94.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP  134 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~  134 (1012)
                      |.|.++.+|+++++|+.++.+.+.+.+........  ..+..+...+.+.+.|+.+|++|++++|++|+++|+||+++++
T Consensus         3 l~P~~~~~Ra~~~~wl~~~~~~l~~~~~~~f~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~s~ADi~l~~   80 (121)
T d1n2aa1           3 LAPVNSISRYKTIEWLNYIATELHKGFTPLFRPDT--PEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFT   80 (121)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHTHHHHHHHHCSSS--CGGGHHHHHHHHHHHHHHHHHHTTTSSCSSSSSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhchHHHHHHHHCcCC--CHHHHHHHHHHHHHHHHHHHHHHccCCCcccccccHHHHHHHH
Confidence            56788999999999999988877665444333322  2233355678899999999999999999999999999999999


Q ss_pred             HhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         135 LLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       135 ~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ++.|+...+.++ +.||+|.+|+++|.+||+|++++.
T Consensus        81 ~~~~~~~~~~~~-~~~p~l~~w~~ri~~rpav~~~l~  116 (121)
T d1n2aa1          81 VLRWAYAVKLNL-EGLEHIAAFMQRMAERPEVQDALS  116 (121)
T ss_dssp             HHHHHHHTTCCC-TTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHcCCCc-ccCHHHHHHHHHHHCCHHHHHHHH
Confidence            999998888776 569999999999999999998765

>d1pmta1 a.45.1.1 (A:81-201) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=99.48  E-value=2e-14  Score=134.53  Aligned_cols=114  Identities=18%  Similarity=0.236  Sum_probs=94.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP  134 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~  134 (1012)
                      |.|.++.+|+++++|+.+....+++.+........  .....+.....+.+.+..+|++|++++|++|+++|+||+++++
T Consensus         3 l~p~~~~~Ra~~~~wl~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~   80 (121)
T d1pmta1           3 IAPPKALERYHQIEWLNFLASEVHKGYSPLFSSDT--PESYLPVVKNKLKSKFVYINDVLSKQKCVCGDHFTVADAYLFT   80 (121)
T ss_dssp             SCCTTSHHHHHHHHHHHHHHHTTHHHHGGGGCSSS--CTTTHHHHHHHHHHHHHHHHHHHTTSSBTTBSSCCHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHhchHHHHHHHHCcCC--CHHHHHHHHHHHHHHHHHHHHHHccCCcccccCcCHHHHHHHH
Confidence            56789999999999998888777665544333222  2233456678889999999999999999999999999999999


Q ss_pred             HhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         135 LLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       135 ~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      .+.|....+.++ +.||+|.+|+++|.+||+|++++.
T Consensus        81 ~~~~~~~~~~~~-~~~p~l~~w~~r~~~rPa~~~al~  116 (121)
T d1pmta1          81 LSQWAPHVALDL-TDLSHLQDYLARIAQRPNVHSALV  116 (121)
T ss_dssp             HHSSTGGGTCCC-TTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHhcccc-ccCHHHHHHHHHHHcCHHHHHHHH
Confidence            999998888775 459999999999999999998776

>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=99.47  E-value=2.7e-14  Score=135.12  Aligned_cols=117  Identities=15%  Similarity=0.071  Sum_probs=94.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------hhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYM-------LENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSM  127 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~Tl  127 (1012)
                      |+|.|+.+|+.+++|+.+....+.+....       .+..+...+.+..+.....+.+.|+.+|.+|++++||+|+++|+
T Consensus         3 L~~~d~~erA~v~~Wl~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~Tl   82 (129)
T d1axda1           3 LREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSL   82 (129)
T ss_dssp             GTTTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSSSCCH
T ss_pred             CCCCCHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHccccccccCcccc
Confidence            67899999999999987665554433221       12223445566778888999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhcccc-ccCCCchhHHHHHHHhcCCccccccc
Q psy3752         128 LDVVIAPLLWRLDYYGIN-LSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       128 ADi~l~~~L~~l~~~~~~-l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      |||++++.+.++...+.. ....||+|.+|+++|.+||+|++++.
T Consensus        83 ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~rPs~k~~~~  127 (129)
T d1axda1          83 ADLNHVSVTLCLFATPYASVLDAYPHVKAWWSGLMERPSVQKVAA  127 (129)
T ss_dssp             HHHTTHHHHHHHTTSGGGGGGGGCHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcccccchhhCHHHHHHHHHHHcCHHHHHHHh
Confidence            999999999988766543 34669999999999999999998654

>d1gwca1 a.45.1.1 (A:87-224) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=99.45  E-value=8.5e-14  Score=132.96  Aligned_cols=123  Identities=17%  Similarity=0.214  Sum_probs=96.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERN-KTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIA  133 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~  133 (1012)
                      |+|.||.+|++++.|+.+++..+.+.......... ....+..+.....+...+..|++.|.+++|++|++||+||++++
T Consensus         1 LlP~Dp~~RA~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~l~Gd~~slaDi~l~   80 (138)
T d1gwca1           1 LLPADPYERAIARFWVAYVDDKLVAPWRQWLRGKTEEEKSEGKKQAFAAVGVLEGALRECSKGGGFFGGDGVGLVDVALG   80 (138)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCBTTBTSCCHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHhHhhHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeccCCCcchhhHHH
Confidence            78999999999999988888777666554433222 22334456677788888899999999999999999999999999


Q ss_pred             HHhhhhhhc----ccc--ccCCCchhHHHHHHHhcCCccccccchhhhhh
Q psy3752         134 PLLWRLDYY----GIN--LSKSASPLIKYAERIFSRPSYMESLTPAEKIM  177 (1012)
Q Consensus       134 ~~L~~l~~~----~~~--l~~~~P~L~aw~~ri~~rp~~~~~lt~~~~l~  177 (1012)
                      +++.++...    +.+  ..+.||+|.+|+++|.+||+|++++++-++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~rPav~~~~p~~e~~~  130 (138)
T d1gwca1          81 GVLSWMKVTEALSGDKIFDAAKTPLLAAWVERFIELDAAKAALPDVGRLL  130 (138)
T ss_dssp             TTHHHHHHHHHHHSCCTTCTTTCHHHHHHHHHHHHSHHHHHHSCCHHHHH
T ss_pred             HHHHHHHHHHHHcCcchhhHhhHHHHHHHHHHHHcCHHHHHHCCCHHHHH
Confidence            999887532    333  34669999999999999999999887544443

>d1ljra1 a.45.1.1 (A:80-244) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-13  Score=135.59  Aligned_cols=112  Identities=16%  Similarity=0.087  Sum_probs=90.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH-------HHHHhhhccccccHHHHHHHHHHHHHHHHHHHh-cccCCCcccCCCcC
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFI-------HLYMLENERNKTSIKGYKRAREEIRDRLITLAP-LFLKNKYMLGDEFS  126 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~-~L~~~~fL~Gd~~T  126 (1012)
                      |||.|+.+|+++++|+.+....+.+       ..+.....+.+...+..+.....+.+.|..||+ +|++++||+|+++|
T Consensus         5 ~YP~D~~~RA~Vd~wl~w~~~~l~~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~~~~l~~le~~~L~~~~yl~Gd~~S   84 (165)
T d1ljra1           5 WYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVT   84 (165)
T ss_dssp             GSCCSHHHHHHHHHHHHHHHHHTTTTSSHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTTSSSSBTTBSSCC
T ss_pred             CCCcCHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCcc
Confidence            8999999999999998776654321       111112223445566677788889999999975 58899999999999


Q ss_pred             HHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCcc
Q psy3752         127 MLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSY  166 (1012)
Q Consensus       127 lADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~  166 (1012)
                      +|||++++.+.++...+.++.+.||+|.+|++||+++++.
T Consensus        85 lADi~~~~~l~~~~~~~~~~~~~yP~l~aW~~r~~a~~~~  124 (165)
T d1ljra1          85 LADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGA  124 (165)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTTTCHHHHHHHHHHHHHHCH
T ss_pred             HhHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHhhhCc
Confidence            9999999999999888888777899999999999998754

>d1fw1a1 a.45.1.1 (A:88-212) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=129.54  Aligned_cols=115  Identities=17%  Similarity=0.236  Sum_probs=87.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVI  132 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l  132 (1012)
                      |+|.|+.+|+++++|+.+....+.+........ ........+.....+.+.+..+|.+|.  +++|++|+++|+||+++
T Consensus         1 LlP~dp~~RA~v~~w~~~~~~~l~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~Gd~~tlADi~l   79 (125)
T d1fw1a1           1 LLPQDPKKRASVRMISDLIAGGIQPLQNLSVLK-QVGEEMQLTWAQNAITCGFNALEQILQSTAGIYCVGDEVTMADLCL   79 (125)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHHTGGGGCHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHBSSSSSBTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCeecCCCcchHHHHH
Confidence            789999999999999888877664322111111 111122223444556777888888874  56899999999999999


Q ss_pred             HHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         133 APLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       133 ~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ++.+.++...+.++. .||+|.+|++||.+||+|+++.+
T Consensus        80 ~~~~~~~~~~~~~~~-~~P~l~aw~~r~~~rPa~~~a~p  117 (125)
T d1fw1a1          80 VPQVANAERFKVDLT-PYPTISSINKRLLVLEAFQVSHP  117 (125)
T ss_dssp             HHHHHHHHHTTCCCT-TCHHHHHHHHHHHTSGGGTTTCG
T ss_pred             HHHHHHHHHhhhhhH-hHHHHHHHHHHHhcCHHHHHhCc
Confidence            999999988887754 59999999999999999998876

>d1aw9a1 a.45.1.1 (A:83-217) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=99.41  E-value=5.5e-14  Score=134.12  Aligned_cols=119  Identities=18%  Similarity=0.230  Sum_probs=94.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-------hhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCC
Q psy3752          52 YPQLMSSDPLMRARARLMLLNFEKEIFIHLYML-------ENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDE  124 (1012)
Q Consensus        52 ~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~  124 (1012)
                      +..|+|.++ +|+++++|+.+....+.+.....       ...+...+.+..+.....+.+.++.+|++|++++||+|++
T Consensus         1 G~~l~P~~~-~rA~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~   79 (135)
T d1aw9a1           1 GTDLLPATA-SAAKLEVWLEVESHHFYPNASPLVFQLLVRPLLGGAPDAAVVDKHAEQLAKVLDVYEAHLARNKYLAGDE   79 (135)
T ss_dssp             SSCSSCTTS-CHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSBTTBSS
T ss_pred             CCCCCCCCH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCcchhhcc
Confidence            356999987 79999999876655443332111       1223445566677888899999999999999999999999


Q ss_pred             cCHHHHHHHHHhhhhhhcccc-ccCCCchhHHHHHHHhcCCccccccc
Q psy3752         125 FSMLDVVIAPLLWRLDYYGIN-LSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       125 ~TlADi~l~~~L~~l~~~~~~-l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +|+|||++++.+.++...+.. ..+.||+|.+|++++.+||+|++++.
T Consensus        80 ~slADi~~~~~l~~~~~~~~~~~~~~~P~l~~w~~~v~~rP~~k~~l~  127 (135)
T d1aw9a1          80 FTLADANHASYLLYLSKTPKAGLVAARPHVKAWWEAIVARPAFQKTVA  127 (135)
T ss_dssp             CCHHHHTTHHHHHHHHTSTTTHHHHTSHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCchhhhhhcHHHHHHHHHHHcCHHHHHHHH
Confidence            999999999999988766543 34679999999999999999998764

>d3gtub1 a.45.1.1 (B:85-224) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.1e-13  Score=129.64  Aligned_cols=133  Identities=11%  Similarity=0.086  Sum_probs=98.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHH
Q psy3752          54 QLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIA  133 (1012)
Q Consensus        54 ~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~  133 (1012)
                      +|+|.++.|++++++|...+.+... .+.......  ......+...+.+...|..+|++|++++||+|+++|+||++++
T Consensus         4 ~L~G~t~~E~a~vd~~~~~v~D~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~Gd~~T~AD~~l~   80 (140)
T d3gtub1           4 NMCGETEEEKIRVDIIENQVMDFRT-QLIRLCYSS--DHEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTY   80 (140)
T ss_dssp             TCSCSSHHHHHHHHHHHHHHHHHHH-HHHHHHHST--THHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHH-HHHHHhhcc--hhhhHHHHHHHHHHHHHHHHHHhcCCCCeeecCCcchhHHHHH
Confidence            4999999999999999777665432 222222211  1222334556778889999999999999999999999999999


Q ss_pred             HHhhhhhhccccccCCCchhHHHHHHHhcCCccccccchhhhhhhcccccCccccccCC
Q psy3752         134 PLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAGVHFGHQTRFWNP  192 (1012)
Q Consensus       134 ~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt~~~~l~~a~~h~Gh~~~~wnp  192 (1012)
                      +++.++...+.+..+.||+|.+|+++|.+||++++.+. ...... ....|+ ..+|+.
T Consensus        81 ~~l~~~~~~~~~~~~~~P~L~~~~~rv~~~P~Ik~yl~-s~~~~~-~p~~~~-~~~~~~  136 (140)
T d3gtub1          81 DILDQNRIFDPKCLDEFPNLKAFMCRFEALEKIAAYLQ-SDQFCK-MPINNK-MAQWGN  136 (140)
T ss_dssp             HHHHHHHHHCGGGGTTCHHHHHHHHHHHTSHHHHHHHH-CHHHHT-CBSSCT-TSSSSC
T ss_pred             HHHHHHHHcCccchhcChHHHHHHHHHHcCHHHHHHHh-ccCCCC-CCCCCC-ccccCC
Confidence            99999877776667789999999999999999998876 344333 222333 444554

>d2a2ra1 a.45.1.1 (A:78-209) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-13  Score=128.70  Aligned_cols=116  Identities=16%  Similarity=0.095  Sum_probs=88.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERN-KTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIA  133 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~  133 (1012)
                      |||+++.+|+++++|+..+.+. +..+........ +......+.....+...+..++.+|++++||+|+++|+||++++
T Consensus         1 Lygk~~~e~a~iD~~~~~~~dl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Gd~~T~AD~~~~   79 (132)
T d2a2ra1           1 LYGKDQQEAALVDMVNDGVEDL-RCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLL   79 (132)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTSCSSTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH-HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeeeceeehhHHHHH
Confidence            7899999999999997766542 222222222111 11122223444556677788889999999999999999999999


Q ss_pred             HHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         134 PLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       134 ~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +.+.++...+.+..+.||+|.+|++||.++|++++.+.
T Consensus        80 ~~l~~~~~~~~~~~~~~P~L~~~~~rv~~~P~ik~yl~  117 (132)
T d2a2ra1          80 DLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLA  117 (132)
T ss_dssp             HHHHHHHHHSTTGGGGCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhCccccccChHHHHHHHHHHHCHHHHHHHc
Confidence            99999988887777789999999999999999998876

>d1jlva1 a.45.1.1 (A:85-207) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=99.41  E-value=1.4e-13  Score=129.06  Aligned_cols=107  Identities=16%  Similarity=0.206  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhh----hccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHH
Q psy3752          58 SDPLMRARARLMLLNFEKEIFIHLYMLE----NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIA  133 (1012)
Q Consensus        58 ~~~~era~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~  133 (1012)
                      +||.+|+++++|+.+....+++.+....    ....+..    +...+.+.+.|+.||++|++++||+|+++|+|||+++
T Consensus         1 kDp~~RA~v~qwL~f~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~le~~L~~~~~l~G~~~S~ADi~l~   76 (123)
T d1jlva1           1 KDPQKRAVVNQRLYFDMGTLYQRFADYYYPQIFAKQPAN----AENEKKMKDAVDFLNTFLDGHKYVAGDSLTIADLTVL   76 (123)
T ss_dssp             CSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCC----HHHHHHHHHHHHHHHHHTSSCSSSSTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCcH----HHHHHHHHHHHHHHHHHHccCCCcCCccchhhHHHHH
Confidence            4899999999998766655554432221    1122222    3345678899999999999999999999999999999


Q ss_pred             HHhhhhhhccccccCCCchhHHHHHHHhcCCccccc
Q psy3752         134 PLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMES  169 (1012)
Q Consensus       134 ~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~  169 (1012)
                      +.+.++...++++. +||+|.+|++||+++|.+.+.
T Consensus        77 ~~l~~~~~~~~~~~-~~p~l~~w~~r~~~~~~~~~~  111 (123)
T d1jlva1          77 ATVSTYDVAGFELA-KYPHVAAWYERTRKEAPGAAI  111 (123)
T ss_dssp             HHHHHHHHTTCCGG-GSHHHHHHHHHHHHHSTTHHH
T ss_pred             HHHHHHHHcCCCcc-cCHHHHHHHHHHHccCchHHH
Confidence            99999988887764 599999999999999877654

>d2cvda1 a.45.1.1 (A:76-199) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9.6e-14  Score=130.10  Aligned_cols=117  Identities=8%  Similarity=0.073  Sum_probs=89.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHH
Q psy3752          54 QLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIA  133 (1012)
Q Consensus        54 ~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~  133 (1012)
                      .|+|.++.+++++++|+..+.+.. ..................+.....+.+.|..||+.|++++|++|+++|+||++++
T Consensus         1 dL~Gk~~~E~a~vd~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~yl~G~~~T~aDi~l~   79 (124)
T d2cvda1           1 DLAGNTEMEQCHVDAIVDTLDDFM-SCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWE   79 (124)
T ss_dssp             TTSCSSHHHHHHHHHHHHHHHHHH-HTSCTTCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCSSSSTTSCCHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHH-hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcCcHHHHHHH
Confidence            388999999999999977666432 2211111111111122223345567889999999999999999999999999999


Q ss_pred             HHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         134 PLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       134 ~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +.+.++...+......||+|.+|++++.++|++++++.
T Consensus        80 ~~l~~~~~~~~~~~~~~P~L~~~~~rv~~~P~vk~yl~  117 (124)
T d2cvda1          80 ICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIK  117 (124)
T ss_dssp             HHHHHHHHHCTTTTTTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHHHhCHHHHHHHH
Confidence            99999988877767789999999999999999988764

>d1k0da1 a.45.1.1 (A:201-351) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=5.7e-14  Score=136.79  Aligned_cols=116  Identities=16%  Similarity=0.211  Sum_probs=73.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHH---Hhhhccc--------------------------------cccHHHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLY---MLENERN--------------------------------KTSIKGYKRA   99 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~---~~~~~~~--------------------------------~~~~~~~~~~   99 (1012)
                      |||.|+.+|+++++|+.+....+.+...   .......                                .......+..
T Consensus         1 L~P~d~~era~v~~WL~~~~~~l~P~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~~~~~~~~   80 (151)
T d1k0da1           1 LWSDDLADQSQINAWLFFQTSGHAPMIGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEMALAERREALVMELDTENAA   80 (151)
T ss_dssp             TSCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhccccccccccccchHHHHHH
Confidence            7899999999999998665554422211   1100000                                1111122334


Q ss_pred             HHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCcccccc
Q psy3752         100 REEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESL  170 (1012)
Q Consensus       100 ~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~l  170 (1012)
                      ...+...+..+|.+|++++||+||++|+|||++++.+.+....+.++.++||+|.+|++||.+||+|++.+
T Consensus        81 ~~~~~~~~~~l~~~L~~~~~l~Gd~~TiADi~~~~~~~~~~~~~~~~~~~~P~v~~w~~r~~~rPav~kal  151 (151)
T d1k0da1          81 AYSAGTTPMSQSRFFDYPVWLVGDKLTIADLAFVPWNNVVDRIGINIKIEFPEVYKWTKHMMRRPAVIKAL  151 (151)
T ss_dssp             --------------CCCCCCSSTTSCCHHHHTTHHHHTTGGGGTCCHHHHCHHHHHHHHHHHTCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcCCCeecCCcccHHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhCHHHHhHC
Confidence            45566778889999999999999999999999999999988888877667999999999999999998753

>d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=99.39  E-value=2.8e-13  Score=130.30  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=87.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNK-TSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVV  131 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~  131 (1012)
                      |||.++.+++++++|...+.+ +...+......... ......+.....+.+.|..+|..|+  +++|++|+++|+||++
T Consensus         1 Lyg~~~~E~A~vd~~~d~~~d-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~~f~~Gd~~T~ADi~   79 (142)
T d1k3ya1           1 LYGKDIKERALIDMYIEGIAD-LGEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIH   79 (142)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHH-HHHHHHHGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSSSSTTSCCHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCcCcHhHHH
Confidence            789999999999999776543 33332222221111 1111112233557788999999997  5789999999999999


Q ss_pred             HHHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         132 IAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       132 l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +++.+.++...+.+..+.||+|.+|+++|.+||++++.+.
T Consensus        80 l~~~l~~~~~~~~~~~~~yP~L~~~~~rv~~~P~vk~~l~  119 (142)
T d1k3ya1          80 LVELLYYVEELDSSLISSFPLLKALKTRISNLPTVKKFLQ  119 (142)
T ss_dssp             HHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHSHHHHHHHS
T ss_pred             HHHHHHHHHHcCCcccccCccHHHHHHHHHhCHHHHHHHc
Confidence            9999999988877777789999999999999999998765

>d2gsta1 a.45.1.1 (A:85-217) Class mu GST {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class mu GST
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=4.7e-13  Score=127.15  Aligned_cols=132  Identities=13%  Similarity=0.150  Sum_probs=97.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP  134 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~  134 (1012)
                      |+|.++.++++++++...+.+.. ..+.......  ......+...+.+...|..+|++|++++||+|+++|+||++++.
T Consensus         1 L~Gkt~~E~~~vd~l~~~~~D~~-~~~~~~~~~~--~~e~~k~~~~~~l~~~l~~le~~l~~~~~l~Gd~~T~aD~~l~~   77 (133)
T d2gsta1           1 LCGETEEERIRADIVENQVMDNR-MQLIMLCYNP--DFEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYD   77 (133)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHH-HHHHHHHTCT--THHHHHHHHHHTHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH-HHHHHHhccc--cHHHHHHHHHHHHHHHHHHHHHHhCCCCceeCCccchhHHHHHH
Confidence            67899999999999977666433 2332222211  12222344567788899999999999999999999999999999


Q ss_pred             HhhhhhhccccccCCCchhHHHHHHHhcCCccccccchhhhhhhcccccCccccccCC
Q psy3752         135 LLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQAGVHFGHQTRFWNP  192 (1012)
Q Consensus       135 ~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt~~~~l~~a~~h~Gh~~~~wnp  192 (1012)
                      ++.++...+.+..+.||+|.+|+++|.++|++++.+. -+.+..  ..+.++..+|+.
T Consensus        78 ~l~~~~~~~~~~~~~~P~L~~~~~~i~~~P~ik~yl~-s~~~~~--~p~~~~~a~~~~  132 (133)
T d2gsta1          78 ILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMK-SSRYLS--TPIFSKLAQWSN  132 (133)
T ss_dssp             HHHHHHHHSTTTTTTCHHHHHHHHHHHTSHHHHHHHT-STTCCC--CCCSCTTSSSSC
T ss_pred             HHHHHHHhCcchhhhCHHHHHHHHHHHcCHHHHHHHh-CCCcCC--CCCCCcccCcCC
Confidence            9999987777777889999999999999999988775 333322  223333445654

>d1r5aa1 a.45.1.1 (A:87-215) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=99.38  E-value=2.2e-13  Score=128.73  Aligned_cols=106  Identities=8%  Similarity=0.080  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHh----hhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHH
Q psy3752          58 SDPLMRARARLMLLNFEKEIFIHLYML----ENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIA  133 (1012)
Q Consensus        58 ~~~~era~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~  133 (1012)
                      +|+.+||.+++|+.+-...+++.+...    .....+..    +...+.+.+.|..||.+|++++||+|+++|+|||+++
T Consensus         1 kD~k~RA~v~q~L~f~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~le~~L~~~~yl~Gd~~SiADi~l~   76 (129)
T d1r5aa1           1 KDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHLGAHLD----QTKKAKLAEALGWFEAMLKQYQWSAANHFTIADIALC   76 (129)
T ss_dssp             SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHTTTSSSSSSSSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHHHHccCCCcccCCCcHHHHHHH
Confidence            478999999999765444444433221    11122222    3455678899999999999999999999999999999


Q ss_pred             HHhhhhhhccccccCCCchhHHHHHHHhcCCcccc
Q psy3752         134 PLLWRLDYYGINLSKSASPLIKYAERIFSRPSYME  168 (1012)
Q Consensus       134 ~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~  168 (1012)
                      +.+.++...++++ +.||+|.+|++||++||+...
T Consensus        77 ~~~~~~~~~~~~~-~~~p~l~~w~~r~~~~~~~~~  110 (129)
T d1r5aa1          77 VTVSQIEAFQFDL-HPYPRVRAWLLKCKDELEGHG  110 (129)
T ss_dssp             HHHHHHHHTTCCC-TTCHHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHHHHcCCCh-hhChHHHHHHHHHHhcccCcc
Confidence            9999998888876 469999999999999976544

>d1v2aa1 a.45.1.1 (A:84-208) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=99.38  E-value=2.1e-13  Score=128.20  Aligned_cols=109  Identities=17%  Similarity=0.274  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHh---hhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHH
Q psy3752          58 SDPLMRARARLMLLNFEKEIFIHLYML---ENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP  134 (1012)
Q Consensus        58 ~~~~era~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~  134 (1012)
                      +||.+|+++++|+.+-...+++.+...   .....+..    +...+.+.+.|+.||++|++++||+|+++|+|||++++
T Consensus         1 kDp~~RA~v~q~l~f~~~~l~p~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~le~~L~~~~yl~Gd~~T~ADi~l~~   76 (125)
T d1v2aa1           1 KDPKVRSVVNQRLFFDIGTLYKRIIDVIHLVMKKEQPS----DEQMEKLKGALDLLEQFVTERAYAAADHLTVADICLLG   76 (125)
T ss_dssp             CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHHHHHHHHHHHSSSSSSSSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCh----HHHHHHHHHHHHHHHHHhCCCCccCCCCCcHHHHHHHH
Confidence            489999999999765555555443222   11121222    22346688899999999999999999999999999999


Q ss_pred             HhhhhhhccccccCCCchhHHHHHHHhcC-Cccccccc
Q psy3752         135 LLWRLDYYGINLSKSASPLIKYAERIFSR-PSYMESLT  171 (1012)
Q Consensus       135 ~L~~l~~~~~~l~~~~P~L~aw~~ri~~r-p~~~~~lt  171 (1012)
                      .+.++...+.++ +.||+|.+|++||.++ |+|++...
T Consensus        77 ~~~~~~~~~~~~-~~~P~l~~w~~r~~~~~P~~~e~~~  113 (125)
T d1v2aa1          77 TVTALNWLKHDL-EPFPHIRAWLERVRAEMPDYEEFSK  113 (125)
T ss_dssp             HHHGGGTTTCCC-TTCHHHHHHHHHHHTTSTTHHHHHH
T ss_pred             HHHHHHHcCCCc-ccCHHHHHHHHHHHHhCchHHHHHH
Confidence            999998888876 4599999999999875 99987653

>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class mu GST
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.37  E-value=5.7e-13  Score=126.56  Aligned_cols=114  Identities=11%  Similarity=0.120  Sum_probs=90.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP  134 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~  134 (1012)
                      |+|.++.|+++++++...+.+. ...+.......  ..........+.+.+.|..||++|++++||+|+++|+||+++++
T Consensus         1 L~Gkt~~E~~~vd~i~~~~~Dl-~~~~~~~~~~~--~~e~~k~~~~~~l~~~l~~le~~l~~~~~l~Gd~~T~AD~~~~~   77 (133)
T d1gsua1           1 MCGETEVEKQRVDVLENHLMDL-RMAFARLCYSP--DFEKLKPAYLEQLPGKLRQLSRFLGSRSWFVGDKLTFVDFLAYD   77 (133)
T ss_dssp             CSCCSHHHHHHHHHHHHHHHHH-HHHHHHHHHST--THHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHHH-HHHHHHHhccc--cHHHHHHHHHHHHHHHHHHHHHHhCCCCceeCCCcchhHHHHHH
Confidence            6789999999999997666643 33333322221  11222344557788899999999999999999999999999999


Q ss_pred             HhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         135 LLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       135 ~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ++.++...+.+..+.||+|.+|++++.++|++++.+.
T Consensus        78 ~l~~~~~~~~~~l~~~P~L~~~~~~v~~~P~Ik~yl~  114 (133)
T d1gsua1          78 VLDQQRMFVPDCPELQGNLSQFLQRFEALEKISAYMR  114 (133)
T ss_dssp             HHHHHHHHSTTCGGGSSHHHHHHHHHHTSHHHHHHHT
T ss_pred             HHHHHHHhCcchhhhCchHHHHHHHHHhCHHHHHHHc
Confidence            9999887777767789999999999999999998775

>d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.3e-13  Score=133.14  Aligned_cols=114  Identities=11%  Similarity=0.105  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH---HhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHH
Q psy3752          58 SDPLMRARARLMLLNFEKEIFIHLY---MLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP  134 (1012)
Q Consensus        58 ~~~~era~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~  134 (1012)
                      .|+.+|+++++|+.+.+..+.+...   .......+.+.+..+.....+.+.|..||++|++++||+|+++|+|||++++
T Consensus        13 ~d~~~ra~v~~Wl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~le~~L~~~~~l~Gd~~T~ADi~l~~   92 (144)
T d1nhya1          13 DDLNAQAQIIRWQSLANSDLCIQIANTIVPLKGGAPYNKKSVDSAMDAVDKIVDIFENRLKNYTYLATENISLADLVAAS   92 (144)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTTGGGGGTHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccchHHHHH
Confidence            4789999999998887766544422   1122233455566678889999999999999999999999999999999999


Q ss_pred             Hhhhhhhccc--cccCCCchhHHHHHHHhcCCccccccc
Q psy3752         135 LLWRLDYYGI--NLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       135 ~L~~l~~~~~--~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      .+.++...+.  ...++||+|.+|+++|.+||+|++++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~k~~~~  131 (144)
T d1nhya1          93 IFTRYFESLFGTEWRAQHPAIVRWFNTVRASPFLKDEYK  131 (144)
T ss_dssp             HHHHHHHHTCCHHHHHHCHHHHHHHHHHHHSTTTGGGCT
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHCCHHHHHHhc
Confidence            9988654433  334679999999999999999999876

>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=99.37  E-value=4.2e-13  Score=129.23  Aligned_cols=117  Identities=10%  Similarity=0.125  Sum_probs=88.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHH
Q psy3752          54 QLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERN-KTSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDV  130 (1012)
Q Consensus        54 ~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi  130 (1012)
                      .|||.++.+|+++++|...+.+ ++..+........ .......+.....+.+.|..+|.+|.  +++|++|+++|+||+
T Consensus         1 nLyg~~~~E~a~vD~~~~~~~d-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~AD~   79 (143)
T d1b48a1           1 NLYGKDLKERVRIDMYADGTQD-LMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADI   79 (143)
T ss_dssp             TCSCSSHHHHHHHHHHHHHHHH-HHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSSSSSSSSCCHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCccHHHH
Confidence            3899999999999999776654 3333332222111 11122223444567788999999996  457999999999999


Q ss_pred             HHHHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         131 VIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       131 ~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ++++.+.++...+.+..+.||+|.+|+++|.+||++++.+.
T Consensus        80 ~l~~~l~~~~~~~~~~~~~~P~L~~~~~rv~~~P~ik~yl~  120 (143)
T d1b48a1          80 QLLEAILMVEELSAPVLSDFPLLQAFKTRISNIPTIKKFLQ  120 (143)
T ss_dssp             HHHHHHHHHHTTCTTGGGGCHHHHHHHHHHHTSHHHHHHHS
T ss_pred             HHHHHHHHHHHhCcchhhhCHHHHHHHHHHHhCHHHHHHHc
Confidence            99999999887777767789999999999999999998765

>d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]

Probab=99.37  E-value=4.8e-13  Score=126.06  Aligned_cols=111  Identities=16%  Similarity=0.160  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccccHHHHHHHHHHHHHHHHHHHhcccCCCccc-CCCcCHHHHHHHH
Q psy3752          58 SDPLMRARARLMLLNFEKEIFIHLYMLE--NERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYML-GDEFSMLDVVIAP  134 (1012)
Q Consensus        58 ~~~~era~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~-Gd~~TlADi~l~~  134 (1012)
                      .||.+|+++++|+.+....+++.+....  ...........+...+.+.+.|+.||++|++++||+ ||++|+|||++++
T Consensus         1 sDp~~RA~v~qwL~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~la~Gd~~TiADi~~~~   80 (127)
T d1jlwa1           1 SDPRRRAVVHQRLFFDVAVLYQRFAEYYYPQIFGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGGDDPTIADLSILA   80 (127)
T ss_dssp             CSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSTTCCSSCCHHHHHHHHHHHHHHHHHTTTCSSTTCSSSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHhccCCceeccCccchhhHHHHH
Confidence            4799999999998765555554432211  111111112224456778899999999999999995 9999999999999


Q ss_pred             HhhhhhhccccccCCCchhHHHHHHHhcCCccccc
Q psy3752         135 LLWRLDYYGINLSKSASPLIKYAERIFSRPSYMES  169 (1012)
Q Consensus       135 ~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~  169 (1012)
                      .+.++...+.++ +.||+|.+|++||+++|.+.+.
T Consensus        81 ~~~~~~~~~~~~-~~~P~l~~w~~rl~~~p~~~~~  114 (127)
T d1jlwa1          81 TIATYEVAGYDL-RRYENVQRWYERTSAIVPGADK  114 (127)
T ss_dssp             HHHHHHHTTCCG-GGSHHHHHHHHHHHHHSTTHHH
T ss_pred             HHHHHHHcCCCh-hhChHHHHHHHHHHccCchHHH
Confidence            999999888876 4599999999999999987653

>d2gsqa1 a.45.1.1 (A:76-202) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=99.35  E-value=1.2e-12  Score=122.93  Aligned_cols=116  Identities=11%  Similarity=0.053  Sum_probs=83.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH----HHHHhcccCCCcccCCCcCHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRL----ITLAPLFLKNKYMLGDEFSMLDV  130 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~Le~~L~~~~fL~Gd~~TlADi  130 (1012)
                      |+|.++.+++++++|+..+.+. +..+...............+.....+.+.+    ..+++++++++|++|+++|+||+
T Consensus         1 L~Gkt~~e~a~id~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yl~Gd~~T~AD~   79 (127)
T d2gsqa1           1 LDGKTSLEKYRVDEITETLQDI-FNDVVKIKFAPEAAKEAVQQNYEKSCKRLAPFLEGLLVSNGGGDGFFVGNSMTLADL   79 (127)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCSSTTSCCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH-HHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEeccCCchhHH
Confidence            6789999999999998776653 333333222222211111122223333333    34566677889999999999999


Q ss_pred             HHHHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         131 VIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       131 ~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ++++++.++...+.+..+.||+|.+|+++|.+||++++.+.
T Consensus        80 ~l~~~l~~~~~~~~~~~~~~P~l~~~~~~i~~~P~vk~yl~  120 (127)
T d2gsqa1          80 HCYVALEVPLKHTPELLKDCPKIVALRKRVAECPKIAAYLK  120 (127)
T ss_dssp             HHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccccccCcHHHHHHHHHHhCHHHHHHHH
Confidence            99999999988888877789999999999999999887654

>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-12  Score=124.63  Aligned_cols=114  Identities=14%  Similarity=0.147  Sum_probs=89.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAP  134 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~  134 (1012)
                      |+|.++.++++++++...+.+. ...+........  .....+...+.+.+.|..||++|++++||+|+++|+||+++++
T Consensus         1 L~G~t~~E~a~vD~~~~~v~D~-~~~~~~~~~~~~--~e~~k~~~~~~l~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~   77 (133)
T d2c4ja1           1 LCGESEKEQIREDILENQFMDS-RMQLAKLCYDPD--FEKLKPEYLQALPEMLKLYSQFLGKQPWFLGDKITFVDFIAYD   77 (133)
T ss_dssp             CSCCSHHHHHHHHHHHHHHHHH-HHHHHHHHHCTT--HHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHcccc--HHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCccHHHHHHHH
Confidence            6789999999999997665543 333332222211  1122244557788899999999999999999999999999999


Q ss_pred             HhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         135 LLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       135 ~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      .+.++...+.+..+.||+|.+|++||.++|++++.+.
T Consensus        78 ~l~~~~~~~~~~l~~~P~L~~~~~rv~~~P~ik~yl~  114 (133)
T d2c4ja1          78 VLERNQVFEPSCLDAFPNLKDFISRFEGLEKISAYMK  114 (133)
T ss_dssp             HHHHHHHHSTTTTTTCHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHhCchhhhhCchHHHHHHHHHhCHHHHHHHh
Confidence            9999987777767889999999999999999988776

>d1gula1 a.45.1.1 (A:81-220) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=99.34  E-value=8.7e-13  Score=126.46  Aligned_cols=116  Identities=14%  Similarity=0.169  Sum_probs=86.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNK-TSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVV  131 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~  131 (1012)
                      |||.++.+++++++|...+.+ ++..+......... ......+.....+.+.|..++..|+  +++|++|+++|+||++
T Consensus         1 LyGkd~~E~a~vD~~~d~~~d-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~L~~~~~~fl~Gd~~T~AD~~   79 (140)
T d1gula1           1 LFGKNLKERTLIDMYVEGTLD-LLELLIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKILRGHGQSFLVGNQLSLADVI   79 (140)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHH-HHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCSSSSTTSCCHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeeCCCCCHHHHH
Confidence            789999999999999765543 33333332222111 1111223334556777888999886  5789999999999999


Q ss_pred             HHHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         132 IAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       132 l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +++.+.++...+.+..+.||+|.+|++||.++|++++.+.
T Consensus        80 l~~~l~~~~~~~~~~~~~~P~L~~~~~rv~~~P~ik~yl~  119 (140)
T d1gula1          80 LLQTILALEEKIPNILSAFPFLQEYTVKLSNIPTIKRFLE  119 (140)
T ss_dssp             HHHHHHHHHHHCTTTTTTCHHHHHHHHHHTTSHHHHHHHS
T ss_pred             HHHHHHHHHHhCcchhhHhHHHHHHHHHHHhCHHHHHHHc
Confidence            9999999877666667789999999999999999998765

>d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-12  Score=125.19  Aligned_cols=116  Identities=21%  Similarity=0.331  Sum_probs=88.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhccc--CCCcccCCCcCHHHHHHH
Q psy3752          56 MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFL--KNKYMLGDEFSMLDVVIA  133 (1012)
Q Consensus        56 ~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~--~~~fL~Gd~~TlADi~l~  133 (1012)
                      +|.||.+||++++|+..++. +...+......   ...+..+...+.+.+.|..+|+.|.  +++|++|+++|+|||+++
T Consensus         1 LP~DP~~rA~~r~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~le~~L~~~~~~f~~G~~~slADi~~~   76 (139)
T d1eema1           1 LPDDPYEKACQKMILELFSK-VPSLVGSFIRS---QNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIW   76 (139)
T ss_dssp             SCSSHHHHHHHHHHHHHHTT-HHHHHHHHTTC---CSHHHHHHHHHHHHHHHHHHHHHHHHHCSSBTTBSSCCHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHhH-HhHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHhCCCCEEeeCCccHHHHHHH
Confidence            58999999999999777654 33333322222   2233445667788899999999996  568999999999999999


Q ss_pred             HHhhhhhhccc-cccCCCchhHHHHHHHhcCCccccccchhhh
Q psy3752         134 PLLWRLDYYGI-NLSKSASPLIKYAERIFSRPSYMESLTPAEK  175 (1012)
Q Consensus       134 ~~L~~l~~~~~-~l~~~~P~L~aw~~ri~~rp~~~~~lt~~~~  175 (1012)
                      |++.++...+. ...+.||+|.+|+++|.+||+|++++.+-+.
T Consensus        77 p~~~~~~~~~~~~~~~~~P~l~~w~~r~~~rP~vk~~~~~~e~  119 (139)
T d1eema1          77 PWFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKD  119 (139)
T ss_dssp             HHHHHHTTTTCGGGSSSCHHHHHHHHHHHTCHHHHHHCCCHHH
T ss_pred             HHHHHHHHhccccccccChHHHHHHHHHHcCcHHHHHCCCHHH
Confidence            99988766543 3446799999999999999999999874443

>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.34  E-value=1.3e-12  Score=122.66  Aligned_cols=112  Identities=13%  Similarity=0.053  Sum_probs=87.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHH----HHHH---HHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHH
Q psy3752          58 SDPLMRARARLMLLNFEKEI----FIHL---YMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDV  130 (1012)
Q Consensus        58 ~~~~era~v~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi  130 (1012)
                      +++.+||.+++|+.+-...+    ....   ...+..+.+.+.+..+.....+.+.|+.+|.+|++++|++|+++|+|||
T Consensus         6 ~~~~~~a~~~~~m~~e~~~f~p~~~~l~~~~~~~p~~G~~~d~~~v~~~~~~l~~~l~~le~~L~~~~yl~Gd~~TlADi   85 (126)
T d1gnwa1           6 KNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDL   85 (126)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCccccCccccchH
Confidence            68999999999964432221    1111   1112233455667778888999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcccc-ccCCCchhHHHHHHHhcCCccccc
Q psy3752         131 VIAPLLWRLDYYGIN-LSKSASPLIKYAERIFSRPSYMES  169 (1012)
Q Consensus       131 ~l~~~L~~l~~~~~~-l~~~~P~L~aw~~ri~~rp~~~~~  169 (1012)
                      ++++.+.++...+.. +.+.||+|.+|++|+.+||+|+++
T Consensus        86 ~~~~~l~~~~~~~~~~~~~~~P~l~~W~~rl~~RPs~kkv  125 (126)
T d1gnwa1          86 HHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKV  125 (126)
T ss_dssp             TTHHHHHHHTTSGGGHHHHTSHHHHHHHHHHHSSHHHHTT
T ss_pred             HHHHHHHHHHHcCcccccccCHHHHHHHHHHHcCHHHHhh
Confidence            999999888766543 346799999999999999999864

>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=99.29  E-value=3.6e-12  Score=121.76  Aligned_cols=113  Identities=13%  Similarity=0.078  Sum_probs=89.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHH
Q psy3752          56 MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL  135 (1012)
Q Consensus        56 ~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~  135 (1012)
                      ++.++.|+++++++...+.+. ...+.......  ...+..+...+.+...|+.||+.|++++||+|+++|+||+++|.+
T Consensus         1 lG~t~~E~a~id~i~~~v~Dl-~~~~~~~~~~p--~~e~~k~~~~~~l~~~l~~le~~L~~~~fl~G~~lT~AD~~~~~~   77 (140)
T d1duga1           1 LGGCPKERAEISMLEGAVLDI-RYGVSRIAYSK--DFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDA   77 (140)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHH-HHHHHHHHTCT--THHHHHHHHHHHHHHHHHHHHHHTTTCSBTTBSSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCccHHHHHHHHH
Confidence            367899999999987665543 33333322221  112223455677899999999999999999999999999999999


Q ss_pred             hhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         136 LWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       136 L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +.++...+.+..+.||+|.+|++||.++|.+++.+.
T Consensus        78 l~~~~~~~~~~l~~~P~L~~~~~ri~~~P~Ik~yl~  113 (140)
T d1duga1          78 LDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLK  113 (140)
T ss_dssp             HHHHHHHCTTTTTTCHHHHHHHHHHHHSHHHHHHHT
T ss_pred             HHHHHHhCccchhhChHHHHHHHHHHhCHHHHHHHc
Confidence            999887777777789999999999999999998876

>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=3.1e-12  Score=121.08  Aligned_cols=62  Identities=37%  Similarity=0.617  Sum_probs=55.5

Q ss_pred             eeeeeccC-CceEEEEEecCCc---------hHHHHHHHHHHhccCCcccCCcCCChHHHHHHHHHHHHHHH
Q psy3752         536 NLISYLHD-NKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQ  597 (1012)
Q Consensus       536 ~i~~y~H~-~~~g~~v~~~~~~---------~~~~~~~amhi~a~~p~~~~~~~v~~~~i~~ek~i~v~K~~  597 (1012)
                      .+++|+|+ ||+||||.+++..         .+++++|||||||++|.+++++++|++++++|++++..++.
T Consensus         5 ~v~~YiH~~gkigvlv~l~~~~d~~~~~~~~~~~ak~iAmhiaA~~P~~i~~~~v~~~~i~~E~ei~~~~~~   76 (142)
T d1tfea_           5 IIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL   76 (142)
T ss_dssp             EEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCcEEEEEEEEeccchhhhhhHHHHHHHHHHhhhhhcCcccCChhHCCHHHHHHHHHHHHHHhh
Confidence            59999996 6999999998754         25899999999999999999999999999999998877763

>d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.28  E-value=4.6e-13  Score=127.27  Aligned_cols=117  Identities=21%  Similarity=0.257  Sum_probs=81.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--hhhcccccc-HHHHHHHHHHHHHHHHHHHhcccC--CCcccCCCcCHH
Q psy3752          54 QLMSSDPLMRARARLMLLNFEKEIFIHLYM--LENERNKTS-IKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSML  128 (1012)
Q Consensus        54 ~L~p~~~~era~v~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~~~L~~Le~~L~~--~~fL~Gd~~TlA  128 (1012)
                      +|+|.|+.+|+++++|+.+....+.+....  ......+.. ....+.....+.+.+..+|+.|++  ++|++|+++|+|
T Consensus         1 PLlP~Dp~~RA~vr~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lE~~L~~~~~~~~~Gd~~slA   80 (133)
T d1e6ba1           1 PLLPRDLHKRAVNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHATGDEIYLA   80 (133)
T ss_dssp             CSSCSCHHHHHHHHHHHHHHHHTTCC-------------------CCCCCHHHHHHHHHHHHHHTTSCSSBTTBSSCCHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHcCcCcchhHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeeeCCcCcch
Confidence            499999999999999988877665322110  000000000 000111224567788889998864  579999999999


Q ss_pred             HHHHHHHhhhh-hhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         129 DVVIAPLLWRL-DYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       129 Di~l~~~L~~l-~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ||++++.+.++ ...+.++ ..||+|.+|++||.+||+|+++..
T Consensus        81 Di~l~~~~~~~~~~~~~d~-~~~P~l~aw~~r~~~rPa~~~a~p  123 (133)
T d1e6ba1          81 DLFLAPQIHGAINRFQINM-EPYPTLAKCYESYNELPAFQNALP  123 (133)
T ss_dssp             HHHHHHHHHHHHHHHCCCC-TTCHHHHHHHHHHTTCHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHhhhhh-ccCcHHHHHHHHHHCCHHHHHhCc
Confidence            99999998765 4456765 459999999999999999998765

>d1oyja1 a.45.1.1 (A:86-230) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.26  E-value=4.6e-12  Score=122.05  Aligned_cols=124  Identities=20%  Similarity=0.228  Sum_probs=97.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccC---CCcCH
Q psy3752          51 PYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLG---DEFSM  127 (1012)
Q Consensus        51 p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~G---d~~Tl  127 (1012)
                      |++.+.|.++.+||+++.|..+++..+++.+.......    .+..+...+++...|..+|+.|.+++|+.|   +++|+
T Consensus         4 p~~~~~~~~~yeRA~~R~W~~~vd~~i~~~~~~~~~~~----~e~~e~a~~~~~~~L~~lE~~l~~~~~~~g~~g~~~sl   79 (145)
T d1oyja1           4 PANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLK----GEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGF   79 (145)
T ss_dssp             CSTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHTTCSSSSSSSCCSCCH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCcccH
Confidence            44567889999999999999888887776655543322    223356678899999999999999998876   56999


Q ss_pred             HHHHHHHHhhhhhhc----cccccCCCchhHHHHHHHhcCCccccccchhhhhhh
Q psy3752         128 LDVVIAPLLWRLDYY----GINLSKSASPLIKYAERIFSRPSYMESLTPAEKIMQ  178 (1012)
Q Consensus       128 ADi~l~~~L~~l~~~----~~~l~~~~P~L~aw~~ri~~rp~~~~~lt~~~~l~~  178 (1012)
                      +|++++|++.++...    ++++.+.+|+|.+|+++|.+||+|++++++-+++.+
T Consensus        80 ~Di~~~p~~~~~~~~~~~~g~~~~~~~P~l~~W~~rl~~rpavk~~lp~~e~~~e  134 (145)
T d1oyja1          80 VDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHLPSPEKVYD  134 (145)
T ss_dssp             HHHHHGGGGGGHHHHHHHHTCCHHHHCHHHHHHHHHHTTSHHHHHHCCCHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHhhcccccccCHHHHHHHHHHhCChHHHHHCCCHHHHHH
Confidence            999999999887432    556667799999999999999999999875554433

>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=99.23  E-value=1.3e-11  Score=117.20  Aligned_cols=113  Identities=14%  Similarity=0.136  Sum_probs=88.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHH
Q psy3752          56 MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPL  135 (1012)
Q Consensus        56 ~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~  135 (1012)
                      +|.++.|+++++++...+.+ +...+........  ..+..+...+.+...|..||+.|++++||+|+++|+||+++|..
T Consensus         1 ~G~t~~E~~~vD~i~~~~~D-l~~~~~~~~~~~~--~e~~K~~~~~~l~~~l~~le~~L~~~~~lvG~~lT~AD~~~f~~   77 (136)
T d2fhea1           1 IGTTSEERARVSMIEGAAVD-LRQGISRISYQPK--FEQLKEGYLKDLPTTMKMWSDFLGKNPYLRGTSVSHVDFMVYEA   77 (136)
T ss_dssp             SCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTSTT--HHHHHHHHHHHHHHHHHHHHHHHTTCSBTTBSSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHhCch--HHHHHHHHHHHHHHHHHHHHHHhccCCcccCCcccchHHHHHHH
Confidence            36789999999999776664 3333333322211  12223445567888999999999999999999999999999999


Q ss_pred             hhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         136 LWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       136 L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +.++...+.+..+.||+|.+|++++.++|.+++.+.
T Consensus        78 l~~~~~~~~~~l~~yP~L~~~~~~v~~~P~Ik~yl~  113 (136)
T d2fhea1          78 LDAIRYLEPHCLDHFPNLQQFMSRIEALPSIKAYME  113 (136)
T ss_dssp             HHHHHHHCTTTTTTCHHHHHHHHHHHTSHHHHHHHT
T ss_pred             HHHHHHHCCCcchhchhHHHHHHHHHhCHHHHHHHc
Confidence            999887777777889999999999999999888775

>d1m0ua1 a.45.1.1 (A:123-249) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=8.9e-12  Score=117.10  Aligned_cols=116  Identities=12%  Similarity=0.079  Sum_probs=84.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-cH-HHHHHHHHHHHHHHHHHHhcccC-CCcccCCCcCHHHHH
Q psy3752          55 LMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKT-SI-KGYKRAREEIRDRLITLAPLFLK-NKYMLGDEFSMLDVV  131 (1012)
Q Consensus        55 L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~L~~Le~~L~~-~~fL~Gd~~TlADi~  131 (1012)
                      |+|.++.+++++++|+..+.+ ++..+.......... .. .......+.+.+.|..||++|++ +.|++|+++|+||++
T Consensus         1 L~g~~~~e~a~vd~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~fl~G~~~T~aD~~   79 (127)
T d1m0ua1           1 LCGATPWEDLQIDIVVDTIND-FRLKIAVVSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADVY   79 (127)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTCSSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSBTTBCCHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCcccHHHHH
Confidence            689999999999999876654 333333322222111 11 11122344567789999999974 469999999999999


Q ss_pred             HHHHhhhhhh-ccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         132 IAPLLWRLDY-YGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       132 l~~~L~~l~~-~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +++.+.++.. .+.++.+.||+|.+|++|+.++|.+++.+.
T Consensus        80 l~~~l~~~~~~~~~~~~~~~P~L~~~~~rv~~~P~ik~yl~  120 (127)
T d1m0ua1          80 FAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIE  120 (127)
T ss_dssp             HHHHHHHHHHHHTSCTTTTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchhhcChHHHHHHHHHHcCHHHHHHHH
Confidence            9999988754 455667789999999999999999987654

>d1tw9a1 a.45.1.1 (A:78-206) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=99.18  E-value=1.3e-11  Score=116.10  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=83.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhh-----hccccccHHHHHHHHHHHHHHHHHHHhcccC--CCcccCCCcCHHH
Q psy3752          57 SSDPLMRARARLMLLNFEKEIFIHLYMLE-----NERNKTSIKGYKRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLD  129 (1012)
Q Consensus        57 p~~~~era~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~Le~~L~~--~~fL~Gd~~TlAD  129 (1012)
                      |.+|.+++++++|+..+.+.. ..+....     ...........+.....+.+.|..||..|++  ++|++|+++|+||
T Consensus         2 Gktp~e~a~vd~~~d~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~le~~L~~~~~~~~~G~~~T~aD   80 (129)
T d1tw9a1           2 GATPFESALIDSLADAYTDYR-AEMKTYYYTALGFMTGDVDKPKTDVLLPARTKFLGFITKFLKKNSSGFLVGDKISWVD   80 (129)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHH-HHC---------------CHHHHHTHHHHHHHHHHHHHHHHHHCTTSSSSTTSCCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCcchHHH
Confidence            578999999999987766432 2221111     1111222233344566678889999999964  5799999999999


Q ss_pred             HHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         130 VVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       130 i~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      +++++.+.++...+.+..+.||+|.+|+++|.++|++++.+.
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~P~L~~~~~rv~~~P~ik~yl~  122 (129)
T d1tw9a1          81 LLVAEHVADMTNRVPEYIEGFPEVKAHMERIQQTPRIKKWIE  122 (129)
T ss_dssp             HHHHHHHHHHHHHCGGGGTTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccccChHHHHHHHHHHcCHHHHHHHH
Confidence            999999999887776767789999999999999999987654

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=99.17  E-value=1.1e-11  Score=107.31  Aligned_cols=57  Identities=18%  Similarity=0.486  Sum_probs=51.6

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC-CCCCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY-PQLMS   57 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~-~~L~p   57 (1012)
                      ++|+.+.||+.+   +++||+++||.|+||+|+|||.+|+||.||++||+++|+. ..|||
T Consensus        25 i~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~~L~P   85 (85)
T d1r5aa2          25 VELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSYLVSAYGKDENLYP   85 (85)
T ss_dssp             CCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHHHHHHHCCSSCSSC
T ss_pred             CCCEEEEecCCCcccCCHHHHHHHhcCCCCEEEEcccceecHHHHHHHHHHHhCCCCCCCC
Confidence            689999999865   5689999999999999999999999999999999999964 56887

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=99.13  E-value=1.2e-11  Score=106.91  Aligned_cols=57  Identities=23%  Similarity=0.517  Sum_probs=51.2

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC-CCCCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY-PQLMS   57 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~-~~L~p   57 (1012)
                      ++|+.+.|++..   .+++|+++||.|+||+|+|||.+|+||.||++||+++|+. ..|+|
T Consensus        24 i~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~ES~aI~~yL~~~~~~~~~L~P   84 (84)
T d1jlva2          24 VELNLKLTNLMAGEHMKPEFLKINPQHCIPTLVDNGFALWESRAICTYLAEKYGKDDKLYP   84 (84)
T ss_dssp             CCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHHHHHCCCGGGSC
T ss_pred             CCCEEEEecCCCCccCCHHHHHHhccccCCEEEECCEEEEcHHHHHHHHHHHcCCCCCCCC
Confidence            689999999864   5689999999999999999999999999999999999964 45776

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=99.10  E-value=2.3e-11  Score=105.02  Aligned_cols=57  Identities=21%  Similarity=0.489  Sum_probs=51.7

Q ss_pred             CceEEEEecCCC--CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC-CCCCCC
Q psy3752           1 MDFEIRDIDLFN--KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP-YPQLMS   57 (1012)
Q Consensus         1 I~ye~~~Vd~~~--~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p-~~~L~p   57 (1012)
                      |+|+.+.|++..  .+++|+++||.|+||+|+|||.+|+||.+|++||+++|+ +..|+|
T Consensus        24 i~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~~~g~~l~eS~aI~~YL~~~~~~~~~L~P   83 (83)
T d1v2aa2          24 ITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLYLVETYAKDDTLYP   83 (83)
T ss_dssp             CCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHHHHHCSSSTTSC
T ss_pred             CCceEEEEeCCCCcchHHHHHHhhccCCCEEEEccceeEcHHHHHHHHHHHhCCCCCCCC
Confidence            689999999876  458899999999999999999999999999999999985 566887

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=99.07  E-value=6.1e-11  Score=101.71  Aligned_cols=52  Identities=42%  Similarity=0.830  Sum_probs=48.4

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY   52 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~   52 (1012)
                      |+|+.+.||+..   +++||+++||.|+||+|++||.+|+||.||++||+++||+
T Consensus        26 i~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~aI~~YL~~~y~~   80 (81)
T d1aw9a2          26 LDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYIASKYAS   80 (81)
T ss_dssp             CCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHHHHHHTCS
T ss_pred             CCCEEEEecCCCcchhhHHHHHHhhcCeeEEEEECCcEEECHHHHHHHHHHHCCC
Confidence            689999999865   6789999999999999999999999999999999999985

>d1tu7a1 a.45.1.1 (A:78-208) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=99.07  E-value=1.5e-10  Score=109.17  Aligned_cols=112  Identities=13%  Similarity=0.057  Sum_probs=78.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH----HHHhcccCCCcccCCCcCHHHHHH
Q psy3752          57 SSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLI----TLAPLFLKNKYMLGDEFSMLDVVI  132 (1012)
Q Consensus        57 p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~Le~~L~~~~fL~Gd~~TlADi~l  132 (1012)
                      |.++.++++++++...+.+.. ..+............  .+.....+.+.+.    .+++.+++++||+|+++|+||+++
T Consensus         1 G~~~~E~a~vD~i~~~~~Dl~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~G~~lT~aD~~~   77 (131)
T d1tu7a1           1 GENEMETTYIDMFCEGVRDLH-VKYTRMIYMAYETEK--DPYIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYAL   77 (131)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHCHHHHH--HHHHHHTHHHHHHHHHHHHTTTGGGSSBTTBSSCCHHHHHH
T ss_pred             CcCHHHHHHHHHHHhHHHHHH-HHHHHHhccccHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCCCcchhHHHH
Confidence            467899999999977666432 222222221111111  1112222333343    445555678999999999999999


Q ss_pred             HHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         133 APLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       133 ~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ++.+.++...+.++.+.||+|.+|++|++++|.+++.+.
T Consensus        78 ~~~l~~~~~~~~~~~~~~P~L~~~~~rv~~~P~Ik~yl~  116 (131)
T d1tu7a1          78 FEELDVHQILDPHCLDKFPLLKVFHQRMKDRPKLKEYCE  116 (131)
T ss_dssp             HHHHHHHHHHCTTTTTTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHhChhhhhccHHHHHHHHHHHcCHHHHHHHh
Confidence            999999988877777889999999999999999998776

>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.07  E-value=9.3e-11  Score=109.82  Aligned_cols=110  Identities=14%  Similarity=0.102  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhcc--------cCCCcccCCCcCHH
Q psy3752          57 SSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPLF--------LKNKYMLGDEFSML  128 (1012)
Q Consensus        57 p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~L--------~~~~fL~Gd~~TlA  128 (1012)
                      |.++.++++++++...+.+ ++..+.......  ....  +.....+...|..+|+.|        ++++||+|+++|+|
T Consensus         2 G~t~~E~a~iD~i~~~~~D-~~~~~~~~~~~~--~~~~--~~~~~~~~~~l~~le~~l~~~~~~~~~~~~flvG~~~T~A   76 (126)
T d1okta1           2 GESELNEFYADMIFCGVQD-IHYKFNNTNLFK--QNET--TFLNEDLPKWSGYFEKLLKKNHTNNNNDKYYFVGNNLTYA   76 (126)
T ss_dssp             CSSHHHHHHHHHHHHHHHH-HHHHHTTCCTTT--TCHH--HHHHTHHHHHHHHHHHHHHHTCSSCCTTCCCSSTTSCCHH
T ss_pred             CCCHHHHHHHHHHHhHHHH-HHHHHHHHhhcH--hhHH--HHHHHHHHHHHHHHHHHHHHccccccCCCCeeecCCccHH
Confidence            5789999999999776664 333322221111  1111  122344566667777665        35789999999999


Q ss_pred             HHHHHHHhhhhhhccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         129 DVVIAPLLWRLDYYGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       129 Di~l~~~L~~l~~~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      |++++..+.++...+.+..+.||+|.+|++||.++|++++.+.
T Consensus        77 D~~~~~~l~~~~~~~~~~~~~~P~L~~~~~rv~~~P~ik~yl~  119 (126)
T d1okta1          77 DLAVFNLYDDIETKYPSSLKNFPLLKAHNEFISNLPNIKNYIT  119 (126)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTTCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCHHHHHHHH
Confidence            9999999999887777777889999999999999999988765

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.1e-11  Score=104.68  Aligned_cols=55  Identities=42%  Similarity=0.806  Sum_probs=51.2

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEe-CCEeeccHHHHHHHHhhhCCCCCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDERFPYPQL   55 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~d-dg~~I~ES~aIl~YL~~~~p~~~L   55 (1012)
                      |+|+.+.|++.++++||+++||.|+||+|++ ||.+|+||.+|++||+++||+++|
T Consensus        43 i~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~dg~~i~eS~aI~~YL~e~~p~~~L   98 (98)
T d1eema2          43 IRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKL   98 (98)
T ss_dssp             CCEEEEEBCTTSCCGGGGGTCTTCCSCEEEETTCCEEESHHHHHHHHHHHSCSSCS
T ss_pred             CCCEEEEecccCCcHHHHhhhccccceeEEeCCCCEEcCHHHHHHHHHHHCCCCCC
Confidence            6899999999999999999999999999997 468999999999999999998765

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=99.05  E-value=7.6e-11  Score=100.79  Aligned_cols=52  Identities=33%  Similarity=0.507  Sum_probs=47.1

Q ss_pred             CceEEEEecCCC----CCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCC
Q psy3752           1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPY   52 (1012)
Q Consensus         1 I~ye~~~Vd~~~----~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~   52 (1012)
                      |||+.+.+++..    .+++|+++||.|+||+|+ |||.+|+||.||++||+++||+
T Consensus        23 i~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~d~g~~l~ES~aI~~yL~~~~P~   79 (80)
T d1f2ea2          23 ADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIADQNPA   79 (80)
T ss_dssp             CCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHHHHTCTT
T ss_pred             CCCEEEEEecCCCcccCCHHHHHHhhccccceEEECCCeEEecHHHHHHHHHHHCcC
Confidence            689999999764    458999999999999999 6789999999999999999985

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.04  E-value=7.6e-11  Score=101.80  Aligned_cols=52  Identities=38%  Similarity=0.758  Sum_probs=48.2

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY   52 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~   52 (1012)
                      ++|+.+.|++..   +++||+++||.|+||+|+|||.+|+||.||++||+++||+
T Consensus        25 l~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~   79 (84)
T d1gnwa2          25 LDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYIAHRYEN   79 (84)
T ss_dssp             CCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHHHHHHTTT
T ss_pred             CCcEeecccCCcccccHHHHHHHhhcCcceEEEECCcEEecHHHHHHHHHHHCcC
Confidence            689999999764   5689999999999999999999999999999999999985

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.1e-10  Score=100.50  Aligned_cols=53  Identities=30%  Similarity=0.502  Sum_probs=48.5

Q ss_pred             CceEEEEecCCC-----CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy3752           1 MDFEIRDIDLFN-----KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP   53 (1012)
Q Consensus         1 I~ye~~~Vd~~~-----~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~   53 (1012)
                      |+|+.+.|++..     ++++|+++||.|+||+|++||.+|+||.+|++||+++||++
T Consensus        25 i~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~i~eS~aI~~yL~~~~P~P   82 (83)
T d1fw1a2          25 IDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLKIDGITIHQSLAIIEYLEETRPTP   82 (83)
T ss_dssp             CCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHHHHSCSS
T ss_pred             CCCEEEeccccccccccCCHHHHHhccCCccCEEEECCEEEecHHHHHHHHHHhCCCC
Confidence            689999999754     45889999999999999999999999999999999999974

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.03  E-value=1.4e-10  Score=99.99  Aligned_cols=54  Identities=37%  Similarity=0.634  Sum_probs=50.7

Q ss_pred             CceEEEEecCCCCCchhhhcCCC-CCccEEEeCCEeeccHHHHHHHHhhhCCCCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPY-GQVPILVERDLILYESNIINEYIDERFPYPQ   54 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~-gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~~   54 (1012)
                      |+|+.+.+++..+++||+++||. |+||+|++||.+++||.+|++||+++||+++
T Consensus        29 i~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~~I~~YL~e~~P~~P   83 (84)
T d1oyja2          29 LEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTP   83 (84)
T ss_dssp             CCCEEEECCTTSCCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHHHHHCTTSC
T ss_pred             CCcEEEEEccCcCCHHHHhhCCCcCcccEEEECCceEEcHHHHHHHHHHHCCCCC
Confidence            68999999999999999999995 9999999999999999999999999999753

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=99.01  E-value=9.8e-11  Score=100.05  Aligned_cols=51  Identities=37%  Similarity=0.600  Sum_probs=47.2

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      ++|+.+.|++..   +++||+++||.|+||+|+|||.+|+||.||++||+++|.
T Consensus        26 i~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~   79 (80)
T d1axda2          26 SDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYAARKNK   79 (80)
T ss_dssp             CCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHHHHHHC
T ss_pred             CCCEEEEecCCccchhhHHHHHhhccccCCEEEECCEEEECHHHHHHHHHHhcC
Confidence            689999999876   568999999999999999999999999999999999874

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=1.8e-10  Score=98.50  Aligned_cols=53  Identities=34%  Similarity=0.715  Sum_probs=48.9

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPYP   53 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~~   53 (1012)
                      |+|+.+.|++..   .+++|+++||.|+||+|+|||.+++||.+|++||+++||++
T Consensus        25 i~~~~~~i~~~~~~~~~~~~~~~~p~~~vPvL~~~~~~l~eS~aI~~yL~~~~p~P   80 (80)
T d1e6ba2          25 LDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYLDEKYPEP   80 (80)
T ss_dssp             CCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHHHHHSCSS
T ss_pred             CCCEEEEEeccccccccHHHhhcCccccCCEEEECCEEEECHHHHHHHHHHhCCCC
Confidence            689999999876   46889999999999999999999999999999999999864

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.1e-10  Score=99.21  Aligned_cols=52  Identities=17%  Similarity=0.423  Sum_probs=49.9

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFPY   52 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p~   52 (1012)
                      |+|+.+.|++.++++||+++||.|+||+|++||.+++||.+|++||+++||+
T Consensus        34 i~~~~~~v~~~~~~~~~~~~nP~~~vPvL~~~~~~i~eS~~I~~YLee~~~~   85 (86)
T d1k0ma2          34 VTFNVTTVDTKRRTETVQKLCPGGELPFLLYGTEVHTDTNKIEEFLEAVLCP   85 (86)
T ss_dssp             CCCEEEEECTTSCCHHHHHHCTTCCSSEEEETTEEEECHHHHHHHHHHHSCT
T ss_pred             CCcEEEEeecccccHHHHHHhccCceeEEEEcccccccHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999999999999999999999999974

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=99.00  E-value=1.2e-10  Score=99.57  Aligned_cols=52  Identities=37%  Similarity=0.591  Sum_probs=46.9

Q ss_pred             CceEEEEecCCC----CCchhhhcCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCC
Q psy3752           1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILV-ERDLILYESNIINEYIDERFPY   52 (1012)
Q Consensus         1 I~ye~~~Vd~~~----~~~~~~~inP~gkVPvL~-ddg~~I~ES~aIl~YL~~~~p~   52 (1012)
                      ++|+.+.|++..    ++++|+++||.|+||+|+ +||.+|+||.||++||+++||+
T Consensus        23 i~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~ES~aI~~yL~~~~Pe   79 (80)
T d1pmta2          23 LDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLADLKPD   79 (80)
T ss_dssp             CCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHTTCGG
T ss_pred             CCCEEEEEecCCCcccCCHHHHHhcccccCCceecCCCcEEeCHHHHHHHHHHHCcC
Confidence            689999999865    457899999999999999 5789999999999999999984

>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Class alpha GST
species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]

Probab=98.94  E-value=4.9e-10  Score=104.30  Aligned_cols=115  Identities=14%  Similarity=0.104  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHH-HHHHHHHHHHHHHHHhcccC--CCcccCCCcCHHHHHH
Q psy3752          56 MSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGY-KRAREEIRDRLITLAPLFLK--NKYMLGDEFSMLDVVI  132 (1012)
Q Consensus        56 ~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~Le~~L~~--~~fL~Gd~~TlADi~l  132 (1012)
                      +|.++.+++++++++..+.+. +..+........+...+.. +.....+.+.|..||+.|+.  ++|++|+++|+||+++
T Consensus         1 ~G~~~~E~~~vD~i~~~~~Dl-~~~~~~~~~~~~~~k~~~~~~~~~~~l~~~l~~le~~L~~~~~~f~vG~~lT~aD~~~   79 (123)
T d1oe8a1           1 MGGTEEEYYNVEKLIGQAEDL-EHEYYKTLMKPEEEKQKIIKEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVL   79 (123)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHH-HHHHHTTTTCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHTCSSSSSSTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHhhhHHHHHHHHHHHhhCCCCeeeCCCCcHHHHHH
Confidence            367899999999997776643 3333333222211111111 22234578889999999964  4699999999999999


Q ss_pred             HHHhhhhhhcccc-ccCCCchhHHHHHHH-hcCCccccccc
Q psy3752         133 APLLWRLDYYGIN-LSKSASPLIKYAERI-FSRPSYMESLT  171 (1012)
Q Consensus       133 ~~~L~~l~~~~~~-l~~~~P~L~aw~~ri-~~rp~~~~~lt  171 (1012)
                      |..+.++.....+ +.+.||+|.+|++|+ .++|.+++.+.
T Consensus        80 ~~~l~~~~~~~~~~~~~~~P~L~~~~~~v~~~~P~I~~yl~  120 (123)
T d1oe8a1          80 IAVIDHVTDLDKEFLTGKYPEIHKHRENLLASSPRLAKYLS  120 (123)
T ss_dssp             HHHHHHHHHHCTTTTTTSCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccccCcHHHHHHHHHHHcChHHHHHHH
Confidence            9999988765443 446799999999997 88999887654

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=3.6e-10  Score=96.59  Aligned_cols=52  Identities=35%  Similarity=0.619  Sum_probs=46.5

Q ss_pred             CceEEEEecCCC----CCchhhhcCCCCCccEEEe-CCEeeccHHHHHHHHhhhCCC
Q psy3752           1 MDFEIRDIDLFN----KPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDERFPY   52 (1012)
Q Consensus         1 I~ye~~~Vd~~~----~~~~~~~inP~gkVPvL~d-dg~~I~ES~aIl~YL~~~~p~   52 (1012)
                      ++|+.+.|++..    .+++|+++||.|+||+|++ ||.+|+||.||++||+++||+
T Consensus        23 i~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~ES~aI~~yL~~~~Pd   79 (80)
T d1n2aa2          23 KDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD   79 (80)
T ss_dssp             CCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHHHTCGG
T ss_pred             CCCEEEEEcCCCCcccCCHHHHHHhcccceeeEEecCCCEEcCHHHHHHHHHHhCcC
Confidence            689999998854    5688999999999999996 679999999999999999985

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.5e-10  Score=95.17  Aligned_cols=50  Identities=32%  Similarity=0.651  Sum_probs=46.7

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF   50 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~   50 (1012)
                      |||+.+.|++..   .+++|+++||.|+||+|+|||.+|+||.||++||+++|
T Consensus        26 i~~e~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~l~ES~aI~~yL~~~y   78 (79)
T d1ljra2          26 IPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKY   78 (79)
T ss_dssp             CCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHHHHHT
T ss_pred             CCCEEEeeeccccccCCHHHHHhhhhcceeEEEeCCcEEEcHHHHHHHHHHHc
Confidence            689999999876   46899999999999999999999999999999999998

>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.86  E-value=5.8e-10  Score=100.15  Aligned_cols=46  Identities=22%  Similarity=0.371  Sum_probs=39.6

Q ss_pred             CCeeeeeccC------------CceEEEEEecCCc-----hHHHHHHHHHHhccCCcccCCcC
Q psy3752         534 NNNLISYLHD------------NKIGVIVEYNGDN-----ESAVKDVAMHIAAMKPIALSSDQ  579 (1012)
Q Consensus       534 g~~i~~y~H~------------~~~g~~v~~~~~~-----~~~~~~~amhi~a~~p~~~~~~~  579 (1012)
                      |..||+|+|+            ||+||||.++++.     ++++|+||||||||+|.++++.+
T Consensus         1 G~~igsYiHg~~~~~~~~~~~lGkig~lv~~~~~~~~~~~~~l~k~iAmhIaA~~P~~i~~~~   63 (109)
T d1xb2b3           1 GFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLD   63 (109)
T ss_dssp             TEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCGGGCHHHHHHHHHHHHHHCCSBCCCTT
T ss_pred             CCEEEEEeCCCcccccccccccccEEEEEEEccCCCccCHHHHHHHHHHHHHhcCCcccCccc
Confidence            5579999997            5999999998753     57999999999999999998654

>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.9e-10  Score=108.63  Aligned_cols=64  Identities=14%  Similarity=0.308  Sum_probs=55.6

Q ss_pred             HHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhh-----ccccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         108 ITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDY-----YGINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       108 ~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~-----~~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      ..+|+.|++++||+|+++|+|||+++|+|.++..     .++++...||+|.+|+++|.+||+|+++++
T Consensus        65 ~~~~~~l~~~~fl~Gd~~t~aDi~l~p~l~r~~~~~~~~~~~~~~~~~p~l~~w~~~l~~rpsf~~T~~  133 (149)
T d1k0ma1          65 SAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCP  133 (149)
T ss_dssp             HHHHHSCCCCSSSSSSSCCHHHHHHHHHHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHTSHHHHTTSC
T ss_pred             HHHHHhhcCCcccCCCCCcHHHHHHHHHHHHHHhhhcccccchhhhcChHHHHHHHHHHCChHHHHhCC
Confidence            3456677789999999999999999999987753     356777889999999999999999999986

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=5.9e-10  Score=97.88  Aligned_cols=52  Identities=19%  Similarity=0.369  Sum_probs=47.7

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEe---CCEeeccHHHHHHHHhhhCCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVE---RDLILYESNIINEYIDERFPY   52 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~d---dg~~I~ES~aIl~YL~~~~p~   52 (1012)
                      |||+.+.|++..   ++++|+++||.|+||+|+|   ||.+|+||.||++||+++|+.
T Consensus        29 i~ye~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~~~~l~ES~aI~~YL~~~y~~   86 (92)
T d1k0da2          29 FHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLHLVNKYYK   86 (92)
T ss_dssp             CCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeccCCcccCHHHHHHhhccccceeEEecccceEEcCHHHHHHHHHHHhCc
Confidence            689999999876   4689999999999999996   789999999999999999964

>d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Arc1p N-terminal domain-like
domain: GU4 nucleic-binding protein 1, Arc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=5e-10  Score=102.03  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=77.2

Q ss_pred             EeeccHHHHHHHHhhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHhc
Q psy3752          34 LILYESNIINEYIDERFPYPQLMSSDPLMRARARLMLLNFEKEIFIHLYMLENERNKTSIKGYKRAREEIRDRLITLAPL  113 (1012)
Q Consensus        34 ~~I~ES~aIl~YL~~~~p~~~L~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~Le~~  113 (1012)
                      .+++||.+|.+|+..         -++.+.+++.+|......                         .++.+.|+.||.+
T Consensus         4 ~~~fes~a~~~Y~~~---------~t~~~~a~~~qw~~~~~~-------------------------~~~~~~L~~Ln~~   49 (118)
T d2hrkb1           4 VTKFESLIISKYPVS---------FTKEQSAQAAQWESVLKS-------------------------GQIQPHLDQLNLV   49 (118)
T ss_dssp             HHHHHTSGGGGCCCC---------CCHHHHHHHHHHHHHHHH-------------------------TCTGGGHHHHHHH
T ss_pred             HHHhhcchhhhhhhc---------cCchHHHHHHHHHHHHHh-------------------------hHHHHHHHHHHHH
Confidence            467899999888422         356788888888543321                         1234678899999


Q ss_pred             ccCCCcccCC-CcCHHHHHHHHHhhhhhhc-------cccccCCCchhHHHHHHHhcCCccccccc
Q psy3752         114 FLKNKYMLGD-EFSMLDVVIAPLLWRLDYY-------GINLSKSASPLIKYAERIFSRPSYMESLT  171 (1012)
Q Consensus       114 L~~~~fL~Gd-~~TlADi~l~~~L~~l~~~-------~~~l~~~~P~L~aw~~ri~~rp~~~~~lt  171 (1012)
                      |.++.|++|+ ++|+||+++|+.+..+...       +..-...||+|.+|++++.++|++.++..
T Consensus        50 L~~~~~l~g~~~~T~ADi~~f~~l~~~~~~~~~~~k~~~~~l~~yphI~RW~~~I~~lp~v~~~~k  115 (118)
T d2hrkb1          50 LRDNTFIVSTLYPTSTDVHVFEVALPLIKDLVASSKDVKSTYTTYRHILRWIDYMQNLLEVSSTDK  115 (118)
T ss_dssp             HHHCSSTTSCSSCCHHHHHHHHHHHHHHHHHHHTCSSTTHHHHHSHHHHHHHHHHHHHTTCCTTTS
T ss_pred             HccCCeEeeCCcCCHHHHHHHHHHHHHHHhhhhhhhcccccccccHHHHHHHHHHHhcccCCcccc
Confidence            9999999997 7999999999988654321       11112359999999999999999988654

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=98.70  E-value=6.9e-09  Score=87.56  Aligned_cols=50  Identities=20%  Similarity=0.260  Sum_probs=44.6

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +||+.+.++..+ .+++++.||+|+||+|++||.+|+||.||++||+++|+
T Consensus        26 i~~e~~~~~~~~-~~~~~~~~p~g~lPvL~~~~~~l~qS~AI~~YLa~k~g   75 (77)
T d1tu7a2          26 IKFIDDRIAKDD-FSSIKSQFQFGQLPCLYDGDQQIVQSGAILRHLARKYN   75 (77)
T ss_dssp             CCCEEEEECGGG-STTTGGGSTTSCSCEEEETTEEEESHHHHHHHHHHHTT
T ss_pred             CCceeeeccccc-chhhcccCCCCCCCEEEECCEEEEcHHHHHHHHHHHhC
Confidence            689988887654 45688999999999999999999999999999999985

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.1e-08  Score=88.04  Aligned_cols=51  Identities=16%  Similarity=0.253  Sum_probs=45.0

Q ss_pred             CceEEEEecCCCC---------CchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNK---------PDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~---------~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +||+.+.+++.+.         .+++++.||+|+||+|+|+|.+|+||.||++||+++|.
T Consensus        25 i~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~~g~~l~eS~AIl~YLa~k~n   84 (84)
T d2c4ja2          25 SSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAILRYIARKHN   84 (84)
T ss_dssp             CCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHHHHHHHHTT
T ss_pred             CCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEEECCEEEecHHHHHHHHHHhcC
Confidence            6899999998652         34578899999999999999999999999999999973

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=98.67  E-value=4.4e-09  Score=88.88  Aligned_cols=51  Identities=16%  Similarity=0.182  Sum_probs=44.2

Q ss_pred             CceEEEEecCCC--CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFN--KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~--~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      ++||.+.+++.+  ..+++...+|+|+||+|++||.+|+||.||++||+++|.
T Consensus        25 i~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~yLa~k~n   77 (77)
T d1gula2          25 VEFDEEFLETKEQLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHYIADKHN   77 (77)
T ss_dssp             CCCEEEEECSHHHHHHHHHTTCSTTSCSCEEEETTEEEESHHHHHHHHHHHTT
T ss_pred             CCceEEeeccccccchhhhcccCCCCCCCEEEECCEeeecHHHHHHHHHHHcC
Confidence            689999998754  235567789999999999999999999999999999983

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.5e-09  Score=88.87  Aligned_cols=51  Identities=22%  Similarity=0.343  Sum_probs=45.3

Q ss_pred             CceEEEEecCCC-CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFN-KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~-~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      |||+.+.++..+ ..+++...+|+|+||+|++||.+|+||.||++||+++|+
T Consensus        26 i~ye~~~v~~~~~~~~~~~~~~p~g~vP~L~~~g~~i~eS~aI~~yLa~~~G   77 (77)
T d2a2ra2          26 QSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLG   77 (77)
T ss_dssp             CCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHHHHHHTT
T ss_pred             CCcEEEEecccccccccccccCCCCCCCEEEECCEeeecHHHHHHHHHHhcC
Confidence            689999998765 345678899999999999999999999999999999985

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=98.64  E-value=9.9e-09  Score=86.08  Aligned_cols=50  Identities=16%  Similarity=0.153  Sum_probs=44.4

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +||+.+.++... .+++++.+|+|+||+|++||.+|+||.||++||+++|+
T Consensus        26 i~ye~~~~~~~~-~~~~~~~~p~g~lPvL~~~g~~i~eS~aI~~yL~~k~G   75 (75)
T d2gsqa2          26 EEFTDRVVEMAD-WPNLKATMYSNAMPVLDIDGTKMSQSMCIARHLAREFG   75 (75)
T ss_dssp             CCCEEEECCTTT-HHHHGGGSGGGSSCEEEETTEEECCHHHHHHHHHHHTT
T ss_pred             CCchhhcccccc-chhhhhccccCCcCEEEECCeeeecHHHHHHHHHHHcC
Confidence            689999887543 45688899999999999999999999999999999985

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=98.62  E-value=7.5e-09  Score=87.82  Aligned_cols=50  Identities=20%  Similarity=0.260  Sum_probs=43.3

Q ss_pred             CceEEEEecCCC--CCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752           1 MDFEIRDIDLFN--KPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF   50 (1012)
Q Consensus         1 I~ye~~~Vd~~~--~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~   50 (1012)
                      +||+.+.++...  ..+++...||+|+||+|++||.+|+||.||++||+++|
T Consensus        27 v~yed~~~~~~~~~~~~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~YLa~k~   78 (79)
T d1k3ya2          27 VEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYIASKY   78 (79)
T ss_dssp             CCCEEEEECSHHHHHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHHHHHHT
T ss_pred             CCceEEEecchhhhhhhcccccCCCCCCCEEEECCeEEEcHHHHHHHHHHhc
Confidence            689988887643  23557788999999999999999999999999999997

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=98.57  E-value=3.5e-08  Score=84.56  Aligned_cols=52  Identities=33%  Similarity=0.602  Sum_probs=47.9

Q ss_pred             CceEEEEecCCCCCchhhhcCCC-CCccEEEeCCEeeccHHHHHHHHhhhCCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPY-GQVPILVERDLILYESNIINEYIDERFPY   52 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~-gkVPvL~ddg~~I~ES~aIl~YL~~~~p~   52 (1012)
                      |+|+.+.+++...+++|++.||. +++|++.+||.+|+||.+|++||+++||+
T Consensus        27 i~~e~~~v~~~~~~~~~~~~~~~~~~~p~l~~dg~~i~eS~~I~~YL~e~~p~   79 (83)
T d1gwca2          27 LSYEDVEEDLYKKSELLLKSNPVHKKIPVLIHNGAPVCESMIILQYIDEVFAS   79 (83)
T ss_dssp             CCCEEEECCTTSCCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEeccchhHHHHHHHhccCCCceeecCCceEcCHHHHHHHHHHHcCC
Confidence            68999999998889999999985 57899999999999999999999999986

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.57  E-value=1.3e-08  Score=85.51  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      |||+.+.++... .+++.+.+|+|+||+|++||.+|+||.||++||+++++
T Consensus        27 i~yed~~~~~~~-~~~~~~~~p~g~lP~l~~~g~~l~qS~aI~~YLa~k~G   76 (76)
T d1m0ua2          27 QEYEDVRVTRDE-WPALKPTMPMGQMPVLEVDGKRVHQSISMARFLAKTVG   76 (76)
T ss_dssp             CCCEEEEECTTT-HHHHGGGSGGGCSCEEEETTEEEECHHHHHHHHHHHHT
T ss_pred             CCCEEecCChhh-hhhhhccCcCCCCcEEEECCcccccHHHHHHHHHHhcC
Confidence            689999988643 45688999999999999999999999999999999864

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=1e-08  Score=85.63  Aligned_cols=47  Identities=23%  Similarity=0.339  Sum_probs=39.5

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEe-CCEeeccHHHHHHHHhhh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDER   49 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~d-dg~~I~ES~aIl~YL~~~   49 (1012)
                      ++|+.  ++.+.+++||+++||.|+||+|++ +|.+|+||.||++||++.
T Consensus        26 ~d~~~--~~~~~~~~~~~~~nP~gkVP~L~~~~g~~l~ES~aI~~YL~~l   73 (75)
T d1nhya2          26 LDVKV--VTPDAAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYLVKL   73 (75)
T ss_dssp             CCCEE--ECGGGCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHHHHH
T ss_pred             ccccc--cCcccCCHHHHHhCcCCCCCeEEeCCeeEecCHHHHHHHHHHh
Confidence            34554  445567899999999999999996 589999999999999875

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2e-08  Score=83.90  Aligned_cols=48  Identities=27%  Similarity=0.425  Sum_probs=42.4

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDER   49 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~   49 (1012)
                      |||+.+.++.. ..+++.+.||+|+||+|++||.+|+||.||++||+++
T Consensus        26 i~~e~~~~~~~-~~~~~~~~~p~g~vP~L~~~g~~l~qS~AI~~yLar~   73 (74)
T d2cvda2          26 IQYEDHRIEQA-DWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLTKN   73 (74)
T ss_dssp             CCCEEEEECGG-GHHHHHTTSTTSCSCEEEETTEEEECHHHHHHHHHTT
T ss_pred             CCCEecccccc-cchhhcccCCCCCcCEEEECCEEEEcHHHHHHHHccc
Confidence            68998888754 3566888999999999999999999999999999875

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=98.55  E-value=6.1e-09  Score=88.20  Aligned_cols=50  Identities=18%  Similarity=0.328  Sum_probs=41.9

Q ss_pred             CceEEEEecCCCC--CchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy3752           1 MDFEIRDIDLFNK--PDNIFRMNPYGQVPILVERDLILYESNIINEYIDERF   50 (1012)
Q Consensus         1 I~ye~~~Vd~~~~--~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~   50 (1012)
                      +||+.+.++....  .+++...+|+|+||+|++||.+|+||.||++||+++|
T Consensus        27 i~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~rYLa~ky   78 (78)
T d1b48a2          27 VEFEEEFLETREQYEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSYLAAKY   78 (78)
T ss_dssp             CCCCCCBCCCHHHHHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHHHHHHT
T ss_pred             CCcEEEEEcchhhhcchhhcccccCCCCCEEEeCCeEEECHHHHHHHHHhhC
Confidence            5788877775442  2446678999999999999999999999999999986

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.53  E-value=3e-08  Score=85.42  Aligned_cols=51  Identities=25%  Similarity=0.448  Sum_probs=44.3

Q ss_pred             CceEEEEecCCCCC------chhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKP------DNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~------~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +||+.+.+++.+..      .++...+|+|++|+|+|||.+|+||.||++||+++|+
T Consensus        28 i~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI~~yLa~k~g   84 (85)
T d1okta2          28 IEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVRYLSKKYN   84 (85)
T ss_dssp             CCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHHHHHHHTT
T ss_pred             CCceEEEEcccccchhhhhhhhhcccccCCCCCeeecCCCEEecHHHHHHHHHHHcC
Confidence            68999999986522      3456678999999999999999999999999999985

>d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=98.53  E-value=2.1e-08  Score=85.20  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=43.5

Q ss_pred             CceEEEEecCCCCC----chhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKP----DNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~----~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +||+.+.++...+.    +.+...+|+|++|+|+|||..|+||.||++||+++|+
T Consensus        25 i~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d~g~~l~qS~AI~ryLa~k~~   79 (80)
T d1duga2          25 EKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHN   79 (80)
T ss_dssp             CCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHHHHHHTT
T ss_pred             CCceEEEEecccccccchhhhhccCCCcccceeccCCeeehhHHHHHHHHHHHcC
Confidence            68999999986632    2345567999999999999999999999999999985

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=4.2e-08  Score=82.18  Aligned_cols=50  Identities=26%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEe-CCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVE-RDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~d-dg~~I~ES~aIl~YL~~~~p   51 (1012)
                      |+|+.+.++. ..++||.++||.|+||+|++ ||.+|+||.+|++||++.++
T Consensus        24 i~~e~~~~~~-~~~~~~~~~~p~~~VP~L~~~dg~~i~eS~~I~~yLd~~~G   74 (75)
T d1g7oa2          24 IPVELHVLLN-DDAETPTRMVGQKQVPILQKDDSRYMPESMDIVHYVDKLDG   74 (75)
T ss_dssp             CCCEEEECCT-TTTHHHHHHHSSSCCCEEEETTTEEEECHHHHHHHHHHHTT
T ss_pred             CCcccccccc-cchHHHHHhCCCCceEEEEEcCCCEEecHHHHHHHHHHhhC
Confidence            6899888754 46789999999999999996 67999999999999999875

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=98.50  E-value=2e-08  Score=84.60  Aligned_cols=50  Identities=24%  Similarity=0.301  Sum_probs=43.5

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +||+.+.++... .++++..+|+|+||+|++||.+|+||.||++||+++|+
T Consensus        27 i~ye~~~~~~~~-~~~~~~~~p~g~lPvL~~~g~~i~qS~AI~~yLa~k~G   76 (77)
T d1tw9a2          27 QKYEDVRLTQET-FVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLAKTFG   76 (77)
T ss_dssp             CCCEEEEECHHH-HGGGGGGSTTSCSCEEEETTEEEECHHHHHHHHHHHHT
T ss_pred             CCceeeeccccc-chhhhhhcccCCCCEEEECCEEEEcHHHHHHHHHHHhC
Confidence            688988887543 34578899999999999999999999999999999875

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=98.37  E-value=9.4e-08  Score=81.12  Aligned_cols=51  Identities=14%  Similarity=0.156  Sum_probs=43.0

Q ss_pred             CceEEEEecCCCCC----chhhhcCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKP----DNIFRMNPYGQVPILVERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~----~~~~~inP~gkVPvL~ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +|||.+.+++..++    +.+...+|++++|+++|+|.+|+||.||++||+++|+
T Consensus        25 v~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~g~~l~qS~AI~~yLa~k~g   79 (80)
T d1fhea2          25 EEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVAIMRYIADKHG   79 (80)
T ss_dssp             CCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEECSSCEEESTTHHHHHHHHTTT
T ss_pred             CCCEEEEeccccchhcchhhhhccCCCcceeeeecCCeEEeCHHHHHHHHHHHhC
Confidence            68999999876533    2234468999999999999999999999999999985

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.27  E-value=9.4e-08  Score=82.43  Aligned_cols=51  Identities=18%  Similarity=0.352  Sum_probs=42.3

Q ss_pred             CceEEEEecCCC---CCchhhhcCCCCCccEEEe--CCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFN---KPDNIFRMNPYGQVPILVE--RDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~---~~~~~~~inP~gkVPvL~d--dg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +||+.+.++...   ..+++++.||++++|+|++  ++.+|+||.||++||+++|+
T Consensus        31 ~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~g~~~l~qS~AI~~YLa~k~~   86 (87)
T d2fnoa2          31 CSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAIAIYLGERLD   86 (87)
T ss_dssp             CCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHHHHHHHHHTT
T ss_pred             CcceeeccchhHHHHHhhcccccCCCCCCCEEEecCCCeeeehHHHHHHHHHHHhC
Confidence            578877776532   4577899999999999997  34899999999999999984

>d1oe8a2 c.47.1.5 (A:4-84) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]

Probab=97.78  E-value=2.2e-06  Score=72.54  Aligned_cols=50  Identities=20%  Similarity=0.280  Sum_probs=37.9

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEE-----eCCEeeccHHHHHHHHhhhCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILV-----ERDLILYESNIINEYIDERFP   51 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~-----ddg~~I~ES~aIl~YL~~~~p   51 (1012)
                      +||+.+.++...+ ++.+...|++++|++.     ++|.+|+||.||++||+++|.
T Consensus        26 v~ye~~~~~~~~~-~~~k~~~~~~~lP~~~~p~l~~~~~~l~qS~AI~~YLa~k~~   80 (81)
T d1oe8a2          26 VNYEDERISFQDW-PKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARYMAKKHH   80 (81)
T ss_dssp             CCCEEEECCTTTH-HHHGGGSTTSCSCEEEEECTTCCEEEEESHHHHHHHHHHHTT
T ss_pred             CCceeEeccchhh-HHhhhcccccCCCcccCCccccCCEEEEcHHHHHHHHHHHhC
Confidence            6899998876542 3345556667766665     467899999999999999984

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=97.77  E-value=3.8e-06  Score=75.94  Aligned_cols=52  Identities=19%  Similarity=0.377  Sum_probs=43.3

Q ss_pred             CceEEEEecCCCCCchhhhcCCCCCccEEEe----CCEeeccHHHHHHHHhhhCCCCC
Q psy3752           1 MDFEIRDIDLFNKPDNIFRMNPYGQVPILVE----RDLILYESNIINEYIDERFPYPQ   54 (1012)
Q Consensus         1 I~ye~~~Vd~~~~~~~~~~inP~gkVPvL~d----dg~~I~ES~aIl~YL~~~~p~~~   54 (1012)
                      |||+.+.+++..++  .+..||.++||+|++    +|.+++||.+|++||+++||+..
T Consensus        26 l~~~~~~v~~~~~~--~~~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL~~~~~~~~   81 (113)
T d1z9ha2          26 LPYQVVEVNPVLRA--EIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQ   81 (113)
T ss_dssp             CCEEEEECCTTTCG--GGTTCSCCSSCEEEEEETTEEEEECSHHHHHHHHHHHHHHCC
T ss_pred             CeeEEeccCcccch--hhccCccccccccccccCCCceEeecHHHHHHHHHHHCCCCC
Confidence            68999999876543  467899999999983    34899999999999999998543

>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=97.76  E-value=1.3e-05  Score=75.94  Aligned_cols=63  Identities=11%  Similarity=0.133  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHH-hcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHHHHhc
Q psy3752         100 REEIRDRLITLA-PLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFS  162 (1012)
Q Consensus       100 ~~~l~~~L~~Le-~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~ri~~  162 (1012)
                      +..+...|+.++ ..+++++|++|++|++||+++++.+.++... +++...++|++.+|++||.+
T Consensus        92 r~~L~~~ld~f~~~~l~~~~F~gGd~P~lADlavfg~l~~~~~~~~f~~l~~~p~i~~W~~RMk~  156 (161)
T d1z9ha1          92 REDLYEAADKWVAAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLDAFDDLMQHTHIQPWYLRVER  156 (161)
T ss_dssp             HHHHHHHHHHHHHHHCSSCSBTTBTSCCHHHHHHHHHHHTTTTSHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCccCCCCCcHHHHHHHhhhhhhhhccccchhccCCcHHHHHHHHHH
Confidence            455556665544 4557789999999999999999999998755 45544568999999999964

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0044  Score=43.91  Aligned_cols=27  Identities=19%  Similarity=-0.012  Sum_probs=25.4

Q ss_pred             ccccChHHHHHHHHHhcCCHHHHHHHH
Q psy3752         400 KTLAPIMECKKALIEANGKLSKAEEIL  426 (1012)
Q Consensus       400 ~t~~~~~~~k~al~~~~~d~~~a~~~l  426 (1012)
                      +.|++...|++||.+++||+|.|++||
T Consensus        13 ~MGF~~~~a~~AL~~~~~N~e~A~~~L   39 (41)
T d1oqya1          13 SMGYERERVVAALRASYNNPHRAVEYL   39 (41)
T ss_dssp             TTTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred             HcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            378999999999999999999999998

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.011  Score=43.93  Aligned_cols=28  Identities=25%  Similarity=0.235  Sum_probs=25.3

Q ss_pred             ccccChHHHHHHHHHhcC-CHHHHHHHHH
Q psy3752         400 KTLAPIMECKKALIEANG-KLSKAEEILR  427 (1012)
Q Consensus       400 ~t~~~~~~~k~al~~~~~-d~~~a~~~l~  427 (1012)
                      +.|.+-..|++||..++| |+|.|.+||-
T Consensus        21 ~MGF~~~~a~~AL~~t~n~~ve~A~~WLl   49 (51)
T d2cpwa1          21 SMGFPRARAQKALASTGGRSVQTACDWLF   49 (51)
T ss_dssp             HHTCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            368899999999999987 9999999995

>d1g7oa1 a.45.1.1 (A:76-215) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.13  Score=46.31  Aligned_cols=65  Identities=28%  Similarity=0.387  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHhcccCCCcccCCCcCHHHHHHHHHhhhhhhc-cccccCCCchhHHHHHHHhcCCcc
Q psy3752          98 RAREEIRDRLITLAPLFLKNKYMLGDEFSMLDVVIAPLLWRLDYY-GINLSKSASPLIKYAERIFSRPSY  166 (1012)
Q Consensus        98 ~~~~~l~~~L~~Le~~L~~~~fL~Gd~~TlADi~l~~~L~~l~~~-~~~l~~~~P~L~aw~~ri~~rp~~  166 (1012)
                      ....++...|..|+..+..... .+..+|+-|+.+||.|+.+... |..++   |++.+|+++|+++..+
T Consensus        67 ~li~~l~~~L~~L~~ll~~~~~-~~~~ls~DDi~lFp~LR~ltivkgi~~p---~~v~~Y~~~~s~~t~V  132 (140)
T d1g7oa1          67 GLIKNISDDLRALDKLIVKPNA-VNGELSEDDIQLFPLLRNLTLVAGINWP---SRVADYRDNMAKQTQI  132 (140)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSSC-TTSSCCHHHHHHHHHHHHHHTSTTSCCC---HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHhCccc-cCCCccHHHHHHHHHHhhhHhhcCCCCC---HHHHHHHHHHHHHhCC
Confidence            4456677778888777765444 4456999999999999988655 54443   6799999999887654

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.011  Score=46.21  Aligned_cols=30  Identities=7%  Similarity=-0.034  Sum_probs=27.5

Q ss_pred             ccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752         400 KTLAPIMECKKALIEANGKLSKAEEILRIK  429 (1012)
Q Consensus       400 ~t~~~~~~~k~al~~~~~d~~~a~~~l~~~  429 (1012)
                      ..|.+..+|++||..++||+|.|++||-..
T Consensus        28 ~MGF~~~~a~~AL~~~~~n~e~A~~~Lls~   57 (63)
T d1wgna_          28 NMGYSYECVLRAMKKKGENIEQILDYLFAH   57 (63)
T ss_dssp             HHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            368899999999999999999999999875

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.018  Score=45.01  Aligned_cols=31  Identities=16%  Similarity=0.143  Sum_probs=28.1

Q ss_pred             ccccChHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy3752         400 KTLAPIMECKKALIEANGKLSKAEEILRIKL  430 (1012)
Q Consensus       400 ~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~  430 (1012)
                      ..|++...|++||..++||+++|++||-+..
T Consensus        18 ~MGF~~~~a~~AL~~~~~~~e~A~~wL~~~~   48 (63)
T d1wjia_          18 EMGFSKEASRQALMDNGNNLEAALNVLLTSN   48 (63)
T ss_dssp             TTTCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred             HcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence            3589999999999999999999999998863

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.27  E-value=0.027  Score=45.22  Aligned_cols=30  Identities=27%  Similarity=0.163  Sum_probs=27.0

Q ss_pred             ccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752         400 KTLAPIMECKKALIEANGKLSKAEEILRIK  429 (1012)
Q Consensus       400 ~t~~~~~~~k~al~~~~~d~~~a~~~l~~~  429 (1012)
                      ..|++...|++||..++||+|.|++||-..
T Consensus        38 ~MGF~~~~a~~AL~~~~~n~e~A~~~Ll~~   67 (73)
T d1vg5a_          38 AMGFDRTQVEVALAAADDDLTVAVEILMSQ   67 (73)
T ss_dssp             TTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HhCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            367899999999999999999999999754

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.041  Score=38.58  Aligned_cols=35  Identities=31%  Similarity=0.320  Sum_probs=28.0

Q ss_pred             hhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHH
Q psy3752         394 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRI  428 (1012)
Q Consensus       394 v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~  428 (1012)
                      ...||..-=..-..|-+||.+++||+++|++.|.+
T Consensus         6 L~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           6 LEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            34455554466778999999999999999999975

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.47  E-value=0.04  Score=44.19  Aligned_cols=30  Identities=20%  Similarity=0.104  Sum_probs=27.5

Q ss_pred             ccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752         400 KTLAPIMECKKALIEANGKLSKAEEILRIK  429 (1012)
Q Consensus       400 ~t~~~~~~~k~al~~~~~d~~~a~~~l~~~  429 (1012)
                      ..|.+...|++||..++||++.|++||-..
T Consensus        38 ~MGF~~~~a~~AL~~~~~n~e~Av~~Lls~   67 (73)
T d1wiva_          38 SFGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             HHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             hcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            368899999999999999999999999864

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.65  E-value=0.091  Score=37.32  Aligned_cols=35  Identities=17%  Similarity=0.136  Sum_probs=27.8

Q ss_pred             hhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHH
Q psy3752         393 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILR  427 (1012)
Q Consensus       393 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~  427 (1012)
                      ...+||..-=..-..|-+||..++||++.|++.|-
T Consensus         8 QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll   42 (44)
T d2bwba1           8 QLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL   42 (44)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHh
Confidence            34455555446778899999999999999999883

>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Vibrio cholerae [TaxId: 666]

Probab=91.60  E-value=0.31  Score=46.78  Aligned_cols=134  Identities=13%  Similarity=0.105  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcc-cCc-cccChHHHHHHHHHHHHHHhhh
Q psy3752         211 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGG-LLTNFKTIKTSIQRLKEMDLFI  288 (1012)
Q Consensus       211 ~~t~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G-~lTN~~~~~~~~~~~~~~~~~~  288 (1012)
                      +.....+.+|+..+.....++|+|+|.|+..-+.-+ ..++......|-..|. ++. .++|...+....          
T Consensus        24 ~~~~~~I~~aa~~i~~~~~~~~kI~~~G~GgSa~~A-~h~a~~~~~~~~~~~~~~~~~~~~~~~~~ta~~----------   92 (191)
T d1x94a_          24 DHNIAQIEAAAKLIADSFKQGGKVLSCGNGGSHCDA-MHFAEELTGRYRENRPGYPGIAISDPSHLSCVS----------   92 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCEEEECSSSHHHHH-HHHHHHHHHHHCTTCSSCSEEEC--------------------
T ss_pred             hhhHHHHHHHHHHHHHHHHcCCEEEEEeCCCCcccH-hHHhHhccccccccccccceecccchhHHHHhh----------
Confidence            445577999999999999999999999998765333 2333222111111111 111 123332211110          


Q ss_pred             ccCcccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCc----hhHHHHHHhcCCCeEEEecCCCC----C
Q psy3752         289 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHS----P  360 (1012)
Q Consensus       289 ~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~----~~ai~Ea~~l~iP~i~l~Dt~~~----~  360 (1012)
                      .+..++..       +.++.    +.+      .+.-|++|++...-+    -.|++.|++.|++||+|+..+.+    .
T Consensus        93 nd~~~~~~-------~~~~l----~~~------~~~gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~i~it~~~~~~l~~~  155 (191)
T d1x94a_          93 NDFGYDYV-------FSRYV----EAV------GAKGDVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGL  155 (191)
T ss_dssp             -----CCH-------HHHHH----HHH------CCTTCEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTT
T ss_pred             cccchHHH-------HHHHH----HHh------CCCCCEEEEEecCCccccchhhHHHHHhCCCeEEEEecCCCCccccc
Confidence            11111110       11111    111      246799999976655    35677889999999999986542    2


Q ss_pred             CcceeeccCCCC
Q psy3752         361 DGINYVIPGNDD  372 (1012)
Q Consensus       361 ~~i~~~IP~N~~  372 (1012)
                      ..+.+.||..+.
T Consensus       156 ~D~~I~vps~~~  167 (191)
T d1x94a_         156 ADVEIRVPHFGY  167 (191)
T ss_dssp             SSEEEEESCCSC
T ss_pred             CCEEEEeCCCCc
Confidence            225555665444

>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.57  E-value=1.6  Score=41.53  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCc-cc-cChHHHHHHHHHHHHHHhhhccCc
Q psy3752         215 YMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGG-LL-TNFKTIKTSIQRLKEMDLFITNGS  292 (1012)
Q Consensus       215 ~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G-~l-TN~~~~~~~~~~~~~~~~~~~~~~  292 (1012)
                      ..+.+|+..+....+++|+|+|+|..--+..+-.-.+...+.+.....=+|. .| +|...+....          .+..
T Consensus        26 ~~i~~a~~~i~~~~~~~~kif~~GnGgSas~A~h~a~dl~~~~~~~r~~~~~i~l~~~~s~~ta~~----------Nd~g   95 (194)
T d1x92a_          26 PYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIA----------NDYS   95 (194)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHH----------HHTC
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHhhhhccccccccceeecccchhHHHhhc----------cccC
Confidence            5788999999999999999999999886655433333444433222222332 22 3433322211          1223


Q ss_pred             ccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCch----hHHHHHHhcCCCeEEEecCCCC-------CC
Q psy3752         293 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHS-------PD  361 (1012)
Q Consensus       293 ~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~----~ai~Ea~~l~iP~i~l~Dt~~~-------~~  361 (1012)
                      |+..       +.|+.+.          +.+.-|++|++...-+.    .|++.|+..|+.||+++-.+.+       ..
T Consensus        96 ~~~~-------f~~ql~~----------~~~~gDvli~iS~SG~S~nvi~a~~~Ak~~g~~~i~ltG~~gg~~~~l~~~~  158 (194)
T d1x92a_          96 YNEV-------FSKQIRA----------LGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPE  158 (194)
T ss_dssp             GGGT-------THHHHHH----------HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTT
T ss_pred             HHHH-------HHHHHHH----------hcCCCcEEEEEecCCCcchhHHHHHHHHhcCceEEEEEecCCchHhhhccCC
Confidence            3322       2333322          23578999999877544    4788899999999999976642       23


Q ss_pred             cceeeccCCCCc
Q psy3752         362 GINYVIPGNDDS  373 (1012)
Q Consensus       362 ~i~~~IP~N~~s  373 (1012)
                      .+.+.||.++-+
T Consensus       159 Di~i~ips~~~~  170 (194)
T d1x92a_         159 DVEIRVPSKITA  170 (194)
T ss_dssp             CEEEECSCSCHH
T ss_pred             CEEEEeCCCChH
Confidence            467888887543

>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Campylobacter jejuni [TaxId: 197]

Probab=91.52  E-value=1.6  Score=41.44  Aligned_cols=132  Identities=20%  Similarity=0.183  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCEEEEEecChhhHHHHHHHHHHcCCCeecCcccCcc-ccChHHHHHHHHHHHHHHhhhccCc
Q psy3752         214 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGL-LTNFKTIKTSIQRLKEMDLFITNGS  292 (1012)
Q Consensus       214 ~~~l~~a~~~i~~~~~~~~~ilfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~-lTN~~~~~~~~~~~~~~~~~~~~~~  292 (1012)
                      ...+.++...+....+++|+|+++|...-+..+..-.+...+.+-...+-+|+. |+.-..+..++-         .+..
T Consensus        25 ~~~I~~~~~~i~~~l~~ggkI~~~GnGgSa~~A~h~a~el~~~~~~~r~~l~~i~l~~~~a~~ta~~---------nd~~   95 (188)
T d1tk9a_          25 KGQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIG---------NDYG   95 (188)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHH---------HHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEECCCCcchhhhHHHHhhcCCccccccccccccCCCccccccccc---------cccC
Confidence            467888999999999999999999999887776666666665544444444533 332222211111         1222


Q ss_pred             ccCCCHHHHHHHHHHHHHHHhhhcCccCCCCCCCEEEEeCCCCch----hHHHHHHhcCCCeEEEecCCCCC----Ccce
Q psy3752         293 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP----DGIN  364 (1012)
Q Consensus       293 ~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~~iv~~~~~~~----~ai~Ea~~l~iP~i~l~Dt~~~~----~~i~  364 (1012)
                      |+.       .+.|+.+.+          .+.-|++|.+...-+.    .|++.|++.|++||+|+-.+.+.    ..+.
T Consensus        96 ~e~-------~f~~ql~~~----------~~~gDili~iS~SG~S~nii~a~~~Ak~~g~~ti~ltg~~~~~l~~~~D~~  158 (188)
T d1tk9a_          96 FEF-------VFSRQVEAL----------GNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHN  158 (188)
T ss_dssp             GGG-------HHHHHHHHH----------CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEE
T ss_pred             HHH-------HHHHHHHHh----------cCCCcEEEEecCCCCCchhHHHHHHHHhhcceEEEEeCCCCchhHHhCCEE
Confidence            221       133333222          2467999999876554    57889999999999998655432    2255


Q ss_pred             eeccCCC
Q psy3752         365 YVIPGND  371 (1012)
Q Consensus       365 ~~IP~N~  371 (1012)
                      +.||.++
T Consensus       159 i~i~s~~  165 (188)
T d1tk9a_         159 LVVPSDD  165 (188)
T ss_dssp             EEESCSC
T ss_pred             EEECCCC
Confidence            5666654

>d2fnoa1 a.45.1.1 (A:88-236) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: All alpha proteins
fold: GST C-terminal domain-like
superfamily: GST C-terminal domain-like
family: Glutathione S-transferase (GST), C-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.47  E-value=0.31  Score=42.38  Aligned_cols=110  Identities=10%  Similarity=0.071  Sum_probs=67.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccHHHHHHHHHHHHHHHHHHHhccc------CCCcccC-CCcCH
Q psy3752          56 MSSDPLMRARARLMLLNFEKEIFIHLYMLENERN-KTSIKGYKRAREEIRDRLITLAPLFL------KNKYMLG-DEFSM  127 (1012)
Q Consensus        56 ~p~~~~era~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~Le~~L~------~~~fL~G-d~~Tl  127 (1012)
                      +|.++..|+....++...++.++.-.   .+.+. -...+....+..++++....+|+...      +..|+.| +.+.+
T Consensus         1 ~p~~~~~ral~~Kvv~DanDVl~E~t---~~~G~qmWt~eaW~~f~pRL~rWm~ife~t~~R~gl~a~sGf~lGt~ap~~   77 (149)
T d2fnoa1           1 LPATVEGRTLSAKIVNDANDVLDELT---LNGGREMWTPEKWQEFVPRLQKWIRIFADTGARNGLSAASGFMLGTEKIGV   77 (149)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHT---GGGSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCTTSCSSCCH
T ss_pred             CCCcHHHHHHHHHHHhhhhHHHHHHH---hcCchhhccHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeecCCCccH
Confidence            47888888887777666655443321   12121 12223334455667777777776442      3479665 78999


Q ss_pred             HHHHHHHHhhhhhhc----cccccCCCchhHHHHHHHhcCCcccc
Q psy3752         128 LDVVIAPLLWRLDYY----GINLSKSASPLIKYAERIFSRPSYME  168 (1012)
Q Consensus       128 ADi~l~~~L~~l~~~----~~~l~~~~P~L~aw~~ri~~rp~~~~  168 (1012)
                      ||+..+.....+...    ...+...-|-+....+|+-++|+..+
T Consensus        78 aDivt~~Lw~tMtdr~P~l~~~L~~~AP~i~~L~~Ri~A~p~la~  122 (149)
T d2fnoa1          78 ADIVTAILWTTVADRFPAIKGIIEDTSPIIWGLSRRVVATAPLAA  122 (149)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHSHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccchhhhhhcCchHHHHHHHHhcCCcHHH
Confidence            999887655433221    11233445889999999999998765

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.45  E-value=0.066  Score=41.70  Aligned_cols=31  Identities=19%  Similarity=0.059  Sum_probs=27.7

Q ss_pred             ccccChHHHHHHHHHhcC-CHHHHHHHHHHhh
Q psy3752         400 KTLAPIMECKKALIEANG-KLSKAEEILRIKL  430 (1012)
Q Consensus       400 ~t~~~~~~~k~al~~~~~-d~~~a~~~l~~~~  430 (1012)
                      +.|.+...|++||..++| |+|.|++||-...
T Consensus        18 ~MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~   49 (64)
T d1whca_          18 EMGFPRGRAEKALALTGNQGIEAAMDWLMEHE   49 (64)
T ss_dssp             TTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             HcCCCHHHHHHHHHHhCCCCHHHHHHHHHHCC
Confidence            478999999999999977 8999999998753

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.076  Score=39.28  Aligned_cols=30  Identities=20%  Similarity=0.093  Sum_probs=26.5

Q ss_pred             ccccChHHHHHHHHHhc-CCHHHHHHHHHHh
Q psy3752         400 KTLAPIMECKKALIEAN-GKLSKAEEILRIK  429 (1012)
Q Consensus       400 ~t~~~~~~~k~al~~~~-~d~~~a~~~l~~~  429 (1012)
                      +.|.+-..|++||..++ +|++.|.+||-+.
T Consensus        11 ~MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h   41 (51)
T d2crna1          11 AMGFPVHTALKALAATGRKTAEEALAWLHDH   41 (51)
T ss_dssp             HTSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHCCCCHHHHHHHHHHc
Confidence            46889999999999985 4999999999875

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=90.90  E-value=0.1  Score=36.11  Aligned_cols=28  Identities=25%  Similarity=0.065  Sum_probs=24.7

Q ss_pred             cccChHHHHHHHHHhcCCHHHHHHHHHH
Q psy3752         401 TLAPIMECKKALIEANGKLSKAEEILRI  428 (1012)
Q Consensus       401 t~~~~~~~k~al~~~~~d~~~a~~~l~~  428 (1012)
                      .|..-.+.++||+++|||++.|.++|-.
T Consensus        14 MGF~e~~A~~AL~k~~wnleaAtN~LLd   41 (43)
T d2g3qa1          14 MGFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            5677788999999999999999999853

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.82  E-value=0.11  Score=37.83  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             hhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHh
Q psy3752         393 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK  429 (1012)
Q Consensus       393 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~  429 (1012)
                      ...+||..-=..-..|-+||..++||++.|++.|...
T Consensus        11 QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~   47 (50)
T d2dnaa1          11 EMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS   47 (50)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            4455665544677889999999999999999999764

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.78  E-value=0.16  Score=38.61  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=28.4

Q ss_pred             hhhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHH
Q psy3752         392 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR  427 (1012)
Q Consensus       392 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~  427 (1012)
                      .....|+..-=..-..|-+||..++||++.|+++|-
T Consensus        24 ~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll   59 (61)
T d1veja1          24 QELEELKALGFANRDANLQALVATDGDIHAAIEMLL   59 (61)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence            345555554445678899999999999999999984

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.86  E-value=0.35  Score=39.58  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=26.4

Q ss_pred             cccChHHHHHHHHHhc-CCHHHHHHHHHHhh
Q psy3752         401 TLAPIMECKKALIEAN-GKLSKAEEILRIKL  430 (1012)
Q Consensus       401 t~~~~~~~k~al~~~~-~d~~~a~~~l~~~~  430 (1012)
                      .|.+...|++||..++ +|++.|++||-+..
T Consensus        39 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~   69 (84)
T d1veka_          39 MGFSQLHCQKAAINTSNAGVEEAMNWLLSHM   69 (84)
T ss_dssp             HTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence            6788899999999986 59999999998764

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.20  E-value=0.39  Score=39.15  Aligned_cols=39  Identities=28%  Similarity=0.242  Sum_probs=36.3

Q ss_pred             hhhhhhcccccChHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy3752         393 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLG  431 (1012)
Q Consensus       393 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~a~~~l~~~~~  431 (1012)
                      .||+|.+.|+..-.+|-=||..||+|+..|+++|-+-+.
T Consensus        35 kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~~   73 (91)
T d1wj7a1          35 KVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP   73 (91)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred             HHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHHHhcCC
Confidence            688999999999999999999999999999999998653