Psyllid ID: psy3767

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEFLKKINKK
ccEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHccccEEEEEccccHHHHHHHHccccccEEcccEEccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHc
ccEEEEEccHHHHHHHHcccHHHHHHHcccEEEEEEccHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHcccEEEEEcccccccHHHHHHHcccccEcccEEEcccHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccccHHHcccccccEEccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHc
MQFDVITLFPEMFSAITQSGITRRAFEKKQYslnlwnprnfssnnyrkiddypygggvgmimlgKPIEDTITAIKKNIKKIpkiiymspqgkklTHNIIIKLLKESNLILLCGRYQAIDQRFLDNfideeisvgdfilsggelpAMMLIDAIVRLLPKVLNNKLNMQDSFinglldcsyytkpriylnmEVPIVLLsgnhkkikkwkrknslkitnkkrpDLIIKARKNKFLTCTDEEFLKKINKK
MQFDVITLFPEMFSAITQSGITRRAFEKKQyslnlwnprnfssnnyrKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIiymspqgkkLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRIYLNMEVPIVLLsgnhkkikkwkrknslkitnkkrpdliikarknkfltctdeeflkkinkk
MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAikknikkipkiiYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHkkikkwkrknslkITNKKRPDLIIKARKNKFLTCTDEEFLKKINKK
**FDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEFL******
MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEFLKKINK*
MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEFLKKINKK
MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEFLKKINKK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEFLKKINKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query246 2.2.26 [Sep-21-2011]
A6SVI6249 tRNA (guanine-N(1)-)-meth yes N/A 0.987 0.975 0.564 1e-89
A4G2T7248 tRNA (guanine-N(1)-)-meth yes N/A 0.987 0.979 0.576 3e-88
Q13VF0255 tRNA (guanine-N(1)-)-meth yes N/A 1.0 0.964 0.549 6e-81
B2T605255 tRNA (guanine-N(1)-)-meth yes N/A 1.0 0.964 0.545 9e-81
Q1LQE0260 tRNA (guanine-N(1)-)-meth yes N/A 1.0 0.946 0.553 1e-80
B1YV59264 tRNA (guanine-N(1)-)-meth yes N/A 1.0 0.931 0.525 2e-80
B2JF31255 tRNA (guanine-N(1)-)-meth yes N/A 0.995 0.960 0.54 3e-80
A4JCJ9264 tRNA (guanine-N(1)-)-meth yes N/A 0.995 0.928 0.523 6e-80
Q0BH67264 tRNA (guanine-N(1)-)-meth yes N/A 1.0 0.931 0.525 6e-80
A9ADS9264 tRNA (guanine-N(1)-)-meth yes N/A 0.995 0.928 0.515 8e-80
>sp|A6SVI6|TRMD_JANMA tRNA (guanine-N(1)-)-methyltransferase OS=Janthinobacterium sp. (strain Marseille) GN=trmD PE=3 SV=1 Back     alignment and function desciption
 Score =  329 bits (843), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 140/248 (56%), Positives = 197/248 (79%), Gaps = 5/248 (2%)

Query: 1   MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
           MQFDV+TLFPEMF+AITQSGITRRAFE+K+ +L+LWNPR+F+S+ +R +DD PYGGG GM
Sbjct: 1   MQFDVVTLFPEMFTAITQSGITRRAFEQKKCALSLWNPRDFTSDKHRTVDDRPYGGGPGM 60

Query: 61  IMLGKPIEDTITAIKKNIKK----IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
           +M+ KP+E  + A K    +     P+++Y+SPQGK LTH  +++L  E  L+LLCGRY+
Sbjct: 61  VMMVKPLEAAVQAAKARQTEQGLAAPRVVYLSPQGKALTHERVMQLTTEPGLVLLCGRYE 120

Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
           A+DQRFLD+ +DEEIS+GDF+LSGGE+PAM L+DA++R LP VL++  + ++DSF+NGLL
Sbjct: 121 AVDQRFLDSCVDEEISLGDFVLSGGEIPAMALMDAVIRQLPGVLHDDASAVEDSFVNGLL 180

Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
           DC +YT+P +Y    VP VL+ G+H +I+KW+R+ +L+ T +KRPDLI+KAR+   LT +
Sbjct: 181 DCPHYTRPEVYEGAAVPAVLMGGHHVEIEKWRRERALEATARKRPDLIVKAREAGLLTRS 240

Query: 236 DEEFLKKI 243
           DE+FL  +
Sbjct: 241 DEKFLSSM 248
Specifically methylates guanosine-37 in various tRNAs.
Janthinobacterium sp. (strain Marseille) (taxid: 375286)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2EC: 8
>sp|A4G2T7|TRMD_HERAR tRNA (guanine-N(1)-)-methyltransferase OS=Herminiimonas arsenicoxydans GN=trmD PE=3 SV=1 Back     alignment and function description
>sp|Q13VF0|TRMD_BURXL tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia xenovorans (strain LB400) GN=trmD PE=3 SV=1 Back     alignment and function description
>sp|B2T605|TRMD_BURPP tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=trmD PE=3 SV=1 Back     alignment and function description
>sp|Q1LQE0|TRMD_RALME tRNA (guanine-N(1)-)-methyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=trmD PE=3 SV=1 Back     alignment and function description
>sp|B1YV59|TRMD_BURA4 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=trmD PE=3 SV=1 Back     alignment and function description
>sp|B2JF31|TRMD_BURP8 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=trmD PE=1 SV=1 Back     alignment and function description
>sp|A4JCJ9|TRMD_BURVG tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=trmD PE=3 SV=1 Back     alignment and function description
>sp|Q0BH67|TRMD_BURCM tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=trmD PE=3 SV=1 Back     alignment and function description
>sp|A9ADS9|TRMD_BURM1 tRNA (guanine-N(1)-)-methyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=trmD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
399019424248 tRNA (guanine-N1)-methyltransferase [Her 0.987 0.979 0.564 1e-88
152980226249 tRNA (guanine-N(1)-)-methyltransferase [ 0.987 0.975 0.564 7e-88
134093876248 tRNA (guanine-N(1)-)-methyltransferase [ 0.987 0.979 0.576 2e-86
415947046251 tRNA (guanine-N(1)-)-methyltransferase [ 0.995 0.976 0.552 3e-86
300310839257 tRNA (Guanine-N(1)-)-methyltransferase [ 1.0 0.957 0.541 4e-86
409405344252 tRNA (Guanine-N(1)-)-methyltransferase [ 0.995 0.972 0.54 9e-86
398835669258 tRNA (guanine-N1)-methyltransferase [Her 0.987 0.941 0.556 1e-85
395761197248 tRNA (guanine-N(1)-)-methyltransferase [ 0.987 0.979 0.552 2e-85
340786359256 tRNA (Guanine37-N1) -methyltransferase [ 0.991 0.953 0.557 8e-85
445495373248 tRNA (guanine-N1-)-methyltransferase Trm 0.987 0.979 0.552 1e-83
>gi|399019424|ref|ZP_10721572.1| tRNA (guanine-N1)-methyltransferase [Herbaspirillum sp. CF444] gi|398098034|gb|EJL88327.1| tRNA (guanine-N1)-methyltransferase [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 140/248 (56%), Positives = 203/248 (81%), Gaps = 5/248 (2%)

Query: 1   MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
           MQFDV+TLFPEMFSA+TQSG+TRRA+E+K+++L+LWNPR+F+++N+R +DD PYGGG GM
Sbjct: 1   MQFDVVTLFPEMFSALTQSGVTRRAYEQKKWALSLWNPRDFTTDNHRTVDDRPYGGGPGM 60

Query: 61  IMLGKPIEDTITAIKKNIKKI----PKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
           +ML KP++ T+ A K+   ++    P+++Y+SPQGK LTH  +++  ++S ++LLCGRY+
Sbjct: 61  VMLAKPLQQTLAAAKQRQVELGLPAPRVVYLSPQGKPLTHQRVMQFSQDSGVVLLCGRYE 120

Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
           AIDQR LD+ +DEEIS+GDF+LSGGELPAM L+DA++R LP VLN+  + ++DSF+NGLL
Sbjct: 121 AIDQRLLDSHVDEEISLGDFVLSGGELPAMALMDAVIRQLPGVLNDGSSAVEDSFVNGLL 180

Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCT 235
           DC +YT+P  Y  + VP VL+ G+H +I+KW+R+ +L+ T KKRPDLI+KAR++  LT +
Sbjct: 181 DCPHYTRPEEYEGVAVPPVLMGGHHAEIEKWRRERALEATAKKRPDLIVKARQDGLLTKS 240

Query: 236 DEEFLKKI 243
           DE+FL  +
Sbjct: 241 DEKFLSSL 248

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|152980226|ref|YP_001352283.1| tRNA (guanine-N(1)-)-methyltransferase [Janthinobacterium sp. Marseille] gi|166200430|sp|A6SVI6.1|TRMD_JANMA RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase gi|151280303|gb|ABR88713.1| tRNA (guanine-N1)-methyltransferase [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|134093876|ref|YP_001098951.1| tRNA (guanine-N(1)-)-methyltransferase [Herminiimonas arsenicoxydans] gi|166200429|sp|A4G2T7.1|TRMD_HERAR RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName: Full=M1G-methyltransferase; AltName: Full=tRNA [GM37] methyltransferase gi|133737779|emb|CAL60824.1| tRNA (guanine-N(1)-)-methyltransferase) (M1G-methyltransferase) (tRNA [GM37] methyltransferase) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|415947046|ref|ZP_11556548.1| tRNA (guanine-N(1)-)-methyltransferase [Herbaspirillum frisingense GSF30] gi|407758133|gb|EKF68004.1| tRNA (guanine-N(1)-)-methyltransferase [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|300310839|ref|YP_003774931.1| tRNA (Guanine-N(1)-)-methyltransferase [Herbaspirillum seropedicae SmR1] gi|300073624|gb|ADJ63023.1| tRNA (Guanine-N(1)-)-methyltransferase protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|409405344|ref|ZP_11253806.1| tRNA (Guanine-N(1)-)-methyltransferase [Herbaspirillum sp. GW103] gi|386433893|gb|EIJ46718.1| tRNA (Guanine-N(1)-)-methyltransferase [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|398835669|ref|ZP_10593028.1| tRNA (guanine-N1)-methyltransferase [Herbaspirillum sp. YR522] gi|398215474|gb|EJN02036.1| tRNA (guanine-N1)-methyltransferase [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|395761197|ref|ZP_10441866.1| tRNA (guanine-N(1)-)-methyltransferase [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information
>gi|340786359|ref|YP_004751824.1| tRNA (Guanine37-N1) -methyltransferase [Collimonas fungivorans Ter331] gi|340551626|gb|AEK61001.1| tRNA (Guanine37-N1) -methyltransferase [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|445495373|ref|ZP_21462417.1| tRNA (guanine-N1-)-methyltransferase TrmD [Janthinobacterium sp. HH01] gi|444791534|gb|ELX13081.1| tRNA (guanine-N1-)-methyltransferase TrmD [Janthinobacterium sp. HH01] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
TIGR_CMR|SO_1359248 SO_1359 "tRNA (guanine-N1)-met 0.943 0.935 0.460 7.2e-52
UNIPROTKB|P0A873255 trmD "TrmD" [Escherichia coli 0.906 0.874 0.455 2.8e-50
UNIPROTKB|Q9KUF8247 trmD "tRNA (guanine-N(1)-)-met 0.983 0.979 0.417 2.8e-50
TIGR_CMR|VC_0563247 VC_0563 "tRNA (guanine-N1)-met 0.983 0.979 0.417 2.8e-50
TIGR_CMR|CPS_4067253 CPS_4067 "tRNA (guanine-N1)-me 0.983 0.956 0.443 7.4e-50
TIGR_CMR|CBU_0443246 CBU_0443 "tRNA (guanine-N1)-me 0.886 0.886 0.454 1e-45
TIGR_CMR|BA_3979244 BA_3979 "tRNA (guanine-N1)-met 0.979 0.987 0.361 1.7e-43
TIGR_CMR|GSU_0646245 GSU_0646 "tRNA (guanine-N1)-me 0.979 0.983 0.380 4.5e-43
TIGR_CMR|DET_0339248 DET_0339 "tRNA (guanine-N1)-me 1.0 0.991 0.368 5.2e-42
TIGR_CMR|CHY_1430253 CHY_1430 "tRNA (guanine-N1)-me 0.906 0.881 0.403 5.9e-41
TIGR_CMR|SO_1359 SO_1359 "tRNA (guanine-N1)-methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 110/239 (46%), Positives = 149/239 (62%)

Query:     1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
             M   VITLFPEMF A+T  G+T RA +     L+ WNPR+F+ + +  +DD PYGGG GM
Sbjct:     1 MWLGVITLFPEMFRAVTDFGVTGRAVKNGLLELHTWNPRDFTHDRHSTVDDRPYGGGPGM 60

Query:    61 IMLGKPIEDTITAXXXXXXXXXXXXYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
             +M+ +P+ D I A            Y+SPQG+KL    + +L K S LIL+CGRY+ ID+
Sbjct:    61 LMMVQPLRDAIHAARAAAGEDAKVIYLSPQGRKLDQQGVTELAKSSRLILVCGRYEGIDE 120

Query:   121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNM-QDSFINGLLDCSY 179
             R +   +DEE SVGD++LSGGELPAM +IDA+ RL+P VL  + +  QDSF +GLLDC +
Sbjct:   121 RIIQTEVDEEWSVGDYVLSGGELPAMTMIDAVSRLVPGVLGKQASAEQDSFSDGLLDCPH 180

Query:   180 YTKPRIYLNMEVPIVLLSGNHXXXXXXXXXXXXXITNKKRPDLIIKARKNKFLTCTDEE 238
             YT+P     ++VP VLLSGNH              T  +RP+L+    +N  L  TDE+
Sbjct:   181 YTRPESLDGLDVPAVLLSGNHEQIRLWRLQQSLGRTLLRRPELL----QN--LALTDEQ 233
GO:0006400 "tRNA modification" evidence=ISS
GO:0009019 "tRNA (guanine-N1-)-methyltransferase activity" evidence=ISS
UNIPROTKB|P0A873 trmD "TrmD" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUF8 trmD "tRNA (guanine-N(1)-)-methyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0563 VC_0563 "tRNA (guanine-N1)-methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4067 CPS_4067 "tRNA (guanine-N1)-methyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0443 CBU_0443 "tRNA (guanine-N1)-methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3979 BA_3979 "tRNA (guanine-N1)-methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0646 GSU_0646 "tRNA (guanine-N1)-methyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0339 DET_0339 "tRNA (guanine-N1)-methyltransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1430 CHY_1430 "tRNA (guanine-N1)-methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B4EAN4TRMD_BURCJ2, ., 1, ., 1, ., 2, 2, 80.52380.99590.9280yesN/A
Q1I5Z0TRMD_PSEE42, ., 1, ., 1, ., 2, 2, 80.46150.96740.952yesN/A
A3NC05TRMD_BURP62, ., 1, ., 1, ., 2, 2, 80.52191.00.9318yesN/A
B1YV59TRMD_BURA42, ., 1, ., 1, ., 2, 2, 80.52581.00.9318yesN/A
Q5NXM5TRMD_AROAE2, ., 1, ., 1, ., 2, 2, 80.52860.90240.8441yesN/A
C1DBG0TRMD_LARHH2, ., 1, ., 1, ., 2, 2, 80.47010.98370.9416yesN/A
B1JXU5TRMD_BURCC2, ., 1, ., 1, ., 2, 2, 80.51980.99590.9280yesN/A
A3MHR9TRMD_BURM72, ., 1, ., 1, ., 2, 2, 80.52191.00.9318yesN/A
Q21YL6TRMD_RHOFD2, ., 1, ., 1, ., 2, 2, 80.45930.98370.9758yesN/A
Q4ZWY7TRMD_PSEU22, ., 1, ., 1, ., 2, 2, 80.47760.90650.892yesN/A
Q1BY02TRMD_BURCA2, ., 1, ., 1, ., 2, 2, 80.51980.99590.9280yesN/A
Q2SXZ9TRMD_BURTA2, ., 1, ., 1, ., 2, 2, 80.52581.00.9318yesN/A
Q48LV8TRMD_PSE142, ., 1, ., 1, ., 2, 2, 80.47760.90650.892yesN/A
B2T605TRMD_BURPP2, ., 1, ., 1, ., 2, 2, 80.54581.00.9647yesN/A
A4JCJ9TRMD_BURVG2, ., 1, ., 1, ., 2, 2, 80.52380.99590.9280yesN/A
A1TND2TRMD_ACIAC2, ., 1, ., 1, ., 2, 2, 80.44440.99180.9568yesN/A
Q13VF0TRMD_BURXL2, ., 1, ., 1, ., 2, 2, 80.54981.00.9647yesN/A
B0KRI3TRMD_PSEPG2, ., 1, ., 1, ., 2, 2, 80.47540.95520.94yesN/A
Q31HX8TRMD_THICR2, ., 1, ., 1, ., 2, 2, 80.50670.90240.9367yesN/A
Q63S32TRMD_BURPS2, ., 1, ., 1, ., 2, 2, 80.52191.00.9318yesN/A
A2SES8TRMD_METPP2, ., 1, ., 1, ., 2, 2, 80.46420.98370.9453yesN/A
Q0KD79TRMD_CUPNH2, ., 1, ., 1, ., 2, 2, 80.54981.00.9461yesN/A
A6SVI6TRMD_JANMA2, ., 1, ., 1, ., 2, 2, 80.56450.98780.9759yesN/A
B1JDE3TRMD_PSEPW2, ., 1, ., 1, ., 2, 2, 80.46960.96740.952yesN/A
Q1GYT8TRMD_METFK2, ., 1, ., 1, ., 2, 2, 80.4840.97960.9128yesN/A
Q12CW4TRMD_POLSJ2, ., 1, ., 1, ., 2, 2, 80.44840.98370.9343yesN/A
A0K5P7TRMD_BURCH2, ., 1, ., 1, ., 2, 2, 80.51980.99590.9280yesN/A
Q3SGC2TRMD_THIDA2, ., 1, ., 1, ., 2, 2, 80.47430.93490.9745yesN/A
Q46Y84TRMD_CUPPJ2, ., 1, ., 1, ., 2, 2, 80.55060.98370.9307yesN/A
A2S4N8TRMD_BURM92, ., 1, ., 1, ., 2, 2, 80.52191.00.9318yesN/A
A4G2T7TRMD_HERAR2, ., 1, ., 1, ., 2, 2, 80.57660.98780.9798yesN/A
B2JF31TRMD_BURP82, ., 1, ., 1, ., 2, 2, 80.540.99590.9607yesN/A
A4SW75TRMD_POLSQ2, ., 1, ., 1, ., 2, 2, 80.50200.98370.9758yesN/A
A1V6J2TRMD_BURMS2, ., 1, ., 1, ., 2, 2, 80.52191.00.9318yesN/A
Q1LQE0TRMD_RALME2, ., 1, ., 1, ., 2, 2, 80.55371.00.9461yesN/A
Q39ID4TRMD_BURS32, ., 1, ., 1, ., 2, 2, 80.51190.99590.9280yesN/A
A3NXU1TRMD_BURP02, ., 1, ., 1, ., 2, 2, 80.52191.00.9318yesN/A
Q0BH67TRMD_BURCM2, ., 1, ., 1, ., 2, 2, 80.52581.00.9318yesN/A
Q47BI7TRMD_DECAR2, ., 1, ., 1, ., 2, 2, 80.48410.98370.9527yesN/A
Q7MBD6TRMD_CHRVO2, ., 1, ., 1, ., 2, 2, 80.46210.98370.9490yesN/A
Q8Y0V8TRMD_RALSO2, ., 1, ., 1, ., 2, 2, 80.54130.97560.9160yesN/A
Q62M52TRMD_BURMA2, ., 1, ., 1, ., 2, 2, 80.52191.00.9318yesN/A
A9ADS9TRMD_BURM12, ., 1, ., 1, ., 2, 2, 80.51580.99590.9280yesN/A
Q3JQ08TRMD_BURP12, ., 1, ., 1, ., 2, 2, 80.52191.00.9318yesN/A
B1Y0H7TRMD_LEPCP2, ., 1, ., 1, ., 2, 2, 80.45960.99180.9799yesN/A
B1XVN1TRMD_POLNS2, ., 1, ., 1, ., 2, 2, 80.50200.98370.9758yesN/A
B3R398TRMD_CUPTR2, ., 1, ., 1, ., 2, 2, 80.55371.00.9461yesN/A
A8FSE9TRMD_SHESH2, ., 1, ., 1, ., 2, 2, 80.48950.94300.9586yesN/A
Q88MV4TRMD_PSEPK2, ., 1, ., 1, ., 2, 2, 80.46960.96740.952yesN/A
A5W8C1TRMD_PSEP12, ., 1, ., 1, ., 2, 2, 80.46960.96740.952yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.963
3rd Layer2.1.1.310.946

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
PRK00026244 PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransfe 1e-132
COG0336240 COG0336, TrmD, tRNA-(guanine-N1)-methyltransferase 1e-118
TIGR00088233 TIGR00088, trmD, tRNA (guanine-N1)-methyltransfera 6e-94
PRK01037 357 PRK01037, trmD, tRNA (guanine-N(1)-)-methyltransfe 1e-61
PRK14599222 PRK14599, trmD, tRNA (guanine-N(1)-)-methyltransfe 2e-43
pfam01746185 pfam01746, tRNA_m1G_MT, tRNA (Guanine-1)-methyltra 2e-36
>gnl|CDD|234581 PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed Back     alignment and domain information 
 Score =  371 bits (956), Expect = e-132
 Identities = 121/247 (48%), Positives = 171/247 (69%), Gaps = 5/247 (2%)

Query: 1   MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
           M+ DV+TLFPEMF    +  I  RA EK    L + NPR+F+++ +R +DD PYGGG GM
Sbjct: 1   MRIDVLTLFPEMFPGPLEYSILGRALEKGLLELEVHNPRDFTTDKHRTVDDTPYGGGAGM 60

Query: 61  IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
           +M  +P+ D I A K    +  K+I +SPQGK  T     +L KE +LILLCGRY+ ID+
Sbjct: 61  VMKPEPLFDAIDAAKAAAGEKAKVILLSPQGKPFTQADARELAKEEHLILLCGRYEGIDE 120

Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLLDCSY 179
           R +++++DEEIS+GD++L+GGEL AM+LIDA+VRLLP VL N+ +  +DSF +GLL+  +
Sbjct: 121 RVIEHYVDEEISIGDYVLTGGELAAMVLIDAVVRLLPGVLGNEESAEEDSFSDGLLEYPH 180

Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF 239
           YT+P  +  M+VP VLLSGNH KI +W+RK SL+ T  +RPDL+ K      LT  D++ 
Sbjct: 181 YTRPAEFRGMKVPEVLLSGNHAKIARWRRKQSLERTKLRRPDLLEKLA----LTKEDKKL 236

Query: 240 LKKINKK 246
           L ++ K+
Sbjct: 237 LAELKKE 243

Length = 244
>gnl|CDD|223413 COG0336, TrmD, tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129196 TIGR00088, trmD, tRNA (guanine-N1)-methyltransferase Back     alignment and domain information
>gnl|CDD|234892 PRK01037, trmD, tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed Back     alignment and domain information
>gnl|CDD|173063 PRK14599, trmD, tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|216676 pfam01746, tRNA_m1G_MT, tRNA (Guanine-1)-methyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 246
PRK00026244 trmD tRNA (guanine-N(1)-)-methyltransferase; Revie 100.0
TIGR00088233 trmD tRNA (guanine-N1)-methyltransferase. S-adenos 100.0
COG0336240 TrmD tRNA-(guanine-N1)-methyltransferase [Translat 100.0
PRK14599222 trmD tRNA (guanine-N(1)-)-methyltransferase/unknow 100.0
PRK01037 357 trmD tRNA (guanine-N(1)-)-methyltransferase/unknow 100.0
PF01746186 tRNA_m1G_MT: tRNA (Guanine-1)-methyltransferase; I 100.0
PRK00103157 rRNA large subunit methyltransferase; Provisional 95.66
PF02590155 SPOUT_MTase: Predicted SPOUT methyltransferase; In 95.23
COG1576155 Uncharacterized conserved protein [Function unknow 94.73
TIGR00246153 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltran 93.66
PF03587202 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR00 83.84
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1.3e-121  Score=820.30  Aligned_cols=241  Identities=50%  Similarity=0.851  Sum_probs=233.6

Q ss_pred             CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767           1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK   80 (246)
Q Consensus         1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~   80 (246)
                      |+|+|+|||||||++++++||+|||+++|+|++++||+||||.|||++|||+||||||||||++||+++||++++....+
T Consensus         1 m~~~vlTlFPe~f~~~~~~si~grA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~epi~~al~~~~~~~~~   80 (244)
T PRK00026          1 MRIDVLTLFPEMFPGPLEYSILGRALEKGLLELEVHNPRDFTTDKHRTVDDTPYGGGAGMVMKPEPLFDAIDAAKAAAGE   80 (244)
T ss_pred             CEEEEEEEChHhhhhhhhccHHHHHHHCCCeEEEEEcchhccCCCCCCCCCCCCCCCccceecHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999753223


Q ss_pred             CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767          81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL  160 (246)
Q Consensus        81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL  160 (246)
                      +++||||||||++|||++|++||++++|||||||||||||||+++++|||||||||||||||+|||||||||+|||||||
T Consensus        81 ~~~vi~lsP~G~~f~Q~~a~~ls~~~~lillCGrYEGiDeRv~~~~vdeeiSiGDyVLtGGElaAmv~iDav~RllPGVl  160 (244)
T PRK00026         81 KAKVILLSPQGKPFTQADARELAKEEHLILLCGRYEGIDERVIEHYVDEEISIGDYVLTGGELAAMVLIDAVVRLLPGVL  160 (244)
T ss_pred             CCeEEEECCCCCcCCHHHHHHHhCCCCEEEEeccccChHHHHHhhhCcEEEeeccEEecCchHHHHHHHHHHHHcCCCcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHHHH
Q psy3767         161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF  239 (246)
Q Consensus       161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~~~  239 (246)
                      ||++|+ +|||+||||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||+++.+    +++++++
T Consensus       161 g~~~S~~~eSF~~gLLeyPqYTRP~~~~g~~VP~VLlSGnH~~I~~WR~~~sl~~T~~~RPDL~~~~~l----~~~~~~~  236 (244)
T PRK00026        161 GNEESAEEDSFSDGLLEYPHYTRPAEFRGMKVPEVLLSGNHAKIARWRRKQSLERTKLRRPDLLEKLAL----TKEDKKL  236 (244)
T ss_pred             CCccccccccccCCCCCCCCCCChHhhCCCCCcccccCCCHHHHHHHHHHHHHHHHHHhChhHHhhccC----CHHHHHH
Confidence            999999 99999999999999999999999999999999999999999999999999999999999877    9999999


Q ss_pred             HHHHhh
Q psy3767         240 LKKINK  245 (246)
Q Consensus       240 l~~~~~  245 (246)
                      |.++++
T Consensus       237 l~~~~~  242 (244)
T PRK00026        237 LAELKK  242 (244)
T ss_pred             HHHHhc
Confidence            998864

>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase Back     alignment and domain information
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PF01746 tRNA_m1G_MT: tRNA (Guanine-1)-methyltransferase; InterPro: IPR016009 In transfer RNA many different modified nucleosides are found, especially in the anticodon region Back     alignment and domain information
>PRK00103 rRNA large subunit methyltransferase; Provisional Back     alignment and domain information
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases [] Back     alignment and domain information
>COG1576 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH Back     alignment and domain information
>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
4h3y_A276 Crystal Structure Of An Asymmetric Dimer Of A Trna 9e-74
1uaj_A274 Crystal Structure Of Trna(M1g37)methyltransferase: 9e-56
3axz_A266 Crystal Structure Of Haemophilus Influenzae Trmd In 9e-56
1p9p_A261 The Crystal Structure Of A M1g37 Trna Methyltransfe 1e-55
3ky7_A269 2.35 Angstrom Resolution Crystal Structure Of A Put 2e-47
3knu_A253 Crystal Structure Of Trna (Guanine-N1)-Methyltransf 2e-40
3ief_A233 Crystal Structure Of Trna Guanine-N1-Methyltransfer 3e-40
1oy5_A257 Crystal Structure Of Trna (M1g37) Methyltransferase 2e-35
3quv_A246 Crystal Structure Of A Trna-Guanine-N1-Methyltransf 2e-34
>pdb|4H3Y|A Chain A, Crystal Structure Of An Asymmetric Dimer Of A Trna (Guanine-(N(1)-)- Methyltransferase From Burkholderia Phymatum Bound To S-Adenosyl Homocystein In One Half-Site Length = 276 Back     alignment and structure 
Iteration: 1

 Score =  273 bits (697), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 130/250 (52%), Positives = 170/250 (68%), Gaps = 5/250 (2%)
Query: 1   MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
           MQFD++TLFP+MF A+T  GIT RA ++++Y L  WNPR+F+++NYR IDD PYGGG GM
Sbjct: 22  MQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGM 81
Query: 61  IMLGKPIEDTITAXXXXXXXX----XXXXYMSPQGKKLTHNIIIKLLKESNLILLCGRYQ 116
           +ML +P+ED I A                 MSPQG  L H+ +++   E  LILLCGRY+
Sbjct: 82  VMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYE 141
Query: 117 AIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLL 175
           AIDQR +D  +DEE+S+GDF+LSGGELPAM LIDA+VR LP VLN+  + +QDSF++GLL
Sbjct: 142 AIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSFVDGLL 201
Query: 176 DCSYYTKPRIYLNMEVPIVLLSGNHXXXXXXXXXXXXXITNKKRPDLIIKARKNKFLTCT 235
           DC +YT+P  Y  + VP VLL G+H              T  KRPDLI++ARKNK L+  
Sbjct: 202 DCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRA 261
Query: 236 DEEFLKKINK 245
           DE +L  + K
Sbjct: 262 DEAWLASLAK 271
>pdb|1UAJ|A Chain A, Crystal Structure Of Trna(M1g37)methyltransferase: Insight Into Trna Recognition Length = 274 Back     alignment and structure
>pdb|3AXZ|A Chain A, Crystal Structure Of Haemophilus Influenzae Trmd In Complex With Adenosine Length = 266 Back     alignment and structure
>pdb|1P9P|A Chain A, The Crystal Structure Of A M1g37 Trna Methyltransferase, Trmd Length = 261 Back     alignment and structure
>pdb|3KY7|A Chain A, 2.35 Angstrom Resolution Crystal Structure Of A Putative Trna (Guanine-7-)-Methyltransferase (Trmd) From Staphylococcus Aureus Subsp. Aureus Mrsa252 Length = 269 Back     alignment and structure
>pdb|3KNU|A Chain A, Crystal Structure Of Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Length = 253 Back     alignment and structure
>pdb|3IEF|A Chain A, Crystal Structure Of Trna Guanine-N1-Methyltransferase From Bartonella Henselae Using Mpcs. Length = 233 Back     alignment and structure
>pdb|1OY5|A Chain A, Crystal Structure Of Trna (M1g37) Methyltransferase From Aquifex Aeolicus Length = 257 Back     alignment and structure
>pdb|3QUV|A Chain A, Crystal Structure Of A Trna-Guanine-N1-Methyltransferase From Mycobacterium Abscessus Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
1ual_A274 TRNA (guanine-N(1)-)-methyltransferase; spout clas 1e-134
3ky7_A269 TRNA (guanine-N(1)-)-methyltransferase; putative t 1e-130
3ief_A233 TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg 1e-126
1oy5_A257 TRNA (guanine-N(1)-)-methyltransferase; structural 1e-124
3knu_A253 TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg 1e-124
3quv_A246 TRNA (guanine-N(1)-)-methyltransferase; sssgcid, s 1e-117
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37)methyltrans tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 3axz_A* 1p9p_A* Length = 274 Back     alignment and structure
 Score =  376 bits (969), Expect = e-134
 Identities = 110/247 (44%), Positives = 163/247 (65%), Gaps = 5/247 (2%)

Query: 1   MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
           M   VI+LFPEMF AIT+ G+T RA +     +  WNPR+F+ + ++ +DD PYGGG GM
Sbjct: 21  MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGM 80

Query: 61  IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
           +M+ +P+ D I   K    +  K+IY+SPQG+KL    + +L +   LIL+CGRY+ ID+
Sbjct: 81  LMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDE 140

Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLN-MQDSFINGLLDCSY 179
           R +   IDEE S+GD++L+GGELPAM LIDA+ R +P VL  + +  +DSF +GLLDC +
Sbjct: 141 RLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPH 200

Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF 239
           YT+P +   + VP VL+SG+H++I+KW+ K SL+ T  +RP+L+        LT    + 
Sbjct: 201 YTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLA----LTDEQRKL 256

Query: 240 LKKINKK 246
           LK+   +
Sbjct: 257 LKEAQAE 263
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} Length = 269 Back     alignment and structure
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} Length = 233 Back     alignment and structure
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, B structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4 Length = 257 Back     alignment and structure
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, tRNA methyl transferase; 2.25A {Anaplasma phagocytophilum} Length = 253 Back     alignment and structure
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural genomics center for infectious D ssgcid, tRNA methyltransferase; 1.70A {Mycobacterium abscessus} Length = 246 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
1ual_A274 TRNA (guanine-N(1)-)-methyltransferase; spout clas 100.0
4h3z_A276 TRNA (guanine-N(1)-)-methyltransferase; structural 100.0
3ky7_A269 TRNA (guanine-N(1)-)-methyltransferase; putative t 100.0
3ief_A233 TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg 100.0
1oy5_A257 TRNA (guanine-N(1)-)-methyltransferase; structural 100.0
3knu_A253 TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg 100.0
3quv_A246 TRNA (guanine-N(1)-)-methyltransferase; sssgcid, s 100.0
1o6d_A163 Hypothetical UPF0247 protein TM0844; structural ge 95.84
1to0_A167 Hypothetical UPF0247 protein YYDA; structural geno 94.39
3oii_A253 Essential for mitotic growth 1; EMG1, scnep1, spou 94.0
4fak_A163 Ribosomal RNA large subunit methyltransferase H; a 93.32
3aia_A211 UPF0217 protein MJ1640; DUF358, rRNA methyltransfe 92.37
1ns5_A155 Hypothetical protein YBEA; structural genomics, PS 90.99
2qmm_A197 UPF0217 protein AF_1056; alpha/beta knot, SAM, str 88.61
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37)methyltrans tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 3axz_A* 1p9p_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-122  Score=832.53  Aligned_cols=241  Identities=45%  Similarity=0.837  Sum_probs=224.6

Q ss_pred             CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767           1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK   80 (246)
Q Consensus         1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~   80 (246)
                      |+|+|||||||||++++++||+|||+++|+|+|++|||||||.|||++||||||||||||||+|||+++||++++.....
T Consensus        21 Mr~dvlTLFPemf~~~l~~sI~grA~~~gl~~i~~~n~Rdfa~dkHr~VDD~PyGGGaGMVm~~ePl~~Al~~~~~~~~~  100 (274)
T 1ual_A           21 MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGE  100 (274)
T ss_dssp             EEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHHHCT
T ss_pred             eEEEEEEEChhhhhhhhhccHHHHHHHCCCeEEEEEcchhccCCCCCCCCCCCCCCCCCcEecHHHHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999754221


Q ss_pred             CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767          81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL  160 (246)
Q Consensus        81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL  160 (246)
                      .++||||||||++|||++|++||++++|||||||||||||||++.++|||||||||||||||+|||||||||+|||||||
T Consensus       101 ~~~vI~lsP~G~~f~Q~~a~eLa~~~~lillCGrYEGiDeRv~e~~vdeEiSIGDyVLtGGElaAmvliDAv~RLlPGVL  180 (274)
T 1ual_A          101 GAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL  180 (274)
T ss_dssp             TCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTTCC
T ss_pred             CCeEEEECCCCCcCCHHHHHHHHCCCCEEEEeccccchHHHHHhhcCcEEEecccEEecCccHHHHHHHHHHHHcCCCCc
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHHHH
Q psy3767         161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF  239 (246)
Q Consensus       161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~~~  239 (246)
                      ||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+.+|||||++..+    |++|+++
T Consensus       181 Gn~~S~~~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~~I~~WR~~qsl~rT~~rRPDLl~~~~l----~~~~~~~  256 (274)
T 1ual_A          181 GKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLAL----TDEQRKL  256 (274)
T ss_dssp             ---------CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCC----CHHHHHH
T ss_pred             CChhhcccccccCCCCCCCCCCCccccCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHhChhHHhhcCC----CHHHHHH
Confidence            999999 99999999999999999999999999999999999999999999999999999999998877    9999999


Q ss_pred             HHHHhh
Q psy3767         240 LKKINK  245 (246)
Q Consensus       240 l~~~~~  245 (246)
                      |+++++
T Consensus       257 L~~~~~  262 (274)
T 1ual_A          257 LKEAQA  262 (274)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A* Back     alignment and structure
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0 Back     alignment and structure
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} Back     alignment and structure
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, B structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4 Back     alignment and structure
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, tRNA methyl transferase; 2.25A {Anaplasma phagocytophilum} PDB: 4ig6_A* Back     alignment and structure
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural genomics center for infectious D ssgcid, tRNA methyltransferase; 1.70A {Mycobacterium abscessus} Back     alignment and structure
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 Back     alignment and structure
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3 Back     alignment and structure
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A* Back     alignment and structure
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A Back     alignment and structure
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3 Back     alignment and structure
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 246
d1uala_252 c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD 6e-89
d1oy5a_232 c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD 8e-78
d2v3ka1227 c.116.1.6 (A:25-251) Essential for mitotic growth 1e-18
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: tRNA(m1G37)-methyltransferase TrmD
domain: tRNA(m1G37)-methyltransferase TrmD
species: Haemophilus influenzae [TaxId: 727]

 Score =  261 bits (668), Expect = 6e-89
 Identities = 110/247 (44%), Positives = 163/247 (65%), Gaps = 5/247 (2%)

Query: 1   MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGM 60
           M   VI+LFPEMF AIT+ G+T RA +     +  WNPR+F+ + ++ +DD PYGGG GM
Sbjct: 3   MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGM 62

Query: 61  IMLGKPIEDTITAIKKNIKKIPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQ 120
           +M+ +P+ D I   K    +  K+IY+SPQG+KL    + +L +   LIL+CGRY+ ID+
Sbjct: 63  LMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDE 122

Query: 121 RFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVLNNKLNMQ-DSFINGLLDCSY 179
           R +   IDEE S+GD++L+GGELPAM LIDA+ R +P VL  + + + DSF +GLLDC +
Sbjct: 123 RLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPH 182

Query: 180 YTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF 239
           YT+P +   + VP VL+SG+H++I+KW+ K SL+ T  +RP+L+        LT    + 
Sbjct: 183 YTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLA----LTDEQRKL 238

Query: 240 LKKINKK 246
           LK+   +
Sbjct: 239 LKEAQAE 245
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]} Length = 232 Back     information, alignment and structure
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 227 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
d1uala_252 tRNA(m1G37)-methyltransferase TrmD {Haemophilus in 100.0
d1oy5a_232 tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolic 100.0
d2v3ka1227 Essential for mitotic growth 1, EMG1 {Saccharomyce 99.39
d1o6da_147 Hypothetical protein TM0844 {Thermotoga maritima [ 97.06
d1vh0a_157 Hypothetical protein SAV0024/SA0023 {Staphylococcu 95.76
d1ns5a_153 Hypothetical protein YbeA {Escherichia coli [TaxId 93.84
d1to0a_157 Hypothetical protein YydA {Bacillus subtilis [TaxI 93.11
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: tRNA(m1G37)-methyltransferase TrmD
domain: tRNA(m1G37)-methyltransferase TrmD
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.3e-120  Score=814.79  Aligned_cols=241  Identities=45%  Similarity=0.837  Sum_probs=226.7

Q ss_pred             CEEEEEecCccccHHHHhhhHHHHHHHcCCeEEEEEccCCCCCCCCcccCCCCCCCCCCcccccHHHHHHHHHHHhhcCC
Q psy3767           1 MQFDVITLFPEMFSAITQSGITRRAFEKKQYSLNLWNPRNFSSNNYRKIDDYPYGGGVGMIMLGKPIEDTITAIKKNIKK   80 (246)
Q Consensus         1 M~~~viTlFPe~f~~~~~~si~~rA~~~g~~~i~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~~~   80 (246)
                      |+|+|||||||||++++++||+|||+++|+|++++||||||+.|||++|||+||||||||||||||+++|+++++....+
T Consensus         3 M~i~IiTLFPe~f~~~l~~sIigrA~~~~lv~i~~~nlRdfs~dkhr~VDD~PyGGGpGMVmk~ePl~~ai~~~~~~~~~   82 (252)
T d1uala_           3 MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGE   82 (252)
T ss_dssp             EEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHHHCT
T ss_pred             cEEEEEEEChhhhhhhhhccHHHHHHHCCceEEEEEChhhhCCCCCcCcCCCcCCCCCcceeechhHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999765344


Q ss_pred             CCcEEEeCCCCCccCHHHHHHHhcCCCeEEEccCcchhhHhhhccccceeeeecceeecCCchhHHHHHHHHHHhccccc
Q psy3767          81 IPKIIYMSPQGKKLTHNIIIKLLKESNLILLCGRYQAIDQRFLDNFIDEEISVGDFILSGGELPAMMLIDAIVRLLPKVL  160 (246)
Q Consensus        81 ~~~vI~lsP~G~~~~Q~~a~~La~~~~lvliCGrYEGiDeRv~~~~vdeeiSIGDyVLsGGElaAmvliDav~RliPGvL  160 (246)
                      +++||||||||++|||++|++||++++|+|||||||||||||+++++|+|||||||||||||+|||||||||+||+||||
T Consensus        83 ~~~vI~lSP~Gk~f~Q~~a~~ls~~~~liliCGrYEGiDeRv~~~~~d~eiSiGDyVLsGGEl~A~v~idai~Rl~PGvl  162 (252)
T d1uala_          83 GAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL  162 (252)
T ss_dssp             TCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTTCC
T ss_pred             CCcEEEECCCCCchhhHHHHHhhccccEEEEeccchhHhHHHHHhhcceeeecccEEEeccchHHhhhHHHHHHHhcCcc
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCc-cccccCCCCCCCCCCCCCccCCCCCCccccCCchHHHHHHHHHHHHHHHHhhCchhHHhhhcCCCCCHHHHHH
Q psy3767         161 NNKLNM-QDSFINGLLDCSYYTKPRIYLNMEVPIVLLSGNHKKIKKWKRKNSLKITNKKRPDLIIKARKNKFLTCTDEEF  239 (246)
Q Consensus       161 g~~~S~-~eSF~~gLLe~P~YTRP~~~~G~~VPeVLlSGnH~kI~~WR~~~sl~~T~~~RPDLl~~~~l~~~l~~~~~~~  239 (246)
                      ||++|+ +|||++|||||||||||++|+|++||||||||||++|++||++||+++|+++|||||+++.+    +++++++
T Consensus       163 g~~~S~~~eSF~~~lLe~P~YTrP~~~~g~~VPeVLlSG~H~~I~~Wr~~~sl~~T~~~RPDL~~~~~l----~~~~~~~  238 (252)
T d1uala_         163 GKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLAL----TDEQRKL  238 (252)
T ss_dssp             ---------CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCC----CHHHHHH
T ss_pred             CCccccccccccCCCcCCccccCccccCCCCCCcchhCCChHHHHHHHHHHHHHHHHHHChHHHHhcCC----CHHHHHH
Confidence            999999 99999999999999999999999999999999999999999999999999999999999988    9999999


Q ss_pred             HHHHhh
Q psy3767         240 LKKINK  245 (246)
Q Consensus       240 l~~~~~  245 (246)
                      |++++.
T Consensus       239 l~~~~~  244 (252)
T d1uala_         239 LKEAQA  244 (252)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure