Psyllid ID: psy3781

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPST
Secondary Structure (PSIPRED)
cccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHccccccccccccccccccccccccccccEEccccccccccHHHHccccccEEcccccccccccccHHHHccccccEEcccccccccccHHHHccccccEEEcccccccccHHHHHHccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccEEcccccccccccHHHHHHHcccEEEcccccccEccHHHHHcccccEEEcccccccEcHHHcccccccEEEccccccccccHHHHHHccccEEEccccccccccccHHHHcHHcccEEEccccccccccHHHHccccccEEEccccccccccHHHHHccccEEEEccccccccc
Coil and Loop (DISEMBL)
MIAKEAQVEQADLSynrlhvvnsklfditsireldlshnliqnlppdllnLRHLVYMNlennkletididfnfghlrelnlssnkfqqipkcifhldnleililnnndieeinqpekLVKMQKLTVLdlsnnnirkipYELGLAQQLHHLNlvgncfkyprqdilqkgtPFLLSYlrdklpst
Flexible Loop (DISEMBL)
MIAKEAQVEqadlsynrlhvVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLsylrdklpst
Low Complexity Region (SEG)
MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHldnleililnnndieeinQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPST
Disordered region (IsUnstruct)
************LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR******
Disordered Region (DISOPRED)
MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL***
Disordered Region (DISEMBL)
*********QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPST
Disordered Region (DISPRO)
MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9H9A6	602	Leucine-rich repeat-conta	yes	N/A	0.950	0.289	0.338	4e-21
Q7SXW3	601	Leucine-rich repeat-conta	yes	N/A	0.950	0.289	0.327	7e-21
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	N/A	0.978	0.295	0.329	8e-21
Q5RFE9	602	Leucine-rich repeat-conta	yes	N/A	0.950	0.289	0.327	4e-20
Q5M8G4	605	Leucine-rich repeat-conta	yes	N/A	0.950	0.287	0.327	4e-20
Q4R3P6	602	Leucine-rich repeat-conta	N/A	N/A	0.950	0.289	0.327	4e-20
Q5ZLN0	603	Leucine-rich repeat-conta	yes	N/A	0.950	0.288	0.327	5e-20
Q9CRC8	602	Leucine-rich repeat-conta	yes	N/A	0.978	0.297	0.324	5e-20
Q8BGR2	859	Leucine-rich repeat-conta	no	N/A	0.786	0.167	0.374	4e-16
Q5U308	858	Leucine-rich repeat-conta	no	N/A	0.786	0.167	0.367	6e-16

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 108/177 (61%), Gaps = 3/177 (1%)

Query: 8   VEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET 66
           V   + S N+L  +  ++ ++   + ++DLS N +  +  +L  L+ L +++L NN L +
Sbjct: 427 VTSINFSKNQLCEIPKRMVELKEMVSDVDLSFNKLSFISLELCVLQKLTFLDLRNNFLNS 486

Query: 67  IDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
           +  +  +   L+ +NLS N+F+ +P+ ++ +  LE ++++NN +  ++ P+K+  M+ LT
Sbjct: 487 LPEEMESLVRLQTINLSFNRFKMLPEVLYRIFTLETILISNNQVGSVD-PQKMKMMENLT 545

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
            LDL NN++ +IP ELG    L  L L GN F+ PR  IL KGT  +L YLRD++P+
Sbjct: 546 TLDLQNNDLLQIPPELGNCVNLRTLLLDGNPFRVPRAAILMKGTAAILEYLRDRIPT 602

Homo sapiens (taxid: 9606)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score =  100 bits (248), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 107/177 (60%), Gaps = 3/177 (1%)

Query: 8   VEQADLSYNRLHVVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET 66
           V   + S N+L  V  ++ D+  S+ +++L  N +  +P D  +L+ L++++L NN L +
Sbjct: 426 VANVNFSKNQLTAVPHRIVDLKDSLADINLGFNKLTTIPADFCHLKQLMHIDLRNNLLIS 485

Query: 67  IDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
           + ++      LR + LS N+F+  P+ ++ + +LE +++++N +  I+   ++  + +L+
Sbjct: 486 LPMELEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDA-VQMKTLSRLS 544

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
            LDLSNN+I ++P ELG    L  L L GN F+ PR  IL KGT  +L YLR ++P+
Sbjct: 545 TLDLSNNDIMQVPPELGNCTSLRALMLDGNPFRNPRAAILIKGTDAVLEYLRSRIPT 601

Danio rerio (taxid: 7955)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 108/182 (59%), Gaps = 3/182 (1%)

Query: 3   AKEAQVEQADLSYNRLHVVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
           A  + +   + S N+L  V +++ ++  S+ +++L  N I ++  +L  L  L ++++ N
Sbjct: 425 AASSPITTVNFSKNQLTEVPARIVEMKDSVYDVNLGFNKISSISLNLCMLLKLTHLDMRN 484

Query: 62  NKLETIDIDFN-FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVK 120
           N L ++  +      L+ + LS N+F+  P  ++ + NLE +++++N I  I+ P +L K
Sbjct: 485 NALASLPPEMEALTRLQSIILSFNRFKHFPDVLYTIPNLETILISSNQIGSID-PIQLKK 543

Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL 180
           M KL+ LDL NN++ +IP  LG  + L  L+L GN F+ PR  IL KGT  +L YLR ++
Sbjct: 544 MTKLSTLDLQNNDLLQIPPALGNCESLRALHLEGNPFRNPRATILAKGTVAILEYLRSRI 603

Query: 181 PS 182
           P+
Sbjct: 604 PT 605

Xenopus laevis (taxid: 8355)

>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 108/177 (61%), Gaps = 3/177 (1%)

Query: 8   VEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET 66
           +   + S N+L  +  ++ ++   + +++LS N +  +  +L  L+ L +++L NN L +
Sbjct: 427 ITSINFSKNQLCEIPKRMVELKEMVSDVNLSFNKLSFISLELCVLQKLTFLDLRNNFLNS 486

Query: 67  IDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
           +  +  +   L+ +NLS N+F+ +P+ ++ +  LE ++++NN +  ++ P+K+  M+ LT
Sbjct: 487 LPEEVESLVRLQTINLSFNRFKMLPEVLYRIFTLETILISNNQVGSVD-PQKMKMMENLT 545

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
            LDL NN++ +IP ELG    L  L L GN F+ PR  IL KGT  +L YLRD++P+
Sbjct: 546 TLDLQNNDLLQIPPELGNCVNLRTLLLDGNPFRVPRAAILMKGTAGILEYLRDRIPT 602

Pongo abelii (taxid: 9601)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 106/177 (59%), Gaps = 3/177 (1%)

Query: 8   VEQADLSYNRLHVVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET 66
           +   + S N+L  V +++ ++  S+ +++L  N I ++  +L  L  L ++++ NN L +
Sbjct: 430 ITTVNFSKNQLTEVPARIVEMKDSVCDVNLGFNKISSISLNLCMLLKLTHIDMRNNVLTS 489

Query: 67  IDIDFN-FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
           +  +      L+ + LS N+F+  P  ++ +  LE +++++N I  I+ P +L+KM KL+
Sbjct: 490 LPSEMEAMTRLQSVILSFNRFKHFPDVLYRIPTLETILISSNQIGSID-PTQLIKMTKLS 548

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
            LDL NN++ +IP  LG  + L  L+L GN F+ PR  IL KGT  +L YLR ++P+
Sbjct: 549 TLDLQNNDLLQIPPALGNCESLRALHLEGNPFRNPRAAILAKGTVAVLEYLRSRIPT 605

Xenopus tropicalis (taxid: 8364)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 108/177 (61%), Gaps = 3/177 (1%)

Query: 8   VEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET 66
           +   + S N+L  +  ++ ++   + +++LS N +  +  +L  L+ L +++L NN L +
Sbjct: 427 ITSINFSKNQLCEIPKRMVELKEMVSDVNLSFNKLSFISLELCMLQKLTFLDLRNNFLNS 486

Query: 67  IDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
           +  +  +   L+ +NLS N+F+ +P+ ++ +  LE ++++NN +  ++ P+K+  M+ LT
Sbjct: 487 LPEEMESLVRLQTINLSFNRFKMLPEVLYRIFTLETILISNNQVGSVD-PQKMKMMENLT 545

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
            LDL NN++ +IP ELG    L  L L GN F+ PR  IL KGT  +L YLRD++P+
Sbjct: 546 TLDLQNNDLLQIPPELGNCVNLRTLLLDGNPFRVPRAAILIKGTAAILEYLRDRIPT 602

Macaca fascicularis (taxid: 9541)

>sp|Q5ZLN0|LRC40_CHICK Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 104/177 (58%), Gaps = 3/177 (1%)

Query: 8   VEQADLSYNRLHVVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET 66
           V   + S N+L  +  ++ ++  S+ +++   N I ++  +L  L  L ++++ NN L +
Sbjct: 428 VTSVNFSKNQLTAIPPRIVELKDSVCDVNFGFNKISSVSLELCTLHKLTHLDIRNNVLTS 487

Query: 67  IDIDFN-FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
           +  +      L+ +NLS N+F+  P  ++ +  LE ++L+NN +  I+ P +L KM++L 
Sbjct: 488 LPEEMEALTRLQVINLSFNRFKVFPSVLYRMLALETILLSNNQVGSID-PLQLKKMEQLG 546

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
            LDL NN++ ++P ELG  + L  L L GN F+ PR  IL KGT  +L YLR ++P+
Sbjct: 547 TLDLQNNDLLQVPPELGNCETLRTLLLEGNPFRTPRAAILAKGTAAVLEYLRSRIPT 603

Gallus gallus (taxid: 9031)

>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 108/182 (59%), Gaps = 3/182 (1%)

Query: 3   AKEAQVEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
            K   +   + S N+L  +  ++ ++   + +++LS N +  +  +L  L+ L +++L N
Sbjct: 422 TKTTLITSINFSKNQLCEIPQRIVELKEMVLDINLSFNKLSFISHELCLLQKLTFLDLRN 481

Query: 62  NKLETIDIDFN-FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVK 120
           N L ++  + +    L+ +NLS N+F+  P+ ++ +  LE ++++NN +  ++ P+K+  
Sbjct: 482 NFLSSLPEEMSSLTKLQTINLSFNRFKVFPEVLYRISTLEAVLISNNQVGSVD-PQKMKL 540

Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL 180
           M+ L  LDL NN++ +IP ELG   QL  L L GN F+ PR  IL KGT  +L YLRD++
Sbjct: 541 MENLNTLDLQNNDLLQIPPELGNCVQLRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDRI 600

Query: 181 PS 182
           P+
Sbjct: 601 PA 602

Mus musculus (taxid: 10090)

>sp|Q8BGR2|LRC8D_MOUSE Leucine-rich repeat-containing protein 8D OS=Mus musculus GN=Lrrc8d PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 11/155 (7%)

Query: 16  NRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGH 75
            +L V+NS L  + ++ EL+L +  ++ +P  + +L +L  ++L++N + TI+   +F H
Sbjct: 624 TKLLVLNS-LKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQH 682

Query: 76  LRELN---LSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
           L+ L    L  NK   IP  I H+ NLE L  +NN +E +  P  +  +QKL  LD+S N
Sbjct: 683 LKRLTCLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESL--PTAVFSLQKLRCLDVSYN 740

Query: 133 NIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
           NI  IP E+GL Q L HL++ GN     + DIL K
Sbjct: 741 NISTIPIEIGLLQNLQHLHITGN-----KVDILPK 770

Mus musculus (taxid: 10090)

>sp|Q5U308|LRC8D_RAT Leucine-rich repeat-containing protein 8D OS=Rattus norvegicus GN=Lrrc8d PE=2 SV=1

 Score = 83.6 bits (205), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 90/155 (58%), Gaps = 11/155 (7%)

Query: 16  NRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGH 75
            +L V+NS L  + ++ EL+L +  ++ +P  + +L +L  ++L++N + TI+   +F H
Sbjct: 623 TKLLVLNS-LKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNSIRTIEEIISFQH 681

Query: 76  LRELN---LSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
           L+ L    L  NK   IP  I H+ NLE L  +NN +E +  P  +  +QKL  LD+S N
Sbjct: 682 LKRLTCLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESL--PVAVFSLQKLRCLDVSYN 739

Query: 133 NIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
           NI  IP E+GL Q L HL++ GN     + D+L K
Sbjct: 740 NISTIPIEIGLLQNLQHLHITGN-----KVDVLPK 769

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
156551095	591	PREDICTED: leucine-rich repeat-containin	0.978	0.302	0.445	4e-31
357618946	601	putative mitotic protein phosphatase 1 r	0.994	0.302	0.416	7e-31
158286480	626	AGAP006993-PA [Anopheles gambiae str. PE	0.967	0.282	0.413	1e-28
195109404	694	GI24424 [Drosophila mojavensis] gi|19391	0.983	0.259	0.393	4e-27
350425451	602	PREDICTED: leucine-rich repeat-containin	0.972	0.295	0.403	9e-27
170029739	612	leucine-rich repeat-containing protein 4	0.978	0.292	0.373	1e-26
196008717	608	hypothetical protein TRIADDRAFT_27850 [T	0.994	0.299	0.389	1e-26
157135396	608	mitotic protein phosphatase 1 regulator,	0.983	0.296	0.382	2e-26
383849806	604	PREDICTED: leucine-rich repeat-containin	0.983	0.298	0.404	3e-26
380014404	602	PREDICTED: leucine-rich repeat-containin	0.961	0.292	0.420	4e-26

>gi|156551095|ref|XP_001603101.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Nasonia vitripennis]

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 117/182 (64%), Gaps = 3/182 (1%)

Query: 3   AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLEN 61
           AKEA+V   DLS N+L V+   +  +TS  +L LS+NL+  LP  L  +L  L Y++L  
Sbjct: 409 AKEAEVTCVDLSRNKLQVLTDAMSKVTSTTDLKLSYNLLAELPEWLGESLERLRYLDLSK 468

Query: 62  NKLETIDIDFN-FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVK 120
           N L ++    +    L E+N+S NKF+++P+CI+ +  LEILI N+N +  IN P  L  
Sbjct: 469 NLLTSLPASLSQLRLLVEINISFNKFEEMPECIYEIAGLEILIANDNKMSCINVP-ALSN 527

Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL 180
           +++L  LDLSNNNI  +P ELG  + L  L+L GNCFK PRQ  L KGT  +L+YLR+++
Sbjct: 528 LKRLAHLDLSNNNIGYVPPELGNLKNLRMLSLSGNCFKQPRQATLMKGTEEILAYLRNRI 587

Query: 181 PS 182
           P+
Sbjct: 588 PT 589

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618946|gb|EHJ71730.1| putative mitotic protein phosphatase 1 regulator [Danaus plexippus]

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 121/185 (65%), Gaps = 3/185 (1%)

Query: 1   MIAKEAQVEQADLSYNRLHVVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNL 59
           + A +A+V   DLS N+L  + +    +  ++ +L LS N I+ +PP++   +HL Y++L
Sbjct: 417 VAAAQAEVHVIDLSRNKLTGLPAGFHLVRDTLTQLLLSSNSIEVVPPEISACKHLQYIDL 476

Query: 60  ENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEIN-QPEK 117
             N L  + ++  +  +LREL +S+N+F +IP+C++ L+NLEIL+   N I EIN   + 
Sbjct: 477 GKNCLTDLPMEMSDLKNLRELVISNNRFTKIPRCVYDLENLEILLAAENQITEINVSSDA 536

Query: 118 LVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
           L K++KL VLDL+NN+I  +P ELG    L  L L+GNCF+ PR  +L KGT  +LSYLR
Sbjct: 537 LAKLKKLAVLDLTNNSIITVPPELGNFTHLRSLELMGNCFRQPRHAVLTKGTASILSYLR 596

Query: 178 DKLPS 182
           D++P+
Sbjct: 597 DRIPT 601

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158286480|ref|XP_308777.4| AGAP006993-PA [Anopheles gambiae str. PEST] gi|157020488|gb|EAA04662.4| AGAP006993-PA [Anopheles gambiae str. PEST]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 115/184 (62%), Gaps = 7/184 (3%)

Query: 3   AKEAQVEQADLSYNRLHVVNSKLFDITSI-RELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
           A EA V   D+S N+L  V S +  ++S+  EL++S NL+Q +P        + Y+NL N
Sbjct: 444 ALEACVYNVDISKNKLTAVPSGITHLSSLLTELNVSFNLLQTVPAFFSQFDKISYLNLSN 503

Query: 62  NKLETIDIDFNFG---HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEK- 117
           N++   D+    G    LRELN+ SN+ ++IP C++ L  LEIL+ + N IEEI+  E  
Sbjct: 504 NQM--TDLPEVVGLLVTLRELNVISNQLKRIPDCVYELRGLEILLASGNQIEEIDATESG 561

Query: 118 LVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
           L  +++L  LDL+NNNI+ +P  LG  + +  L L+GN F+ PR  IL+KGT  ++SYLR
Sbjct: 562 LGALKRLATLDLANNNIKHVPPVLGTLKNITTLELIGNSFRQPRHQILEKGTESIMSYLR 621

Query: 178 DKLP 181
           D++P
Sbjct: 622 DRIP 625

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109404|ref|XP_001999277.1| GI24424 [Drosophila mojavensis] gi|193915871|gb|EDW14738.1| GI24424 [Drosophila mojavensis]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 111/183 (60%), Gaps = 3/183 (1%)

Query: 2   IAKEAQVEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLE 60
           +A E +V   D + N L  +   L  ++  + EL LSHN+I N+PP +     + ++NL 
Sbjct: 513 LASEEKVHVVDFARNHLSTLPKGLQHMSDLVTELVLSHNVINNVPPFISQFTRITFLNLS 572

Query: 61  NNKLETIDIDFNF-GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV 119
           NN ++ +  +F     LRELN+++N+F+ +P  ++ L  LEILI ++N I+ IN    L 
Sbjct: 573 NNLIKDLPPEFGLLNTLRELNIANNRFEALPNALYELQGLEILIASDNQIKAINV-AGLQ 631

Query: 120 KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDK 179
            + +L+ LDL NNNI  +P  LG    + HL LVGN F+ PR  IL KGT  ++SYLRD+
Sbjct: 632 NLPRLSTLDLRNNNIEYVPPTLGNLTNITHLELVGNPFRQPRHQILMKGTDSIMSYLRDR 691

Query: 180 LPS 182
           +P+
Sbjct: 692 IPT 694

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425451|ref|XP_003494125.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Bombus impatiens]

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 120/181 (66%), Gaps = 3/181 (1%)

Query: 3   AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLEN 61
           A +A V   DLS N+L ++  KL  I  I +L L+ N + ++P  +    ++L  ++L  
Sbjct: 422 ACKADVGTVDLSRNKLSILPDKLCIIERIADLKLTSNQLTHIPEWIGEKYKYLQILDLSR 481

Query: 62  NKLETIDIDFNF-GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVK 120
           N L+++ I+     +L+ELN+S N++++IP+ ++ +++LEILI N+N I +I+ P    K
Sbjct: 482 NLLQSLPINLGLLKYLQELNISFNRYKEIPESVYAINSLEILIANDNLITDIDVP-SFQK 540

Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL 180
           +QKL +L+L+NNNI  +P ELG  + L +L+L GNCFK PRQ IL K T  +L+YLR+++
Sbjct: 541 LQKLAILNLANNNIGFVPPELGTLKNLRNLSLSGNCFKQPRQAILAKSTEEILAYLRNRI 600

Query: 181 P 181
           P
Sbjct: 601 P 601

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029739|ref|XP_001842749.1| leucine-rich repeat-containing protein 40 [Culex quinquefasciatus] gi|167864068|gb|EDS27451.1| leucine-rich repeat-containing protein 40 [Culex quinquefasciatus]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 114/182 (62%), Gaps = 3/182 (1%)

Query: 3   AKEAQVEQADLSYNRLHVVNSKLFDITSI-RELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
           A EA V   D+S N+L  + + L  + SI  EL++S N ++ +P        + Y+N+ N
Sbjct: 430 AMEASVYNIDISKNKLMEIPAGLTHLASIMTELNVSFNALKTIPMFFSQFERISYLNVSN 489

Query: 62  NKLETI-DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPE-KLV 119
           N+L  + ++      LRELN+++N+ +QIP C++ L  LEIL+   N IEE++  E  L 
Sbjct: 490 NQLTDLPEVVGLLVTLRELNVANNQLKQIPPCVYELKGLEILLARGNKIEELDASEHGLG 549

Query: 120 KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDK 179
            + +L  LD++NNNI+++P  LG+ + +  L ++GN F+ PR  IL+KGT  +++YLRD+
Sbjct: 550 ALPRLATLDVANNNIKQVPPILGMLKNITTLEIIGNAFRQPRHQILEKGTESIMAYLRDR 609

Query: 180 LP 181
           +P
Sbjct: 610 IP 611

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|196008717|ref|XP_002114224.1| hypothetical protein TRIADDRAFT_27850 [Trichoplax adhaerens] gi|190583243|gb|EDV23314.1| hypothetical protein TRIADDRAFT_27850 [Trichoplax adhaerens]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 3/185 (1%)

Query: 1   MIAKEAQVEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNL 59
           ++A   Q+   D   N L  V   L + +S I EL LS N +  LP  + N   L Y++L
Sbjct: 425 VVAGSDQIRVVDFRKNVLTTVPEPLIEFSSRIEELYLSSNKLSQLPSSMANFTKLTYLDL 484

Query: 60  ENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKL 118
            NN+L  + I+  +   LRE+ LS+N+F  IP  I+ L +LE+L+  +N IE I+    L
Sbjct: 485 GNNQLGNLPIEMESMTKLREIILSNNRFAAIPSVIYTLSSLEVLLATDNKIESID-VSGL 543

Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
            ++ +L+VLDL NN+I+++P ELG  + L  L L GN F+ PR  IL KGT  ++ YLR 
Sbjct: 544 KQLSELSVLDLQNNDIKEVPPELGTLKALKSLQLGGNLFRIPRAAILSKGTFAVMEYLRG 603

Query: 179 KLPST 183
           ++P++
Sbjct: 604 RIPTS 608

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|157135396|ref|XP_001656638.1| mitotic protein phosphatase 1 regulator, putative [Aedes aegypti] gi|108881267|gb|EAT45492.1| AAEL003228-PA [Aedes aegypti]

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 114/183 (62%), Gaps = 3/183 (1%)

Query: 3   AKEAQVEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
           A EA V   D+S N+L  V S +  +   + EL++S NL++ +P        + Y+N+ N
Sbjct: 426 AAEASVYNVDISKNKLGEVPSGITHLADQLTELNISFNLLKTIPMFFSRFERISYLNISN 485

Query: 62  NKLETI-DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEK-LV 119
           N L  + ++      LRELN+++N+ ++IP  ++ L  LEIL+  +N IEEI+  E  L 
Sbjct: 486 NLLADLPEVVGLLVTLRELNVANNQLKRIPPSVYELKGLEILLARDNKIEEIDATESGLA 545

Query: 120 KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDK 179
            + +L  LDL+NNNI+++P  LGL + +  L L+GN F+ PR  IL+KGT  +++YLRD+
Sbjct: 546 ALPRLATLDLANNNIKQVPPVLGLLKNITTLELIGNGFRQPRHQILEKGTESIMAYLRDR 605

Query: 180 LPS 182
           +P+
Sbjct: 606 IPT 608

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849806|ref|XP_003700527.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Megachile rotundata]

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 116/183 (63%), Gaps = 3/183 (1%)

Query: 3   AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLEN 61
           A +A V   DLS N+L  +  ++  I  + +L L+ N + +LP  +    +HL  ++L  
Sbjct: 422 ACKADVGTVDLSRNKLSELPDQMCVIAKVADLKLTSNELTHLPEWIGEKYKHLQALDLSR 481

Query: 62  NKLETIDIDFNF-GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVK 120
           N LE++    +   +LRELN+S N++++IP+ ++ +D+LEILI N+N I +I+ P  L K
Sbjct: 482 NFLESLPSTLSLLKYLRELNISFNRYKKIPESVYDIDSLEILIANDNSITDIDVPS-LQK 540

Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL 180
           +QKL +L+L NNNI  +P ELG  + +  L L GN FK PRQ IL K T  +L+YLRD++
Sbjct: 541 LQKLAILNLGNNNIGYVPPELGNLKNIRSLFLSGNLFKQPRQAILAKSTEEILAYLRDRI 600

Query: 181 PST 183
           P +
Sbjct: 601 PRS 603

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014404|ref|XP_003691222.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Apis florea]

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 119/183 (65%), Gaps = 7/183 (3%)

Query: 3   AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLEN 61
           A +A V   DLS N+   +  +L  IT + +L L+ N + ++P  +    ++L  ++L  
Sbjct: 422 ACKADVGTVDLSRNKFSTLPDELHIITKVADLKLTSNQLTHIPEWICEKYKYLQILDLSK 481

Query: 62  NKLETIDIDFNFG---HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKL 118
           N LE++   FN G   +L+ELN+S N++++IP+ I+ +D+LEILI N+N I  I+    L
Sbjct: 482 NCLESLP--FNIGLLKYLQELNISFNRYKEIPESIYDVDSLEILIANDNLITNIDIL-SL 538

Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
            K+QKL +L+L+NNNI  IP ELG  + L +L+L GNCFK PRQ IL K T  +L+YLR+
Sbjct: 539 QKLQKLVILNLANNNIGYIPPELGNLKNLRNLSLSGNCFKQPRQAILMKSTEEILAYLRN 598

Query: 179 KLP 181
           ++P
Sbjct: 599 RIP 601

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
FB|FBgn0028487	693	f-cup "flyers-cup" [Drosophila	0.983	0.259	0.338	3.7e-22
MGI|MGI:1914394	602	Lrrc40 "leucine rich repeat co	0.972	0.295	0.303	1.3e-18
FB|FBgn0035008	240	CG3494 [Drosophila melanogaste	0.967	0.737	0.336	5.8e-18
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.950	0.289	0.305	7.3e-18
MGI|MGI:1922368	859	Lrrc8d "leucine rich repeat co	0.781	0.166	0.331	9e-13
UNIPROTKB|Q7L1W4	858	LRRC8D "Leucine-rich repeat-co	0.781	0.166	0.331	1.1e-12
RGD|1309601	858	Lrrc8d "leucine rich repeat co	0.743	0.158	0.330	1.5e-12
MGI|MGI:1927197	582	Shoc2 "soc-2 (suppressor of cl	0.923	0.290	0.274	7.5e-12
ZFIN|ZDB-GENE-050208-523	561	shoc2 "soc-2 suppressor of cle	0.863	0.281	0.298	9e-12
UNIPROTKB|Q8AVI4	577	shoc2 "Leucine-rich repeat pro	0.923	0.292	0.274	9.5e-12

FB|FBgn0028487 f-cup "flyers-cup" [Drosophila melanogaster (taxid:7227)]

 Score = 267 (99.0 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 62/183 (33%), Positives = 97/183 (53%)

Query:     2 IAKEAQVEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLE 60
             IA++  V   D + N+L  + + L  +   + EL LS+N+I  +P  +     + ++NL 
Sbjct:   512 IARDEGVHVVDFARNQLSTLPNGLQHMKDLVTELVLSNNVIGYVPQFISQFTRISFLNLS 571

Query:    61 NNKLETIDIDFN-FGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLV 119
             NN L  +  +F     LRELN+++N+F  IP C++                       L 
Sbjct:   572 NNLLNDLPTEFGVLNTLRELNIANNRFPCIPNCVYELQGLEILIASENHIKML-NVSGLQ 630

Query:   120 KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDK 179
              M++L+ LDL NN+I  +P  LG    + HL LVGN F+ PR  IL KGT  ++SYLRD+
Sbjct:   631 NMRRLSTLDLRNNDIETVPPILGNLTNITHLELVGNPFRQPRHQILMKGTDAIMSYLRDR 690

Query:   180 LPS 182
             +P+
Sbjct:   691 IPT 693

GO:0007265 "Ras protein signal transduction" evidence=ISS

MGI|MGI:1914394 Lrrc40 "leucine rich repeat containing 40" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 55/181 (30%), Positives = 96/181 (53%)

Query:     4 KEAQVEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLENN 62
             K   +   + S N+L  +  ++ ++   + +++LS N +  +  +L  L+ L +++L NN
Sbjct:   423 KTTLITSINFSKNQLCEIPQRIVELKEMVLDINLSFNKLSFISHELCLLQKLTFLDLRNN 482

Query:    63 KLETIDIDFN-FGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKM 121
              L ++  + +    L+ +NLS N+F+  P+ ++                    P+K+  M
Sbjct:   483 FLSSLPEEMSSLTKLQTINLSFNRFKVFPEVLYRISTLEAVLISNNQVGSV-DPQKMKLM 541

Query:   122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLP 181
             + L  LDL NN++ +IP ELG   QL  L L GN F+ PR  IL KGT  +L YLRD++P
Sbjct:   542 ENLNTLDLQNNDLLQIPPELGNCVQLRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDRIP 601

Query:   182 S 182
             +
Sbjct:   602 A 602

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0035008 CG3494 [Drosophila melanogaster (taxid:7227)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 62/184 (33%), Positives = 92/184 (50%)

Query:     3 AKEAQVEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
             A++  V    L  NRL  +   L  ++  + +L L+ N I  +P ++     L  ++L N
Sbjct:    58 AQQELVNIVSLDGNRLLEMPKDLPLLSEHLTQLVLNKNQISFVPTNISQYSKLTNLSLSN 117

Query:    62 NKLETIDIDFNFGHLR---ELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEK- 117
             N L   D+    G LR    L++S N+F+Q+P+CI+                     E  
Sbjct:   118 NLL--CDLPMELGGLRLLRNLDISHNRFRQLPRCIYELERLETLSAHDNQIRAIDASESG 175

Query:   118 LVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
             L  M++L  L+L NN+I+ +P  LG  Q L  L L GN F+ PR  IL  GTP LLSYLR
Sbjct:   176 LGGMRELKRLNLGNNDIQIVPPILGKMQNLVELELWGNPFRQPRHQILSMGTPALLSYLR 235

Query:   178 DKLP 181
              ++P
Sbjct:   236 TRIP 239

GO:0006911 "phagocytosis, engulfment" evidence=IMP

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 226 (84.6 bits), Expect = 7.3e-18, P = 7.3e-18
 Identities = 54/177 (30%), Positives = 94/177 (53%)

Query:     8 VEQADLSYNRLHVVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET 66
             V   + S N+L  V  ++ D+  S+ +++L  N +  +P D  +L+ L++++L NN L +
Sbjct:   426 VANVNFSKNQLTAVPHRIVDLKDSLADINLGFNKLTTIPADFCHLKQLMHIDLRNNLLIS 485

Query:    67 IDIDFN-FGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLT 125
             + ++      LR + LS N+F+  P+ ++                     + +  + +L+
Sbjct:   486 LPMELEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDAVQ-MKTLSRLS 544

Query:   126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
              LDLSNN+I ++P ELG    L  L L GN F+ PR  IL KGT  +L YLR ++P+
Sbjct:   545 TLDLSNNDIMQVPPELGNCTSLRALMLDGNPFRNPRAAILIKGTDAVLEYLRSRIPT 601

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1922368 Lrrc8d "leucine rich repeat containing 8D" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 9.0e-13, P = 9.0e-13
 Identities = 51/154 (33%), Positives = 79/154 (51%)

Query:    17 RLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHL 76
             +L V+NS L  + ++ EL+L +  ++ +P  + +L +L  ++L++N + TI+   +F HL
Sbjct:   625 KLLVLNS-LKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHL 683

Query:    77 RELN---LSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNN 133
             + L    L  NK   IP  I H                   P  +  +QKL  LD+S NN
Sbjct:   684 KRLTCLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESL--PTAVFSLQKLRCLDVSYNN 741

Query:   134 IRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
             I  IP E+GL Q L HL++ GN     + DIL K
Sbjct:   742 ISTIPIEIGLLQNLQHLHITGN-----KVDILPK 770

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q7L1W4 LRRC8D "Leucine-rich repeat-containing protein 8D" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 51/154 (33%), Positives = 79/154 (51%)

Query:    17 RLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHL 76
             +L V+NS L  + ++ EL+L +  ++ +P  + +L +L  ++L++N + TI+   +F HL
Sbjct:   624 KLLVLNS-LKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEIISFQHL 682

Query:    77 RELN---LSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNN 133
             + L    L  NK   IP  I H                   P  +  +QKL  LD+S NN
Sbjct:   683 KRLTCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESL--PVAVFSLQKLRCLDVSYNN 740

Query:   134 IRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
             I  IP E+GL Q L HL++ GN     + DIL K
Sbjct:   741 ISMIPIEIGLLQNLQHLHITGN-----KVDILPK 769

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309601 Lrrc8d "leucine rich repeat containing 8 family, member D" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 47/142 (33%), Positives = 74/142 (52%)

Query:    17 RLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHL 76
             +L V+NS L  + ++ EL+L +  ++ +P  + +L +L  ++L++N + TI+   +F HL
Sbjct:   624 KLLVLNS-LKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNSIRTIEEIISFQHL 682

Query:    77 RELN---LSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLDLSNNN 133
             + L    L  NK   IP  I H                   P  +  +QKL  LD+S NN
Sbjct:   683 KRLTCLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESL--PVAVFSLQKLRCLDVSYNN 740

Query:   134 IRKIPYELGLAQQLHHLNLVGN 155
             I  IP E+GL Q L HL++ GN
Sbjct:   741 ISTIPIEIGLLQNLQHLHITGN 762

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1927197 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 48/175 (27%), Positives = 92/175 (52%)

Query:    10 QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
             + +L+ N+L  +   +  + S+  L LS+NL++ LP  L NLR L  ++LE NKLE++  
Sbjct:   406 ELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPN 465

Query:    70 DFNF-GHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLD 128
             +  +   L++L L++N+   +P+ I H                   PE++  ++ L  L 
Sbjct:   466 EIAYLKDLQKLVLTNNQLSTLPRGIGHLTNLTHLGLGENLLTHL--PEEIGTLENLEELY 523

Query:   129 LSNN-NIRKIPYELGLAQQLHHLNLVGNC-FKYPRQDILQKGTPFLLSYLRDKLP 181
             L++N N+  +P+EL L  +L  ++ + NC   +    I+  G  F++ +L+ + P
Sbjct:   524 LNDNPNLHSLPFELALCSKLSIMS-IENCPLSHLPPQIVAGGPSFIIQFLKMQGP 577

GO:0000164 "protein phosphatase type 1 complex" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISO

ZFIN|ZDB-GENE-050208-523 shoc2 "soc-2 suppressor of clear homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 52/174 (29%), Positives = 85/174 (48%)

Query:     4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK 63
             +E    + DLS   +H++ S + ++T + EL L  N +Q+LPP++  L  LV + L  N 
Sbjct:    77 REENSMRLDLSKRSIHLLPSSIKELTQLTELYLYSNKLQSLPPEVGCLSGLVTLALSENS 136

Query:    64 LETI-DIDFNFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVK-M 121
             L ++ D   N   LR L+L  NK ++IP  ++                     EK +K +
Sbjct:   137 LTSLPDSLDNLKKLRMLDLRHNKLREIPAVVYRVSSLTTLYLRFNRITTV---EKDIKNL 193

Query:   122 QKLTVLDLSNNNIRKIPYELG---------LAQ-QLHHL-NLVGNCFKYPRQDI 164
              KLT+L +  N I+++P E+G         +A  QL HL   +GNC +    D+
Sbjct:   194 SKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDL 247

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q8AVI4 shoc2 "Leucine-rich repeat protein SHOC-2" [Xenopus laevis (taxid:8355)]

 Score = 169 (64.5 bits), Expect = 9.5e-12, P = 9.5e-12
 Identities = 48/175 (27%), Positives = 92/175 (52%)

Query:    10 QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
             + +L+ N+L  +   +  + SI  L LS+NL++ LP  + NLR L  ++LE NKLE++  
Sbjct:   401 ELNLATNQLTKIPEDVSGLVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPN 460

Query:    70 DFNF-GHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVLD 128
             +  +   L++L L++N+   +P+ I H                   PE++  ++ L  L 
Sbjct:   461 EIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHL--PEEIGTLENLEELY 518

Query:   129 LSNN-NIRKIPYELGLAQQLHHLNLVGNC-FKYPRQDILQKGTPFLLSYLRDKLP 181
             L++N N+  +P+EL L  +L  ++ + NC   +    I+  G  F++ +L+ + P
Sbjct:   519 LNDNPNLHSLPFELALCSKLSIMS-IENCPLSHLPPQIVAGGPSFIIQFLKMQGP 572

GO:0000164 "protein phosphatase type 1 complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 54/150 (36%), Positives = 76/150 (50%), Gaps = 9/150 (6%)

Query: 13  LSYNRLH-VVNSKLFDITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
           L YN L   +  ++  +TS+  LDL +N L   +P  L NL++L Y+ L  NKL +  I 
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL-SGPIP 277

Query: 71  ---FNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
              F+   L  L+LS N    +IP+ +  L NLEIL L +N+      P  L  + +L V
Sbjct: 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQV 336

Query: 127 LDL-SNNNIRKIPYELGLAQQLHHLNLVGN 155
           L L SN    +IP  LG    L  L+L  N
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)

Query: 29  TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI--DIDFNFGHLRELNLSSNKF 86
             +  LDL+ N +++   +LL L +L  ++L+NN +  I   I     +L+EL+LS NK 
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 87  QQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQ 146
           + +P  + +L NL+ L L+ ND+ ++  P+ L  +  L  LDLS N I  +P E+ L   
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNLDLSGNKISDLPPEIELLSA 210

Query: 147 LHHLNLVGN 155
           L  L+L  N
Sbjct: 211 LEELDLSNN 219

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 5   EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNL-RHLVYMNLENNK 63
              +   DL+ NRL    S+L ++T++  LDL +N I ++PP +  L  +L  ++L +NK
Sbjct: 92  LLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK 151

Query: 64  LETIDID-FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQ 122
           +E++     N  +L+ L+LS N    +PK + +L NL  L L+ N I ++  P ++  + 
Sbjct: 152 IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL--PPEIELLS 209

Query: 123 KLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
            L  LDLSNN+I ++   L   + L  L L  N
Sbjct: 210 ALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 12  DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL-ETIDI 69
           D+S N L   +NS+ +D+ S++ L L+ N      PD    + L  ++L  N+    +  
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493

Query: 70  DF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQKLTV 126
              +   L +L LS NK   +IP  +     L  L L++N +  +I  P    +M  L+ 
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI--PASFSEMPVLSQ 551

Query: 127 LDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
           LDLS N +  +IP  LG  + L  +N+  N  
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 4e-07
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 75  HLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133
           +L+ L+LS+N+   IP   F  L NL++L L+ N++  I+ PE    +  L  LDLS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNN 59

Query: 134 I 134
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 4/142 (2%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK-LETIDID 70
           DLS+N L  +   L +++++  LDLS N I +LPP++  L  L  ++L NN  +E +   
Sbjct: 169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSL 228

Query: 71  FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
            N  +L  L LS+NK + +P+ I +L NLE L L+NN I  I+    L  +  L  LDLS
Sbjct: 229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS---SLGSLTNLRELDLS 285

Query: 131 NNNIRKIPYELGLAQQLHHLNL 152
            N++      + L   L  L L
Sbjct: 286 GNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 30 SIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKF 86
          +++ LDLS+N +  +P      L +L  ++L  N L +I  +       LR L+LS N  
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 44  LPPDLLNLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSNKFQ-QIPKCIFHLDNL 99
           +P D+  LRHL  +NL  N +   +I  + G    L  L+LS N F   IP+ +  L +L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 100 EILILNNN 107
            IL LN N
Sbjct: 493 RILNLNGN 500

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 88  QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQ 146
            IP  I  L +L+ + L+ N I   N P  L  +  L VLDLS N+    IP  LG    
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 147 LHHLNLVGN 155
           L  LNL GN
Sbjct: 492 LRILNLNGN 500

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 11/134 (8%)

Query: 8   VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI 67
           +++ +LS NR+  +  +L   ++++ LDL HN I  LP +L     L Y+++ +N + T+
Sbjct: 243 IQEMELSINRITELPERL--PSALQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTL 298

Query: 68  DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
                 G +  LN+ SN    +P+ +     L+ L    N +  +  P  L    +L VL
Sbjct: 299 PAHLPSG-ITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSL--PASLPP--ELQVL 351

Query: 128 DLSNNNIRKIPYEL 141
           D+S N I  +P  L
Sbjct: 352 DVSKNQITVLPETL 365

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 12 DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL 64
          DLS NRL V+    F  + +++ LDLS N + ++ P+    L  L  ++L  N L
Sbjct: 6  DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 11/136 (8%)

Query: 27  DITSIRELDLS-HNLIQNLPPDLLNLRHLVYMNLENNKLE---TIDIDFNFGHLRELNLS 82
           + + +  +DLS  N+   +   +  L ++  +NL NN+L      DI      LR LNLS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 83  SNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQKLTVLDLSNNNIR-KIPY 139
           +N F   IP+    + NLE L L+NN +  EI  P  +     L VLDL  N +  KIP 
Sbjct: 127 NNNFTGSIPRG--SIPNLETLDLSNNMLSGEI--PNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 140 ELGLAQQLHHLNLVGN 155
            L     L  L L  N
Sbjct: 183 SLTNLTSLEFLTLASN 198

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 53  HLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDI 109
           +L  ++L NN+L  I         +L+ L+LS N    I    F  L +L  L L+ N++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 41/177 (23%)

Query: 29  TSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLREL-------- 79
           +S++ LDL  N L+  +P  L NL  L ++ L +N+L    I    G ++ L        
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL-VGQIPRELGQMKSLKWIYLGYN 222

Query: 80  NLS--------------------SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV 119
           NLS                    +N    IP  + +L NL+ L L  N +     P  + 
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIF 281

Query: 120 KMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF---------KYPRQDILQ 166
            +QKL  LDLS+N++  +IP  +   Q L  L+L  N F           PR  +LQ
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 98  NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           NL+ L L+NN +  I        +  L VLDLS NN+  I  E   GL   L  L+L GN
Sbjct: 1   NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGL-PSLRSLDLSGN 58

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.0 bits (79), Expect = 0.003
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 98  NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP 138
           NLE L L+NN I ++     L  +  L  LDLS N I  + 
Sbjct: 2   NLETLDLSNNQITDLP---PLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
KOG0617|consensus	264		99.86
KOG0472|consensus	565		99.85
KOG0617|consensus	264		99.85
KOG0472|consensus	565		99.77
KOG4194|consensus	873		99.76
KOG4194|consensus	873		99.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.75
KOG0532|consensus	722		99.7
KOG0444|consensus	1255		99.67
KOG0444|consensus	1255		99.64
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.54
KOG0618|consensus	1081		99.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.5
KOG4237|consensus	498		99.44
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.44
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.44
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.41
KOG1259|consensus	490		99.41
KOG0618|consensus	1081		99.41
KOG4237|consensus	498		99.4
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.36
KOG1259|consensus	490		99.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.36
KOG0532|consensus	722		99.3
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.26
KOG3207|consensus	505		99.22
KOG3207|consensus	505		99.19
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
KOG1909|consensus	382		99.01
KOG1909|consensus	382		99.0
KOG1644|consensus	233		98.98
KOG4579|consensus	177		98.9
KOG4579|consensus	177		98.89
PLN03150	623	hypothetical protein; Provisional	98.88
KOG0531|consensus	414		98.87
KOG0531|consensus	414		98.86
PLN03150	623	hypothetical protein; Provisional	98.86
KOG2982|consensus	418		98.8
KOG1859|consensus	1096		98.77
KOG1859|consensus	1096		98.76
KOG4658|consensus	889		98.7
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.61
KOG1644|consensus	233		98.57
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.53
KOG3665|consensus	699		98.45
KOG2120|consensus	419		98.43
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
KOG4658|consensus	889		98.33
PRK15386	426	type III secretion protein GogB; Provisional	98.31
KOG3665|consensus	699		98.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.2
KOG2120|consensus	419		98.18
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.06
KOG2982|consensus	418		98.05
KOG2123|consensus	388		97.89
KOG2739|consensus	260		97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.53
KOG2739|consensus	260		97.22
KOG2123|consensus	388		96.95
KOG4308|consensus	478		96.74
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.72
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.47
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.52
smart00370	26	LRR Leucine-rich repeats, outliers.	95.52
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.44
smart00370	26	LRR Leucine-rich repeats, outliers.	95.44
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.7
KOG4308|consensus	478		94.6
KOG1947|consensus	482		94.49
KOG4341|consensus	483		93.89
KOG1947|consensus	482		93.44
KOG0473|consensus	326		93.08
KOG4341|consensus	483		92.8
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	92.52
KOG0473|consensus	326		92.29
KOG3864|consensus	221		91.42
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.6
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.52
KOG3763|consensus	585		82.92
KOG3864|consensus	221		81.98

>KOG0617|consensus

Probab=99.86  E-value=1.4e-23  Score=137.18  Aligned_cols=172  Identities=28%  Similarity=0.526  Sum_probs=107.0

Q ss_pred             CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCC
Q psy3781           5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSS   83 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~   83 (183)
                      +..++.|.+++|.++.+|+.+.++.+|+.+++.+|+++++|.+++.+++|+.|.++-|.+..+|.++ .++.|+.||+++
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            4455666666666666666666666666666666666666666666666666666666666666666 666666666666


Q ss_pred             CCCC--CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCc-----
Q psy3781          84 NKFQ--QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNC-----  156 (183)
Q Consensus        84 ~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~-----  156 (183)
                      |++.  .+|..++-+..|+.|++++|.+.-+  |...+.+++|+.+.+..|.+-++|..++.+..|+.|++.+|.     
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe~l--p~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFEIL--PPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcccC--ChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence            6665  3455555555666666666666555  555666666666666666666666655555555555555554     


Q ss_pred             ---------------------CCCCcHHHhhhChHHHHHHHhh
Q psy3781         157 ---------------------FKYPRQDILQKGTPFLLSYLRD  178 (183)
Q Consensus       157 ---------------------~~~~~~~~~~~~~~~~~~~l~~  178 (183)
                                           +...+.+.|.-+..+.++|++.
T Consensus       190 pel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirt  232 (264)
T KOG0617|consen  190 PELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRT  232 (264)
T ss_pred             hhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhh
Confidence                                 4444555555566666666654

>KOG0472|consensus

Probab=99.85  E-value=7.1e-23  Score=149.15  Aligned_cols=173  Identities=40%  Similarity=0.704  Sum_probs=148.9

Q ss_pred             ccEEecCCCcceecccccccCCC-ccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITS-IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNK   85 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~-l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~   85 (183)
                      ++.++++.|++.++|..+..+.. ++.+.+++|.+..+|..+..+++++.|++++|-+.++|... .+..|+.++++.|+
T Consensus       390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr  469 (565)
T KOG0472|consen  390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR  469 (565)
T ss_pred             eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc
Confidence            45566666666666666554443 33455666666666677788999999999999999999888 88889999999999


Q ss_pred             CCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHh
Q psy3781          86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDIL  165 (183)
Q Consensus        86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  165 (183)
                      +..+|..++....++.+-.++|++..+. +..++++.+|.+|++..|.++.+|+.+++++++++|.++||+|+.++..++
T Consensus       470 Fr~lP~~~y~lq~lEtllas~nqi~~vd-~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iL  548 (565)
T KOG0472|consen  470 FRMLPECLYELQTLETLLASNNQIGSVD-PSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQIL  548 (565)
T ss_pred             cccchHHHhhHHHHHHHHhccccccccC-hHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHHh
Confidence            9999998888888888877889999986 677999999999999999999999999999999999999999999999999


Q ss_pred             hhChHHHHHHHhhcCC
Q psy3781         166 QKGTPFLLSYLRDKLP  181 (183)
Q Consensus       166 ~~~~~~~~~~l~~~~~  181 (183)
                      .+++..++.|+++.+|
T Consensus       549 mkgT~aiL~ylrdrIp  564 (565)
T KOG0472|consen  549 MKGTAAILSYLRDRIP  564 (565)
T ss_pred             ccChHHHHHHhcccCC
Confidence            9999999999999988

>KOG0617|consensus

Probab=99.85  E-value=1.5e-23  Score=137.01  Aligned_cols=142  Identities=30%  Similarity=0.502  Sum_probs=113.9

Q ss_pred             cccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcE
Q psy3781          23 SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEI  101 (183)
Q Consensus        23 ~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  101 (183)
                      ++++++.+++.+.++.|+++.+|+.+..+.+|+.|.+.+|++.++|... ++++|+.|+++.|++..+|.+++.++.|+.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            3456677788888888888888888888888888888888888888877 788888888888888888888888888888


Q ss_pred             EEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHH
Q psy3781         102 LILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDI  164 (183)
Q Consensus       102 l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  164 (183)
                      |++.+|++.+...|..|..++.|+.+++++|.|.-+|..++.+++|+.|.+++|.+-..+.++
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkei  169 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEI  169 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHH
Confidence            888888887766677777788888888888888888888888888888888888776666554

>KOG0472|consensus

Probab=99.77  E-value=3.8e-21  Score=140.24  Aligned_cols=168  Identities=35%  Similarity=0.622  Sum_probs=125.8

Q ss_pred             cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCC
Q psy3781           9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQ   87 (183)
Q Consensus         9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~   87 (183)
                      ..+++.+|.+.++|+..-++..+++++...|-++.+|+.+.++.+|+.|++..|++..+| .+ ++..|.+++++.|.+.
T Consensus       163 ~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  163 SKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             HHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH
Confidence            333444444444444333344445555555555555555666666666666666666666 33 6666677777777777


Q ss_pred             Ccchhcc-CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781          88 QIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus        88 ~~~~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                      .+|.... +++++..|++.+|.++++  |..+.-+.+|+.+|+++|.++.+|..++++ +|+.|-+.||+++.+..++++
T Consensus       242 ~lpae~~~~L~~l~vLDLRdNklke~--Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~  318 (565)
T KOG0472|consen  242 MLPAEHLKHLNSLLVLDLRDNKLKEV--PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIIS  318 (565)
T ss_pred             hhHHHHhcccccceeeeccccccccC--chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHc
Confidence            7766444 688899999999999998  788888889999999999999999999999 999999999999999999999


Q ss_pred             hChHHHHHHHhhcC
Q psy3781         167 KGTPFLLSYLRDKL  180 (183)
Q Consensus       167 ~~~~~~~~~l~~~~  180 (183)
                      +++..+++|++.+.
T Consensus       319 ~gT~~vLKyLrs~~  332 (565)
T KOG0472|consen  319 KGTQEVLKYLRSKI  332 (565)
T ss_pred             ccHHHHHHHHHHhh
Confidence            99999999999854

>KOG4194|consensus

Probab=99.76  E-value=8.2e-20  Score=138.82  Aligned_cols=165  Identities=28%  Similarity=0.377  Sum_probs=96.6

Q ss_pred             CCCCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781           4 KEAQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLREL   79 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L   79 (183)
                      .|.++++|+++.|++..+.. +++++..|+.|++++|.|+++... +.-.++|+.|++++|.++.++.+.  .+..|++|
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            34444455555554443322 233455555555555555544322 333445555555555555554443  44555555


Q ss_pred             eCCCCCCCCcchh-ccCCCCCcEEEcCCCcccccc--CchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCC
Q psy3781          80 NLSSNKFQQIPKC-IFHLDNLEILILNNNDIEEIN--QPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGN  155 (183)
Q Consensus        80 ~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n  155 (183)
                      .++.|+++.+.++ +..+++|+.|++.+|.+....  ....|.++++|+.|.+.||++..+|. ++.++..|++|++.+|
T Consensus       347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence            5555555555443 223566677777777654321  14556667788888888888887774 4788888888888888


Q ss_pred             cCCCCcHHHhhhC
Q psy3781         156 CFKYPRQDILQKG  168 (183)
Q Consensus       156 ~~~~~~~~~~~~~  168 (183)
                      +|..+-++.|.+.
T Consensus       427 aiaSIq~nAFe~m  439 (873)
T KOG4194|consen  427 AIASIQPNAFEPM  439 (873)
T ss_pred             cceeecccccccc
Confidence            8888888887776

>KOG4194|consensus

Probab=99.76  E-value=1.4e-19  Score=137.66  Aligned_cols=165  Identities=27%  Similarity=0.366  Sum_probs=95.9

Q ss_pred             CCCCccEEecCCCcceeccccccc-CCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLREL   79 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~-~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L   79 (183)
                      .+.+|..|.++.|.++.+|...|. +++|+.|+|..|.+..+ --.|.++++|+.|.+..|.+..+.++.  .+.++++|
T Consensus       195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l  274 (873)
T KOG4194|consen  195 SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL  274 (873)
T ss_pred             ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence            334444444444444444444442 55555555555544433 112445555555555555555565655  66667777


Q ss_pred             eCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcC
Q psy3781          80 NLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCF  157 (183)
Q Consensus        80 ~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~  157 (183)
                      +++.|+++.+.. +++.+..|+.|+++.|.|..+. +..|..+++|+.|+++.|.++++++. +..+..|+.|.+++|.+
T Consensus       275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             ecccchhhhhhcccccccchhhhhccchhhhheee-cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence            777777766543 4556667777777777777666 66676777777777777777766544 55566666666666666


Q ss_pred             CCCcHHHhhhCh
Q psy3781         158 KYPRQDILQKGT  169 (183)
Q Consensus       158 ~~~~~~~~~~~~  169 (183)
                      .......|....
T Consensus       354 ~~l~e~af~~ls  365 (873)
T KOG4194|consen  354 DHLAEGAFVGLS  365 (873)
T ss_pred             HHHHhhHHHHhh
Confidence            655555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.75  E-value=8.6e-18  Score=140.29  Aligned_cols=128  Identities=29%  Similarity=0.385  Sum_probs=54.8

Q ss_pred             CCCccEEecCCCcce-ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCcccc-ccCcc-ccCCCCeEe
Q psy3781           5 EAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLET-IDIDF-NFGHLRELN   80 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~-~~~~L~~L~   80 (183)
                      +++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.. ++..+ .+.+|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            344555555555544 34444444555555555555443 344444444445555554444432 22222 344444444


Q ss_pred             CCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC
Q psy3781          81 LSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN  133 (183)
Q Consensus        81 l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~  133 (183)
                      +++|.++ .+|..+..+++|+.|++++|.+.+.. +..++.+++|+.|++++|.
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCe
Confidence            4444443 22333333444444444444433322 3333333333333333333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.75  E-value=1.6e-17  Score=138.70  Aligned_cols=157  Identities=25%  Similarity=0.341  Sum_probs=78.5

Q ss_pred             CCCCCccEEecCCCcce-ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCccccc-------------
Q psy3781           3 AKEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLETI-------------   67 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~l~~~-------------   67 (183)
                      ..+++|+.|++++|.+. .+|..+..++.++.+++++|.++ .++..+..+++|+.|++++|.+...             
T Consensus       401 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L  480 (968)
T PLN00113        401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL  480 (968)
T ss_pred             hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEE
Confidence            34556666666666665 34444455666666666666555 2333333444555555554444321             


Q ss_pred             -----------cCcc-ccCCCCeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCC
Q psy3781          68 -----------DIDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNI  134 (183)
Q Consensus        68 -----------~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l  134 (183)
                                 +..+ .+++|++|++++|.+. .+|..+..+++|+.|++++|.+++.. +..++.+++|+.|++++|.+
T Consensus       481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l  559 (968)
T PLN00113        481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI-PASFSEMPVLSQLDLSQNQL  559 (968)
T ss_pred             ECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC-ChhHhCcccCCEEECCCCcc
Confidence                       1112 3344444444444444 23334444455555555555555443 44455555555555555555


Q ss_pred             c-cCChhccccCcccEEeccCCcCCCC
Q psy3781         135 R-KIPYELGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus       135 ~-~~~~~~~~~~~L~~l~l~~n~~~~~  160 (183)
                      + .+|..+..+++|+.+++++|++.+.
T Consensus       560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~  586 (968)
T PLN00113        560 SGEIPKNLGNVESLVQVNISHNHLHGS  586 (968)
T ss_pred             cccCChhHhcCcccCEEeccCCcceee
Confidence            4 4455455555555555555555443

>KOG0532|consensus

Probab=99.70  E-value=3.4e-19  Score=134.87  Aligned_cols=167  Identities=29%  Similarity=0.437  Sum_probs=135.4

Q ss_pred             ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKF   86 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~   86 (183)
                      |+.+.++.|++..+|..+..+..+++++|+.|+++.+|..++.+ -|+.|.+++|+++.+|... ..++|..++.+.|.+
T Consensus       100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence            44555666666677777777777777777777777777766543 4677777777777777777 667777888888888


Q ss_pred             CCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781          87 QQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus        87 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                      ..++..++.+.+|+.+.+.+|++..+  +..+. .-.|..||++.|.+..+|..+..+..|++|-|++|+++.++.+++.
T Consensus       179 ~slpsql~~l~slr~l~vrRn~l~~l--p~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  179 QSLPSQLGYLTSLRDLNVRRNHLEDL--PEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             hhchHHhhhHHHHHHHHHhhhhhhhC--CHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence            88877777777888888888888877  56666 5678899999999999999999999999999999999999999999


Q ss_pred             hChHHHHHHHhh
Q psy3781         167 KGTPFLLSYLRD  178 (183)
Q Consensus       167 ~~~~~~~~~l~~  178 (183)
                      +++.++.+||..
T Consensus       256 kGkVHIFKyL~~  267 (722)
T KOG0532|consen  256 KGKVHIFKYLST  267 (722)
T ss_pred             ccceeeeeeecc
Confidence            999999999875

>KOG0444|consensus

Probab=99.67  E-value=1.9e-18  Score=133.01  Aligned_cols=152  Identities=30%  Similarity=0.393  Sum_probs=105.9

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLS   82 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~   82 (183)
                      .+.+|..+|+++|+++.+|..+..+++|+.|++++|+++++........++++|.++.|+++.+|+.+ .+++|+.|.+.
T Consensus       220 ~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n  299 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYAN  299 (1255)
T ss_pred             hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhc
Confidence            34556666666666666666666666666666666666666555555666666666666666666666 66666666666


Q ss_pred             CCCCC--CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcC
Q psy3781          83 SNKFQ--QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF  157 (183)
Q Consensus        83 ~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~  157 (183)
                      +|+++  .+|++++++.+|+.+..++|.+.-+  |+.+..|..|+.|.++.|.+..+|+.+.-++-++.|+++.|+=
T Consensus       300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LElV--PEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLELV--PEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             cCcccccCCccchhhhhhhHHHHhhccccccC--chhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcC
Confidence            66555  5666666666666666666666655  6777778888888888888888888888888888888888863

>KOG0444|consensus

Probab=99.64  E-value=7.1e-18  Score=129.85  Aligned_cols=163  Identities=26%  Similarity=0.393  Sum_probs=148.3

Q ss_pred             CCCCCCccEEecCCCcce--ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCe
Q psy3781           2 IAKEAQVEQADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRE   78 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~   78 (183)
                      +..+++|++|.+++.+-+  .+|+.+-++.+|+.++++.|.+..+|..+..+.+|+.|.+++|.++.+.... .|.++++
T Consensus       193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEt  272 (1255)
T KOG0444|consen  193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLET  272 (1255)
T ss_pred             CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhh
Confidence            456778888888887555  7899998999999999999999999999999999999999999999998888 8999999


Q ss_pred             EeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCC
Q psy3781          79 LNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK  158 (183)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~  158 (183)
                      |++++|+++.+|..+.++++|+.|++.+|.++-.+.|..++.+.+|+.+..++|.+.-+|+.+..|..|+.|.++.|.+-
T Consensus       273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi  352 (1255)
T KOG0444|consen  273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI  352 (1255)
T ss_pred             hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee
Confidence            99999999999999999999999999999988777699999999999999999999999999999999999999999887


Q ss_pred             CCcHHH
Q psy3781         159 YPRQDI  164 (183)
Q Consensus       159 ~~~~~~  164 (183)
                      ..+..+
T Consensus       353 TLPeaI  358 (1255)
T KOG0444|consen  353 TLPEAI  358 (1255)
T ss_pred             echhhh
Confidence            777655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.63  E-value=5.9e-16  Score=103.77  Aligned_cols=138  Identities=28%  Similarity=0.359  Sum_probs=58.0

Q ss_pred             CCCcceecccccccCCCccEEEcCCCcCCCCCcccc-CCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchh
Q psy3781          14 SYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC   92 (183)
Q Consensus        14 ~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~   92 (183)
                      ..+-|...+... +..++++|++.+|.|+.+. .+. .+.+++.|++++|.++.++....++.|++|++++|+++.+...
T Consensus         5 t~~~i~~~~~~~-n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen    5 TANMIEQIAQYN-NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred             cccccccccccc-ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence            333444333322 3457899999999999875 344 5789999999999999987544889999999999999998665


Q ss_pred             cc-CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh----ccccCcccEEecc
Q psy3781          93 IF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE----LGLAQQLHHLNLV  153 (183)
Q Consensus        93 ~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~L~~l~l~  153 (183)
                      +. .+++|+.|++++|.+.++.....++.+++|+.|++.+|++++.+..    +..+|+|+.||-.
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            53 5899999999999999887567888899999999999999966542    6789999988754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.56  E-value=2.6e-14  Score=115.18  Aligned_cols=148  Identities=25%  Similarity=0.378  Sum_probs=92.9

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK   85 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~   85 (183)
                      .+|+.|++++|.+..+|..+.  .+|+.|++++|+++.+|..+.  .+|+.|++++|.++.+|..+ ..+|+.|++++|+
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~  294 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENL-PEELRYLSVYDNS  294 (754)
T ss_pred             cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCcccccc-CCCCcEEECCCCc
Confidence            467888888888777776543  356777777777766665543  35666666666666555433 1355666666665


Q ss_pred             CCCcchhcc-------------------CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCc
Q psy3781          86 FQQIPKCIF-------------------HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQ  146 (183)
Q Consensus        86 ~~~~~~~~~-------------------~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~  146 (183)
                      ++.+|..+.                   ..++|+.|++++|.++.+  +..+  .++|+.|++++|.++.+|..+  .++
T Consensus       295 Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~L--P~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~  368 (754)
T PRK15370        295 IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSL--PASL--PPELQVLDVSKNQITVLPETL--PPT  368 (754)
T ss_pred             cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccC--Chhh--cCcccEEECCCCCCCcCChhh--cCC
Confidence            554433211                   124566666666666655  3322  257888888888888777654  357


Q ss_pred             ccEEeccCCcCCCCcHHH
Q psy3781         147 LHHLNLVGNCFKYPRQDI  164 (183)
Q Consensus       147 L~~l~l~~n~~~~~~~~~  164 (183)
                      |+.|++++|.+...++..
T Consensus       369 L~~LdLs~N~Lt~LP~~l  386 (754)
T PRK15370        369 ITTLDVSRNALTNLPENL  386 (754)
T ss_pred             cCEEECCCCcCCCCCHhH
Confidence            888888888888776654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.55  E-value=3.7e-14  Score=114.08  Aligned_cols=105  Identities=22%  Similarity=0.283  Sum_probs=76.7

Q ss_pred             CCceEEcCCCccccccCcc------------------ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccC
Q psy3781          53 HLVYMNLENNKLETIDIDF------------------NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ  114 (183)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  114 (183)
                      +|++|++++|.++.+|...                  ...+|+.|++++|.++.+|..   .++|+.|++++|.++.+  
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssI--  417 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSL--  417 (788)
T ss_pred             ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCC--
Confidence            5777777777777655321                  112466677777766665542   24677788888887765  


Q ss_pred             chhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHh
Q psy3781         115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDIL  165 (183)
Q Consensus       115 ~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  165 (183)
                      |..   ...|+.|++++|.++.+|..+..++.++.+++++|++++..+..+
T Consensus       418 P~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        418 PML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             Ccc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            332   246788899999999999989999999999999999999887766

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.54  E-value=3.5e-14  Score=114.42  Aligned_cols=147  Identities=22%  Similarity=0.315  Sum_probs=115.6

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK   85 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~   85 (183)
                      +.++.|++++|.++.+|..++  .+|+.|++++|+++.+|..+.  ..|+.|++++|.+..+|..+ ..+|+.|++++|+
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~  273 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL-PSALQSLDLFHNK  273 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH-hCCCCEEECcCCc
Confidence            368999999999999988765  589999999999999887654  47999999999999887665 3479999999999


Q ss_pred             CCCcchhccCCCCCcEEEcCCCccccccCchhhh-------------------cCCCccEEeCCCCCCccCChhccccCc
Q psy3781          86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV-------------------KMQKLTVLDLSNNNIRKIPYELGLAQQ  146 (183)
Q Consensus        86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-------------------~~~~L~~l~l~~n~l~~~~~~~~~~~~  146 (183)
                      ++.+|..+.  ++|+.|++++|.++.+.  ..+.                   ..++|+.|++++|.++.+|..+  +++
T Consensus       274 L~~LP~~l~--~sL~~L~Ls~N~Lt~LP--~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~s  347 (754)
T PRK15370        274 ISCLPENLP--EELRYLSVYDNSIRTLP--AHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PPE  347 (754)
T ss_pred             cCccccccC--CCCcEEECCCCccccCc--ccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cCc
Confidence            998877554  58999999999988753  2111                   1245777777777777777554  368


Q ss_pred             ccEEeccCCcCCCCcHH
Q psy3781         147 LHHLNLVGNCFKYPRQD  163 (183)
Q Consensus       147 L~~l~l~~n~~~~~~~~  163 (183)
                      |+.|++++|.++..+..
T Consensus       348 L~~L~Ls~N~L~~LP~~  364 (754)
T PRK15370        348 LQVLDVSKNQITVLPET  364 (754)
T ss_pred             ccEEECCCCCCCcCChh
Confidence            88889998888866543

>KOG0618|consensus

Probab=99.50  E-value=3e-15  Score=119.16  Aligned_cols=117  Identities=32%  Similarity=0.499  Sum_probs=88.2

Q ss_pred             ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCcc
Q psy3781          48 LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT  125 (183)
Q Consensus        48 ~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~  125 (183)
                      +.++.+|+.|++++|.++.+|+..  .+..|++|++++|+++.+|..+..++.|+.|...+|.+...  | .+..++.|+
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f--P-e~~~l~qL~  455 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF--P-ELAQLPQLK  455 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec--h-hhhhcCcce
Confidence            556678888888888888887766  77788888888888888887777788888888888887766  5 777888999


Q ss_pred             EEeCCCCCCccC--ChhccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781         126 VLDLSNNNIRKI--PYELGLAQQLHHLNLVGNCFKYPRQDILQKG  168 (183)
Q Consensus       126 ~l~l~~n~l~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  168 (183)
                      .+|++.|.++.+  +.... .++|++|+++||.-.......+..-
T Consensus       456 ~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l  499 (1081)
T KOG0618|consen  456 VLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVL  499 (1081)
T ss_pred             EEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHh
Confidence            999999988843  33221 2789999999997655555554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.50  E-value=2e-14  Score=106.14  Aligned_cols=162  Identities=25%  Similarity=0.356  Sum_probs=92.0

Q ss_pred             ccEEecCCCcce-----ecccccccC-CCccEEEcCCCcCC-----CCCccccCCCCCceEEcCCCcccc-----ccCcc
Q psy3781           8 VEQADLSYNRLH-----VVNSKLFDI-TSIRELDLSHNLIQ-----NLPPDLLNLRHLVYMNLENNKLET-----IDIDF   71 (183)
Q Consensus         8 l~~l~l~~~~i~-----~l~~~~~~~-~~l~~l~l~~~~l~-----~l~~~~~~~~~L~~L~l~~n~l~~-----~~~~~   71 (183)
                      |+.|++++|.+.     .+...+..+ ++|+.+++++|.++     .+...+..++++++|++++|.++.     +....
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l  189 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL  189 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence            555555555554     112223334 56666666666655     122234445566677776666652     11112


Q ss_pred             -ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccCchhhh-c----CCCccEEeCCCCCCc-----
Q psy3781          72 -NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQPEKLV-K----MQKLTVLDLSNNNIR-----  135 (183)
Q Consensus        72 -~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-~----~~~L~~l~l~~n~l~-----  135 (183)
                       ..++|++|++++|.++.     +...+..+++|+.|++++|.+++.. ...+. .    .+.|+.+++++|.++     
T Consensus       190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~-~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~  268 (319)
T cd00116         190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG-AAALASALLSPNISLLTLSLSCNDITDDGAK  268 (319)
T ss_pred             HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH-HHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence             34567777777776652     2233445667777777777776543 22221 2    257777777777775     


Q ss_pred             cCChhccccCcccEEeccCCcCCCCcHHHhhhChH
Q psy3781         136 KIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTP  170 (183)
Q Consensus       136 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  170 (183)
                      .+...+..+++|+.+++++|.++..+...+.+..+
T Consensus       269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~  303 (319)
T cd00116         269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL  303 (319)
T ss_pred             HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence            23334555677888888888888777666655433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237|consensus

Probab=99.44  E-value=1.6e-15  Score=110.82  Aligned_cols=64  Identities=27%  Similarity=0.419  Sum_probs=41.3

Q ss_pred             CccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCc-cccCCCCCceEEc-CCCccccccCc
Q psy3781           7 QVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNL-ENNKLETIDID   70 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l-~~n~l~~~~~~   70 (183)
                      ....++|..|.|+.+|++.| .+++|+.++|++|+|+.|.+ .|.++..+..|.+ ++|+|++++.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            34567777777777777766 57777777777777776543 3666666544443 33666655543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.44  E-value=2.3e-13  Score=91.35  Aligned_cols=111  Identities=30%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             ccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccE
Q psy3781          48 LLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV  126 (183)
Q Consensus        48 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~  126 (183)
                      +.+..+++.|++.+|.+..+.... .+.+|+.|++++|.++.+. ++..++.|+.|++++|.++++. ......+++|+.
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~   92 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C-HHHHHH-TT--E
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc-cchHHhCCcCCE
Confidence            444567899999999999887544 6789999999999999884 5677899999999999999984 333357899999


Q ss_pred             EeCCCCCCccCC--hhccccCcccEEeccCCcCCCC
Q psy3781         127 LDLSNNNIRKIP--YELGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus       127 l~l~~n~l~~~~--~~~~~~~~L~~l~l~~n~~~~~  160 (183)
                      |++++|.|.++.  ..++.+++|+.|++.+|++...
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            999999998664  3478899999999999998754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.44  E-value=1.3e-13  Score=104.84  Aligned_cols=160  Identities=34%  Similarity=0.466  Sum_probs=101.0

Q ss_pred             CCccEEecCCCcceecccccccCC-CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSS   83 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~-~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~   83 (183)
                      +.++.+++.++.+..+++...... +++.+++++|.+..++..+..++.|+.|++++|++.+++... ..+.++.+++++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            345566666666666666555553 666666666666666555555666666666666666666555 555566666666


Q ss_pred             CCCCCcchhccCCCCCcEEEcCCC-----------------------ccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781          84 NKFQQIPKCIFHLDNLEILILNNN-----------------------DIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE  140 (183)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~n-----------------------~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  140 (183)
                      |+++.++........|+.+.+++|                       .+...  +...+.++.++.+++++|.+++++. 
T Consensus       196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~-  272 (394)
T COG4886         196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSISS-  272 (394)
T ss_pred             CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceecccccccccccc-
Confidence            666555443322333444444444                       44433  3555666778888888888888877 


Q ss_pred             ccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781         141 LGLAQQLHHLNLVGNCFKYPRQDILQKG  168 (183)
Q Consensus       141 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~  168 (183)
                      +....+++.+++++|.+....+......
T Consensus       273 ~~~~~~l~~L~~s~n~~~~~~~~~~~~~  300 (394)
T COG4886         273 LGSLTNLRELDLSGNSLSNALPLIALLL  300 (394)
T ss_pred             ccccCccCEEeccCccccccchhhhccc
Confidence            7788888889998888877766655554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.41  E-value=2e-12  Score=104.27  Aligned_cols=54  Identities=19%  Similarity=0.246  Sum_probs=25.1

Q ss_pred             cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccc
Q psy3781           9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI   67 (183)
Q Consensus         9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~   67 (183)
                      ..|+++++.++.+|+.+.  ++++.|++.+|+++.+|..   .++|++|++++|.++.+
T Consensus       204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsL  257 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL  257 (788)
T ss_pred             cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcc
Confidence            345555555555554432  2444455555554444431   23444444444444443

>KOG1259|consensus

Probab=99.41  E-value=2e-14  Score=102.22  Aligned_cols=131  Identities=30%  Similarity=0.363  Sum_probs=78.7

Q ss_pred             CCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCC
Q psy3781          28 ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN  107 (183)
Q Consensus        28 ~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n  107 (183)
                      +..|+++++++|.|+.+..+..-.|.++.|+++.|.+..+.....+++|++||+++|.++.+...-..+.+++.|.+++|
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            34566666666666666555555666666666666666665533666666666666666655443334556666666666


Q ss_pred             ccccccCchhhhcCCCccEEeCCCCCCccCCh--hccccCcccEEeccCCcCCCCc
Q psy3781         108 DIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY--ELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       108 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~--~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      .+.++   ..+..+-+|..|++++|+|..+.+  .++.++-|+.+.+.+|++.+..
T Consensus       363 ~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  363 KIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            66554   334445566666666666664432  3566666666666666665544

>KOG0618|consensus

Probab=99.41  E-value=7.8e-15  Score=116.83  Aligned_cols=154  Identities=28%  Similarity=0.379  Sum_probs=92.8

Q ss_pred             CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCC
Q psy3781           7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNK   85 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~   85 (183)
                      +++.++++++.+..+|..+..+.+++.++..+|.++.+|..+....+|+++.+..|.+..+++.. ...+|++|++..|+
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            56777777777777777677777777777777777766665555556666666666666655555 45556666665555


Q ss_pred             CCCcchhcc--------------------------CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh
Q psy3781          86 FQQIPKCIF--------------------------HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY  139 (183)
Q Consensus        86 ~~~~~~~~~--------------------------~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~  139 (183)
                      +..+|..+.                          .++.|+.|++.+|.+++.. .+.+.+.++|+.|+++.|.++++|+
T Consensus       322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c-~p~l~~~~hLKVLhLsyNrL~~fpa  400 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC-FPVLVNFKHLKVLHLSYNRLNSFPA  400 (1081)
T ss_pred             ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc-hhhhccccceeeeeecccccccCCH
Confidence            543332111                          1223444555555555544 4455555666666666666666665


Q ss_pred             h-ccccCcccEEeccCCcCCCCc
Q psy3781         140 E-LGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       140 ~-~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      . +.++..|+.|+++||+++..+
T Consensus       401 s~~~kle~LeeL~LSGNkL~~Lp  423 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSGNKLTTLP  423 (1081)
T ss_pred             HHHhchHHhHHHhcccchhhhhh
Confidence            4 555566666666666666655

>KOG4237|consensus

Probab=99.40  E-value=1.6e-14  Score=105.68  Aligned_cols=87  Identities=28%  Similarity=0.357  Sum_probs=63.6

Q ss_pred             CCCCCCCccEEecCCCcceecccccc-cCCCccEEEcCC-CcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCC
Q psy3781           1 MIAKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSH-NLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGH   75 (183)
Q Consensus         1 ~l~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~-~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~   75 (183)
                      ||..+++|+.|||++|.|+.|.++.+ .++.+..+.+.+ |+|+.+|.. |.++..++-|.+.-|.+..+...+  .+++
T Consensus        86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~  165 (498)
T KOG4237|consen   86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS  165 (498)
T ss_pred             hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence            57778888999999999988877666 677776665555 888888876 667888888888888887665544  6666


Q ss_pred             CCeEeCCCCCCC
Q psy3781          76 LRELNLSSNKFQ   87 (183)
Q Consensus        76 L~~L~l~~~~~~   87 (183)
                      +..|.+-.|.+.
T Consensus       166 l~lLslyDn~~q  177 (498)
T KOG4237|consen  166 LSLLSLYDNKIQ  177 (498)
T ss_pred             cchhcccchhhh
Confidence            655555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.36  E-value=2.4e-13  Score=100.40  Aligned_cols=159  Identities=30%  Similarity=0.338  Sum_probs=79.5

Q ss_pred             CCCCccEEecCCCccee-cccccccCC---CccEEEcCCCcCCC-----CCccccCC-CCCceEEcCCCccccc-----c
Q psy3781           4 KEAQVEQADLSYNRLHV-VNSKLFDIT---SIRELDLSHNLIQN-----LPPDLLNL-RHLVYMNLENNKLETI-----D   68 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~-l~~~~~~~~---~l~~l~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~n~l~~~-----~   68 (183)
                      ++++|+.|++++|.+.. .+..+..+.   +|+.|++++|.++.     +...+..+ ++|+.|++++|.++.-     .
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            34566666666665542 222222222   36666666665551     22223344 5666666666665521     1


Q ss_pred             Ccc-ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCccC-C
Q psy3781          69 IDF-NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIRKI-P  138 (183)
Q Consensus        69 ~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~~~-~  138 (183)
                      ..+ .+.++++|++++|.++.     ++..+...++|+.|++++|.+.+...   ...+..+++|++|++++|.+++. .
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            111 34456666666666651     22233344566666666666654320   12233455666666666666531 1


Q ss_pred             hhc-c----ccCcccEEeccCCcCCCCcH
Q psy3781         139 YEL-G----LAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus       139 ~~~-~----~~~~L~~l~l~~n~~~~~~~  162 (183)
                      ..+ .    ..+.|+.+++++|.++....
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence            111 1    13566667776666654433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259|consensus

Probab=99.36  E-value=7.4e-14  Score=99.40  Aligned_cols=132  Identities=25%  Similarity=0.320  Sum_probs=113.6

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSN   84 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~   84 (183)
                      ..|+++|+++|.|+.+...+.=.++++.|++++|.+..+.. +..+++|+.||+++|.++.+..-- .+.++++|.+++|
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            35788999999999988888778999999999999997755 778999999999999988765433 7889999999999


Q ss_pred             CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh
Q psy3781          85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY  139 (183)
Q Consensus        85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~  139 (183)
                      .+..+ +++..+.+|..|++.+|+|........+++++.|+++.+.+|++..++.
T Consensus       363 ~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  363 KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            88877 5577788899999999999887657889999999999999999986654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.36  E-value=5.5e-13  Score=101.45  Aligned_cols=151  Identities=33%  Similarity=0.532  Sum_probs=115.5

Q ss_pred             EEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCC-CCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCC
Q psy3781          10 QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLR-HLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQ   87 (183)
Q Consensus        10 ~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~-~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~   87 (183)
                      .++...+.+..-...+.+...++.+.+.++.++.+++...... +|+.|++++|.+..++... .++.|+.|+++.|.+.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            4666667665444555566889999999999999999888785 9999999999999997555 8999999999999999


Q ss_pred             CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCC-----------------------CCccCChhcccc
Q psy3781          88 QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN-----------------------NIRKIPYELGLA  144 (183)
Q Consensus        88 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n-----------------------~l~~~~~~~~~~  144 (183)
                      .++...+..+.++.+++++|.+..+  +........|+.+.+++|                       .+..++..+..+
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l--~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l  254 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDL--PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL  254 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccC--chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence            9988766788999999999999988  444334444555555555                       333334445566


Q ss_pred             CcccEEeccCCcCCCCcH
Q psy3781         145 QQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus       145 ~~L~~l~l~~n~~~~~~~  162 (183)
                      +.++.+++++|.+.....
T Consensus       255 ~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         255 SNLETLDLSNNQISSISS  272 (394)
T ss_pred             cccceecccccccccccc
Confidence            667777777777766654

>KOG0532|consensus

Probab=99.30  E-value=3.6e-14  Score=108.11  Aligned_cols=159  Identities=28%  Similarity=0.376  Sum_probs=143.5

Q ss_pred             CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCC
Q psy3781           5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSN   84 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~   84 (183)
                      +.....+|++.|.+.++|..+..+..|+.+.++.|.+..+|..+..+..|++++++.|++..+|..+....|+.+-+++|
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNN  153 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNN  153 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecC
Confidence            34456688999999999999999999999999999999999999999999999999999999999985555999999999


Q ss_pred             CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHH
Q psy3781          85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDI  164 (183)
Q Consensus        85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  164 (183)
                      +++.+|..++...+|..++.+.|.+..+  +..++.+.+|+.+.+..|++..+|+.+..+ .|..||++.|++..++..+
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~nei~sl--psql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~f  230 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSKNEIQSL--PSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDF  230 (722)
T ss_pred             ccccCCcccccchhHHHhhhhhhhhhhc--hHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhh
Confidence            9999999888889999999999999998  788999999999999999999999988844 5899999999999998776


Q ss_pred             hh
Q psy3781         165 LQ  166 (183)
Q Consensus       165 ~~  166 (183)
                      ..
T Consensus       231 r~  232 (722)
T KOG0532|consen  231 RK  232 (722)
T ss_pred             hh
Confidence            43

>PLN03210 Resistant to P

Probab=99.26  E-value=8.7e-11  Score=99.95  Aligned_cols=134  Identities=21%  Similarity=0.341  Sum_probs=66.5

Q ss_pred             CCCCCCccEEecCCCcc------e-ecccccccCC-CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-c
Q psy3781           2 IAKEAQVEQADLSYNRL------H-VVNSKLFDIT-SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-N   72 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i------~-~l~~~~~~~~-~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~   72 (183)
                      |..|++|+.|.+..+..      . .+|.++..++ +|+.|.+.++.++.+|..| ...+|+.|++.++.+..++.+. .
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~  632 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS  632 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence            45566676666644321      1 2344443332 4556666665555555554 2345555666555555555444 5


Q ss_pred             cCCCCeEeCCCCC-CCCcchhccCCCCCcEEEcCCCc-cccccCchhhhcCCCccEEeCCCC-CCccCCh
Q psy3781          73 FGHLRELNLSSNK-FQQIPKCIFHLDNLEILILNNND-IEEINQPEKLVKMQKLTVLDLSNN-NIRKIPY  139 (183)
Q Consensus        73 ~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n-~l~~~~~  139 (183)
                      +++|+.++++++. +..+|. +..+++|+.|++.+|. +..+  +..++.+++|+.|++++| .++.+|.
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCccCC
Confidence            5555555555442 333332 3344555555555543 2222  444555555555555553 2334443

syringae 6; Provisional

>KOG3207|consensus

Probab=99.22  E-value=2.2e-12  Score=95.58  Aligned_cols=158  Identities=28%  Similarity=0.272  Sum_probs=98.3

Q ss_pred             CCCCccEEecCCCccee---cccccccCCCccEEEcCCCcCCCCCcc-c-cCCCCCceEEcCCCccccc--cCcc-ccCC
Q psy3781           4 KEAQVEQADLSYNRLHV---VNSKLFDITSIRELDLSHNLIQNLPPD-L-LNLRHLVYMNLENNKLETI--DIDF-NFGH   75 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~---l~~~~~~~~~l~~l~l~~~~l~~l~~~-~-~~~~~L~~L~l~~n~l~~~--~~~~-~~~~   75 (183)
                      .|+.++.||++.|=+..   +...+.++++|+.|+++.|.+...-.+ . ..+++++.|.++.|.+++-  ...+ .+|+
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            46677777777776552   333333677777777777776632222 1 1356777777777777632  2223 6777


Q ss_pred             CCeEeCCCCC-CCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC--Chh-----ccccCcc
Q psy3781          76 LRELNLSSNK-FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI--PYE-----LGLAQQL  147 (183)
Q Consensus        76 L~~L~l~~~~-~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~--~~~-----~~~~~~L  147 (183)
                      ++.|++..|. +............|+.|++++|++.+.......+.++.|+.++++.+.+.++  |..     ....++|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            7777777774 2211112223456778888888877764446667778888888888877744  222     2456778


Q ss_pred             cEEeccCCcCCCCc
Q psy3781         148 HHLNLVGNCFKYPR  161 (183)
Q Consensus       148 ~~l~l~~n~~~~~~  161 (183)
                      ++|++..|++....
T Consensus       304 ~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  304 EYLNISENNIRDWR  317 (505)
T ss_pred             eeeecccCcccccc
Confidence            88888888775554

>KOG3207|consensus

Probab=99.19  E-value=4.7e-12  Score=93.91  Aligned_cols=160  Identities=26%  Similarity=0.301  Sum_probs=123.0

Q ss_pred             CCCCCccEEecCCCcceeccccc--ccCCCccEEEcCCCcCC--CCCccccCCCCCceEEcCCCc-cccccCcc-ccCCC
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKL--FDITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNK-LETIDIDF-NFGHL   76 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~--~~~~~l~~l~l~~~~l~--~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~-~~~~L   76 (183)
                      ..+++|+.|+++.|.+.......  ..+++++.|.+++|.++  .+...+..+|+++.|++.+|. +..-.... -++.|
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L  248 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL  248 (505)
T ss_pred             HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence            46899999999999887332222  25789999999999999  344446679999999999995 33222233 67889


Q ss_pred             CeEeCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccCchh-----hhcCCCccEEeCCCCCCccCCh--hccccCcc
Q psy3781          77 RELNLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQPEK-----LVKMQKLTVLDLSNNNIRKIPY--ELGLAQQL  147 (183)
Q Consensus        77 ~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~~~-----~~~~~~L~~l~l~~n~l~~~~~--~~~~~~~L  147 (183)
                      ++|++++|++-..+  ...+.++.|..|+++.+.+.++..+..     ....++|++|++..|++.+++.  .+..+.++
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl  328 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL  328 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence            99999999887665  456678999999999999988764333     2446899999999999987654  36677888


Q ss_pred             cEEeccCCcCCCCcH
Q psy3781         148 HHLNLVGNCFKYPRQ  162 (183)
Q Consensus       148 ~~l~l~~n~~~~~~~  162 (183)
                      +.+.+..|+++.+..
T Consensus       329 k~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  329 KHLRITLNYLNKETD  343 (505)
T ss_pred             hhhhccccccccccc
Confidence            999988888876655

>PLN03210 Resistant to P

Probab=99.15  E-value=7.6e-10  Score=94.33  Aligned_cols=149  Identities=19%  Similarity=0.261  Sum_probs=102.6

Q ss_pred             CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCc-cccccCccccCCCCeEeCCCCC
Q psy3781           7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK-LETIDIDFNFGHLRELNLSSNK   85 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~~   85 (183)
                      +|+.|++.++.+..+|..+ ...+|+.|++.++.+..++..+..+++|+.++++++. +..+|....+++|++|++++|.
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS  668 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCC
Confidence            5778888888887777765 4678888888888888877777778888888887764 5555543367788888887764


Q ss_pred             -CCCcchhccCCCCCcEEEcCCCc-cccccCchhhhcCCCccEEeCCCCC-CccCChhccccCcccEEeccCCcCCCCcH
Q psy3781          86 -FQQIPKCIFHLDNLEILILNNND-IEEINQPEKLVKMQKLTVLDLSNNN-IRKIPYELGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus        86 -~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                       +..+|..+..+++|+.|++++|. +..+  +... ++++|+.|++++|. +..+|..   ..+|+.|++++|.+...+.
T Consensus       669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~L--p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        669 SLVELPSSIQYLNKLEDLDMSRCENLEIL--PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             CccccchhhhccCCCCEEeCCCCCCcCcc--CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccc
Confidence             45677777777888888888764 4444  3322 56777777777764 3344432   3456677777776655443

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.05  E-value=2.8e-10  Score=63.46  Aligned_cols=59  Identities=37%  Similarity=0.667  Sum_probs=39.5

Q ss_pred             CCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCcc
Q psy3781           6 AQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKL   64 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l   64 (183)
                      ++|+.|++++|.+..+++..+ .+++|+.+++++|+++.+++ .|.++++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456777777777777766554 56777777777777776654 356677777777776653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=2e-10  Score=64.05  Aligned_cols=58  Identities=41%  Similarity=0.586  Sum_probs=32.4

Q ss_pred             CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCc
Q psy3781          98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNC  156 (183)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~  156 (183)
                      +|+.|++++|.++.+. +..|.++++|+++++++|.++.++. .+.++++|+++++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIP-PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEEC-TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccC-HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555555555554 4455555555555555555555543 35555666666666554

...

>KOG1909|consensus

Probab=99.01  E-value=4.2e-11  Score=86.63  Aligned_cols=39  Identities=23%  Similarity=0.179  Sum_probs=18.7

Q ss_pred             CCCCccEEecCCCcce-ec----ccccccCCCccEEEcCCCcCC
Q psy3781           4 KEAQVEQADLSYNRLH-VV----NSKLFDITSIRELDLSHNLIQ   42 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~-~l----~~~~~~~~~l~~l~l~~~~l~   42 (183)
                      .++.|+.++|++|.+. .-    ...+..+..|++|++.+|.+.
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            4455555555555555 11    112223445555555555544

>KOG1909|consensus

Probab=99.00  E-value=8.8e-11  Score=84.97  Aligned_cols=140  Identities=22%  Similarity=0.199  Sum_probs=73.5

Q ss_pred             CCCccEEEcCCCcCC-CC----CccccCCCCCceEEcCCCccccccC--------------cc-ccCCCCeEeCCCCCCC
Q psy3781          28 ITSIRELDLSHNLIQ-NL----PPDLLNLRHLVYMNLENNKLETIDI--------------DF-NFGHLRELNLSSNKFQ   87 (183)
Q Consensus        28 ~~~l~~l~l~~~~l~-~l----~~~~~~~~~L~~L~l~~n~l~~~~~--------------~~-~~~~L~~L~l~~~~~~   87 (183)
                      +++|+.++|+.|.+. .-    ...+..+..|++|.+.+|.+.....              .+ .-++|+.+.+.+|++.
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            345555555555544 11    1123334555555555555542110              11 3345566666666555


Q ss_pred             C-----cchhccCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCc-----cCChhccccCcccEEeccC
Q psy3781          88 Q-----IPKCIFHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIR-----KIPYELGLAQQLHHLNLVG  154 (183)
Q Consensus        88 ~-----~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~-----~~~~~~~~~~~L~~l~l~~  154 (183)
                      .     +...+...+.|+.+.+..|.|...+.   ...+..++.|+.|++.+|.|+     .+...++.+++|+.+++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            2     22233334566666666666554331   244556677777777777766     2344456666677777777


Q ss_pred             CcCCCCcHHHhhh
Q psy3781         155 NCFKYPRQDILQK  167 (183)
Q Consensus       155 n~~~~~~~~~~~~  167 (183)
                      |.+...+...+.+
T Consensus       251 cll~~~Ga~a~~~  263 (382)
T KOG1909|consen  251 CLLENEGAIAFVD  263 (382)
T ss_pred             cccccccHHHHHH
Confidence            7666666555443

>KOG1644|consensus

Probab=98.98  E-value=1.4e-09  Score=73.39  Aligned_cols=125  Identities=28%  Similarity=0.293  Sum_probs=89.9

Q ss_pred             ccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccC-CCCCcEEEcCCCcc
Q psy3781          31 IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDI  109 (183)
Q Consensus        31 l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~l~l~~n~~  109 (183)
                      =+++++.+.++..+...-........+|+++|.+..++..-.++.|.+|.+++|+|+.+.+.+.. .+++..|.+.+|.+
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            45566777666544331112345677888888887766555778888888888888888766654 67788888888888


Q ss_pred             ccccCchhhhcCCCccEEeCCCCCCccCChh----ccccCcccEEeccCC
Q psy3781         110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYE----LGLAQQLHHLNLVGN  155 (183)
Q Consensus       110 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~L~~l~l~~n  155 (183)
                      ..++...-+..+++|++|.+-+|+++.-+..    +..+++++.||...-
T Consensus       101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8777667777888888888888888755432    677888888887753

>KOG4579|consensus

Probab=98.90  E-value=5.4e-11  Score=75.55  Aligned_cols=107  Identities=24%  Similarity=0.339  Sum_probs=51.1

Q ss_pred             cEEEcCCCcCCCCCcc---ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCC
Q psy3781          32 RELDLSHNLIQNLPPD---LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNN  106 (183)
Q Consensus        32 ~~l~l~~~~l~~l~~~---~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~  106 (183)
                      ..++++.|++-.+++.   +.....|+.+++++|.+.+.|..+  ..+..+.+++++|.++.+|..+..++.|+.++++.
T Consensus        30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF  109 (177)
T ss_pred             hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence            3445555555444433   222333444455555555554444  33344555555555555555444555555555555


Q ss_pred             CccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781         107 NDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE  140 (183)
Q Consensus       107 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  140 (183)
                      |.+...  +..+..+.++..|+..+|.+..++..
T Consensus       110 N~l~~~--p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  110 NPLNAE--PRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             Cccccc--hHHHHHHHhHHHhcCCCCccccCcHH
Confidence            555444  33333344555555555554444443

>KOG4579|consensus

Probab=98.89  E-value=2.1e-10  Score=72.91  Aligned_cols=116  Identities=26%  Similarity=0.328  Sum_probs=97.3

Q ss_pred             CceEEcCCCccccccCcc----ccCCCCeEeCCCCCCCCcchhccC-CCCCcEEEcCCCccccccCchhhhcCCCccEEe
Q psy3781          54 LVYMNLENNKLETIDIDF----NFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLD  128 (183)
Q Consensus        54 L~~L~l~~n~l~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  128 (183)
                      +..++++.|.+-.+++..    ....|+.+++++|.+..+|+.+.. .+....+++++|.++++  |..++.++.|+.++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv--PeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV--PEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc--hHHHhhhHHhhhcc
Confidence            556788888877666655    445677889999999999886654 67899999999999999  77799999999999


Q ss_pred             CCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhhhChHH
Q psy3781         129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPF  171 (183)
Q Consensus       129 l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  171 (183)
                      ++.|.+...|+.+..+.++..|+..+|....++-+.+......
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~a  149 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPA  149 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHH
Confidence            9999999999988889999999999999988888866655443

>PLN03150 hypothetical protein; Provisional

Probab=98.88  E-value=7.4e-09  Score=83.09  Aligned_cols=90  Identities=33%  Similarity=0.421  Sum_probs=56.2

Q ss_pred             CCeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEEecc
Q psy3781          76 LRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLV  153 (183)
Q Consensus        76 L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l~l~  153 (183)
                      ++.|++++|.+. .+|..+..+++|+.|++++|.+.+.. +..++.++.|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            455666666665 44555666666666666666666543 555666666666666666666 456666666666666666


Q ss_pred             CCcCCCCcHHHhh
Q psy3781         154 GNCFKYPRQDILQ  166 (183)
Q Consensus       154 ~n~~~~~~~~~~~  166 (183)
                      +|.+.+..+..+.
T Consensus       499 ~N~l~g~iP~~l~  511 (623)
T PLN03150        499 GNSLSGRVPAALG  511 (623)
T ss_pred             CCcccccCChHHh
Confidence            6666665555443

>KOG0531|consensus

Probab=98.87  E-value=2.7e-10  Score=87.30  Aligned_cols=127  Identities=31%  Similarity=0.404  Sum_probs=81.1

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK   85 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~   85 (183)
                      ..++.+.+..+.+..+...+..+.+++.+++.+|++..+...+..+++|++|++++|.|+++.....++.|+.|++.+|.
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL  151 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCc
Confidence            34444555555555544555566777777777777776655566677777777777777776665555557777777777


Q ss_pred             CCCcchhccCCCCCcEEEcCCCccccccCc-hhhhcCCCccEEeCCCCCCc
Q psy3781          86 FQQIPKCIFHLDNLEILILNNNDIEEINQP-EKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~  135 (183)
                      ++.+.. +..+..++.+++++|.+..+. . . ...+..++.+++.+|.+.
T Consensus       152 i~~~~~-~~~l~~L~~l~l~~n~i~~ie-~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  152 ISDISG-LESLKSLKLLDLSYNRIVDIE-NDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhccC-CccchhhhcccCCcchhhhhh-hhh-hhhccchHHHhccCCchh
Confidence            776632 333566777777777776663 2 1 455666666666666554

>KOG0531|consensus

Probab=98.86  E-value=3.2e-10  Score=86.85  Aligned_cols=159  Identities=31%  Similarity=0.334  Sum_probs=114.4

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL   81 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l   81 (183)
                      +..+.+++.+++.+|.|..+...+..+++|+++++++|.|+.+. .+..++.|+.|++.+|.+..+.....+..++.+++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL  169 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence            45678899999999999988776777899999999999999763 35556679999999999988776667888999999


Q ss_pred             CCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcC-------------------C--CccEEeCCCCCCccCCh
Q psy3781          82 SSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKM-------------------Q--KLTVLDLSNNNIRKIPY  139 (183)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-------------------~--~L~~l~l~~n~l~~~~~  139 (183)
                      ++|.+..+... ...+.+++.+.+.+|.+..+........+                   .  .|+.+++++|.+..++.
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~  249 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPE  249 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccc
Confidence            99999877552 34567788888888877654211111110                   1  15666667776666654


Q ss_pred             hccccCcccEEeccCCcCCCCc
Q psy3781         140 ELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       140 ~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      .+..+..+..+++.+|.+....
T Consensus       250 ~~~~~~~l~~l~~~~n~~~~~~  271 (414)
T KOG0531|consen  250 GLENLKNLPVLDLSSNRISNLE  271 (414)
T ss_pred             cccccccccccchhhccccccc
Confidence            5566666777777766554443

>PLN03150 hypothetical protein; Provisional

Probab=98.86  E-value=1.7e-08  Score=80.99  Aligned_cols=102  Identities=29%  Similarity=0.479  Sum_probs=47.1

Q ss_pred             CceEEcCCCccc-cccCcc-ccCCCCeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCC
Q psy3781          54 LVYMNLENNKLE-TIDIDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS  130 (183)
Q Consensus        54 L~~L~l~~n~l~-~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~  130 (183)
                      ++.|++++|.+. .++..+ .+.+|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.. +..++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECc
Confidence            444455555444 223233 4445555555555554 34444444555555555555554433 4445555555555555


Q ss_pred             CCCCc-cCChhcccc-CcccEEeccCCc
Q psy3781         131 NNNIR-KIPYELGLA-QQLHHLNLVGNC  156 (183)
Q Consensus       131 ~n~l~-~~~~~~~~~-~~L~~l~l~~n~  156 (183)
                      +|.++ .+|..+... .++..+++.+|+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            55544 444443321 233344444443

>KOG2982|consensus

Probab=98.80  E-value=2.7e-09  Score=76.26  Aligned_cols=155  Identities=21%  Similarity=0.239  Sum_probs=79.8

Q ss_pred             CCCccEEecCCCcce---ecccccccCCCccEEEcCCCcCCCCCccc-cCCCCCceEEcCCCccccc--cCcc-ccCCCC
Q psy3781           5 EAQVEQADLSYNRLH---VVNSKLFDITSIRELDLSHNLIQNLPPDL-LNLRHLVYMNLENNKLETI--DIDF-NFGHLR   77 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~---~l~~~~~~~~~l~~l~l~~~~l~~l~~~~-~~~~~L~~L~l~~n~l~~~--~~~~-~~~~L~   77 (183)
                      ++.++.+|+.+|.|+   ++...+.++|.++.|+++.|++..--..+ ....+|++|.+.++.+.+-  .... .++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            445556666666655   23333335666666666666555211112 1234455555555544321  1122 444444


Q ss_pred             eEeCCCCCCC---------------------------C---cchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEE
Q psy3781          78 ELNLSSNKFQ---------------------------Q---IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL  127 (183)
Q Consensus        78 ~L~l~~~~~~---------------------------~---~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l  127 (183)
                      +++++.|++.                           .   +-.-...++++..+.++.|++.+......+...+.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            4444444211                           0   000011246677777777777665434455556666677


Q ss_pred             eCCCCCCccCCh--hccccCcccEEeccCCcCCC
Q psy3781         128 DLSNNNIRKIPY--ELGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus       128 ~l~~n~l~~~~~--~~~~~~~L~~l~l~~n~~~~  159 (183)
                      +++.+++.+...  .+.+++.++.+.+.++++..
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            777777765432  26667777777777776543

>KOG1859|consensus

Probab=98.77  E-value=6.1e-11  Score=93.36  Aligned_cols=128  Identities=26%  Similarity=0.268  Sum_probs=87.1

Q ss_pred             CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCcc
Q psy3781          30 SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI  109 (183)
Q Consensus        30 ~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~  109 (183)
                      +|...++++|.+.....+++-++.++.|+++.|+++++.....+++|++||+++|.+..+|..-..-..|..|.+++|.+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL  244 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence            56667777777776666666677788888888877777632277778888888887777655322233477777777777


Q ss_pred             ccccCchhhhcCCCccEEeCCCCCCccCCh--hccccCcccEEeccCCcCCCC
Q psy3781         110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPY--ELGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus       110 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~--~~~~~~~L~~l~l~~n~~~~~  160 (183)
                      +.+   ..+.++.+|+.||++.|.+.+...  .++.+..|+.|.+.||++-.-
T Consensus       245 ~tL---~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  245 TTL---RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             Hhh---hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            765   455667777777888777664432  255666777778877776443

>KOG1859|consensus

Probab=98.76  E-value=7.2e-11  Score=92.96  Aligned_cols=152  Identities=24%  Similarity=0.307  Sum_probs=97.9

Q ss_pred             CCCCccEEecCCCcceecccccccC-CCccEEEcCCCcCCCCC-------ccccC---CCCCceEEcCCCccccccCcc-
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLP-------PDLLN---LRHLVYMNLENNKLETIDIDF-   71 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~-~~l~~l~l~~~~l~~l~-------~~~~~---~~~L~~L~l~~n~l~~~~~~~-   71 (183)
                      .+.+|+.|.+.++.+... .++..+ ..|+.| +-.+.++.+.       ..+.+   ...|.+.++++|.+..+...+ 
T Consensus       107 pF~sLr~LElrg~~L~~~-~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq  184 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCDLSTA-KGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ  184 (1096)
T ss_pred             cccceeeEEecCcchhhh-hhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH
Confidence            456788888888877742 112111 233333 2222222111       11221   336777788888887777777 


Q ss_pred             ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEe
Q psy3781          72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLN  151 (183)
Q Consensus        72 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~  151 (183)
                      -++.+++|+++.|+++.+. .+..++.|++|+++.|.++.++ -....+++ |..|.+++|.++.+- .+.++.+|+.||
T Consensus       185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp-~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~LD  260 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVP-QLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGLD  260 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcccc-ccchhhhh-heeeeecccHHHhhh-hHHhhhhhhccc
Confidence            6778888888888888775 5667788888888888888774 23333344 888888888887763 367788888888


Q ss_pred             ccCCcCCCCc
Q psy3781         152 LVGNCFKYPR  161 (183)
Q Consensus       152 l~~n~~~~~~  161 (183)
                      +++|.+.+-.
T Consensus       261 lsyNll~~hs  270 (1096)
T KOG1859|consen  261 LSYNLLSEHS  270 (1096)
T ss_pred             hhHhhhhcch
Confidence            8888765543

>KOG4658|consensus

Probab=98.70  E-value=5.7e-09  Score=86.07  Aligned_cols=159  Identities=23%  Similarity=0.341  Sum_probs=77.1

Q ss_pred             CCccEEecCCCc--ceecccccc-cCCCccEEEcCCC-cCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEe
Q psy3781           6 AQVEQADLSYNR--LHVVNSKLF-DITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELN   80 (183)
Q Consensus         6 ~~l~~l~l~~~~--i~~l~~~~~-~~~~l~~l~l~~~-~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~   80 (183)
                      +.+++|-+..+.  +..++..++ .++.|+.|++++| .+..+|..++.+-+|++|+++++.+..+|.++ .+..|.+|+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence            345555555543  344444433 3555555555554 34455555555555555555555555555555 555555555


Q ss_pred             CCCCCCC-CcchhccCCCCCcEEEcCCCccc-cccCchhhhcCCCccE--------------------------EeCCCC
Q psy3781          81 LSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQKLTV--------------------------LDLSNN  132 (183)
Q Consensus        81 l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~L~~--------------------------l~l~~n  132 (183)
                      +..+... .++.....+++|++|.+...... +......+..+..|+.                          +.+.++
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~  704 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC  704 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence            5554332 22222223555555554333211 0000111122222222                          222222


Q ss_pred             CCccCChhccccCcccEEeccCCcCCCCcHHH
Q psy3781         133 NIRKIPYELGLAQQLHHLNLVGNCFKYPRQDI  164 (183)
Q Consensus       133 ~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  164 (183)
                      .....+..+..+.+|+.|.+.++.+.......
T Consensus       705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~  736 (889)
T KOG4658|consen  705 SKRTLISSLGSLGNLEELSILDCGISEIVIEW  736 (889)
T ss_pred             ccceeecccccccCcceEEEEcCCCchhhccc
Confidence            33344455677888999999988876554433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.61  E-value=3.8e-08  Score=50.74  Aligned_cols=36  Identities=44%  Similarity=0.547  Sum_probs=16.2

Q ss_pred             CccEEeCCCCCCccCChhccccCcccEEeccCCcCC
Q psy3781         123 KLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK  158 (183)
Q Consensus       123 ~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~  158 (183)
                      +|++|++++|.|+++|..++.+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            344444444444444444444444444444444444

...

>KOG1644|consensus

Probab=98.57  E-value=1.7e-07  Score=63.53  Aligned_cols=102  Identities=28%  Similarity=0.386  Sum_probs=64.0

Q ss_pred             CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch--hccCCCCCcEEEcC
Q psy3781          30 SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK--CIFHLDNLEILILN  105 (183)
Q Consensus        30 ~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~  105 (183)
                      ....++|++|.+..+ +.|..++.|.+|.+++|.|+.+.+.+  .++.+..|.+.+|++..+..  .+..+++|+.|.+-
T Consensus        43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            455667777766654 34566677777777777777777766  55667777777777765533  34456677777777


Q ss_pred             CCccccccC--chhhhcCCCccEEeCCCC
Q psy3781         106 NNDIEEINQ--PEKLVKMQKLTVLDLSNN  132 (183)
Q Consensus       106 ~n~~~~~~~--~~~~~~~~~L~~l~l~~n  132 (183)
                      +|+++....  .-.+..+++|++||+.+-
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhh
Confidence            777654321  122334567777776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.53  E-value=1.2e-07  Score=48.85  Aligned_cols=35  Identities=31%  Similarity=0.500  Sum_probs=14.4

Q ss_pred             ccEEecCCCcceecccccccCCCccEEEcCCCcCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQ   42 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~   42 (183)
                      |++|++++|.|+++++.+..+++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            44444444444444443444444444444444443

...

>KOG3665|consensus

Probab=98.45  E-value=1e-07  Score=77.04  Aligned_cols=138  Identities=21%  Similarity=0.235  Sum_probs=92.7

Q ss_pred             CCccEEEcCCCcCC---CCCccccCCCCCceEEcCCCcccccc--Ccc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEE
Q psy3781          29 TSIRELDLSHNLIQ---NLPPDLLNLRHLVYMNLENNKLETID--IDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEIL  102 (183)
Q Consensus        29 ~~l~~l~l~~~~l~---~l~~~~~~~~~L~~L~l~~n~l~~~~--~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l  102 (183)
                      .+|++|+++|...-   +.......+|.|+.|.+++-.+..-.  ... ++++|..||+++++++.+ .++.++++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            36788888775322   11111234788888888887665322  222 778888888888888877 667778888888


Q ss_pred             EcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-------hccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         103 ILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-------ELGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       103 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-------~~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      .+.+-.+..-.....+.++++|+.||++......-+.       .-..+|.|+.||.+++.+.+...+.+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            8877777653335667778888888888876553331       1245788888888887776666555444

>KOG2120|consensus

Probab=98.43  E-value=5.7e-09  Score=74.68  Aligned_cols=155  Identities=20%  Similarity=0.139  Sum_probs=97.8

Q ss_pred             CCCCCCccEEecCCCcce-ecccccccCCCccEEEcCCC-cCCCCC--ccccCCCCCceEEcCCCccccc--cCcc--cc
Q psy3781           2 IAKEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHN-LIQNLP--PDLLNLRHLVYMNLENNKLETI--DIDF--NF   73 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~-~l~~l~--~~~~~~~~L~~L~l~~n~l~~~--~~~~--~~   73 (183)
                      +..|.+|+.+.++++.+. .+...+.+..+|+.+++++| .+++-.  -.+..++.|..|.+++|.+..-  ....  --
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            345667777777777776 45555666778888888887 455322  2255677888888888875521  1111  33


Q ss_pred             CCCCeEeCCCCCCC----CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc--cCChhccccCcc
Q psy3781          74 GHLRELNLSSNKFQ----QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR--KIPYELGLAQQL  147 (183)
Q Consensus        74 ~~L~~L~l~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--~~~~~~~~~~~L  147 (183)
                      .+++.|+++|+.-.    ++.--...++++..|+++++.--.......+...+.|+++.++.|..-  +.--.+...++|
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence            56777788776322    333334467888888888775332232466667788888888877521  111125677888


Q ss_pred             cEEeccCCc
Q psy3781         148 HHLNLVGNC  156 (183)
Q Consensus       148 ~~l~l~~n~  156 (183)
                      .+|++.+.-
T Consensus       366 ~yLdv~g~v  374 (419)
T KOG2120|consen  366 VYLDVFGCV  374 (419)
T ss_pred             EEEEecccc
Confidence            889888753

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.36  E-value=2.3e-07  Score=65.81  Aligned_cols=139  Identities=22%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             cCCCccEEEcCCCcCC-CCC----ccccCCCCCceEEcCCCccccccCc--------------c-ccCCCCeEeCCCCCC
Q psy3781          27 DITSIRELDLSHNLIQ-NLP----PDLLNLRHLVYMNLENNKLETIDID--------------F-NFGHLRELNLSSNKF   86 (183)
Q Consensus        27 ~~~~l~~l~l~~~~l~-~l~----~~~~~~~~L~~L~l~~n~l~~~~~~--------------~-~~~~L~~L~l~~~~~   86 (183)
                      .|++++.++++.|.+. ..|    +.+...+.+.+|.+++|.+..+..+              + .-+.|+.+.+.+|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            3455555555555544 121    2234445555555555554432211              1 334555555555555


Q ss_pred             CCcch-----hccCCCCCcEEEcCCCccccccCc----hhhhcCCCccEEeCCCCCCcc-----CChhccccCcccEEec
Q psy3781          87 QQIPK-----CIFHLDNLEILILNNNDIEEINQP----EKLVKMQKLTVLDLSNNNIRK-----IPYELGLAQQLHHLNL  152 (183)
Q Consensus        87 ~~~~~-----~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~~L~~l~l~~n~l~~-----~~~~~~~~~~L~~l~l  152 (183)
                      ...+.     .+..-..++.+.+..|.|+..+..    ..+..+++|+.|++..|.++-     +...+..++.|+.|.+
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence            43221     111123455555555555443211    112234566666666666651     1222344445666666


Q ss_pred             cCCcCCCCcHHHh
Q psy3781         153 VGNCFKYPRQDIL  165 (183)
Q Consensus       153 ~~n~~~~~~~~~~  165 (183)
                      .+|-++..+...+
T Consensus       250 nDClls~~G~~~v  262 (388)
T COG5238         250 NDCLLSNEGVKSV  262 (388)
T ss_pred             cchhhccccHHHH
Confidence            6666655554433

>KOG4658|consensus

Probab=98.33  E-value=4.1e-07  Score=75.39  Aligned_cols=145  Identities=24%  Similarity=0.340  Sum_probs=93.0

Q ss_pred             CccEEecCCCcceecccccccCCCccEEEcCCCc--CCCCCcc-ccCCCCCceEEcCCCc-cccccCcc-ccCCCCeEeC
Q psy3781           7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNL--IQNLPPD-LLNLRHLVYMNLENNK-LETIDIDF-NFGHLRELNL   81 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~--l~~l~~~-~~~~~~L~~L~l~~n~-l~~~~~~~-~~~~L~~L~l   81 (183)
                      .++.+.+.++.+..++... .+++++.|-+.++.  +..++.. |..++.|++||+++|. +..+|... .+-+|++|++
T Consensus       524 ~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             heeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            3455555566655554433 24467777777775  4555554 5558888888888764 56777777 6778888888


Q ss_pred             CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc---cCChhccccCcccEEecc
Q psy3781          82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR---KIPYELGLAQQLHHLNLV  153 (183)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~---~~~~~~~~~~~L~~l~l~  153 (183)
                      +++.+..+|.++..+..|.+|++..+...... +.....+++|++|.+......   .....+..+.+|+.+...
T Consensus       603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            88888888888888888888888766544332 455555778888777665422   112223445555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.31  E-value=5.7e-06  Score=62.70  Aligned_cols=72  Identities=10%  Similarity=0.183  Sum_probs=49.1

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCC-cCCCCCccccCCCCCceEEcCCC-ccccccCccccCCCCeEeC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENN-KLETIDIDFNFGHLRELNL   81 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~-~l~~l~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l   81 (183)
                      .+.+++.|++++|.+..+|. +  -.+|+.|.+++| .++.+|..+  ..+|++|.+++| .+..+|.     +|+.|++
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-----sLe~L~L  119 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-----SVRSLEI  119 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----ccceEEe
Confidence            35778899999988888872 2  236888888885 556666544  257888888887 5555443     3566666


Q ss_pred             CCCC
Q psy3781          82 SSNK   85 (183)
Q Consensus        82 ~~~~   85 (183)
                      ..+.
T Consensus       120 ~~n~  123 (426)
T PRK15386        120 KGSA  123 (426)
T ss_pred             CCCC
Confidence            5554

>KOG3665|consensus

Probab=98.22  E-value=8.6e-07  Score=71.78  Aligned_cols=129  Identities=17%  Similarity=0.270  Sum_probs=93.0

Q ss_pred             CCccEEecCCCcce--ecccccc-cCCCccEEEcCCCcCC--CCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeE
Q psy3781           6 AQVEQADLSYNRLH--VVNSKLF-DITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLREL   79 (183)
Q Consensus         6 ~~l~~l~l~~~~i~--~l~~~~~-~~~~l~~l~l~~~~l~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L   79 (183)
                      .+|+.|++++...-  ..+..++ -+|.|+.|.+.+-.+.  ++.....++++|..|||++++++.+ .+. .+.+|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            46788888886332  3444555 4899999999997765  3333345689999999999999888 344 88888888


Q ss_pred             eCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccC-----chhhhcCCCccEEeCCCCCCc
Q psy3781          80 NLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQ-----PEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        80 ~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~-----~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      .+.+-.+....  ..++.+.+|+.||++.........     .+.-..+|.|+.||.+++.++
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            88777666432  367789999999998876544310     122334789999999998876

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.20  E-value=1.4e-05  Score=51.16  Aligned_cols=96  Identities=19%  Similarity=0.333  Sum_probs=33.3

Q ss_pred             CccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchh-ccCCCCCcEEEcC
Q psy3781          30 SIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKC-IFHLDNLEILILN  105 (183)
Q Consensus        30 ~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~  105 (183)
                      +++.+.+.. .+..++.. |..+.+++.+.+.++ +..++...  .+.+++.+.+.. .+..++.. +..+++++.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            444444442 23333332 333334555554442 44444433  333455555543 33333332 2235555555554


Q ss_pred             CCccccccCchhhhcCCCccEEeCCC
Q psy3781         106 NNDIEEINQPEKLVKMQKLTVLDLSN  131 (183)
Q Consensus       106 ~n~~~~~~~~~~~~~~~~L~~l~l~~  131 (183)
                      .+ +..+. ...+.++ .++.+.+..
T Consensus        90 ~~-~~~i~-~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   90 SN-ITEIG-SSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT--BEEH-TTTTTT--T--EEE-TT
T ss_pred             cc-ccEEc-hhhhcCC-CceEEEECC
Confidence            43 43333 3444444 555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.20  E-value=9.4e-07  Score=62.84  Aligned_cols=166  Identities=20%  Similarity=0.256  Sum_probs=98.7

Q ss_pred             CCCccEEecCCCcce-----ecccccccCCCccEEEcCCCcCC----CCCc-------cccCCCCCceEEcCCCccccc-
Q psy3781           5 EAQVEQADLSYNRLH-----VVNSKLFDITSIRELDLSHNLIQ----NLPP-------DLLNLRHLVYMNLENNKLETI-   67 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~-----~l~~~~~~~~~l~~l~l~~~~l~----~l~~-------~~~~~~~L~~L~l~~n~l~~~-   67 (183)
                      +..+..+++++|.|.     .+...+.+-.+|+..+++..-..    .+++       .+..+|+++.+++++|-+..- 
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            556777788888777     33444445567777777665333    2222       244577788888888776622 


Q ss_pred             cCc----c-ccCCCCeEeCCCCCCCCcch--------------hccCCCCCcEEEcCCCccccccCchhhh----cCCCc
Q psy3781          68 DID----F-NFGHLRELNLSSNKFQQIPK--------------CIFHLDNLEILILNNNDIEEINQPEKLV----KMQKL  124 (183)
Q Consensus        68 ~~~----~-~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~L~~l~l~~n~~~~~~~~~~~~----~~~~L  124 (183)
                      +..    + ....+.+|.+++|.+..+..              ....-|.|+.+..++|++..-+ ...+.    .-..|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs-~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS-KELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc-HHHHHHHHHhhcCc
Confidence            221    1 55667778888777663211              1223466777777777776543 22221    22367


Q ss_pred             cEEeCCCCCCc--cCC----hhccccCcccEEeccCCcCCCCcHHHhhhChHH
Q psy3781         125 TVLDLSNNNIR--KIP----YELGLAQQLHHLNLVGNCFKYPRQDILQKGTPF  171 (183)
Q Consensus       125 ~~l~l~~n~l~--~~~----~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  171 (183)
                      +.+.+..|.|.  .+.    ..+..+.+|+.|++.+|-++-.+..++....+.
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~  240 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE  240 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence            77777777665  111    114566777888888887777777776665444

>KOG2120|consensus

Probab=98.18  E-value=2.5e-08  Score=71.44  Aligned_cols=150  Identities=20%  Similarity=0.236  Sum_probs=93.9

Q ss_pred             CccEEecCCCcce--ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCc-cccccCcc---ccCCCCeE
Q psy3781           7 QVEQADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNK-LETIDIDF---NFGHLREL   79 (183)
Q Consensus         7 ~l~~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~---~~~~L~~L   79 (183)
                      .++.+|+++..|+  .+...+.++.+|+.+.+.++++. .+...+....+|+.++++.++ ++......   ++..|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4666777777766  45555566777777777777666 333345566778888887765 44333322   66778888


Q ss_pred             eCCCCCCCC--cchhccC-CCCCcEEEcCCCcc--ccccCchhhhcCCCccEEeCCCCC-Cc-cCChhccccCcccEEec
Q psy3781          80 NLSSNKFQQ--IPKCIFH-LDNLEILILNNNDI--EEINQPEKLVKMQKLTVLDLSNNN-IR-KIPYELGLAQQLHHLNL  152 (183)
Q Consensus        80 ~l~~~~~~~--~~~~~~~-~~~L~~l~l~~n~~--~~~~~~~~~~~~~~L~~l~l~~n~-l~-~~~~~~~~~~~L~~l~l  152 (183)
                      +++||.+..  +--.+.+ -+++..|+++++.-  ..-........++++.+||++++. ++ +.-..+..++.|+++.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            888886651  1111222 35677788877742  121214555678889999988874 44 22233567778888888


Q ss_pred             cCCc
Q psy3781         153 VGNC  156 (183)
Q Consensus       153 ~~n~  156 (183)
                      +.+.
T Consensus       346 sRCY  349 (419)
T KOG2120|consen  346 SRCY  349 (419)
T ss_pred             hhhc
Confidence            8773

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.06  E-value=2.5e-05  Score=49.99  Aligned_cols=117  Identities=19%  Similarity=0.357  Sum_probs=43.2

Q ss_pred             CCCCCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR   77 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~   77 (183)
                      |..+.+|+.+.+.. .+..+....+ .+.+++.+.+..+ +..++.. |.....++.+.+.+ .+..++...  .+..++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            45555666666553 4555555544 3446666666553 4544443 33444566666644 444444433  355666


Q ss_pred             eEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCc
Q psy3781          78 ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL  124 (183)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L  124 (183)
                      .+.+..+ +..++...+.-..++.+.+.. .+..+. ...|.++++|
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~~i~-~~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNCNLKEINIPS-NITKIE-ENAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT-T--EEE-TT-B-SS-----GGG-----
T ss_pred             ccccCcc-ccEEchhhhcCCCceEEEECC-CccEEC-CccccccccC
Confidence            6666543 444443322222555555543 333333 3444444443

>KOG2982|consensus

Probab=98.05  E-value=6.9e-07  Score=64.26  Aligned_cols=83  Identities=28%  Similarity=0.369  Sum_probs=59.8

Q ss_pred             CCCccEEEcCCCcCC---CCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCC--CcchhccCCCCCc
Q psy3781          28 ITSIRELDLSHNLIQ---NLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQ--QIPKCIFHLDNLE  100 (183)
Q Consensus        28 ~~~l~~l~l~~~~l~---~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~  100 (183)
                      ...++++++.+|.++   ++...+..+|.+++|.++.|++...-...  ...+|+.|.+++..+.  .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            567888899999887   45555677899999999999877433322  5668888888888766  3334455677788


Q ss_pred             EEEcCCCccc
Q psy3781         101 ILILNNNDIE  110 (183)
Q Consensus       101 ~l~l~~n~~~  110 (183)
                      .+.++.|..+
T Consensus       150 elHmS~N~~r  159 (418)
T KOG2982|consen  150 ELHMSDNSLR  159 (418)
T ss_pred             hhhhccchhh
Confidence            8888887443

>KOG2123|consensus

Probab=97.89  E-value=3.1e-07  Score=65.37  Aligned_cols=99  Identities=25%  Similarity=0.248  Sum_probs=63.6

Q ss_pred             CCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCC
Q psy3781          52 RHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN  131 (183)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~  131 (183)
                      .+.+.|.+.+|.+.++..-..++.|+.|.++-|.++.+.+ +..+.+|+.|++..|.|.++.....+.++++|+.|++..
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            4456666777777666544467777777777777777643 445677777777777777765445566777777777777


Q ss_pred             CCCcc--CCh----hccccCcccEEe
Q psy3781         132 NNIRK--IPY----ELGLAQQLHHLN  151 (183)
Q Consensus       132 n~l~~--~~~----~~~~~~~L~~l~  151 (183)
                      |.-..  -+.    .+..+++|+.||
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            75441  111    144556666554

>KOG2739|consensus

Probab=97.78  E-value=1.7e-05  Score=55.92  Aligned_cols=39  Identities=31%  Similarity=0.504  Sum_probs=16.4

Q ss_pred             CCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781          97 DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        97 ~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      ++|+++++++|.+..+.-......+++|..|++..|..+
T Consensus        91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            444444444444443321223333344444444444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00035  Score=53.24  Aligned_cols=117  Identities=21%  Similarity=0.300  Sum_probs=73.9

Q ss_pred             cCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCc-cccccCccccCCCCeEeCCCC-CCCCcchhccCCCCCcEEEc
Q psy3781          27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNK-LETIDIDFNFGHLRELNLSSN-KFQQIPKCIFHLDNLEILIL  104 (183)
Q Consensus        27 ~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~l~l  104 (183)
                      .+.+++.|++++|.++.+|. +  .++|+.|.+++|. ++.++..+ ..+|++|.+++| .+..+|.      +|+.|++
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L  119 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE------SVRSLEI  119 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc------ccceEEe
Confidence            46889999999999998872 2  3469999998854 55555433 457999999988 6665554      3555555


Q ss_pred             CCCcccccc-Cchhhhc------------------CCCccEEeCCCCCCccCChhccccCcccEEeccCC
Q psy3781         105 NNNDIEEIN-QPEKLVK------------------MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN  155 (183)
Q Consensus       105 ~~n~~~~~~-~~~~~~~------------------~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n  155 (183)
                      ..+....+. .|..+..                  .++|++|++++|....+|..  -..+|+.|+++.+
T Consensus       120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~--LP~SLk~L~ls~n  187 (426)
T PRK15386        120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK--LPESLQSITLHIE  187 (426)
T ss_pred             CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccc--ccccCcEEEeccc
Confidence            544322211 0221111                  13677777777765555532  3557888887765

>KOG2739|consensus

Probab=97.22  E-value=0.00033  Score=49.62  Aligned_cols=87  Identities=23%  Similarity=0.238  Sum_probs=60.8

Q ss_pred             ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCcccccc-CchhhhcCCCccEEeCCCCCCccCC--hhccccCccc
Q psy3781          72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEIN-QPEKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLH  148 (183)
Q Consensus        72 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~~L~~l~l~~n~l~~~~--~~~~~~~~L~  148 (183)
                      ....++.+.+.+..++.+ ..+..+++|+.|.++.|...... +......+++|+++++++|.+..+.  +.+..+.+|.
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            344555555666666655 23446789999999999544322 2455556799999999999988542  2367788899


Q ss_pred             EEeccCCcCCC
Q psy3781         149 HLNLVGNCFKY  159 (183)
Q Consensus       149 ~l~l~~n~~~~  159 (183)
                      .|++.+|..+.
T Consensus       120 ~Ldl~n~~~~~  130 (260)
T KOG2739|consen  120 SLDLFNCSVTN  130 (260)
T ss_pred             hhhcccCCccc
Confidence            99999987766

>KOG2123|consensus

Probab=96.95  E-value=6.3e-05  Score=53.97  Aligned_cols=87  Identities=23%  Similarity=0.192  Sum_probs=70.3

Q ss_pred             cCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh--ccccCcccEE
Q psy3781          73 FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE--LGLAQQLHHL  150 (183)
Q Consensus        73 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~--~~~~~~L~~l  150 (183)
                      +.+.+.|++-+|.++.+.- ...|+.|+.|.++-|.|+.+   ..+..|++|+.|++..|.|.++.+.  +.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            4456778888888887733 44689999999999999886   5678899999999999999988654  7899999999


Q ss_pred             eccCCcCCCCcHH
Q psy3781         151 NLVGNCFKYPRQD  163 (183)
Q Consensus       151 ~l~~n~~~~~~~~  163 (183)
                      -+..|+=-+....
T Consensus        94 WL~ENPCc~~ag~  106 (388)
T KOG2123|consen   94 WLDENPCCGEAGQ  106 (388)
T ss_pred             hhccCCcccccch
Confidence            9999876555443

>KOG4308|consensus

Probab=96.74  E-value=6.7e-06  Score=63.99  Aligned_cols=165  Identities=24%  Similarity=0.249  Sum_probs=79.8

Q ss_pred             CCCCCccEEecCCCcce-----ecccccccC-CCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCcccccc---
Q psy3781           3 AKEAQVEQADLSYNRLH-----VVNSKLFDI-TSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETID---   68 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~-----~l~~~~~~~-~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~~~~---   68 (183)
                      ..+..++.|++++|.+.     .+...+... ..++.+.+..|.++.     +...+.....++.++++.|.+....   
T Consensus       112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~  191 (478)
T KOG4308|consen  112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV  191 (478)
T ss_pred             cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence            33445555666665555     112222222 344445555555541     2222333455666666666553111   


Q ss_pred             --Cc----c-ccCCCCeEeCCCCCCCC-----cchhccCCCC-CcEEEcCCCccccccCc---hhhhcC-CCccEEeCCC
Q psy3781          69 --ID----F-NFGHLRELNLSSNKFQQ-----IPKCIFHLDN-LEILILNNNDIEEINQP---EKLVKM-QKLTVLDLSN  131 (183)
Q Consensus        69 --~~----~-~~~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~l~l~~n~~~~~~~~---~~~~~~-~~L~~l~l~~  131 (183)
                        ..    + ...+++++.+++|.++.     +...+...+. +..+++..|.+.+.+..   ..+..+ ..++.+++..
T Consensus       192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~  271 (478)
T KOG4308|consen  192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR  271 (478)
T ss_pred             HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence              11    1 24455666666666551     1112222233 44466666666554311   222222 3456677777


Q ss_pred             CCCc-----cCChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         132 NNIR-----KIPYELGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       132 n~l~-----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      |.++     .+.+.+..++.++.+.+..|++.........+
T Consensus       272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~  312 (478)
T KOG4308|consen  272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLE  312 (478)
T ss_pred             CCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHH
Confidence            7666     23444556666777777777766665554433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.72  E-value=0.00067  Score=29.16  Aligned_cols=15  Identities=47%  Similarity=0.419  Sum_probs=6.1

Q ss_pred             cEEecCCCcceeccc
Q psy3781           9 EQADLSYNRLHVVNS   23 (183)
Q Consensus         9 ~~l~l~~~~i~~l~~   23 (183)
                      ++|++++|.++.+|+
T Consensus         3 ~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    3 EYLDLSGNNLTSIPS   17 (22)
T ss_dssp             SEEEETSSEESEEGT
T ss_pred             cEEECCCCcCEeCCh
Confidence            344444444443333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.47  E-value=0.0021  Score=27.55  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=17.9

Q ss_pred             CccEEEcCCCcCCCCCccccC
Q psy3781          30 SIRELDLSHNLIQNLPPDLLN   50 (183)
Q Consensus        30 ~l~~l~l~~~~l~~l~~~~~~   50 (183)
                      +|++|++++|+++.+|+.|.+
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            589999999999999887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.07  E-value=0.0036  Score=25.02  Aligned_cols=12  Identities=58%  Similarity=0.811  Sum_probs=3.5

Q ss_pred             ccEEeCCCCCCc
Q psy3781         124 LTVLDLSNNNIR  135 (183)
Q Consensus       124 L~~l~l~~n~l~  135 (183)
                      |+.|++++|.++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            333444444333

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.52  E-value=0.011  Score=26.30  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=11.7

Q ss_pred             CCccEEecCCCcceecccccc
Q psy3781           6 AQVEQADLSYNRLHVVNSKLF   26 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~   26 (183)
                      ++|+.|++++|.+..+|++++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455556666666655555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.52  E-value=0.011  Score=26.30  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=11.7

Q ss_pred             CCccEEecCCCcceecccccc
Q psy3781           6 AQVEQADLSYNRLHVVNSKLF   26 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~   26 (183)
                      ++|+.|++++|.+..+|++++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455556666666655555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.44  E-value=0.018  Score=25.56  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=12.5

Q ss_pred             CcccEEeccCCcCCCCcHHHhh
Q psy3781         145 QQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       145 ~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                      ++|+.|++++|.+...+..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            3455666666666666555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.44  E-value=0.018  Score=25.56  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=12.5

Q ss_pred             CcccEEeccCCcCCCCcHHHhh
Q psy3781         145 QQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       145 ~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                      ++|+.|++++|.+...+..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            3455666666666666555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.70  E-value=0.0091  Score=26.05  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=13.3

Q ss_pred             cCcccEEeccCCcCCCCcHHHhh
Q psy3781         144 AQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       144 ~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                      +++|+.|++++|.|++.+...+.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            35677777777777666655543

...

>KOG4308|consensus

Probab=94.60  E-value=0.00033  Score=54.78  Aligned_cols=164  Identities=24%  Similarity=0.239  Sum_probs=107.6

Q ss_pred             ccEEecCCCcce-----ecccccccCCCccEEEcCCCcCCC-----CCccccCC-CCCceEEcCCCccccccCc-----c
Q psy3781           8 VEQADLSYNRLH-----VVNSKLFDITSIRELDLSHNLIQN-----LPPDLLNL-RHLVYMNLENNKLETIDID-----F   71 (183)
Q Consensus         8 l~~l~l~~~~i~-----~l~~~~~~~~~l~~l~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~n~l~~~~~~-----~   71 (183)
                      +..+++.+|.+.     .+...+...+.+..+++++|.+..     +...+... +.+++|++..|.++.....     +
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            566777777766     334444567788999999998872     11222222 4677888888887744332     2


Q ss_pred             -ccCCCCeEeCCCCCCC-----Ccchhc----cCCCCCcEEEcCCCccccccC---chhhhcCCC-ccEEeCCCCCCccC
Q psy3781          72 -NFGHLRELNLSSNKFQ-----QIPKCI----FHLDNLEILILNNNDIEEINQ---PEKLVKMQK-LTVLDLSNNNIRKI  137 (183)
Q Consensus        72 -~~~~L~~L~l~~~~~~-----~~~~~~----~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~-L~~l~l~~n~l~~~  137 (183)
                       ....++.++++.|.+.     .++..+    ....+++++.+.+|.++....   ...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence             4567888888888774     122222    246778889999988875431   122223333 55688888877633


Q ss_pred             -----Chhcccc-CcccEEeccCCcCCCCcHHHhhhChHH
Q psy3781         138 -----PYELGLA-QQLHHLNLVGNCFKYPRQDILQKGTPF  171 (183)
Q Consensus       138 -----~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~~  171 (183)
                           .+.+..+ ..++.+++..|.+...+...+.+....
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~  288 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVS  288 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhh
Confidence                 3445566 678999999999999998887776443

>KOG1947|consensus

Probab=94.49  E-value=0.01  Score=46.41  Aligned_cols=61  Identities=26%  Similarity=0.285  Sum_probs=27.3

Q ss_pred             cCCCCeEeCCCCC-CCCcc-hhcc-CCCCCcEEEcCCCc-cccccCchhhhcCCCccEEeCCCCC
Q psy3781          73 FGHLRELNLSSNK-FQQIP-KCIF-HLDNLEILILNNND-IEEINQPEKLVKMQKLTVLDLSNNN  133 (183)
Q Consensus        73 ~~~L~~L~l~~~~-~~~~~-~~~~-~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~  133 (183)
                      +.++++++++++. ++... ..+. .+++|+.|.+.++. +++.+.......++.|+.++++++.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            3455555555554 33211 1111 14455555555444 4444423333345555555555543

>KOG4341|consensus

Probab=93.89  E-value=0.016  Score=44.13  Aligned_cols=147  Identities=16%  Similarity=0.187  Sum_probs=88.8

Q ss_pred             CCccEEecCCC-ccee--cccccccCCCccEEEcCCCcCCCCCcc-----ccCCCCCceEEcCCCc-cccccCc--c-cc
Q psy3781           6 AQVEQADLSYN-RLHV--VNSKLFDITSIRELDLSHNLIQNLPPD-----LLNLRHLVYMNLENNK-LETIDID--F-NF   73 (183)
Q Consensus         6 ~~l~~l~l~~~-~i~~--l~~~~~~~~~l~~l~l~~~~l~~l~~~-----~~~~~~L~~L~l~~n~-l~~~~~~--~-~~   73 (183)
                      ..+..+++.+| .+++  +......+..++.+..+++..  +++.     ..+.++|+.+.+.+|+ +++....  . .+
T Consensus       268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~  345 (483)
T KOG4341|consen  268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC  345 (483)
T ss_pred             hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence            33445555454 3442  222222466778887777743  2221     3356788999988886 4433222  1 67


Q ss_pred             CCCCeEeCCCCCCCC---cchhccCCCCCcEEEcCCCcc-ccccCchhh----hcCCCccEEeCCCCCCc--cCChhccc
Q psy3781          74 GHLRELNLSSNKFQQ---IPKCIFHLDNLEILILNNNDI-EEINQPEKL----VKMQKLTVLDLSNNNIR--KIPYELGL  143 (183)
Q Consensus        74 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~----~~~~~L~~l~l~~n~l~--~~~~~~~~  143 (183)
                      +.|+.+++.++....   +..--.+++.|+.+.++++.. ++.+ ...+    .+...++.+-++++..+  .....+..
T Consensus       346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g-i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~  424 (483)
T KOG4341|consen  346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG-IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI  424 (483)
T ss_pred             hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh-hhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence            788888888876552   333333578888888887754 3332 1222    23456888888888755  34455778


Q ss_pred             cCcccEEeccCC
Q psy3781         144 AQQLHHLNLVGN  155 (183)
Q Consensus       144 ~~~L~~l~l~~n  155 (183)
                      +++|+.+++-++
T Consensus       425 c~~Leri~l~~~  436 (483)
T KOG4341|consen  425 CRNLERIELIDC  436 (483)
T ss_pred             Ccccceeeeech
Confidence            888888887765

>KOG1947|consensus

Probab=93.44  E-value=0.026  Score=44.13  Aligned_cols=109  Identities=20%  Similarity=0.179  Sum_probs=74.0

Q ss_pred             CCCCCceEEcCCCc-ccc--ccCcc-ccCCCCeEeCCCC--CCCCcc----hhccCCCCCcEEEcCCCc-cccccCchhh
Q psy3781          50 NLRHLVYMNLENNK-LET--IDIDF-NFGHLRELNLSSN--KFQQIP----KCIFHLDNLEILILNNND-IEEINQPEKL  118 (183)
Q Consensus        50 ~~~~L~~L~l~~n~-l~~--~~~~~-~~~~L~~L~l~~~--~~~~~~----~~~~~~~~L~~l~l~~n~-~~~~~~~~~~  118 (183)
                      ..+.++.+.+.++. +..  +.... ..+.|+.++++++  .+...+    .....+.+++.++++++. +++.+.....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            36778888888774 443  22333 7889999999873  222111    122236889999999988 7777633333


Q ss_pred             hcCCCccEEeCCCCC-Cc--cCChhccccCcccEEeccCCcCC
Q psy3781         119 VKMQKLTVLDLSNNN-IR--KIPYELGLAQQLHHLNLVGNCFK  158 (183)
Q Consensus       119 ~~~~~L~~l~l~~n~-l~--~~~~~~~~~~~L~~l~l~~n~~~  158 (183)
                      ..+++|+.+.+.++. ++  .+......+++|+.|+++++...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            348999999988776 66  34444677889999999987544

>KOG0473|consensus

Probab=93.08  E-value=0.0015  Score=45.90  Aligned_cols=82  Identities=21%  Similarity=0.205  Sum_probs=44.7

Q ss_pred             CCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCC
Q psy3781          28 ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNN  106 (183)
Q Consensus        28 ~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~  106 (183)
                      +...+.|+++.|++-.+...|+-++.+..++++.|.+..+|.++ +...++.++...|+.++.|..+...+.+++++.-+
T Consensus        41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhcc
Confidence            34455555555555555555555555555555555555555555 44445555555555555555555555555555555


Q ss_pred             Ccc
Q psy3781         107 NDI  109 (183)
Q Consensus       107 n~~  109 (183)
                      +.+
T Consensus       121 ~~~  123 (326)
T KOG0473|consen  121 TEF  123 (326)
T ss_pred             Ccc
Confidence            543

>KOG4341|consensus

Probab=92.80  E-value=0.042  Score=42.00  Aligned_cols=146  Identities=21%  Similarity=0.124  Sum_probs=92.4

Q ss_pred             CCCccEEecCCC-ccee-cccccc-cCCCccEEEcCCCc-CCC--CCccccCCCCCceEEcCCCccccc---cCcc-ccC
Q psy3781           5 EAQVEQADLSYN-RLHV-VNSKLF-DITSIRELDLSHNL-IQN--LPPDLLNLRHLVYMNLENNKLETI---DIDF-NFG   74 (183)
Q Consensus         5 ~~~l~~l~l~~~-~i~~-l~~~~~-~~~~l~~l~l~~~~-l~~--l~~~~~~~~~L~~L~l~~n~l~~~---~~~~-~~~   74 (183)
                      +..++.++.+++ .++. .-..+. +.++|+.+.+.+|+ ++.  +...-.+.+.|+.+++.++....-   .... ..+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            456777777776 4442 222333 67899999999985 442  222234577899999988875422   2222 778


Q ss_pred             CCCeEeCCCCCCC------CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC-Cc--cCChhccccC
Q psy3781          75 HLRELNLSSNKFQ------QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN-IR--KIPYELGLAQ  145 (183)
Q Consensus        75 ~L~~L~l~~~~~~------~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-l~--~~~~~~~~~~  145 (183)
                      .++.+.++.+...      .+......+..+..+.+.+++.......+.+..++.|+.+++-+++ ++  .+.+.-.+++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp  452 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP  452 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence            8999999877433      2223333467788888988887654435777788899988887764 33  2333344566


Q ss_pred             cccEE
Q psy3781         146 QLHHL  150 (183)
Q Consensus       146 ~L~~l  150 (183)
                      ++++.
T Consensus       453 ~i~v~  457 (483)
T KOG4341|consen  453 NIKVH  457 (483)
T ss_pred             cceeh
Confidence            55543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=92.52  E-value=0.1  Score=23.70  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=17.5

Q ss_pred             CcccEEeccCCcCCCCcHHHhhh
Q psy3781         145 QQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       145 ~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      ++|++|++++|.+...+...+.+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            46788888888888777766654

>KOG0473|consensus

Probab=92.29  E-value=0.0026  Score=44.78  Aligned_cols=86  Identities=16%  Similarity=0.235  Sum_probs=70.3

Q ss_pred             ccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccE
Q psy3781          48 LLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV  126 (183)
Q Consensus        48 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~  126 (183)
                      +..+...+.||++.|.+..+...+ -+..+..++++.|.+...|..+.+...++.++...|..+..  |.+++..+.++.
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~--p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ--PKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC--CccccccCCcch
Confidence            455778888999999888777777 67788889999998888888877777777777777877777  788888999999


Q ss_pred             EeCCCCCCc
Q psy3781         127 LDLSNNNIR  135 (183)
Q Consensus       127 l~l~~n~l~  135 (183)
                      ++..++.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            998888765

>KOG3864|consensus

Probab=91.42  E-value=0.025  Score=38.97  Aligned_cols=79  Identities=22%  Similarity=0.187  Sum_probs=45.5

Q ss_pred             CCCeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCc-cccccCchhhh-cCCCccEEeCCCC-CCccCC-hhccccCcccE
Q psy3781          75 HLRELNLSSNKFQQIP-KCIFHLDNLEILILNNND-IEEINQPEKLV-KMQKLTVLDLSNN-NIRKIP-YELGLAQQLHH  149 (183)
Q Consensus        75 ~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~-~~~~L~~l~l~~n-~l~~~~-~~~~~~~~L~~  149 (183)
                      .++.++.+++.+.... ..+..++.++.|.+.++. +.+.. ..-++ -.++|+.|++++| .||+.. .++..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            4566777776655321 234455666666666653 33332 12222 3467888888877 466443 44677777777


Q ss_pred             EeccC
Q psy3781         150 LNLVG  154 (183)
Q Consensus       150 l~l~~  154 (183)
                      |++.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            77665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.60  E-value=0.5  Score=21.07  Aligned_cols=13  Identities=31%  Similarity=0.552  Sum_probs=5.5

Q ss_pred             CCceEEcCCCccc
Q psy3781          53 HLVYMNLENNKLE   65 (183)
Q Consensus        53 ~L~~L~l~~n~l~   65 (183)
                      +|+.|+++.|.|+
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            3444444444443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.52  E-value=0.36  Score=21.53  Aligned_cols=18  Identities=33%  Similarity=0.575  Sum_probs=12.2

Q ss_pred             CCccEEeCCCCCCccCCh
Q psy3781         122 QKLTVLDLSNNNIRKIPY  139 (183)
Q Consensus       122 ~~L~~l~l~~n~l~~~~~  139 (183)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            356667777777777765

>KOG3763|consensus

Probab=82.92  E-value=0.87  Score=36.36  Aligned_cols=61  Identities=28%  Similarity=0.283  Sum_probs=38.4

Q ss_pred             ccCCCCeEeCCCCCCCCcc---hhccCCCCCcEEEcCCC--ccccccCchhhh--cCCCccEEeCCCCCCc
Q psy3781          72 NFGHLRELNLSSNKFQQIP---KCIFHLDNLEILILNNN--DIEEINQPEKLV--KMQKLTVLDLSNNNIR  135 (183)
Q Consensus        72 ~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~l~l~~n--~~~~~~~~~~~~--~~~~L~~l~l~~n~l~  135 (183)
                      ..+.+..+.+++|++..+.   .-....|+|+.|+|++|  .+...   .++.  ....|+.|.+.||.+.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~---~el~K~k~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE---SELDKLKGLPLEELVLEGNPLC  283 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch---hhhhhhcCCCHHHeeecCCccc
Confidence            5566777788888777442   22224678888888888  33332   2222  2346788888888776

>KOG3864|consensus

Probab=81.98  E-value=1.2  Score=30.93  Aligned_cols=75  Identities=21%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             CCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC-CccC--ChhccccCcccEEeccCCc-CCCCcHHHhhhChHH
Q psy3781          96 LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN-IRKI--PYELGLAQQLHHLNLVGNC-FKYPRQDILQKGTPF  171 (183)
Q Consensus        96 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~--~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~  171 (183)
                      -..++.++.++..|...+ ...+..++.++.+.+..+. +.+.  ..--.-.++|+.|++++|+ |++.+...+.+-++.
T Consensus       100 ~~~IeaVDAsds~I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             cceEEEEecCCchHHHHH-HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            345788999999998888 7888889999999887774 4422  1112346799999999984 777776665554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-06
1ltx_A	567	Structure Of Rab Escort Protein-1 In Complex With R		1e-05
1dce_A	567	Crystal Structure Of Rab Geranylgeranyltransferase		1e-05
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		7e-05

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 6   AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNK 63
           AQ    DL  N L  + + +FD +TS+ +L L  N +Q+LP  + N L  L Y+NL  N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 64  LETI--DIDFNFGHLRELNLSSNKFQQIPKCIF 94
           L+++   +      L+EL L++N+ Q +P  +F
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120

>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 567

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 31  IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
           +  LDLSHN ++ LPP L  LR L  +   +N LE +D   N   L+EL L +N+ QQ
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522

>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 567

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 31  IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
           +  LDLSHN ++ LPP L  LR L  +   +N LE +D   N   L+EL L +N+ QQ
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ 522

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 40/175 (22%)
Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-- 67
           +L YN+L  +++ +FD +T +  L L++N + +LP  + + L  L  + L  N+L+++  
Sbjct: 65  NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 68  DIDFNFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVL 127
            +      L+EL L++N+ Q IP   F                         K+  L  L
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFD------------------------KLTNLQTL 160
Query: 128 DLSNNNIRKIPY----ELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
            LS N ++ +P+     LG   +L  + L GN F   R +IL     +L  ++R+
Sbjct: 161 SLSTNQLQSVPHGAFDRLG---KLQTITLFGNQFDCSRCEIL-----YLSQWIRE 207

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 40/175 (22%)
Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-- 67
           +L YN+L  +++ +FD +T +  L L++N + +LP  + + L  L  + L  N+L+++  
Sbjct: 65  NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 68  DIDFNFGHLRELNLSSNKFQQIPKCIFHXXXXXXXXXXXXXXXXXXQPEKLVKMQKLTVL 127
            +      L+EL L++N+ Q IP   F                         K+  L  L
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFD------------------------KLTNLQTL 160
Query: 128 DLSNNNIRKIPY----ELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
            LS N ++ +P+     LG   +L  + L GN F   R + L     +L  ++R+
Sbjct: 161 SLSTNQLQSVPHGAFDRLG---KLQTITLFGNQFDCSRCETL-----YLSQWIRE 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =   99 bits (249), Expect = 6e-25
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 19/161 (11%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL--------NLRHLVYMNLENN 62
            LSYN +    ++LF   + I  + LS+NL+ ++P + L        N   L  ++L  N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 63  KLETIDIDFNFG---HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ----- 114
           KL ++  DF      +L  +++S N F   P    +   L+   + +    E N+     
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           P  +     L  L + +N+IRK+  +L    QL+ L++  N
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.9 bits (236), Expect = 3e-23
 Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 19/177 (10%)

Query: 12  DLSYNRLHVVNSKLFDITSI----------RELDLSHNLIQNLPP--DLLNLRHLVYMNL 59
           +++ NR         D T +          +   + +N ++  P    L  +  L  ++ 
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 60  ENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL 118
            +NK+  ++       L +L L  N+ ++IP+      D +E L  ++N ++ I      
Sbjct: 581 VHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640

Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQ------QLHHLNLVGNCFKYPRQDILQKGT 169
             +  +  +D S N I      +  +           + L  N  +    ++   G+
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.7 bits (225), Expect = 9e-22
 Identities = 24/162 (14%), Positives = 58/162 (35%), Gaps = 18/162 (11%)

Query: 12  DLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPPDL------LNLRHLVYMNLENNK 63
             S+N+L  + +      +  +  +D S+N I +   ++          +   + L  N+
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684

Query: 64  LETIDIDF--NFGHLRELNLSSNKFQQIPK--------CIFHLDNLEILILNNNDIEEIN 113
           ++    +       +  + LS+N    IP+           +   L  + L  N +  ++
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744

Query: 114 QPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
              +   +  L+ +D+S N     P +   + QL    +   
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.2 bits (216), Expect = 1e-20
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 12/157 (7%)

Query: 12  DLSYNRLHVV--NSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
            + YN L     ++ L  +  +  LD  HN +++L         L  + L+ N++E I  
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPE 612

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDI----EEINQPEKLVKM 121
           DF      +  L  S NK + IP       +  +  +  + N I      I+      K 
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 122 QKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCF 157
              + + LS N I+K P E       +  + L  N  
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.1 bits (200), Expect = 2e-18
 Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 33/176 (18%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHN--------------------LIQNLPPDLLNL 51
               NR+  ++  +  +T ++ +  +++                      +N      NL
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 52  RHLVYMNL-ENNKLETIDIDF-NFGHLRELNLSSNKFQ----------QIPKCIFHLDNL 99
           + L  + L     +  +     +   L+ LN++ N+            ++         +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 100 EILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           +I  +  N++EE      L KM KL +LD  +N +R +    G   +L  L L  N
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 6e-17
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 22/145 (15%)

Query: 12  DLSYNRL--------HVVNSKLFDITSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLEN 61
            LS N +           +    +   +  +DL  N + +L  D     L +L  M++  
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762

Query: 62  NKLETIDID-FNFGHLRELNLSSNKF-------QQIPKCIFHLDNLEILILNNNDIEEIN 113
           N   +      N   L+   +   +        +Q P  I    +L  L + +NDI ++ 
Sbjct: 763 NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV- 821

Query: 114 QPEKLVKMQKLTVLDLSNNNIRKIP 138
             EKL    +L +LD+++N    I 
Sbjct: 822 -DEKL--TPQLYILDIADNPNISID 843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 15/163 (9%)

Query: 13  LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-------DLLNLRHLVYMNLENNKLE 65
               R+H     L     +   DL  + I   P          ++L+     NL  N++ 
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRIT 438

Query: 66  TIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
            I         L+ +  +++ F      +   D               N+      ++ L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-----NEELSWSNLKDL 493

Query: 125 TVLDLSNNN-IRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166
           T ++L N   + ++P  L    +L  LN+  N      Q    
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 20/170 (11%), Positives = 51/170 (30%), Gaps = 11/170 (6%)

Query: 24  KLFDITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
            L +   +  L L+       +P  +  L  L  ++   +   T+            ++S
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMS 376

Query: 83  SNKFQQIPKCIF-----HLDNLEILILNNNDIEEINQPEKLVKMQKL----TVLDLSNNN 133
             +  +I          +   L +  L  + I    + + + K  ++    T +    N 
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 134 IRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPST 183
           I  I   +    +L  +    + F Y    +  +      +   +    +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.5 bits (243), Expect = 3e-24
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DL  NR+  +N   F     + EL+L+ N++  + P    NL +L  + L +N+L+ I +
Sbjct: 38  DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
                  +L +L++S NK   +   +F  L NL+ L + +ND+  I        +  L  
Sbjct: 98  GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQ 156

Query: 127 LDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
           L L   N+  IP E L     L  L L   
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.0 bits (234), Expect = 5e-23
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 10/150 (6%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
                R   V   +   T  R LDL  N I+ L  D   +  HL  + L  N +  ++  
Sbjct: 17  LCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74

Query: 71  F--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
              N  +LR L L SN+ + IP  +F  L NL  L ++ N I  +        +  L  L
Sbjct: 75  AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL 133

Query: 128 DLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           ++ +N++  I +    GL   L  L L   
Sbjct: 134 EVGDNDLVYISHRAFSGL-NSLEQLTLEKC 162

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 6e-23
 Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSH-NLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
            L +  ++ +    F  +  ++ L++SH   +  + P+ L   +L  +++ +  L  +  
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241

Query: 70  D--FNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
               +  +LR LNLS N    I   + H L  L+ + L    +  + +P     +  L V
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRV 300

Query: 127 LDLSNNNIRKIPYEL--GLAQQLHHLNLVGNCF 157
           L++S N +  +   +   +   L  L L  N  
Sbjct: 301 LNVSGNQLTTLEESVFHSV-GNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.9 bits (226), Expect = 5e-22
 Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNL-ENNKLETID 68
            L    L  + ++    +  +  L L H  I  +       L  L  + +     L+T+ 
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 69  IDFNFG-HLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
            +  +G +L  L+++      +P     HL  L  L L+ N I  I +   L ++ +L  
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI-EGSMLHELLRLQE 276

Query: 127 LDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           + L    +  +      GL   L  LN+ GN
Sbjct: 277 IQLVGGQLAVVEPYAFRGL-NYLRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.0 bits (195), Expect = 8e-18
 Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 12  DLSY-NRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           ++S+   L  +        ++  L ++H  +  +P   + +L +L ++NL  N + TI+ 
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 70  D--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
                   L+E+ L   +   +    F  L+ L +L ++ N +  + +      +  L  
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLET 324

Query: 127 LDLSNNNIR 135
           L L +N + 
Sbjct: 325 LILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.8 bits (184), Expect = 2e-16
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 11/130 (8%)

Query: 32  RELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQQ 88
           R +         +P  +    R L   +L  N+++T++ D   +F HL EL L+ N    
Sbjct: 14  RAVLCHRKRFVAVPEGIPTETRLL---DLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 89  IPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQ 145
           +    F +L NL  L L +N ++ I        +  LT LD+S N I  +   +   L  
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDL-Y 128

Query: 146 QLHHLNLVGN 155
            L  L +  N
Sbjct: 129 NLKSLEVGDN 138

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 73  FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
               R +     +F  +P+ I       +L L  N I+ +   ++      L  L+L+ N
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNEN 66

Query: 133 NIRKIPYEL--GLAQQLHHLNLVGNCFKYPRQDILQ 166
            +  +       L   L  L L  N  K     +  
Sbjct: 67  IVSAVEPGAFNNL-FNLRTLGLRSNRLKLIPLGVFT 101

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.1 bits (242), Expect = 3e-24
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 6/149 (4%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSH-NLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
            L  N +  + S  F  + S+  LDL     ++ +       L +L Y+NL    ++ + 
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212

Query: 69  IDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
                  L EL +S N F +I    F  L +L+ L + N+ +  I +      +  L  L
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVEL 271

Query: 128 DLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
           +L++NN+  +P++     + L  L+L  N
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 14  SYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID-- 70
              +L  ++   F  + +++ L+L    I+++P +L  L  L  + +  N    I     
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 71  FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
                L++L + +++   I +  F  L +L  L L +N++  +   +    ++ L  L L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHL 297

Query: 130 SNNNIR 135
            +N   
Sbjct: 298 HHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 7e-16
 Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 28/147 (19%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
             +   L  V   +   ++ R L+L  N IQ +  D                        
Sbjct: 60  VCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFR--------------------- 96

Query: 72  NFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
           +  HL  L L  N  +QI    F+ L +L  L L +N +  I        + KL  L L 
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLR 155

Query: 131 NNNIRKIPYEL--GLAQQLHHLNLVGN 155
           NN I  IP      +   L  L+L   
Sbjct: 156 NNPIESIPSYAFNRV-PSLMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 73  FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
                ++  +     ++P+ I    N   L L  N+I+ I Q +    +  L VL L  N
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRN 109

Query: 133 NIRKIPYEL--GLAQQLHHLNLVGN 155
           +IR+I      GL   L+ L L  N
Sbjct: 110 SIRQIEVGAFNGL-ASLNTLELFDN 133

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 4e-24
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSH-NLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
            L  N +  + S  F  I S+R LDL     +  +       L +L Y+NL    L  I 
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201

Query: 69  IDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
                  L EL+LS N    I    F  L +L+ L +  + I+ I +      +Q L  +
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEI 260

Query: 128 DLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
           +L++NN+  +P++       L  ++L  N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.2 bits (224), Expect = 8e-22
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 12/152 (7%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            LS N +  +    F+ + ++  L+L  N +  +P      L  L  + L NN +E+I  
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153

Query: 70  D-FNF-GHLRELNLSS-NKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLT 125
             FN    LR L+L    +   I +  F  L NL  L L   ++ EI     L  + KL 
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN---LTPLIKLD 210

Query: 126 VLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
            LDLS N++  I      GL   L  L ++ +
Sbjct: 211 ELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 8e-21
 Identities = 45/151 (29%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
                 L  V   +   T+ R L+L  N IQ +  +   +LRHL  + L  N + TI+I 
Sbjct: 49  ICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106

Query: 71  --FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
                 +L  L L  N+   IP   F +L  L+ L L NN IE I       ++  L  L
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRL 165

Query: 128 DLSNNN-IRKIPYEL--GLAQQLHHLNLVGN 155
           DL     +  I      GL   L +LNL   
Sbjct: 166 DLGELKRLSYISEGAFEGL-SNLRYLNLAMC 195

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 5e-17
 Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 14  SYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID-- 70
              RL  ++   F  ++++R L+L+   ++ +P +L  L  L  ++L  N L  I     
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 71  FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
               HL++L +  ++ Q I +  F +L +L  + L +N++  +   +    +  L  + L
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHL 286

Query: 130 SNNNIR 135
            +N   
Sbjct: 287 HHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 73  FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
                ++       +++P  I    N  +L L+ N I+ I +      ++ L +L LS N
Sbjct: 42  SNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRN 98

Query: 133 NIRKIPYEL--GLAQQLHHLNLVGN 155
           +IR I      GL   L+ L L  N
Sbjct: 99  HIRTIEIGAFNGL-ANLNTLELFDN 122

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.3 bits (235), Expect = 7e-24
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 14/176 (7%)

Query: 9   EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI 67
            +   +   L  V + +   +S   L+L  N +Q+LP  +   L  L  ++L +N L   
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 68  DID----FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQK 123
                  F    L+ L+LS N    +      L+ LE L   +++++++++    + ++ 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 124 LTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
           L  LD+S+ + R     +  GL   L  L + GN      Q+         L  L 
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGN----SFQENFLPDIFTELRNLT 178

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 7e-23
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 12  DLSYNRL---HVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
            LS N L      +   F  TS++ LDLS N +  +  + L L  L +++ +++ L+ + 
Sbjct: 58  SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 117

Query: 69  IDFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
               F     L  L++S    +     IF  L +LE+L +  N  +E   P+   +++ L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 125 TVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           T LDLS   + ++       L   L  LN+  N
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHN 209

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.9 bits (221), Expect = 8e-22
 Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 10/153 (6%)

Query: 12  DLSYNRLHVVNSK--LFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
           D  ++ L  ++       + ++  LD+SH   +     +   L  L  + +  N  +   
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 69  IDFNF---GHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKL 124
           +   F    +L  L+LS  + +Q+    F+ L +L++L +++N+   +        +  L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSL 225

Query: 125 TVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
            VLD S N+I     +        L  LNL  N
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHN-LIQNLPPDLL-NLRHLVYMNLENNKLETID 68
           D+S+    V  + +F+ ++S+  L ++ N   +N  PD+   LR+L +++L   +LE + 
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191

Query: 69  ID--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
                +   L+ LN+S N F  +    +  L++L++L  + N I    + E       L 
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251

Query: 126 VLDLSNNNIR 135
            L+L+ N+  
Sbjct: 252 FLNLTQNDFA 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.5 bits (233), Expect = 2e-23
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 8/175 (4%)

Query: 9   EQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQN--LPPDLL-NLRHLVYMNLENNKL 64
           ++  +  N +  V   +F  +  +  ++L  N +++  +       ++ L Y+ + +  +
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 65  ETIDIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQK 123
            TI        L EL+L  NK  ++       L+NL  L L+ N I  +     L     
Sbjct: 184 TTIP-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPH 241

Query: 124 LTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY-PRQDILQKGTPFLLSYLR 177
           L  L L+NN + K+P  L   + +  + L  N        D    G     +   
Sbjct: 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DL  N++  +    F  + ++  L L +N I  + P     L  L  + L  N+L+ +  
Sbjct: 58  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117

Query: 70  DFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEIN-QPEKLVKMQKLTVL 127
                 L+EL +  N+  ++ K +F  L+ + ++ L  N ++    +      M+KL+ +
Sbjct: 118 KM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGN 155
            +++ NI  IP   GL   L  L+L GN
Sbjct: 177 RIADTNITTIP--QGLPPSLTELHLDGN 202

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 13/155 (8%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
            ++   +  +   L    S+ EL L  N I  +    L  L +L  + L  N +  +D  
Sbjct: 177 RIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 71  --FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEIN-----QPEKLVKMQK 123
              N  HLREL+L++NK  ++P  +     ++++ L+NN+I  I       P    K   
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 124 LTVLDLSNNNIRKIPYELGL---AQQLHHLNLVGN 155
            + + L +N ++    +            + L   
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 11/150 (7%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID 70
             S   L  V   L        LDL +N I  +      NL++L  + L NNK+  I   
Sbjct: 37  QCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94

Query: 71  F--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
                  L  L LS N+ +++P+ +     L+ L ++ N+I ++ +      + ++ V++
Sbjct: 95  AFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKV-RKSVFNGLNQMIVVE 151

Query: 129 LSNNNIRKIPYELGL---AQQLHHLNLVGN 155
           L  N ++    E G     ++L ++ +   
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-------LLNLRHLVYMNLENNKL 64
            L+ N+L  V   L D   I+ + L +N I  +  +                ++L +N +
Sbjct: 246 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 65  ETIDID----FNFGHLRELNLSSNK 85
           +  +I             + L + K
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 6e-23
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 13/159 (8%)

Query: 12  DLSYNRLHVVN--SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI-- 67
            + YN L      + L  +  +  L+  +N ++   P   +   L  +NL  N++  I  
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPA 370

Query: 68  DIDFNFGHLRELNLSSNKFQQIPKCIFH--LDNLEILILNNNDIEEINQ------PEKLV 119
           +       +  L+ + NK + IP       +  +  +  + N+I  ++            
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 120 KMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCF 157
           K   ++ ++LSNN I K P E       L  +NL+GN  
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 3e-22
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 19/161 (11%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL--------NLRHLVYMNLENN 62
           +LS N++     +LF   + +  ++L  N++  +P + L        N   L  ++L  N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 63  KLETIDIDFNFG---HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ----- 114
           KL  +  DF      +L  ++LS N F + P    +   L+   + N    + N+     
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           PE +     LT L + +N+IRK+  ++     +  L++  N
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.9 bits (213), Expect = 4e-20
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 12  DLSYNRLHVVNSKLF--DITSIRELDLSHNLI--------QNLPPDLLNLRHLVYMNLEN 61
             ++N+L  + +      ++ +  +D S+N I          L P      ++  +NL N
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 62  NKLETI--DIDFNFGHLRELNLSSNKFQQIPK--------CIFHLDNLEILILNNNDIEE 111
           N++     ++      L  +NL  N   +IPK           +   L  + L  N + +
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 112 INQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           ++   +   +  L  +DLS N+  K P +   +  L    +   
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.7 bits (197), Expect = 6e-18
 Identities = 25/175 (14%), Positives = 59/175 (33%), Gaps = 31/175 (17%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHN--------------------LIQNLPPDLLNL 51
               N +  V+  +  +T +R+  + ++                      +       NL
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248

Query: 52  RHLVYMNL-ENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKC---------IFHLDNLE 100
           + L  + +     L  +         ++ +N++ N+     +              + ++
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 101 ILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           I+ +  N+++       L KM+KL +L+   N +       G   +L  LNL  N
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 6e-16
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 12  DLSYNRLH--------VVNSKLFDITSIRELDLSHNLIQNLPPDL--LNLRHLVYMNLEN 61
           +L  N L           N    +   +  +DL  N +  L  D     L +LV ++L  
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522

Query: 62  NKLETIDID-FNFGHLRELNLSSNK-------FQQIPKCIFHLDNLEILILNNNDIEEIN 113
           N          N   L+   + + +        ++ P+ I    +L  L + +NDI ++ 
Sbjct: 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV- 581

Query: 114 QPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
             EK+     ++VLD+ +N    I    +    +     L  +
Sbjct: 582 -NEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 23/195 (11%), Positives = 49/195 (25%), Gaps = 29/195 (14%)

Query: 12  DLSYNRLHVVN-----SKLFDITSIRELDLSHNLIQNLPPD---LLNLRHLVYMNLENNK 63
            L  +   V         +    S  +        Q    D     +   L+   + ++ 
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

Query: 64  LETI--DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV-- 119
            +              ++   SN    + K +  L  L    + N+     N  E     
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

Query: 120 ----------------KMQKLTVLDLSNNN-IRKIPYELGLAQQLHHLNLVGNCFKYPRQ 162
                            ++ LT +++ N   + K+P  L    ++  +N+  N      Q
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 163 DILQKGTPFLLSYLR 177
                          
Sbjct: 291 LKDDWQALADAPVGE 305

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 13/140 (9%)

Query: 27  DITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFG------HLREL 79
               +  L L        +P  +  L  L  + L ++  +  +  F            + 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 80  NLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ----PEKLVKMQKLTVLDLSNNNIR 135
                 +      + +    +   L  + I    Q     +      K T +   +NNI 
Sbjct: 139 QKMRMHY--QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 136 KIPYELGLAQQLHHLNLVGN 155
            +   +    +L    +  +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNS 216

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 18/156 (11%), Positives = 48/156 (30%), Gaps = 14/156 (8%)

Query: 12  DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-----NLPPDLLNLRHLVYMNLENNKLE 65
            L        V   +  +T +  L L  +  +       P  +                +
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 66  TIDIDF----NFGHLRELNLSSN-KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVK 120
              +D+    +F  L +  ++S+ + + I K          +   +N+I  +   + +++
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV--SKAVMR 204

Query: 121 MQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGN 155
           + KL    + N+    +   E    +   +      
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 72  NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDI---EEINQPEKLVKMQKLTVL 127
           + G +  L+L       ++P  I  L  LE+L L ++     E +  P+ +         
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
                +       +    +    +L+ +C     Q    K +  +     
Sbjct: 139 QKMRMHY--QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 51/176 (28%), Positives = 74/176 (42%), Gaps = 12/176 (6%)

Query: 11  ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETID 68
              S  +L  V   L   +    LDLSHN +  L  +     L +L  + L +N L  I 
Sbjct: 23  LSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 69  IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
            +      +LR L+LSSN    + + +F  L  LE+L+L NN I  +        M +L 
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQ 139

Query: 126 VLDLSNNNIRKIPYE----LGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
            L LS N I + P E         +L  L+L  N  K      LQK   ++ + L 
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 7e-18
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 11/134 (8%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            LS+N L+ ++S+ F  + ++R LDLS N +  L   L  +L+ L  + L NN +  +D 
Sbjct: 70  LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129

Query: 70  D-F-NFGHLRELNLSSNKFQQIPKCIF----HLDNLEILILNNNDIEEINQPEKLVKMQK 123
           + F +   L++L LS N+  + P  +      L  L +L L++N ++++     L K+  
Sbjct: 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTDLQKLPA 188

Query: 124 LTV--LDLSNNNIR 135
                L L NN + 
Sbjct: 189 WVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 77  RELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK 136
             L+ S  +   +P+ +       +L L++N++  +       ++  L  L LS+N++  
Sbjct: 21  NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 137 IPYEL--GLAQQLHHLNLVGN 155
           I  E    +   L +L+L  N
Sbjct: 79  ISSEAFVPV-PNLRYLDLSSN 98

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 89.7 bits (223), Expect = 3e-22
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 8/151 (5%)

Query: 12  DLSYN-RLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
           DLS N +L  V+   F  +  +  L L    +Q L P L   L  L Y+ L++N L+ + 
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 69  IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
            D   + G+L  L L  N+   +P+  F  L +L+ L+L+ N +  +  P     + +L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLM 204

Query: 126 VLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
            L L  NN+  +P E L   + L +L L  N
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 29/148 (19%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
                 L  V   +    + + + L  N I ++P                          
Sbjct: 17  SCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFR--------------------- 53

Query: 72  NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILIL-NNNDIEEINQPEKLVKMQKLTVLDL 129
              +L  L L SN   +I    F  L  LE L L +N  +  +  P     + +L  L L
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHL 112

Query: 130 SNNNIRKIPYEL--GLAQQLHHLNLVGN 155
               ++++   L  GL   L +L L  N
Sbjct: 113 DRCGLQELGPGLFRGL-AALQYLYLQDN 139

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 77  RELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK 136
              +      Q +P  I      + + L+ N I  +         + LT+L L +N + +
Sbjct: 14  VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLAR 70

Query: 137 IPYEL--GLAQQLHHLNLVGNC 156
           I      GL   L  L+L  N 
Sbjct: 71  IDAAAFTGL-ALLEQLDLSDNA 91

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 4e-22
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 6/147 (4%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDI 69
           DL  N +  +    F  +  +  L L +N I  +       LR L  + +  N L  I  
Sbjct: 60  DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119

Query: 70  DFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
           +     L EL +  N+ +++PK +F  L N+  + +  N +E            KL  L 
Sbjct: 120 NL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGN 155
           +S   +  IP    L + L+ L+L  N
Sbjct: 179 ISEAKLTGIP--KDLPETLNELHLDHN 203

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.2 bits (219), Expect = 2e-21
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 6/151 (3%)

Query: 9   EQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLE 65
            +  +  NR+  V   +F  + ++  +++  N ++N    P   +   L Y+ +   KL 
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 66  TIDIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
            I  D     L EL+L  NK Q I          L  L L +N I  I +   L  +  L
Sbjct: 186 GIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTL 243

Query: 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
             L L NN + ++P  L   + L  + L  N
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.4 bits (204), Expect = 2e-19
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
            +S  +L  +   L    ++ EL L HN IQ +  + L     L  + L +N++  I+  
Sbjct: 178 RISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 71  --FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ-----PEKLVKMQK 123
                  LREL+L +NK  ++P  +  L  L+++ L+ N+I ++           VK   
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295

Query: 124 LTVLDLSNNNIRKIPYELGLAQQLHHL 150
              + L NN +     +    + +   
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 10/161 (6%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID 70
             S   L  V  ++        LDL +N I  L  D    L+HL  + L NNK+  I   
Sbjct: 39  QCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96

Query: 71  --FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
                  L++L +S N   +IP  +    +L  L +++N I ++        ++ +  ++
Sbjct: 97  AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE 153

Query: 129 LSNNNIRKIPYELGLAQ--QLHHLNLVGNCFKYPRQDILQK 167
           +  N +    +E G     +L++L +         +D+ + 
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            L +N++  +  +     + +  L L HN I+ +    L  L  L  ++L+NNKL  +  
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258

Query: 70  DF-NFGHLRELNLSSNKFQQIPKCIF-------HLDNLEILILNNNDIEEIN-QPEKLVK 120
              +   L+ + L +N   ++    F              + L NN +     QP     
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

Query: 121 MQKLTVLDLSNN 132
           +     +   N 
Sbjct: 319 VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-------LLNLRHLVYMNLENNKL 64
            L  N+L  V + L D+  ++ + L  N I  +  +        +   +   ++L NN +
Sbjct: 247 HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 65  ETIDID----FNFGHLRELNLSSNK 85
              ++             +   + K
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNYK 331

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 6e-22
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 12  DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
           DLS N L             TS++ LDLS N +  +  + L L  L +++ +++ L+ + 
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 69  IDFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
               F     L  L++S    +     IF  L +LE+L +  N  +E   P+   +++ L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 125 TVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQK 167
           T LDLS   + ++          L  LN+  N  K     I  +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 2e-20
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 10/154 (6%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DLS+N L  + S  F     ++ LDLS   IQ +      +L HL  + L  N ++++ +
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
                   L++L         +      HL  L+ L + +N I+    PE    +  L  
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 127 LDLSNNNIRKIPYEL-----GLAQQLHHLNLVGN 155
           LDLS+N I+ I          +      L+L  N
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 7e-20
 Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 9/162 (5%)

Query: 11  ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
                   + +   L    S + LDLS N +++L      +   L  ++L   +++TI+ 
Sbjct: 12  YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
               +  HL  L L+ N  Q +    F  L +L+ L+    ++  + +   +  ++ L  
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKE 128

Query: 127 LDLSNNNIRKIPYELGLAQ--QLHHLNLVGNCFKYPRQDILQ 166
           L++++N I+        +    L HL+L  N  +      L+
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.1 bits (203), Expect = 9e-19
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 8/149 (5%)

Query: 13  LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI--- 69
           L              + S++ L  + N   N     ++L  L +++L  N L        
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 70  -DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
            DF    L+ L+LS N    +      L+ LE L   +++++++++    + ++ L  LD
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 129 LSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           +S+ + R     +  GL   L  L + GN
Sbjct: 428 ISHTHTRVAFNGIFNGL-SSLEVLKMAGN 455

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 12  DLSYNRLHVV-NSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
           D  ++ L  +    +F  + ++  LD+SH   +     +   L  L  + +  N  +   
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 69  IDFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
           +   F     L  L+LS  + +Q+    F  L +L++L + +N ++ +       ++  L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP-DGIFDRLTSL 520

Query: 125 TVLDLSNNNI 134
             + L  N  
Sbjct: 521 QKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 9/136 (6%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETI- 67
                 L  + +     + +++EL+++HNLIQ+        NL +L +++L +NK+++I 
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 68  DIDFNF-----GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQ 122
             D             L+LS N    I    F    L  L L NN          +  + 
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 123 KLTVLDLSNNNIRKIP 138
            L V  L     R   
Sbjct: 226 GLEVHRLVLGEFRNEG 241

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 24/165 (14%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
               + L  + +   +   +  LD   + I +L   L N+      +L +  +E +    
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS---FSLVSVTIERVKDFS 301

Query: 72  NFGHLRELNLSSNKFQQIPKCIF--------------------HLDNLEILILNNNDIEE 111
                + L L + KF Q P                         L +LE L L+ N +  
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 112 IN-QPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
                +       L  LDLS N +  +       +QL HL+   +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 12  DLSYNRLH-VVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
            ++ N         +F  + ++  LDLS   ++ L P    +L  L  +N+ +N+L+++ 
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 69  IDF--NFGHLRELNLSSNKFQ 87
                    L+++ L +N + 
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWD 531

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           ++SYN L    S L    ++ ELD SHN I  +   +     L  + L++N L       
Sbjct: 192 NVSYNLL----STLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTAWLL 245

Query: 72  NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
           N+  L E++LS N+ ++I    F  +  LE L ++NN +  +        +  L VLDLS
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLS 303

Query: 131 NNNIRKIPYELGLAQQLHHLNLVGN 155
           +N++  +        +L +L L  N
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 2   IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
           +A    VE+ D S+N ++VV   +     +  L L HN + +    LLN   LV ++L  
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSY 257

Query: 62  NKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV 119
           N+LE I          L  L +S+N+   +      +  L++L L++N +  +       
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQP 315

Query: 120 KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           +  +L  L L +N+I  +   L     L +L L  N
Sbjct: 316 QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 8e-20
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 8/149 (5%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
               + +  + + L D    +  L+L+   I+ +          +  + +  N +  +  
Sbjct: 51  TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
               N   L  L L  N    +P+ IF +   L  L ++NN++E I + +       L  
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN 169

Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           L LS+N +  +   L L   L H N+  N
Sbjct: 170 LQLSSNRLTHVD--LSLIPSLFHANVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.6 bits (202), Expect = 8e-19
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 8/146 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
            L +N L      L +   + E+DLS+N ++ +       ++ L  + + NN+L  +++ 
Sbjct: 232 KLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290

Query: 71  F-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
                 L+ L+LS N    + +     D LE L L++N I  +     L     L  L L
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTL 346

Query: 130 SNNNIRKIPYELGLAQQLHHLNLVGN 155
           S+N+         L + +    +   
Sbjct: 347 SHNDWDCNSL-RALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 12/146 (8%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            L  N L  +   +F +   +  L +S+N ++ +  D       L  + L +N+L  +D+
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182

Query: 70  DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
                 L   N+S N    +   I     +E L  ++N I  +  P       +LT+L L
Sbjct: 183 S-LIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGP----VNVELTILKL 233

Query: 130 SNNNIRKIPYELGLAQQLHHLNLVGN 155
            +NN+    + L     L  ++L  N
Sbjct: 234 QHNNLTDTAWLLNY-PGLVEVDLSYN 258

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 22  NSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRE 78
             +   + + + +   ++ ++ LP  LL + R +  +NL + ++E ID         +++
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 97

Query: 79  LNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
           L +  N  + +P  +F ++  L +L+L  ND+  +          KLT L +SNNN+ +I
Sbjct: 98  LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERI 156

Query: 138 PYELGLA-QQLHHLNLVGN 155
             +   A   L +L L  N
Sbjct: 157 EDDTFQATTSLQNLQLSSN 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
           DLSYN L  +    F  +  +  L +S+N +  L      +  L  ++L +N L  ++ +
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN 313

Query: 71  -FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
              F  L  L L  N    +     H   L+ L L++ND +  +       + +  V D 
Sbjct: 314 QPQFDRLENLYLDHNSIVTLKLSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAVDD- 370

Query: 130 SNNNIRKIPYELG 142
             +   KI Y+L 
Sbjct: 371 -ADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 43  NLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEI 101
           NL  D +     V+++++   +     D    + + +   ++  +++P  +      +E+
Sbjct: 16  NLQYDCVFYD--VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 102 LILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGL-AQQLHHLNLVGN 155
           L LN+  IEEI+          +  L +  N IR +P  +      L  L L  N
Sbjct: 74  LNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.9 bits (221), Expect = 3e-21
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 9/155 (5%)

Query: 12  DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI 67
                    ++  +F+     S+  ++L  +   N+  +       L  ++L    L  +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 68  DIDF-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
                    L++L LS+NKF+ + +    +  +L  L +  N          L  ++ L 
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 126 VLDLSNNNIRKIPYELGLAQ---QLHHLNLVGNCF 157
            LDLS+++I          +    L  LNL  N  
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 5e-20
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 32/180 (17%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL---------------------- 49
           DL+   L  + S L  ++++++L LS N  +NL                           
Sbjct: 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

Query: 50  ----NLRHLVYMNLENNKLETIDID----FNFGHLRELNLSSNKFQQIPKCIF-HLDNLE 100
               NL +L  ++L ++ +ET D       N  HL+ LNLS N+   +    F     LE
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 101 ILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY 159
           +L L    ++  +       +  L VL+LS++ +     +       L HLNL GN F  
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 6e-20
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETID 68
           +LSYN    + ++ F +   +  LDL+   ++         NL  L  +NL ++ L+   
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441

Query: 69  IDF--NFGHLRELNLSSNKFQQIPKCIF----HLDNLEILILNNNDIEEINQPEKLVKMQ 122
                    L+ LNL  N F +           L  LEIL+L+  D+  I        ++
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLK 500

Query: 123 KLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166
            +  +DLS+N +     E     +  +LNL  N        +L 
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 7e-20
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 11  ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
            +     L+ +   L    S   L+ S N++  +       L +L +++L   ++  I  
Sbjct: 17  YNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
           D   +   L  L L++N    + +        L+ L      I  I     L   + L  
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI-DFIPLHNQKTLES 133

Query: 127 LDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKY 159
           L L +N+I  I   +    ++L  L+   N   Y
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 7e-19
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 12/154 (7%)

Query: 12  DLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
           DL++ RL V +++    ++  ++ L+LSH+L+      L   L  L ++NL+ N     +
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 69  IDF-----NFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQ 122
           I         G L  L LS      I +  F  L  +  + L++N +      E L  ++
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS-SIEALSHLK 524

Query: 123 KLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
            +  L+L++N+I  I    L +  Q   +NL  N
Sbjct: 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 7e-19
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DL+  +++ ++   F     +  L L+ N +  +    L   + L ++      + +ID 
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
               N   L  L L SN    I        + L++L   NN I  +   E +  +Q+ T 
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATN 181

Query: 127 --LDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
             L+L+ N+I  I      +     LN  G          L+  T   L    
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 12  DLSYNRLHVV---NSKLFDITSIRELDLSHNLIQNLPPDL---LNLRHLVYMNLENNKLE 65
           +    +  +V     K   I S+          +++ P +   L    +  +NL+ +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 66  TIDID--FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQK 123
            I  +    F  L+EL+L++    ++P  +  L  L+ L+L+ N  E +           
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPS 326

Query: 124 LTVLDLSNNNIRK--IPYELGLAQQLHHLNLVGNCFK 158
           LT L +  N  R       L   + L  L+L  +  +
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 11/158 (6%)

Query: 12  DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
           D   N +H ++ +        +   L+L+ N I  + P   +      +N    +   + 
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 69  ID----FNFGHLRELNLSSNKFQQIPKCIF---HLDNLEILILNNNDIEEINQPEKLVKM 121
                      L          + I   +F      ++E + L  +    I         
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-SSNTFHCF 277

Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY 159
             L  LDL+  ++ ++P  L     L  L L  N F+ 
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD----LLNLRHLVYMNLENNKLET 66
           +LS++ L + + +LFD + +++ L+L  N            L  L  L  + L    L +
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 67  IDIDF--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
           ID     +   +  ++LS N+                L L +N I  I  P  L  + + 
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIIL-PSLLPILSQQ 549

Query: 125 TVLDLSNNNI 134
             ++L  N +
Sbjct: 550 RTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 32  RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQQI 89
           +  +  +  +  +P  L N      +    N L TI         +L  L+L+  +   I
Sbjct: 15  KTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 90  PKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQL 147
            +  F     L+ L+L  N +  +     L   + L  L      I  I    L   + L
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 148 HHLNLVGN 155
             L L  N
Sbjct: 132 ESLYLGSN 139

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
            LS+  L  ++   F  +  +  +DLSHN + +   + L+    +Y+NL +N +  I   
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS 541

Query: 71  F--NFGHLRELNLSSNKFQQIPKCIFHL-DNLEILILNNNDIEEINQ-----PEKLVKMQ 122
                   R +NL  N       C       LE    N   +E+        P  L +  
Sbjct: 542 LLPILSQQRTINLRQNPLD----CTCSNIYFLEWYKENMQKLEDTEDTLCENPPLL-RGV 596

Query: 123 KLTVLDLS 130
           +L+ + LS
Sbjct: 597 RLSDVTLS 604

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 4e-21
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 6/168 (3%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETID 68
            L+ N++ ++        + ++ LDL  N I  +    L  +   L ++NL+ N +  + 
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 69  IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
               F  L+ L+LSSNK   +         +  + L NN +  I   + L   Q L   D
Sbjct: 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFD 243

Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFKY-PRQDILQKGTPFLLSY 175
           L  N           ++      +     K    Q+  +   P L  Y
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.1 bits (193), Expect = 8e-18
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            ++ + L    + L     +++ELDLS N +  +    L     L  +NL +N L     
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 70  DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
             +   LR L+L++N  Q++        ++E L   NN+I  ++      + Q    + L
Sbjct: 76  LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS----RGQGKKNIYL 127

Query: 130 SNNNIRKIP-YELGLAQQLHHLNLVGN 155
           +NN I  +   + G   ++ +L+L  N
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.2 bits (188), Expect = 4e-17
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 29  TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNK 85
              +   ++ + ++     L  +  ++  ++L  N L  I       F  L  LNLSSN 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 86  FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
             +    +  L  L  L LNNN ++E+           +  L  +NNNI ++    G  Q
Sbjct: 70  LYETL-DLESLSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISRVSCSRG--Q 120

Query: 146 QLHHLNLVGN 155
              ++ L  N
Sbjct: 121 GKKNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 68  DIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
           +I  N    +   ++ +  +Q    +     N++ L L+ N + +I     L    KL +
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLEL 62

Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           L+LS+N + +   +L     L  L+L  N
Sbjct: 63  LNLSSNVLYETL-DLESLSTLRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 89  IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQL 147
           I +   + +  +I  + ++ +++            +  LDLS N + +I    L    +L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 148 HHLNLVGN 155
             LNL  N
Sbjct: 61  ELLNLSSN 68

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 4e-21
 Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 13/155 (8%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           +L    L     + F ++ ++ + +    +  LP  +     L  + L  N L  +    
Sbjct: 87  ELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI 146

Query: 72  -NFGHLRELNLSS-NKFQQIPKCI---------FHLDNLEILILNNNDIEEINQPEKLVK 120
            +   LREL++ +  +  ++P+ +           L NL+ L L    I  +  P  +  
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIAN 204

Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           +Q L  L + N+ +  +   +    +L  L+L G 
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 11/158 (6%)

Query: 12  DLSYNRLHVVNSKLFDITSI--RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
             +   L      L D T      L+L    +   P     L HL +M ++   L  +  
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD 121

Query: 70  DF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN--------DIEEINQPEKLVK 120
               F  L  L L+ N  + +P  I  L+ L  L +            +   +   +   
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
           +  L  L L    IR +P  +   Q L  L +  +   
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 23  SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNL 81
            +   + +++ L L    I++LP  + NL++L  + + N+ L  +     +   L EL+L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236

Query: 82  SS-NKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLVKMQKLTVLDLSNN-NIRKIP 138
                 +  P        L+ LIL + +++  +  P  + ++ +L  LDL    N+ ++P
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGCVNLSRLP 294

Query: 139 YELGLAQQLHHLNLVGN 155
             +        + +  +
Sbjct: 295 SLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 15/157 (9%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSH-NLIQNLPPDLLN---------LRHLVYMNLEN 61
            L+ N L  + + +  +  +REL +     +  LP  L +         L +L  + LE 
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 62  NKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLV 119
             + ++     N  +L+ L + ++    +   I HL  LE L L     +     P    
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY--PPIFG 250

Query: 120 KMQKLTVLDLSN-NNIRKIPYELGLAQQLHHLNLVGN 155
               L  L L + +N+  +P ++    QL  L+L G 
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 4e-16
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 8/134 (5%)

Query: 28  ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI------DFNFGHLRELNL 81
              + +    +N  +N         +     +E      +        D        L L
Sbjct: 29  HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL 88

Query: 82  SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL 141
            S    Q P   F L +L+ + ++   + E+  P+ + +   L  L L+ N +R +P  +
Sbjct: 89  RSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL--PDTMQQFAGLETLTLARNPLRALPASI 146

Query: 142 GLAQQLHHLNLVGN 155
               +L  L++   
Sbjct: 147 ASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNL-ENNKLETIDID 70
            L +  +  + + + ++ +++ L + ++ +  L P + +L  L  ++L     L      
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 71  F-NFGHLRELNLSS-NKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLVKMQKLTVL 127
           F     L+ L L   +    +P  I  L  LE L L    ++  +  P  + ++    ++
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL--PSLIAQLPANCII 306

Query: 128 DLSNNNIRKIPYEL 141
            +  +   ++    
Sbjct: 307 LVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 14/133 (10%), Positives = 40/133 (30%), Gaps = 7/133 (5%)

Query: 29  TSIRELDLSH-NLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQ 87
           +    L       ++     L   +     N + N+  +     N  + +    +    +
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRH--YNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 88  QIPKCIFHL--DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
                +          L L +  + +   P++  ++  L  + +    + ++P  +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGLMELPDTMQQFA 127

Query: 146 QLHHLNLVGNCFK 158
            L  L L  N  +
Sbjct: 128 GLETLTLARNPLR 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.6 bits (220), Expect = 5e-21
 Identities = 30/162 (18%), Positives = 69/162 (42%), Gaps = 8/162 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDI 69
           DLS+N   ++++    +  ++ LD  H+ ++ +      L+L  L+Y+++     +    
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 70  DF--NFGHLRELNLSSNKFQQ-IPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
                   L  L ++ N F+      +F +  NL  L L+   +E+I+       + +L 
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQ 500

Query: 126 VLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQ 166
           +L++S+NN+  +          L  L+   N  +  +  +  
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.8 bits (218), Expect = 7e-21
 Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 8/152 (5%)

Query: 12  DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
           DLS N L       +      S+R LDLS N    +  + + L  L +++ +++ L+ + 
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 69  IDFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
               F     L  L++S    +     IF  L +L  L +  N  ++            L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 125 TVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
           T LDLS   + +I +       +L  LN+  N
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 11  ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
                 +L  V   +   +S + +DLS N ++ L      N   L +++L   ++ETI+ 
Sbjct: 16  YQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
                  HL  L L+ N  Q      F  L +LE L+     +  + +   + ++  L  
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL-ESFPIGQLITLKK 132

Query: 127 LDLSNNNIR--KIPYELGLAQQLHHLNLVGNCFKYPRQDILQ 166
           L++++N I   K+P        L H++L  N  +    + LQ
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.7 bits (210), Expect = 8e-20
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 8/153 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID--- 68
            +   +L    +   D+  ++ L L+ N   ++    + L  L Y++L  N L       
Sbjct: 313 SIIRCQLKQFPT--LDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 69  -IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
             D     LR L+LS N    +      L+ L+ L   ++ ++ + +    + ++KL  L
Sbjct: 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429

Query: 128 DLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY 159
           D+S  N +            L+ L + GN FK 
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 10/154 (6%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DLS+N L ++ S  F + + ++ LDLS   I+ +       L HL  + L  N +++   
Sbjct: 38  DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
                   L  L     K   +       L  L+ L + +N I     P     +  L  
Sbjct: 98  GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157

Query: 127 LDLSNNNIRKIPYEL-----GLAQQLHHLNLVGN 155
           +DLS N I+ I            Q    L++  N
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 11/156 (7%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DLS   +  +  K +  +  +  L L+ N IQ+  P     L  L  +     KL +++ 
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

Query: 70  DF--NFGHLRELNLSSNKFQQI--PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
                   L++LN++ N       P    +L NL  + L+ N I+ I     L  +++  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENP 180

Query: 126 ----VLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF 157
                LD+S N I  I  +     +LH L L GN  
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHN-LIQNLPPDLL-NLRHLVYMNLENNKLETID 68
           D+SY    +    +F  +TS+  L ++ N    N   ++  N  +L +++L   +LE I 
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489

Query: 69  IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
                    L+ LN+S N    +    +  L +L  L  + N IE   +       + L 
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLA 548

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNL 152
             +L+NN++  I       Q +     
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQ 575

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 12/150 (8%)

Query: 13  LSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
                L +    + +     +I E  L++    +        L ++  M+L    ++ ++
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301

Query: 69  IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
                   + L++   + +Q P     L  L+ L L  N   + +   K V +  L+ LD
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMN---KGSISFKKVALPSLSYLD 356

Query: 129 LSNNNIRKIP---YELGLAQQLHHLNLVGN 155
           LS N +       Y       L HL+L  N
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETID 68
                +L  + S     + ++++L+++HN I    LP    NL +LV+++L  N ++TI 
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 69  IDFNFGHLR-------ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
              +   LR        L++S N    I    F    L  L L  N          L  +
Sbjct: 170 -VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 122 QKLTVLDLSNNNIRKIP 138
             L V  L     +   
Sbjct: 229 AGLHVHRLILGEFKDER 245

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 6e-12
 Identities = 21/178 (11%), Positives = 53/178 (29%), Gaps = 19/178 (10%)

Query: 12  DLSYNRL--HVVNSKLFDITSIRELDLSHNLIQNL-------PPDLLNLRHLVYMNLENN 62
            L  N    +++ + L ++  +    L     ++        P  +  L  +        
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 63  KLETIDIDF----NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKL 118
                  D        ++  ++L+    + +     H    + L +    +++       
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRCQLKQFP----T 324

Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYL 176
           + +  L  L L+ N       ++ L   L +L+L  N   +             L +L
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 31/167 (18%), Positives = 68/167 (40%), Gaps = 18/167 (10%)

Query: 12  DLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPPDLL-----NLRHLVYMNLENNKL 64
           ++++N +H      +  ++T++  +DLS+N IQ +  + L     N +  + +++  N +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 65  ETIDID-FNFGHLRELNLSSNKF--QQIPKCIFHLDNLEILILNNNDIEEINQ-----PE 116
           + I    F    L EL L  N      +  C+ +L  L +  L   + ++        P 
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 117 KLVKMQKLTV--LDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYP 160
            +  +  +T+    L+  N       +      +  ++L G   KY 
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 5e-21
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 8/173 (4%)

Query: 9   EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETI 67
           E AD S+ +L  V   L   T+I  L+L+HN ++ LP  +      L  +++  N +  +
Sbjct: 7   EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 68  DIDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
           + +       L+ LNL  N+  Q+    F    NL  L L +N I++I +    VK + L
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNL 123

Query: 125 TVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYL 176
             LDLS+N +           + L  L L  N  +  + + L       L  L
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 12  DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI 67
            L    L  V+S         ++  LDLS+N I N+  D+L  L  L  ++L++N L  +
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 68  DIDFNFG----------HLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPE 116
               N G          HL  LNL SN F +IP  +F  L  L+I+ L  N++  +    
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL-PAS 578

Query: 117 KLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
                  L  L+L  N I  +  ++     + L  L++  N
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.7 bits (210), Expect = 9e-20
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 10/154 (6%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            +S   L  ++   F  +  +  L++  N I  +  ++   L +L Y++L N+      +
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 70  DFN------FGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQ 122
                       L  LNL+ NK  +I    F  L +LE+L L  N+I +    ++   ++
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 123 KLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGN 155
            +  + LS N   ++      L   L  L L   
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 14/160 (8%)

Query: 12  DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL--- 64
            LS N++  + S+  DI   +S+++L+LS N I+   P     +  L  + L N +L   
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 65  --ETIDIDFNFGHLRELNLSSNKFQQIPKCIF---HLDNLEILILNNNDIEEINQPEKLV 119
             E + ++     +R L+LS+++        F      NL +L L+ N++  +   +   
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG-NDSFA 269

Query: 120 KMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
            + +L    L  NNI+ +  + L     + +LNL  +  K
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 7e-19
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 18/172 (10%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLI-QNLPPDLL-NLRHLVYMNLENNKLETID 68
           +L+ N++  + S  F  +  +  LDL  N I Q L       L ++  + L  NK   + 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 69  IDF--NFGHLRELNLSSNKFQQI---PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQK 123
            +       L+ L L     + +   P     L NL IL L+NN+I  IN  + L  ++K
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEK 505

Query: 124 LTVLDLSNNNIRKI---------PYELGLAQQLHHLNLVGNCFKYPRQDILQ 166
           L +LDL +NN+ ++          Y L     LH LNL  N F     ++ +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 12/159 (7%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD---LLNLRHLVYMNLENNKLETI 67
           DLS+N L          + +++EL LS+N IQ L  +   +     L  + L +N+++  
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 68  DID--FNFGHLRELNLSSNKFQ-QIPKCIF---HLDNLEILILNNNDIEEINQPE-KLVK 120
                   G L  L L++ +    + + +       ++  L L+N+ +   +      +K
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 121 MQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
              LT+LDLS NN+  +         QL +  L  N  +
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 5e-16
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 13/136 (9%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD---------LLNLRHLVYMNLEN 61
           DLS N +  +N  +   +  +  LDL HN +  L            L  L HL  +NLE+
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 62  NKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL 118
           N  + I ++   +   L+ ++L  N    +P  +F +  +L+ L L  N I  + +    
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 119 VKMQKLTVLDLSNNNI 134
              + LT LD+  N  
Sbjct: 606 PAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 9e-16
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 11/149 (7%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDL-----LNLRHLVYMNLENNKLE 65
           ++  N +  + S +F  + +++ L LS++              L    L  +NL  NK+ 
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 66  TIDID--FNFGHLRELNLSSNKFQQI--PKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
            I+ D     GHL  L+L  N+  Q    +    L+N+  + L+ N   ++        +
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALV 453

Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHL 150
             L  L L    ++ +       Q L +L
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 19/166 (11%)

Query: 12  DLSYNRLHVVNSKLFDI----TSIRELDLSHNLIQNLPPDL---LNLRHLVYMNLENNKL 64
            L+  +L    ++   +    TSIR L LS++ +          L   +L  ++L  N L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 65  ETIDIDF--NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEIN-------- 113
             +  D       L    L  N  Q +    +  L N+  L L  +  ++          
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 114 QPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
                  ++ L  L++ +N+I  I          L +L+L  +   
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 29  TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSNK 85
            S    D SH  +  +P DL    ++  +NL +N+L  +    NF     L  L++  N 
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNT 60

Query: 86  FQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGL 143
             ++   +   L  L++L L +N++ +++  +       LT L L +N+I+KI       
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 144 AQQLHHLNLVGNCFK 158
            + L  L+L  N   
Sbjct: 120 QKNLITLDLSHNGLS 134

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 14/131 (10%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           +L  N    +  ++F D+  ++ +DL  N +  LP  +  N   L  +NL+ N + +++ 
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 70  DF---NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEI------NQPEKLVK 120
                 F +L EL++  N F     C      +  +   + +I E+      N P     
Sbjct: 602 KVFGPAFRNLTELDMRFNPFDCT--CESIAWFVNWINETHTNIPELSSHYLCNTPPHY-H 658

Query: 121 MQKLTVLDLSN 131
              + + D S+
Sbjct: 659 GFPVRLFDTSS 669

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 6e-21
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 8/164 (4%)

Query: 12  DLSYNRL---HVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI- 67
           DLS N L      +   F  TS++ LDLS N +  +  + L L  L +++ +++ L+ + 
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 68  --DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
              +  +  +L  L++S    +     IF  L +LE+L +  N  +E   P+   +++ L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 125 TVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
           T LDLS   + ++ P        L  LN+  N F        + 
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.9 bits (213), Expect = 3e-20
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 8/168 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETIDI 69
           DLS+N +  ++S    +  +  LD  H+ ++ +      L+LR+L+Y+++ +        
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 70  DF--NFGHLRELNLSSNKFQ-QIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
                   L  L ++ N FQ      IF  L NL  L L+   +E+++ P     +  L 
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQ 497

Query: 126 VLDLSNNNIRK-IPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFL 172
           VL++S+NN      +       L  L+   N     ++  LQ     L
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 4e-19
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 9/163 (5%)

Query: 11  ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
                   + +   L    S + LDLS N +++L      +   L  ++L   +++TI+ 
Sbjct: 12  YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 70  DF--NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
               +  HL  L L+ N  Q +       L +L+ L+    ++  + +   +  ++ L  
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKE 128

Query: 127 LDLSNNNIR--KIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
           L++++N I+  K+P        L HL+L  N  +      L+ 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DLS+N L  + S  F     ++ LDLS   IQ +      +L HL  + L  N ++++ +
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 70  D--FNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
                   L++L              I HL  L+ L + +N I+    PE    +  L  
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 127 LDLSNNNIRKI-PYELGLAQQLHHLNL 152
           LDLS+N I+ I   +L +  Q+  LNL
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 10/153 (6%)

Query: 12  DLSYNRLHVV--NSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID 68
           D  ++ L  +   S    + ++  LD+SH   +     +   L  L  + +  N  +   
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 69  IDFNFG---HLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKL 124
           +   F    +L  L+LS  + +Q+    F+ L +L++L +++N+   +        +  L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSL 520

Query: 125 TVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
            VLD S N+I     +        L  LNL  N
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI-- 69
           +L   +     +      S++ L  + N         ++L  L +++L  N L       
Sbjct: 310 ELVNCKFGQFPTLKL--KSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 70  --DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
             DF    L+ L+LS N    +      L+ LE L   +++++++++    + ++ L  L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 128 DLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
           D+S+ + R            L  L + GN F+
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 6/129 (4%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHN-LIQNLPPDLL-NLRHLVYMNLENNKLETID 68
           D+S+    V  + +F+ ++S+  L ++ N   +N  PD+   LR+L +++L   +LE + 
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 69  IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
                +   L+ LN+S N F  +    +  L++L++L  + N I    + E       L 
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546

Query: 126 VLDLSNNNI 134
            L+L+ N+ 
Sbjct: 547 FLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 24/150 (16%)

Query: 30  SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQI 89
            +  LD   + I +L   L N+      +L +  +E +         + L L + KF Q 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSF---SLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 90  PKCIF--------------------HLDNLEILILNNNDIEEINQ-PEKLVKMQKLTVLD 128
           P                         L +LE L L+ N +       +       L  LD
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
           LS N +  +       +QL HL+   +  K
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 12  DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETID 68
                 L  + N  +  + +++EL+++HNLIQ   LP    NL +L +++L +NK+++I 
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI- 164

Query: 69  IDFNFGHLR-------ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
              +   L         L+LS N    I    F    L  L L NN          +  +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 122 QKLTVLDLSNNNIR 135
             L V  L     R
Sbjct: 225 AGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DLS  +L  ++   F  ++S++ L++SHN   +L       L  L  ++   N + T   
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 70  DF---NFGHLRELNLSSNKFQ 87
                    L  LNL+ N F 
Sbjct: 536 QELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 78  ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
                   F +IP  +    + + L L+ N +  +          +L VLDLS   I+ I
Sbjct: 11  TYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTI 67

Query: 138 -PYELGLAQQLHHLNLVGN 155
                     L  L L GN
Sbjct: 68  EDGAYQSLSHLSTLILTGN 86

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 3e-20
 Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 12  DLSYNRLH-VVNSKLFDI--TSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-T 66
           DLS N     +   L      +++EL L +N     +PP L N   LV ++L  N L  T
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

Query: 67  IDIDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQK 123
           I     +   LR+L L  N  + +IP+ + ++  LE LIL+ ND+  EI  P  L     
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTN 491

Query: 124 LTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
           L  + LSNN +  +IP  +G  + L  L L  N F
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 3e-20
 Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 29/175 (16%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENN-------- 62
           D+S N        L D ++++ LD+S N +  +    +     L  +N+ +N        
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 63  ----KLETID-------------IDFNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILIL 104
                L+ +              +      L  L+LS N F   +P        LE L L
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 105 NNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELG-LAQQLHHLNLVGNCF 157
           ++N+       + L+KM+ L VLDLS N    ++P  L  L+  L  L+L  N F
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE-TIDID 70
            +S N++      +    ++  LD+S N      P L +   L ++++  NKL       
Sbjct: 184 AISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242

Query: 71  F-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
                 L+ LN+SSN+F   IP     L +L+ L L  N                LT LD
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

Query: 129 LSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
           LS N+    +P   G    L  L L  N F
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 3e-16
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 33/172 (19%)

Query: 12  DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNK------ 63
            L  N     +   L + + +  L LS N +   +P  L +L  L  + L  N       
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 64  --------LETIDIDFN------------FGHLRELNLSSNKFQ-QIPKCIFHLDNLEIL 102
                   LET+ +DFN              +L  ++LS+N+   +IPK I  L+NL IL
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 103 ILNNNDIE-EINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNL 152
            L+NN     I  P +L   + L  LDL+ N     IP  +         N 
Sbjct: 520 KLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 17/158 (10%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQ-NLPPD--LLNLRHLVYMNLENNKLE--- 65
            LS + ++   S      S+  LDLS N +   +     L +   L ++N+ +N L+   
Sbjct: 83  FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142

Query: 66  TIDIDFNFGHLRELNLSSNKFQ-QIPKCIF---HLDNLEILILNNNDIE-EINQPEKLVK 120
            +        L  L+LS+N                  L+ L ++ N I  +++    + +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSR 198

Query: 121 MQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
              L  LD+S+NN    IP  LG    L HL++ GN  
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 8e-16
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 29  TSIRELDLSHN----LIQNLPPDLLNLRHLVYMNLENNKLE-TIDIDFNFGHLRELNLSS 83
             +  +DLS          +   LL+L  L  + L N+ +  ++        L  L+LS 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 84  NKFQ-QIP--KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPY 139
           N     +     +     L+ L +++N ++   +    +K+  L VLDLS N+I      
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 140 ELGLAQQLH---HLNLVGNCF 157
              L+       HL + GN  
Sbjct: 170 GWVLSDGCGELKHLAISGNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 32/174 (18%), Positives = 56/174 (32%), Gaps = 27/174 (15%)

Query: 12  DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-TID 68
            L  N L   +  +L  + ++  L L  N +   +P  L N  +L +++L NN+L   I 
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

Query: 69  IDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE---------------- 110
                  +L  L LS+N F   IP  +    +L  L LN N                   
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567

Query: 111 ---EINQPEKLVKMQKLTVLDLSNNNIR---KIPYELGLAQQLHHLNLVGNCFK 158
                 +   +           + N +        +L      +  N+    + 
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 9e-15
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 9/152 (5%)

Query: 12  DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLETIDI 69
            LS N     + ++L D  S+  LDL+ NL    +P  +      +  N    K      
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR--YVY 577

Query: 70  DFNFGHLRELNLSSNKFQ---QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
             N G  +E + + N  +      + +  L       + +      +          +  
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNNGSMMF 636

Query: 127 LDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
           LD+S N +   IP E+G    L  LNL  N  
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 11/153 (7%)

Query: 12  DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ---NLPPDLLNLRHLVYMNLENNKL--E 65
            ++ N +       + +    +E   + NL++        L  L      N+ +      
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 66  TIDIDFNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQK 123
           T     N G +  L++S N     IPK I  +  L IL L +NDI   I  P+++  ++ 
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI--PDEVGDLRG 681

Query: 124 LTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGN 155
           L +LDLS+N +  +IP  +     L  ++L  N
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.3 bits (160), Expect = 5e-13
 Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 2   IAKEAQVEQADLSYNRLH---VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYM 57
           I  +   ++   + N L    + + +L  +++    +++  +   +  P   N   ++++
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 58  NLENNKLE-TIDIDF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EIN 113
           ++  N L   I  +  +  +L  LNL  N     IP  +  L  L IL L++N ++  I 
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI- 696

Query: 114 QPEKLVKMQKLTVLDLSNNN 133
            P+ +  +  LT +DLSNNN
Sbjct: 697 -PQAMSALTMLTEIDLSNNN 715

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.5 bits (212), Expect = 5e-20
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 8/151 (5%)

Query: 11  ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
            D        + S L    +++ LDLS N I  +   DL    +L  + L+++++ TI+ 
Sbjct: 10  CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 70  D--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
           D  ++ G L  L+LS N    +    F  L +L+ L L  N  + +        +  L  
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 127 LDLSNNNIRKIPYELGLA--QQLHHLNLVGN 155
           L + N         +  A    L+ L +   
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 11/148 (7%)

Query: 12  DLSYNRLHVVNSKLFDI---TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
            LS N L  +      +    ++  LD+S N    +P        + ++NL +  +  + 
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK 426

Query: 69  IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
                  L  L++S+N           L  L+ L ++ N ++ +           L V+ 
Sbjct: 427 TC-IPQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKTL---PDASLFPVLLVMK 479

Query: 129 LSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
           +S N ++ +P         L  + L  N
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           D+S N  H +         +R L+LS   I+ +   +   + L  +++ NN L++  +  
Sbjct: 393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL-- 448

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
               L+EL +S NK + +P        L ++ ++ N ++ +       ++  L  + L  
Sbjct: 449 FLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQLKSVP-DGIFDRLTSLQKIWLHT 506

Query: 132 NNI 134
           N  
Sbjct: 507 NPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 9/175 (5%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DLS+N++  +         +++ L L  + I  +  D   +L  L +++L +N L ++  
Sbjct: 32  DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF--HLDNLEILIL-NNNDIEEINQPEKLVKMQKL 124
            +      L+ LNL  N +Q +       +L NL+ L + N     EI +      +  L
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSL 150

Query: 125 TVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRD 178
             L++   ++R      L   + +HHL L  +   +  +      +      LRD
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 17/181 (9%)

Query: 12  DLSYNRLHVVNSKLFDI---------TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLEN 61
           D + N L   N    D+          +IR L +    +      +   L  +  + +EN
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 62  NKLETIDIDF--NFGHLRELNLSSNKFQQI----PKCIFHLDNLEILILNNNDIEEI-NQ 114
           +K+  +   F  +   L  L+LS N   +       C     +L+ L+L+ N +  +   
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLS 174
            E L+ ++ LT LD+S N    +P      +++  LNL     +  +  I Q      +S
Sbjct: 380 GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 439

Query: 175 Y 175
            
Sbjct: 440 N 440

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           D+S N L   +  L     ++EL +S N ++ LP   L    L+ M +  N+L+++    
Sbjct: 437 DVSNNNLDSFSLFL---PRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQLKSVPDGI 492

Query: 72  --NFGHLRELNLSSNKFQ 87
                 L+++ L +N + 
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 23/170 (13%)

Query: 12  DLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPD------------LLNLRHLVYMN 58
            L  +    +     DI +S+R L+L    +                   L  R  V  +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 59  LENNKLETI-DIDFNFGHLRELNLSSNKFQQIPKCIF----HLDNLEILILNNNDIEEIN 113
              N+L  +         +   + + N               L  +E + +    I +  
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 114 ----QPEKLVKMQKLTVLDLSNNNIRKIPYELG-LAQQLHHLNLVGNCFK 158
                      ++K+  + + N+ +  +P       + L  L+L  N   
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.5 bits (207), Expect = 5e-20
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DLS+N L  + S  F     ++ LDLS   IQ +      +L HL  + L  N ++++ +
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
                   L++L         +      HL  L+ L + +N I+    PE    +  L  
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 127 LDLSNNNIRKIP 138
           LDLS+N I+ I 
Sbjct: 154 LDLSSNKIQSIY 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.1 bits (206), Expect = 7e-20
 Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 29  TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNK 85
            S + LDLS N +++L      +   L  ++L   +++TI+     +  HL  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 86  FQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE---L 141
            Q +    F  L +L+ L+    ++  + +   +  ++ L  L++++N I+         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 142 GLAQQLHHLNLVGNCFKYPRQDILQK 167
            L   L HL+L  N  +      L+ 
Sbjct: 147 NLT-NLEHLDLSSNKIQSIYCTDLRV 171

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.2 bits (196), Expect = 2e-18
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            L+ N +  +    F  ++S+++L      + +L    + +L+ L  +N+ +N +++  +
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 70  DFNF---GHLRELNLSSNKFQQIPKCIF-HLDNLEI----LILNNNDIEEINQPEKLVKM 121
              F    +L  L+LSSNK Q I       L  + +    L L+ N +  I       K 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKE 199

Query: 122 QKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
            +L  L L  N ++ +P  +   L   L  + L  N
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTN 234

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.3 bits (211), Expect = 5e-20
 Identities = 32/175 (18%), Positives = 65/175 (37%), Gaps = 9/175 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
             + N +  V+         + + L++N I  L          + Y++L+ N+++T++  
Sbjct: 105 HAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 71  FNFGH---LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
                   L  LNL  N    +   +     L+ L L++N +  +    +      +T +
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFM--GPEFQSAAGVTWI 219

Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
            L NN +  I   L  +Q L H +L GN F              + +  +  +  
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.0 bits (205), Expect = 4e-19
 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           +LS N L+     L  ++++R LDL++N +Q L         +  ++  NN +  +    
Sbjct: 64  NLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS- 117

Query: 72  NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
                + + L++NK   +          ++ L L  N+I+ +N  E       L  L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 131 NNNIRKIPYELGLAQQLHHLNLVGN 155
            N I  +  ++    +L  L+L  N
Sbjct: 178 YNFIYDVKGQVVF-AKLKTLDLSSN 201

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.6 bits (204), Expect = 5e-19
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 5/161 (3%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETID 68
            L+ N++ ++        + ++ LDL  N I  +    L  +   L ++NL+ N +  + 
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185

Query: 69  IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
               F  L+ L+LSSNK   +         +  + L NN +  I   + L   Q L   D
Sbjct: 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFD 243

Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGT 169
           L  N           ++      +     K       ++ T
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.6 bits (178), Expect = 1e-15
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            ++ + L    + L     +++ELDLS N +  +    L     L  +NL +N L     
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 70  DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
             +   LR L+L++N  Q++        ++E L   NN+I  ++      + Q    + L
Sbjct: 76  LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS----RGQGKKNIYL 127

Query: 130 SNNNIRKIP-YELGLAQQLHHLNLVGN 155
           +NN I  +   + G   ++ +L+L  N
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 5e-14
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 12/132 (9%)

Query: 27  DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS 83
           +    +   ++ + ++     L  +  ++  ++L  N L  I       F  L  LNLSS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 84  NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGL 143
           N   +    +  L  L  L LNNN ++E+           +  L  +NNNI ++    G 
Sbjct: 68  NVLYETLD-LESLSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISRVSCSRG- 119

Query: 144 AQQLHHLNLVGN 155
            Q   ++ L  N
Sbjct: 120 -QGKKNIYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 49  LNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILN 105
            N        + ++ L+        +  +++EL+LS N   QI          LE+L L+
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 106 NNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDIL 165
           +N + E      L  +  L  LDL+NN ++++         +  L+   N          
Sbjct: 67  SNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRG 119

Query: 166 Q 166
           Q
Sbjct: 120 Q 120

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 68  DIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
           +I  N    +   ++ +  +Q    +     N++ L L+ N + +I     L    KL +
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLEL 62

Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           L+LS+N + +   +L     L  L+L  N
Sbjct: 63  LNLSSNVLYETL-DLESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 14/139 (10%), Positives = 44/139 (31%), Gaps = 3/139 (2%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
               +    +  +  +    RE+D      + +   +    +  + +  +   L+    +
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378

Query: 71  FNFGH--LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
               H  L      +    ++         L++L       EE+   ++ V+   +   D
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438

Query: 129 LSNNNIRKIPYELGLAQQL 147
           +  +   ++  E    ++L
Sbjct: 439 MYQHKETQLAEENARLKKL 457

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 14/132 (10%), Positives = 40/132 (30%), Gaps = 10/132 (7%)

Query: 29  TSIRELDLSHNLIQNLPPDL------LNLRHLVYMNLENNKLETIDID-FNFGHLRELNL 81
           T            ++LP         L  +    ++ + ++ E ++ +  N    RE++ 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 82  SSNKFQQIPKCIFH-LDNLEILILNNNDIEEI--NQPEKLVKMQKLTVLDLSNNNIRKIP 138
              +++ +   +         L      ++E   N      ++       +    ++   
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT 403

Query: 139 YELGLAQQLHHL 150
            E    Q L  +
Sbjct: 404 EEQSPLQLLRAI 415

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.9 bits (210), Expect = 8e-20
 Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 16/158 (10%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
               N+L  +       + ++EL +S N + +LP     L  L      NN+L ++    
Sbjct: 167 WAYNNQLTSLPM---LPSGLQELSVSDNQLASLPTLPSELYKL---WAYNNRLTSLPA-- 218

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
               L+EL +S N+   +P        L+ L+++ N +  +  P        L  L +  
Sbjct: 219 LPSGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTSL--PMLP---SGLLSLSVYR 270

Query: 132 NNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGT 169
           N + ++P  L        +NL GN         L++ T
Sbjct: 271 NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 8e-17
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 19/150 (12%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
           A +    +  N L  + +       +R L++S N + +LP     L  L   +     L 
Sbjct: 61  AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP 117

Query: 66  TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
            +        L +L +  N+   +P        L+ L +++N +  +  P       +L 
Sbjct: 118 AL-----PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL--PALP---SELC 164

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
            L   NN +  +P        L  L++  N
Sbjct: 165 KLWAYNNQLTSLPMLPS---GLQELSVSDN 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.9 bits (184), Expect = 3e-16
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 15/127 (11%)

Query: 29  TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
                L++  + +  LP  L    H+  + + +N L ++        LR L +S N+   
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS 95

Query: 89  IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLH 148
           +P     L  L I       +  +           L  L +  N +  +P        L 
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLTSLPVLPP---GLQ 144

Query: 149 HLNLVGN 155
            L++  N
Sbjct: 145 ELSVSDN 151

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 5/123 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            +S NRL  +       + +  L +  N +  LP  L++L     +NLE N L    +  
Sbjct: 247 MVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ- 302

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEI-LILNNNDIEEINQPEKLVKMQKLTVLDLS 130
               +      S    +              L L   D     +  +     +  +    
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

Query: 131 NNN 133
           +N 
Sbjct: 363 DNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 76  LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135
             E    +   Q++  C    +   +L +  + +  +  P+ L     +T L + +NN+ 
Sbjct: 21  AEESRGRAAVVQKMRAC--LNNGNAVLNVGESGLTTL--PDCL--PAHITTLVIPDNNLT 74

Query: 136 KIPYELGLAQQLHHLNLVGN 155
            +P       +L  L + GN
Sbjct: 75  SLPALPP---ELRTLEVSGN 91

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.0 bits (210), Expect = 8e-20
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           ++SYN L    S L    ++ ELD SHN I  +   +     L  + L++N L       
Sbjct: 198 NVSYNLL----STLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTAWLL 251

Query: 72  NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
           N+  L E++LS N+ ++I    F  +  LE L ++NN +  +        +  L VLDLS
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLS 309

Query: 131 NNNIRKIPYELGLAQQLHHLNLVGN 155
           +N++  +        +L +L L  N
Sbjct: 310 HNHLLHVERNQPQFDRLENLYLDHN 334

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.9 bits (202), Expect = 9e-19
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 2   IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
           +A    VE+ D S+N ++VV   +     +  L L HN + +    LLN   LV ++L  
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSY 263

Query: 62  NKLETIDID--FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV 119
           N+LE I          L  L +S+N+   +      +  L++L L++N +  +       
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQP 321

Query: 120 KMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           +  +L  L L +N+I  +   L     L +L L  N
Sbjct: 322 QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.1 bits (200), Expect = 2e-18
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 22/169 (13%)

Query: 7   QVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL 64
           QVE  +L+  ++  +++  F    +I++L +  N I+ LPP +  N+  L  + LE N L
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 65  ETIDIDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEI--------- 112
            ++      N   L  L++S+N  ++I    F    +L+ L L++N +  +         
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195

Query: 113 ------NQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
                 N    L     +  LD S+N+I  +     +  +L  L L  N
Sbjct: 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHN 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.9 bits (189), Expect = 5e-17
 Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 8/146 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
            L +N L      L +   + E+DLS+N ++ +       ++ L  + + NN+L  +++ 
Sbjct: 238 KLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296

Query: 71  F-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
                 L+ L+LS N    + +     D LE L L++N I  +           L  L L
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS----THHTLKNLTL 352

Query: 130 SNNNIRKIPYELGLAQQLHHLNLVGN 155
           S+N+         L + +    +   
Sbjct: 353 SHNDWDCNSL-RALFRNVARPAVDDA 377

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.1 bits (187), Expect = 1e-16
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 22  NSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF--NFGHLRE 78
             +   + + + +   ++ ++ LP  LL + R +  +NL + ++E ID         +++
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 103

Query: 79  LNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
           L +  N  + +P  +F ++  L +L+L  ND+  +          KLT L +SNNN+ +I
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERI 162

Query: 138 PYELGLA-QQLHHLNLVGN 155
             +   A   L +L L  N
Sbjct: 163 EDDTFQATTSLQNLQLSSN 181

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.3 bits (185), Expect = 2e-16
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 14/147 (9%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            +S N L  +    F   TS++ L LS N + ++   L+ +L H    N+  N L T+ I
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA---NVSYNLLSTLAI 209

Query: 70  DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
                 + EL+ S N    +   +     L IL L +N++ +      L+    L  +DL
Sbjct: 210 PIA---VEELDASHNSINVVRGPVNV--ELTILKLQHNNLTDTAW---LLNYPGLVEVDL 261

Query: 130 SNNNIRKIPYE-LGLAQQLHHLNLVGN 155
           S N + KI Y      Q+L  L +  N
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 6e-14
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 4/123 (3%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
           DLSYN L  +    F  +  +  L +S+N +  L      +  L  ++L +N L  ++ +
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN 319

Query: 71  -FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
              F  L  L L  N    +     H   L+ L L++ND +  +       + +  V D 
Sbjct: 320 QPQFDRLENLYLDHNSIVTLKLSTHH--TLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 377

Query: 130 SNN 132
             +
Sbjct: 378 DQH 380

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.1 bits (208), Expect = 2e-19
 Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 14/152 (9%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DLS+  +  +NS++F  +  ++ L+L++N I  +  +    L +L  +NL  N L  +  
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 70  D--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
              +    +  ++L  N    I    F  L+ L+ L L +N +  I+       +  +  
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------IPSIPD 385

Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
           + LS N +  +P    +    + ++L  N  +
Sbjct: 386 IFLSGNKLVTLPK---INLTANLIHLSENRLE 414

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 1e-18
 Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 11/175 (6%)

Query: 11  ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLE-TID 68
           A   +  L  V      + +   L LS N I+ +       L  L  + L +     TID
Sbjct: 9   AFYRFCNLTQV---PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 69  IDF--NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEIN-QPEKLVKMQKL 124
            +   N  +LR L+L S+K   +    F  L +L  L L    + +   +      ++ L
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 125 TVLDLSNNNIRKIPYELGLAQ--QLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
           T LDLS N IR +       +   L  ++   N      +  L+      LS+  
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 3e-18
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETIDI 69
            LS N+L  +        +   + LS N ++NL     LL + HL  + L  N+  +   
Sbjct: 387 FLSGNKLVTLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 70  DFNFG---HLRELNLSSNKFQQIPKCIF------HLDNLEILILNNNDIEEINQPEKLVK 120
           D        L +L L  N  Q   +          L +L++L LN+N +  +  P     
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGVFSH 502

Query: 121 MQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSY 175
           +  L  L L++N +  + +   L   L  L++  N    P  D+    +   +++
Sbjct: 503 LTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 3e-16
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 17/158 (10%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           DL  N L    + +  I SI ++ LS N +  LP   L    +   +L  N+LE +DI +
Sbjct: 368 DLRDNAL----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLI---HLSENRLENLDILY 420

Query: 72  NFG---HLRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDIEEINQ----PEKLVKMQ 122
                 HL+ L L+ N+F             +LE L L  N ++   +     +    + 
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 123 KLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY 159
            L VL L++N +  +P         L  L+L  N    
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 3e-16
 Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 27/171 (15%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETID- 68
           +LSYN L  + S  F  +  +  +DL  N I  +       L  L  ++L +N L TI  
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF 379

Query: 69  ----------------IDFNFGHLRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDIE 110
                           +         ++LS N+ + +    F   + +L+ILILN N   
Sbjct: 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 111 EINQPEKLVKMQKLTVLDLSNNNIRKIPYE------LGLAQQLHHLNLVGN 155
             +  +   +   L  L L  N ++                 L  L L  N
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 30/176 (17%)

Query: 12  DLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPPDL---LNLRHLVYMNLENNKLET 66
           DLS N++  +        + S++ +D S N I  +       L  + L + +L  N L +
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 67  IDID--------FNFGHLRELNLSSNKFQQIPKCIFH-------------LDNLEILILN 105
                       F    L  L++S N +       F                ++      
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 106 NNDIEEINQP--EKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFK 158
            ++I++ +Q     L +   +  LDLS+  +  +        + L  LNL  N   
Sbjct: 249 FHNIKDPDQNTFAGLARSS-VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 12  DLSYNRLHVVNSKLFD------ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL 64
            L  N L +             ++ ++ L L+HN + +LPP +  +L  L  ++L +N+L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 65  ETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
             +  +    +L  L++S N+       +F   +L +L + +N      +    +     
Sbjct: 517 TVLSHNDLPANLEILDISRNQLLAPNPDVFV--SLSVLDITHNKFICECELSTFINWLNH 574

Query: 125 TVLDLSNN 132
           T + ++  
Sbjct: 575 TNVTIAGP 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 11/134 (8%)

Query: 32  RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQ-Q 88
           R        +  +P  L     L    L  N + T+          L+ L L S      
Sbjct: 7   RIAFYRFCNLTQVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 89  IPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE---LGLA 144
           I K  F  L NL IL L ++ I  +  P+    +  L  L L    +     +       
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 145 QQLHHLNLVGNCFK 158
           + L  L+L  N  +
Sbjct: 123 KALTRLDLSKNQIR 136

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.1 bits (205), Expect = 3e-19
 Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 17/173 (9%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           D   NRL  +        S++ LD+ +N +  LP     L ++   N +NN+L  +    
Sbjct: 106 DACDNRLSTLPE---LPASLKHLDVDNNQLTMLPELPALLEYI---NADNNQLTMLPE-- 157

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT----VL 127
               L  L++ +N+   +P+     ++LE L ++ N +E +  P   V+           
Sbjct: 158 LPTSLEVLSVRNNQLTFLPEL---PESLEALDVSTNLLESL--PAVPVRNHHSEETEIFF 212

Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL 180
               N I  IP  +        + L  N      ++ L + T     +     
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 1e-18
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 18/144 (12%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            L+   L  +   L     I  L+++ N + +LP    +L +L   +  +N+L T+    
Sbjct: 65  QLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYL---DACDNRLSTLPEL- 118

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
               L+ L++ +N+   +P+       LE +  +NN +  +  PE       L VL + N
Sbjct: 119 -PASLKHLDVDNNQLTMLPELP---ALLEYINADNNQLTML--PELP---TSLEVLSVRN 169

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N +  +P        L  L++  N
Sbjct: 170 NQLTFLPELPE---SLEALDVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 1e-12
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 33  ELDLSHNLIQNLPPDLL----NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
             +  +N I     D                  N+  ++  +       EL L+      
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 89  IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLH 148
           +P  +     + +L +  N +  +  PE       L  LD  +N +  +P        L 
Sbjct: 74  LPDNLP--PQITVLEITQNALISL--PELP---ASLEYLDACDNRLSTLPELPA---SLK 123

Query: 149 HLNLVGNCFKY 159
           HL++  N    
Sbjct: 124 HLDVDNNQLTM 134

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.5 bits (154), Expect = 2e-12
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 15/145 (10%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI-DID 70
           +   N+L ++       TS+  L + +N +  LP    +L  L   ++  N LE++  + 
Sbjct: 146 NADNNQLTMLPEL---PTSLEVLSVRNNQLTFLPELPESLEAL---DVSTNLLESLPAVP 199

Query: 71  FNFGHLRE----LNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
               H  E         N+   IP+ I  LD    +IL +N +    +      + + T 
Sbjct: 200 VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES----LSQQTA 255

Query: 127 LDLSNNNIRKIPYELGLAQQLHHLN 151
               +          G    LH   
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPL 280

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 6e-19
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
           +     L  +   L        L LS NL+       L     L  +NL+  +L  + +D
Sbjct: 16  NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73

Query: 71  FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
                L  L+LS N+ Q +P     L  L +L ++ N +  +     L  + +L  L L 
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLK 132

Query: 131 NNNIRKIPYEL--GLAQQLHHLNLVGN 155
            N ++ +P  L      +L  L+L  N
Sbjct: 133 GNELKTLPPGLLTPTP-KLEKLSLANN 158

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 78.2 bits (193), Expect = 6e-18
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 6   AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL 64
            ++ Q +L    L  +   +   +  +  LDLSHN +Q+LP     L  L  +++  N+L
Sbjct: 55  TRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 65  ETIDID-F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKM 121
            ++ +      G L+EL L  N+ + +P  +      LE L L NN++ E+     L  +
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGL 171

Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           + L  L L  N++  IP     +  L    L GN
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.8 bits (192), Expect = 7e-18
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
            LS N L+  +       T + +L+L    +  L  D   L  L  ++L +N+L+++ + 
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-TLPVLGTLDLSHNQLQSLPLL 95

Query: 71  F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
                 L  L++S N+   +P      L  L+ L L  N+++ +  P  L    KL  L 
Sbjct: 96  GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLS 154

Query: 129 LSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           L+NNN+ ++P  L  GL + L  L L  N
Sbjct: 155 LANNNLTELPAGLLNGL-ENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 76  LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135
             E+N        +P  +    +  IL L+ N +        L+   +LT L+L    + 
Sbjct: 12  HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELT 68

Query: 136 KIPYELGLAQQLHHLNLVGN 155
           K+  +  L   L  L+L  N
Sbjct: 69  KLQVDGTLP-VLGTLDLSHN 87

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.7 bits (201), Expect = 1e-18
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
           A+  + +L    +        ++ SI ++  +++ I+++   +  L ++  + L  NKL 
Sbjct: 21  AETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT 78

Query: 66  TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
            I    N  +L  L L  NK + +   +  L  L+ L L +N I +I     LV + +L 
Sbjct: 79  DIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI---NGLVHLPQLE 134

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
            L L NN I  I   L    +L  L+L  N
Sbjct: 135 SLYLGNNKITDIT-VLSRLTKLDTLSLEDN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 7e-15
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 31  IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIP 90
           + E       I+ + PD       +  NL+   +           + ++  +++  + + 
Sbjct: 1   MGETITVSTPIKQIFPDD-AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV- 58

Query: 91  KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHL 150
           + I +L N+  L LN N + +I   + L  ++ L  L L  N I+ +     L ++L  L
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKDLSSLKDL-KKLKSL 114

Query: 151 NLVGN 155
           +L  N
Sbjct: 115 SLEHN 119

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 6e-13
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            L +N +  +N  L  +  +  L L +N I ++   L  L  L  ++LE+N++  I    
Sbjct: 115 SLEHNGISDING-LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLA 172

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
               L+ L LS N    + + +  L NL++L L + +            +     +  ++
Sbjct: 173 GLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN-KPINHQSNLVVPNTVKNTD 230

Query: 132 NNIRKIPY 139
            ++     
Sbjct: 231 GSLVTPEI 238

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.3 bits (201), Expect = 1e-18
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 11/153 (7%)

Query: 12  DLSYNRLHVVNSKLFD---ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI 67
              +      ++  F     + ++  DLS + I  L   +  +   L  + L  N++  I
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 68  DID--FNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKL 124
           D +  +   HL +LNLS N    I   +F  LD LE+L L+ N I  +   +  + +  L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL-GDQSFLGLPNL 373

Query: 125 TVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
             L L  N ++ +P  +   L   L  + L  N
Sbjct: 374 KELALDTNQLKSVPDGIFDRL-TSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 29  TSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSN 84
             +  +DLS N I  L       L+ L ++ +E      +  +  F     L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 85  KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL-VKMQKLTVLDLSNNNIRKIPYELG 142
           +F Q+    F  L NLE+L L   +++           +  L +L L +NNI+KI     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 143 LA--QQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLR 177
               ++ H L+L  N  K   ++ L        + LR
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 36/180 (20%), Positives = 72/180 (40%), Gaps = 14/180 (7%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLI-QNLPPDLL-NLRHLVYMNLENNKLETID 68
           DLS N +  +N   F  +  ++ L +        +  +    L  L+ + L+ N+   ++
Sbjct: 36  DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95

Query: 69  IDF--NFGHLRELNLSSNKFQ--QIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQK 123
                   +L  L L+        +    F  L +LE+L+L +N+I++I      + M++
Sbjct: 96  TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155

Query: 124 LTVLDLSNNNIRKIPYEL---GLAQQLHHLNLVGNCFKYPRQ---DILQKGTPFLLSYLR 177
             VLDL+ N ++ I  E       +    L L     +   +      + G PF  + + 
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           DLS +++  +   +F   T + +L L+ N I  +  +    L HL+ +NL  N L +ID 
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID- 339

Query: 70  DFNF---GHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
              F     L  L+LS N  + +    F  L NL+ L L+ N ++ +       ++  L 
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQ 398

Query: 126 VLDLSNNN 133
            + L  N 
Sbjct: 399 KIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 24/166 (14%)

Query: 12  DLSYNRLHVVNSKLFD----ITSIRELDLSHNLIQNLPPDLLNLRHL---VYMNLENNKL 64
           DLS N      +K F      T I+ L LS++          N +      +  LE + +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

Query: 65  ETIDIDFN------------FGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEE 111
           +T D+  +            F  L +L L+ N+  +I    F  L +L  L L+ N +  
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 112 INQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           I        + KL VLDLS N+IR +  +   GL   L  L L  N
Sbjct: 338 I-DSRMFENLDKLEVLDLSYNHIRALGDQSFLGL-PNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 9e-10
 Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 33/176 (18%)

Query: 12  DLSYNRLHVVNSK-LFD-ITSIRELDLSHNLIQNLPPDL---LNLRHLVYMNLENNKLET 66
            L  N +  +     F  +     LDL+ N ++++  +       +H   + L +  L+ 
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194

Query: 67  IDID----------FNFGHLRELNLSSNKFQQIPKCIFH----LDNLEILILNNNDIEEI 112
           ++            F    +  L+LS N F++     F        ++ LIL+N+     
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 113 NQPEKLVK-----------MQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           +      K              +   DLS + I  +   +       L  L L  N
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQN 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.3 bits (199), Expect = 1e-18
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 6/144 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           +L+ N++  ++  L ++  +  L +  N I ++   L NL +L  + L  + +  I    
Sbjct: 72  NLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISPLA 129

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N   +  LNL +N        + ++  L  L +  + ++++     +  +  L  L L+ 
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNY 186

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N I  I   L     LH+     N
Sbjct: 187 NQIEDIS-PLASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.9 bits (198), Expect = 3e-18
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
           A+  +A L    +  V +   ++ SI +L ++   + ++   +  L +L Y+NL  N++ 
Sbjct: 22  AEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT 79

Query: 66  TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
            I    N   L  L + +NK   I   + +L NL  L LN ++I +I     L  + K+ 
Sbjct: 80  DISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI---SPLANLTKMY 135

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
            L+L  N+       L     L++L +  +
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 9e-17
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 5/144 (3%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
               N++  +   + ++T +  L + +N I +L P L NL  L ++ +  N++  I+   
Sbjct: 205 TAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVK 262

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           +   L+ LN+ SN+   I   + +L  L  L LNNN +   +  E +  +  LT L LS 
Sbjct: 263 DLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQ 320

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N+I  I   L    ++   +    
Sbjct: 321 NHITDIR-PLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 4e-16
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            L+YN++  ++  L  +TS+       N I ++ P + N+  L  + + NNK+  +    
Sbjct: 183 SLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLA 240

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N   L  L + +N+   I   +  L  L++L + +N I +I     L  + +L  L L+N
Sbjct: 241 NLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNN 296

Query: 132 NNIRKI-PYELGLAQQLHHLNLVGN 155
           N +       +G    L  L L  N
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQN 321

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.0 bits (175), Expect = 3e-15
 Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            +  N++  ++  L +++ +  L++  N I ++   + +L  L  +N+ +N++  I +  
Sbjct: 227 KIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISVLN 284

Query: 72  NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
           N   L  L L++N+      + I  L NL  L L+ N I +I     L  + K+   D +
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI---RPLASLSKMDSADFA 341

Query: 131 NNNIRK 136
           N  I+K
Sbjct: 342 NQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 3e-14
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 7/144 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
                 ++ +     D+       L    + ++      L  +  + +   K+ +I    
Sbjct: 6   ATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQGIE 63

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
              +L  LNL+ N+   I   + +L  L  L +  N I +I     L  +  L  L L+ 
Sbjct: 64  YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNE 119

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           +NI  I   L    +++ LNL  N
Sbjct: 120 DNISDIS-PLANLTKMYSLNLGAN 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 3e-13
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 33  ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
            L      I  + P   +L   +   L+   +  +        + +L ++  K   I   
Sbjct: 4   TLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG- 61

Query: 93  IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
           I +L NLE L LN N I +I     L  + KLT L +  N I  I   L     L  L L
Sbjct: 62  IEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117

Query: 153 VGN 155
             +
Sbjct: 118 NED 120

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 77.8 bits (192), Expect = 3e-18
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 6/132 (4%)

Query: 29  TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID-FN-FGHLRELNLSSNK 85
            +I E+ L  N I+ +PP      + L  ++L NN++  +  D F     L  L L  NK
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 86  FQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGL 143
             ++PK +F  L +L++L+LN N I  + + +    +  L +L L +N ++ I       
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 144 AQQLHHLNLVGN 155
            + +  ++L  N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 6/132 (4%)

Query: 6   AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNK 63
             + +  L  N + V+    F     +R +DLS+N I  L PD    LR L  + L  NK
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 64  LETIDID-F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVK 120
           +  +    F     L+ L L++NK   +    F  L NL +L L +N ++ I        
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSP 150

Query: 121 MQKLTVLDLSNN 132
           ++ +  + L+ N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 13/119 (10%)

Query: 42  QNLPPDLLNLRHLVYMNLENNKLETI-DIDF-NFGHLRELNLSSNKFQQIPKCIF-HLDN 98
            NLP  +  +R      LE N ++ I    F  +  LR ++LS+N+  ++    F  L +
Sbjct: 28  TNLPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 99  LEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           L  L+L  N I E+        +  L +L L+ N I  +  +    L   L+ L+L  N
Sbjct: 82  LNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSLYDN 138

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 82  SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL 141
                 +IP  +   + +  + L  N I+ I  P      +KL  +DLSNN I ++  + 
Sbjct: 19  RGKGLTEIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDA 75

Query: 142 --GLAQQLHHLNLVGN 155
             GL + L+ L L GN
Sbjct: 76  FQGL-RSLNSLVLYGN 90

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 79.8 bits (196), Expect = 4e-18
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 10  QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
             DL    L   +    +   +R L L+H  +  L   L  L  + +++L +N+L  +  
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP 480

Query: 70  DF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
                  L  L  S N  + +   + +L  L+ L+L NN +++    + LV   +L +L+
Sbjct: 481 ALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539

Query: 129 LSNNNIRKIP-YELGLAQQLHHL 150
           L  N++ +    +  LA+ L  +
Sbjct: 540 LQGNSLCQEEGIQERLAEMLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.3 bits (179), Expect = 1e-15
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 35  DLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIF 94
           DL    +       +    +  ++L +  L  +        +  L+LS N+ + +P  + 
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA 483

Query: 95  HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLHHLNL 152
            L  LE+L  ++N +E +   + +  + +L  L L NN +++      L    +L  LNL
Sbjct: 484 ALRCLEVLQASDNALENV---DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 153 VGN 155
            GN
Sbjct: 541 QGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 7e-10
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
             V   DLS+NRL  +   L  +  +  L  S N ++N+   + NL  L  + L NN+L+
Sbjct: 463 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ 521

Query: 66  TIDIDFNFGH---LRELNLSSNKFQQIP----KCIFHLDNLEILI 103
                        L  LNL  N   Q      +    L ++  ++
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 10/154 (6%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
             S   L+ + S L    +++ LDLS+N I  +    L    +L  + L +N + TI+ D
Sbjct: 37  KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 71  --FNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
              + G L  L+LS N    +    F  L +L  L L  N  + + +      + KL +L
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 128 DLSNNN-IRKIPYEL--GLAQQLHHLNLVGNCFK 158
            + N +   KI  +   GL   L  L +  +  +
Sbjct: 155 RVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQ 187

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 38/182 (20%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPP------------------------ 46
           DLSYN L  ++S  F  ++S+  L+L  N  + L                          
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 47  ---DLLNLRHLVYMNLENNKLETIDID--FNFGHLRELNLSSNKFQQIPKCIF-HLDNLE 100
              D   L  L  + ++ + L++ +     +  ++  L L   +   + +       ++E
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 101 ILILNNNDIEEINQPE-------KLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLV 153
            L L + D++  +  E        L+K      + +++ ++ ++   L     L  L   
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 154 GN 155
            N
Sbjct: 286 RN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 13/136 (9%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI-- 67
           ++  + L     K    I ++  L L       L    +     +  + L +  L+T   
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 68  ----DIDFN----FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV 119
                 + N        R + ++     Q+ K +  +  L  L  + N ++ +       
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV-PDGIFD 298

Query: 120 KMQKLTVLDLSNNNIR 135
           ++  L  + L  N   
Sbjct: 299 RLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 24/158 (15%), Positives = 65/158 (41%), Gaps = 18/158 (11%)

Query: 13  LSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI-DI 69
            + +    +  K F  +T + EL++  + +Q+  P  L +++++ ++ L   +   + +I
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 70  DFN------FGHLRELNLSSNKFQQIPKCIF----HLDNLEILILNNNDIEEINQPEKLV 119
             +         LR+ +L +  F ++                + + +  + ++   + L 
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV--MKLLN 274

Query: 120 KMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           ++  L  L+ S N ++ +P  +   L   L  + L  N
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRL-TSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 7   QVEQADLSYNRLHVVN---------SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYM 57
            VE  +L    L   +         + L    + R + ++   +  +   L  +  L+ +
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282

Query: 58  NLENNKLETIDIDF--NFGHLRELNLSSNKFQ 87
               N+L+++          L+++ L +N + 
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.2 bits (188), Expect = 7e-17
 Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            +S N+L  +   L + + ++ +D+ +N ++ LP    +L  +      NN+LE +    
Sbjct: 137 GVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFI---AAGNNQLEELPELQ 192

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N   L  +   +N  +++P       +LE ++  NN +EE+ +   L  +  LT +   N
Sbjct: 193 NLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELPE---LQNLPFLTTIYADN 246

Query: 132 NNIRKIPYELGLAQQLHHLNL 152
           N ++ +P      + L+  + 
Sbjct: 247 NLLKTLPDLPPSLEALNVRDN 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 15/144 (10%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           +L+   L  +         +  L  S N +  LP    +L+ L+  N     L  +    
Sbjct: 77  ELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---- 129

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
               L  L +S+N+ +++P+ + +   L+I+ ++NN ++++  P+       L  +   N
Sbjct: 130 -PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKL--PDLP---PSLEFIAAGN 182

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N + ++P EL     L  +    N
Sbjct: 183 NQLEELP-ELQNLPFLTAIYADNN 205

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           ++  N L  +        S+  LD+S N+   L     NL +L   N  +N++ ++    
Sbjct: 263 NVRDNYLTDLPE---LPQSLTFLDVSENIFSGLSELPPNLYYL---NASSNEIRSLC--D 314

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
               L ELN+S+NK  ++P        LE LI + N + E+  PE     Q L  L +  
Sbjct: 315 LPPSLEELNVSNNKLIELPALP---PRLERLIASFNHLAEV--PELP---QNLKQLHVEY 366

Query: 132 NNIRKIPYELGLAQQLHHLN 151
           N +R+ P      + L   +
Sbjct: 367 NPLREFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 15/144 (10%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
               N+L  +   L ++  +  +   +N ++ LP   L+L  +      NN LE +    
Sbjct: 179 AAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESI---VAGNNILEELPELQ 234

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N   L  +   +N  + +P       +LE L + +N + ++  PE     Q LT LD+S 
Sbjct: 235 NLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDL--PELP---QSLTFLDVSE 286

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N    +         L++LN   N
Sbjct: 287 NIFSGLSELPP---NLYYLNASSN 307

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 21/164 (12%)

Query: 7   QVEQADLSYNRLHVVNSKLFDITSIRELDLSHN-LIQNLPPDLLNLRHLVYMNLENN--- 62
            +++     + L  +  +  ++ S  E   + +   +N PP     R +    L +    
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 63  KLETIDIDFN--------FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ 114
           +   ++++            HL  L  S N   ++P+    L +L +   N   + ++  
Sbjct: 72  QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL-- 129

Query: 115 PEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
                    L  L +SNN + K+P EL  +  L  +++  N  K
Sbjct: 130 ------PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 20/171 (11%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           + S N +  +        S+ EL++S+N +  LP     L  L       N L  +    
Sbjct: 303 NASSNEIRSLCDLP---PSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVPE-- 354

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
              +L++L++  N  ++ P       ++E L +N++  E    P      Q L  L +  
Sbjct: 355 LPQNLKQLHVEYNPLREFPDIPE---SVEDLRMNSHLAEVPELP------QNLKQLHVET 405

Query: 132 NNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKLPS 182
           N +R+ P        +  L +       P +   +                
Sbjct: 406 NPLREFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 13/129 (10%)

Query: 29  TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
           T ++E     + +  +P +  N++         ++ E                      +
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERN------APPGNGEQREMAVSR 64

Query: 89  IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLH 148
           +  C+        L LNN  +  +  PE       L  L  S N++ ++P      + L 
Sbjct: 65  LRDCL--DRQAHELELNNLGLSSL--PELP---PHLESLVASCNSLTELPELPQSLKSLL 117

Query: 149 HLNLVGNCF 157
             N      
Sbjct: 118 VDNNNLKAL 126

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.9 bits (182), Expect = 8e-17
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 9/134 (6%)

Query: 29  TSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETIDID-FN-FGHLRELNLSSN 84
               EL L++N    L    +   L  L  +N  NNK+  I+   F     + E+ L+SN
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 85  KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL-- 141
           + + +   +F  L++L+ L+L +N I  +   +  + +  + +L L +N I  +      
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 142 GLAQQLHHLNLVGN 155
            L   L  LNL+ N
Sbjct: 151 TL-HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 4e-13
 Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           + S N++  +    F+  + + E+ L+ N ++N+   +   L  L  + L +N++  +  
Sbjct: 63  NFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122

Query: 70  D-F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNN 107
           D F     +R L+L  N+   +    F  L +L  L L  N
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 43  NLPPDLLNLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSNKFQQIPKCIF-HLDN 98
           ++P     LR      L NN+   ++    F     LR++N S+NK   I +  F     
Sbjct: 29  HIPQYTAELR------LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 99  LEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           +  ++L +N +E + Q +    ++ L  L L +N I  +  +   GL   +  L+L  N
Sbjct: 83  VNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 82  SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL 141
           S+ K  +IP+ I        L LNNN+   +       K+ +L  ++ SNN I  I    
Sbjct: 19  SNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 142 --GLAQQLHHLNLVGN 155
             G +  ++ + L  N
Sbjct: 77  FEGAS-GVNEILLTSN 91

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.8 bits (187), Expect = 9e-17
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 7/144 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           D+S N++  ++  L  +T++  L  ++N I ++ P L  L +L  ++L  N+L+ I    
Sbjct: 183 DISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLA 240

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           +  +L +L+L++N+   +   +  L  L  L L  N I  I     L  +  LT L+L+ 
Sbjct: 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNE 296

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N +  I   +   + L +L L  N
Sbjct: 297 NQLEDIS-PISNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 2e-16
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 8/144 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           + S N+L  + + L ++T + ++ +++N I ++ P L NL +L  + L NN++  ID   
Sbjct: 74  NFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK 131

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N  +L  L LSSN    I   +  L +L+ L   N     +   + L  +  L  LD+S+
Sbjct: 132 NLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ----VTDLKPLANLTTLERLDISS 186

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N +  I   L     L  L    N
Sbjct: 187 NKVSDIS-VLAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
           A+  +  L    +    S   D+  +  L      I+++   +  L +L  +N  NN+L 
Sbjct: 24  AEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLT 81

Query: 66  TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
            I    N   L ++ +++N+   I   + +L NL  L L NN I +I   + L  +  L 
Sbjct: 82  DITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDI---DPLKNLTNLN 137

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNL 152
            L+LS+N I  I   L     L  L+ 
Sbjct: 138 RLELSSNTISDIS-ALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           DL+ N++  + + L  +T + EL L  N I N+ P L  L  L  + L  N+LE I    
Sbjct: 249 DLANNQISNL-APLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 306

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N  +L  L L  N    I   +  L  L+ L   NN + +++    L  +  +  L   +
Sbjct: 307 NLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGH 362

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N I  +   L    ++  L L   
Sbjct: 363 NQISDLT-PLANLTRITQLGLNDQ 385

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 8/144 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           +LS N +  +++ L  +TS+++L   + +    P  L NL  L  +++ +NK+  I +  
Sbjct: 140 ELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLA 196

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
              +L  L  ++N+   I   +  L NL+ L LN N +++I     L  +  LT LDL+N
Sbjct: 197 KLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLAN 252

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N I  +   L    +L  L L  N
Sbjct: 253 NQISNLA-PLSGLTKLTELKLGAN 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 9e-15
 Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            L  N++  + S L  +T++  L+L+ N ++++ P + NL++L Y+ L  N +  I    
Sbjct: 271 KLGANQISNI-SPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVS 328

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           +   L+ L   +NK   +   + +L N+  L   +N I ++     L  + ++T L L++
Sbjct: 329 SLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLND 384

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
                 P        +   N V N
Sbjct: 385 QAWTNAPVNYK--ANVSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 5/144 (3%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           +L+ N+L  ++  + ++ ++  L L  N I ++ P + +L  L  +   NNK+  +    
Sbjct: 293 ELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSLA 350

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N  ++  L+   N+   +   + +L  +  L LN+        P        +     + 
Sbjct: 351 NLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNA--PVNYKANVSIPNTVKNV 407

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
                 P  +         ++  N
Sbjct: 408 TGALIAPATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 18/127 (14%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            L +N +  ++  +  +T ++ L   +N + ++   L NL ++ +++  +N++  +    
Sbjct: 315 TLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 372

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N   + +L L+   +   P       ++   + N      +  P  +      T  D++ 
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT--GALIAPATISDGGSYTEPDITW 430

Query: 132 NNIRKIP 138
           N      
Sbjct: 431 NLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 6/123 (4%)

Query: 33  ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
                   I  +  D   L   +   L    +       +   +  L       + I   
Sbjct: 6   ATITQDTPINQIFTDT-ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG- 63

Query: 93  IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
           + +L+NL  +  +NN + +I     L  + KL  + ++NN I  I   L     L  L L
Sbjct: 64  VEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL 119

Query: 153 VGN 155
             N
Sbjct: 120 FNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 2/97 (2%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
              +N++  +   L ++T I +L L+     N P +   N+     +      L      
Sbjct: 359 SAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

Query: 71  FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
            + G   E +++ N      +  +       +     
Sbjct: 418 SDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.7 bits (186), Expect = 1e-16
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 11  ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
            D S N L  V   L        L++S N I  L   D+L+L  L  + + +N+++ +DI
Sbjct: 5   VDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 70  D-FNF-GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
             F F   L  L+LS NK  +I        NL+ L L+ N  + +   ++   M +L  L
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGN 155
            LS  ++ K          +  + LV  
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLG 148

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.4 bits (167), Expect = 5e-14
 Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 12  DLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
           + + +   +V+       +    LD S+NL+ +   +   +L  L  + L+ N+L+ +  
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 70  DFNFGH----LRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDIEEINQPEKLVKMQK 123
                     L++L++S N      K        +L  L +++N + +      L    +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCL--PPR 422

Query: 124 LTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           + VLDL +N I+ IP ++   + L  LN+  N
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 11/152 (7%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD---LLNLRHLVYMNLENNKLETI 67
           D S N L     +    +T +  L L  N ++ L         ++ L  +++  N +   
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 68  DIDFNFGH---LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL 124
           +   +      L  LN+SSN              +++L L++N I+ I  P+++VK++ L
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSI--PKQVVKLEAL 446

Query: 125 TVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
             L++++N ++ +P         L  + L  N
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 12  DLSYNRLHVVN--SKLFD-ITSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLET 66
            L  N+L  ++  +++   + S+++LD+S N +            + L+ +N+ +N L  
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 67  IDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
                    ++ L+L SNK + IPK +  L+ L+ L + +N ++ +       ++  L  
Sbjct: 414 TIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP-DGIFDRLTSLQK 472

Query: 127 LDLSNNN 133
           + L  N 
Sbjct: 473 IWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 21/151 (13%), Positives = 62/151 (41%), Gaps = 8/151 (5%)

Query: 12  DLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDI 69
            +  +      S +++I +++   + + +  + +     + +   ++++  NN L     
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 70  DF--NFGHLRELNLSSNKFQQIPKCIF---HLDNLEILILNNNDIEEINQPEKLVKMQKL 124
           +   +   L  L L  N+ +++ K       + +L+ L ++ N +    +       + L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
             L++S+N +    +   L  ++  L+L  N
Sbjct: 402 LSLNMSSNILTDTIFR-CLPPRIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 8e-11
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 12/164 (7%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDI 69
            +S+NR+  ++  +F     +  LDLSHN +  +     +NL+HL   +L  N  + + I
Sbjct: 51  IISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHL---DLSFNAFDALPI 107

Query: 70  DFNFGH---LRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL--VKMQK 123
              FG+   L+ L LS+   ++       HL+  ++L++      E   PE L     + 
Sbjct: 108 CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167

Query: 124 LTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQ 166
           L ++  +N     I    +     L   N+            L 
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 9e-09
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 7/135 (5%)

Query: 28  ITSIRELDLSHNLIQNLPPDL-LNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSN 84
           + ++    +  ++       +     ++   N   +    + +           L+ S+N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 85  KFQQIPKCIFH-LDNLEILILNNNDIEEI-NQPEKLVKMQKLTVLDLSNNNIRKIPYELG 142
                       L  LE LIL  N ++E+    E   +M+ L  LD+S N++     +  
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 143 LAQ--QLHHLNLVGN 155
            +    L  LN+  N
Sbjct: 395 CSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           ++S N L     +      I+ LDL  N I+++P  ++ L  L  +N+ +N+L+++    
Sbjct: 405 NMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463

Query: 72  --NFGHLRELNLSSNKFQ 87
                 L+++ L +N + 
Sbjct: 464 FDRLTSLQKIWLHTNPWD 481

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 2   IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
            A    +         +  +   +  + ++  L+L  N I +L P L NL  +  + L  
Sbjct: 37  QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG 94

Query: 62  NKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
           N L+ +        ++ L+L+S +   +   +  L NL++L L+ N I  I     L  +
Sbjct: 95  NPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI---SPLAGL 150

Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
             L  L + N  +  +   L    +L  L    N
Sbjct: 151 TNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
           A   +     + +        D+  I  L      +  +   +  L +L+ + L++N++ 
Sbjct: 19  ANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQIT 76

Query: 66  TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
            +    N   + EL LS N  + +   I  L +++ L L +  I ++     L  +  L 
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQ 132

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           VL L  N I  I   L     L +L++   
Sbjct: 133 VLYLDLNQITNIS-PLAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 36  LSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFH 95
                I  + PD   L + + +    + +       +   +  L+        I   + +
Sbjct: 4   TQPTAINVIFPDP-ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQY 61

Query: 96  LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           L+NL  L L +N I ++     L  + K+T L+LS N ++ +   +   Q +  L+L   
Sbjct: 62  LNNLIGLELKDNQITDL---APLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            +   ++  + + L +++ +  L    N I ++ P L +L +L+ ++L+NN++  +    
Sbjct: 157 SIGNAQVSDL-TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLA 214

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N  +L  + L++      P  +F+ +NL +  +          P  +         +L+ 
Sbjct: 215 NTSNLFIVTLTNQTITNQP--VFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272

Query: 132 NNIRKIP 138
           N    I 
Sbjct: 273 NLTSFIN 279

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 17/155 (10%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-- 67
           DL  N+L  + SK F  +T +R L L+ N +Q LP  +   L++L  + + +NKL+ +  
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102

Query: 68  DIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPE----KLVKMQ 122
            +     +L EL L  N+ + +P  +F  L  L  L L  N+++ +  P+    KL    
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL--PKGVFDKLT--- 157

Query: 123 KLTVLDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
            L  L L NN ++++P      L  +L  L L  N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKL-TELKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
           D S  +L  + S +      ++LDL  N + +LP      L  L  + L +NKL+T+   
Sbjct: 22  DCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 71  -FN-FGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKL-VKMQKLTV 126
            F    +L  L ++ NK Q +P  +F  L NL  L L+ N ++ +  P ++   + KLT 
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL--PPRVFDSLTKLTY 137

Query: 127 LDLSNNNIRKIPYEL--GLAQQLHHLNLVGN 155
           L L  N ++ +P  +   L   L  L L  N
Sbjct: 138 LSLGYNELQSLPKGVFDKLT-SLKELRLYNN 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 5e-16
 Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 7/155 (4%)

Query: 7   QVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKL 64
           ++    L+ N+L  + + +F  + ++  L ++ N +Q LP  +   L +L  + L+ N+L
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 65  ETIDID-F-NFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKM 121
           +++    F +   L  L+L  N+ Q +PK +F  L +L+ L L NN ++ +       K+
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKL 180

Query: 122 QKLTVLDLSNNNIRKIPYEL-GLAQQLHHLNLVGN 155
            +L  L L NN ++++P       ++L  L L  N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.0 bits (177), Expect = 5e-16
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 29  TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNL-ENNKLETIDID--FNFGHLRELNLSSN 84
            S + L L    ++ +P     NL ++  + +  +  L+ ++    +N   +  + + + 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 85  KF-QQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN-IRKIPYEL 141
           +    I       L  L+ L + N  ++      K+       +L++++N  +  IP   
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 142 --GLAQQLHHLNLVGNCFK 158
             GL  +   L L  N F 
Sbjct: 151 FQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 22/154 (14%), Positives = 57/154 (37%), Gaps = 13/154 (8%)

Query: 12  DLSYNR-LHVVNSKLFD-ITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNL-ENNKLET 66
           ++   R L  ++      +  ++ L + +  ++  P    + +      + + +N  + +
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 67  IDID-FN--FGHLRELNLSSNKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLVKM- 121
           I ++ F         L L +N F  +    F+   L+ + L  N  +  I   +    + 
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVY 204

Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
              ++LD+S  ++  +P      + L  L     
Sbjct: 205 SGPSLLDVSQTSVTALPS--KGLEHLKELIARNT 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
           A+  + +L    +        ++ SI ++  +++ I+++   +  L ++  + L  NKL 
Sbjct: 24  AETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT 81

Query: 66  TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
            I    N  +L  L L  NK + +   +  L  L+ L L +N I +I     LV + +L 
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLE 137

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
            L L NN I  I   L    +L  L+L  N
Sbjct: 138 SLYLGNNKITDIT-VLSRLTKLDTLSLEDN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 7/154 (4%)

Query: 2   IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
             +   ++Q   + + +  V   +  + ++ +L L+ N + ++ P L NL++L ++ L+ 
Sbjct: 42  QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE 99

Query: 62  NKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKM 121
           NK++ +    +   L+ L+L  N    I   + HL  LE L L NN I +I     L ++
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI---TVLSRL 155

Query: 122 QKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
            KL  L L +N I  I   L    +L +L L  N
Sbjct: 156 TKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)

Query: 9   EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETID 68
               L  N++  ++S L D+  ++ L L HN I ++   L++L  L  + L NNK+  I 
Sbjct: 93  GWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT 150

Query: 69  IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
           +      L  L+L  N+   I   +  L  L+ L L+ N I ++     L  ++ L VL+
Sbjct: 151 VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLE 206

Query: 129 LSNNNIRKIPYE 140
           L +      P  
Sbjct: 207 LFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            L+ N+L  +   L ++ ++  L L  N +++L   L +L+ L  ++LE+N +  I+   
Sbjct: 74  FLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLV 131

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           +   L  L L +NK   I   +  L  L+ L L +N I +I     L  + KL  L LS 
Sbjct: 132 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYLSK 187

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N+I  +   L   + L  L L   
Sbjct: 188 NHISDLR-ALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 33  ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
           E       I+ +  D       +  NL+   +           + ++  +++  + + + 
Sbjct: 6   ETITVPTPIKQIFSDD-AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QG 63

Query: 93  IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
           I +L N+  L LN N + +I   + L  ++ L  L L  N ++ +     L ++L  L+L
Sbjct: 64  IQYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSSLKDL-KKLKSLSL 119

Query: 153 VGN 155
             N
Sbjct: 120 EHN 122

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            L  N++  + + L  +T +  L L  N I ++ P L  L  L  + L  N +  +    
Sbjct: 140 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALA 197

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
              +L  L L S +    P  I H  NL +     N    +  PE +         ++  
Sbjct: 198 GLKNLDVLELFSQECLNKP--INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 255

Query: 132 NNI 134
           +  
Sbjct: 256 HLP 258

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 2e-15
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 7/145 (4%)

Query: 11  ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI 69
            D S   L  V   L      + L LS N I  L   D+  L  L  + L +N++ ++D 
Sbjct: 36  VDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93

Query: 70  D-FNF-GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
             F F   L  L++S N+ Q I      + +L  L L+ ND + +   ++   + KLT L
Sbjct: 94  HVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151

Query: 128 DLSNNNIRKIPYELGLAQQLHHLNL 152
            LS    R++         L  + L
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILL 176

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.4 bits (167), Expect = 4e-14
 Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 15/156 (9%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPD---LLNLRHLVYMNLENNKLETI 67
           + + N       +    +  ++ L L  N ++N         N+  L  +++  N L + 
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 68  DIDFNFG---HLRELNLSSNKFQQIPKCIFH--LDNLEILILNNNDIEEINQPEKLVKMQ 122
             D        +  LNLSSN    +   +F      +++L L+NN I  I  P+ +  +Q
Sbjct: 419 AYDRTCAWAESILVLNLSSN---MLTGSVFRCLPPKVKVLDLHNNRIMSI--PKDVTHLQ 473

Query: 123 KLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCF 157
            L  L++++N ++ +P         L ++ L  N +
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.0 bits (166), Expect = 6e-14
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 11/161 (6%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNK 63
           A++    LS +    ++       +S   L+ + N+  +        L+ L  + L+ N 
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 64  LETIDIDFN-FGHLRELNLSSNKFQQIPKCIFH-----LDNLEILILNNNDIEEINQPEK 117
           L+          ++  L         +    +       +++ +L L++N +   +    
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-SVFRC 447

Query: 118 LVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
           L    K+ VLDL NN I  IP ++   Q L  LN+  N  K
Sbjct: 448 LP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 10/177 (5%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID 70
            LS+NR+  ++  +F     +  LD+SHN +QN+      +  L +++L  N  + + + 
Sbjct: 82  RLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVC 139

Query: 71  FNFG---HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
             FG    L  L LS+ KF+Q+        +L  ++L+           + +++   TVL
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 128 DLSNNNIRKIPYELGLA----QQLHHLNLVGNCFKYPRQDILQKGTPFLLSYLRDKL 180
            L  +       ++ ++      L   N+  N     R            + L   L
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 8e-07
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 7/135 (5%)

Query: 28  ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDI--DFNFGHLRELNLSSN 84
           + S+    + + +       L +    +    L  +    I +    +      LN + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 85  KFQQIPKCIFH-LDNLEILILNNNDIEEI-NQPEKLVKMQKLTVLDLSNNNIRKIPYEL- 141
            F          L  L+ LIL  N ++           M  L  LD+S N++    Y+  
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 142 -GLAQQLHHLNLVGN 155
              A+ +  LNL  N
Sbjct: 424 CAWAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 12  DLSYNRLHVVNSKLFD--ITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI 69
           +LS N L      +F      ++ LDL +N I ++P D+ +L+ L  +N+ +N+L+++  
Sbjct: 434 NLSSNMLT---GSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490

Query: 70  DF--NFGHLRELNLSSNKFQ 87
                   L+ + L  N + 
Sbjct: 491 GVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 78  ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
            ++ S+     +PK +      + L L+ N I E+ +   +  + +L VL LS+N IR +
Sbjct: 35  MVDYSNRNLTHVPKDL--PPRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSL 91

Query: 138 PYEL--GLAQQLHHLNLVGN 155
            + +     Q L +L++  N
Sbjct: 92  DFHVFLFN-QDLEYLDVSHN 110

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 23  SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
           ++  +    RELDL    I  +      L     ++  +N++  +D       L+ L ++
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN 72

Query: 83  SNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY 139
           +N+  +I + +   L +L  LIL NN + E+   + L  ++ LT L +  N +    +
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.1 bits (146), Expect = 7e-12
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 57  MNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPE 116
           + L    +E      N    REL+L   K   I      LD  + +  ++N+I ++   +
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---D 58

Query: 117 KLVKMQKLTVLDLSNNNIRKIPYELGLA-QQLHHLNLVGNC 156
               +++L  L ++NN I +I   L  A   L  L L  N 
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 2   IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLEN 61
           +A EA+  +       +  +++ L  + + + L LS N I+ +   L  + +L  ++L  
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGR 79

Query: 62  NKLETID-IDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVK 120
           N ++ I+ +D     L EL +S N+   +   I  L NL +L ++NN I    + +KL  
Sbjct: 80  NLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 121 MQKLTVLDLSNNNIRKIPYE 140
           + KL  L L+ N +     E
Sbjct: 139 LDKLEDLLLAGNPLYNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 78  ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI 137
           EL+      +++   +  L   + L L+ N+IE+I     L  M+ L +L L  N I+KI
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---SSLSGMENLRILSLGRNLIKKI 85

Query: 138 PYELGLAQQLHHLNLVGN 155
                +A  L  L +  N
Sbjct: 86  ENLDAVADTLEELWISYN 103

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            LS N +  + S L  + ++R L L  NLI+ +         L  + +  N++ ++    
Sbjct: 54  ALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 112

Query: 72  NFGHLRELNLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
              +LR L +S+NK         +  LD LE L+L  N +    +        ++ V+
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.2 bits (172), Expect = 7e-15
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 12/153 (7%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNK-LETIDI 69
               +++  + S L    +  EL      ++ +          L  + +  N  LE I+ 
Sbjct: 15  LCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72

Query: 70  D--FNFGHLRELNLS-SNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
           D   N   L E+ +  +N    I    F +L NL+ L+++N  I+ +      +   +  
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKV 131

Query: 126 VLDLS-NNNIRKIPYEL--GLAQQLHHLNLVGN 155
           +LD+  N NI  I      GL+ +   L L  N
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 1e-14
 Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 13  LSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDL-LNLRHLVYMNL-ENNKLETIDI 69
              N L  +N + F  + +++ L +S+  I++LP    ++    V +++ +N  + TI+ 
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE- 145

Query: 70  DFNFGHL----RELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKL 124
             +F  L      L L+ N  Q+I    F+     E+ + +NN++EE+   +        
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL-PNDVFHGASGP 204

Query: 125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
            +LD+S   I  +P      + L  L     
Sbjct: 205 VILDISRTRIHSLP--SYGLENLKKLRARST 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 20/99 (20%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSH-NLIQNLPPDLL-NLRHLVYMNLENNKLETIDI 69
            L+ N +  +++  F+ T + EL+LS  N ++ LP D+       V +++   ++ ++  
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP- 218

Query: 70  DFNFGHLRELN-LSSNKFQQIPKCIFHLDNLEILILNNN 107
            +   +L++L   S+   +++P  +  L  L    L   
Sbjct: 219 SYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.9 bits (172), Expect = 7e-15
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 29  TSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-TIDIDF-NFGHLRELNLSSNK 85
           T +  L ++H  +   +P  L  ++ LV ++   N L  T+     +  +L  +    N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 86  FQ-QIPKCIFHLDNL-EILILNNNDIE-EINQPEKLVKMQKLTVLDLSNNNIR-KIPYEL 141
               IP        L   + ++ N +  +I  P     +  L  +DLS N +        
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 142 GLAQQLHHLNLVGNCF 157
           G  +    ++L  N  
Sbjct: 218 GSDKNTQKIHLAKNSL 233

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.9 bits (167), Expect = 4e-14
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 20/163 (12%)

Query: 7   QVEQADLSYNRLH---VVNSKLFDITSIRELDLSH--NLIQNLPPDLLNLRHLVYMNLEN 61
           +V   DLS   L     + S L ++  +  L +    NL+  +PP +  L  L Y+ + +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 62  NKL-----ETIDIDFNFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQ 114
             +     + +        L  L+ S N     +P  I  L NL  +  + N I   I  
Sbjct: 111 TNVSGAIPDFLS---QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-- 165

Query: 115 PEKLVKMQKL-TVLDLSNNNIR-KIPYELGLAQQLHHLNLVGN 155
           P+      KL T + +S N +  KIP        L  ++L  N
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 15/153 (9%)

Query: 12  DLSYNRLH-VVNSKLFDITS-IRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLETID 68
               NR+   +       +     + +S N +   +PP   NL +L +++L  N L   D
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML-EGD 212

Query: 69  IDFNFG---HLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIE-EINQPEKLVKMQK 123
               FG   + ++++L+ N     + K +    NL  L L NN I   +  P+ L +++ 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL--PQGLTQLKF 269

Query: 124 LTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGN 155
           L  L++S NN+  +IP + G  Q+        N
Sbjct: 270 LHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 72  NFGHLRELNLSSNKFQ---QIPKCIFHLDNLEILIL-NNNDIE-EINQPEKLVKMQKLTV 126
               +  L+LS         IP  + +L  L  L +   N++   I  P  + K+ +L  
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHY 105

Query: 127 LDLSNNNIR-KIPYELGLAQQLHHLNLVGNCF 157
           L +++ N+   IP  L   + L  L+   N  
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 12  DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE-TIDI 69
           DLS N L    +       + +++ L+ N +      +   ++L  ++L NN++  T+  
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 70  DF-NFGHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNND 108
                  L  LN+S N    +IP+   +L   ++    NN 
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 9e-15
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 12  DLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPP-----DLLNLRHLVYMNLENNKLE 65
            ++       + +   +  ++  LDLS N              L    L  + L N  +E
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 66  TIDIDF-----NFGHLRELNLSSNKFQQIPKCIF--HLDNLEILILNNNDIEEINQPEKL 118
           T              L+ L+LS N  +             L  L L+   ++++  P+ L
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV--PKGL 272

Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYP 160
               KL+VLDLS N + + P    L  Q+ +L+L GN F   
Sbjct: 273 P--AKLSVLDLSYNRLDRNPSPDEL-PQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 5e-13
 Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 18/165 (10%)

Query: 7   QVEQADLSYNRLHVVNSKLFDI-----TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLE 60
            +   +L        ++ L ++       ++ L ++     N   + +     L  ++L 
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 61  NNKLETID------IDFNFGHLRELNLSSNKFQQIPKCIFHL----DNLEILILNNNDIE 110
           +N                F  L+ L L +   +        L      L+ L L++N + 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 111 EINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           +           +L  L+LS   ++++P   GL  +L  L+L  N
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLPAKLSVLDLSYN 284

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 30/150 (20%), Positives = 72/150 (48%), Gaps = 8/150 (5%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLE 65
           A   + +L    +  +     +++ ++  +  ++ IQ+L   +    +L  ++L +N++ 
Sbjct: 19  ANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQIS 76

Query: 66  TIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT 125
            +    +   L EL+++ N+ + +         L  L L+NN++ +    + L+ ++ L 
Sbjct: 77  DLSPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDT---DSLIHLKNLE 131

Query: 126 VLDLSNNNIRKIPYELGLAQQLHHLNLVGN 155
           +L + NN ++ I   LG   +L  L+L GN
Sbjct: 132 ILSIRNNKLKSIV-MLGFLSKLEVLDLHGN 160

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 11/145 (7%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDID 70
            LS+N++  + S L D+T + EL ++ N ++NL       L  L    L+NN+L   D  
Sbjct: 69  HLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELRDTDSL 124

Query: 71  FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
            +  +L  L++ +NK + I   +  L  LE+L L+ N+I        L +++K+  +DL+
Sbjct: 125 IHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLT 180

Query: 131 NNNIRKIPYELGLAQQLHHLNLVGN 155
                  P  +    +L+  N V +
Sbjct: 181 GQKCVNEP--VKYQPELYITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 23  SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
                + +  + +L    + +L      L  +   N +N+ ++++     F +L+EL+LS
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS 71

Query: 83  SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELG 142
            N+   +   +  L  LE L +N N ++ +N          L+ L L NN +R     L 
Sbjct: 72  HNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSA----CLSRLFLDNNELRDTD-SLI 125

Query: 143 LAQQLHHLNLVGN 155
             + L  L++  N
Sbjct: 126 HLKNLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 7/123 (5%)

Query: 33  ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
           E       I  + P    L + V  NL    +  +        ++  N  ++  Q +   
Sbjct: 1   ESIQRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AG 58

Query: 93  IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
           +    NL+ L L++N I ++     L  + KL  L ++ N ++ +         L  L L
Sbjct: 59  MQFFTNLKELHLSHNQISDL---SPLKDLTKLEELSVNRNRLKNLNGIPSA--CLSRLFL 113

Query: 153 VGN 155
             N
Sbjct: 114 DNN 116

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 4/127 (3%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
            L  N L      L  + ++  L + +N ++++   L  L  L  ++L  N++       
Sbjct: 112 FLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTGGLT 169

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
               +  ++L+  K    P  + +   L I     +       P  +          +  
Sbjct: 170 RLKKVNWIDLTGQKCVNEP--VKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLW 227

Query: 132 NNIRKIP 138
                  
Sbjct: 228 ELPVYTD 234

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 62.8 bits (153), Expect = 5e-13
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 32  RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPK 91
             LD   +    +        +L +++L N  L ++        L++L LS N+      
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 92  CIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY 139
            +   L NL  L L+ N +++I+  E L K++ L  LDL N  +  +  
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 47  DLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNN 106
               +R LV  N ++N  +   +   F +L  L+L +     +   +  L  L+ L L+ 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE 80

Query: 107 NDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLHHLNLVGN 155
           N I          K+  LT L+LS N ++ I     L   + L  L+L   
Sbjct: 81  NRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNK---LETI 67
            L    L  V++ L  +  +++L+LS N I      L   L +L ++NL  NK   + T+
Sbjct: 55  SLINVGLISVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113

Query: 68  DIDFNFGHLRELNLSSNKFQQIP----KCIFHLDNLEILILNNNDIEEI 112
           +       L+ L+L + +   +          L  L  L   + + +E 
Sbjct: 114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 8/136 (5%)

Query: 9   EQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLET 66
           E+ DL    L  ++   F  +T +  L+L +N +Q L   + + L  L  + L NN+L +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 67  I--DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQ 122
           +   +  +   L +L L  N+ + +P  +F  L  L+ L LN N ++ I  P     K+ 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI--PAGAFDKLT 155

Query: 123 KLTVLDLSNNNIRKIP 138
            L  L LS N ++ +P
Sbjct: 156 NLQTLSLSTNQLQSVP 171

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 29  TSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDFNFGHLRE---LNLSSN 84
               +LDL    +  L       L  L ++NL+ N+L+T+     F  L E   L L++N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANN 93

Query: 85  KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNNNIRKIPYEL- 141
           +   +P  +F HL  L+ L L  N ++ +  P  +  ++ KL  L L+ N ++ IP    
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQLKSL--PSGVFDRLTKLKELRLNTNQLQSIPAGAF 151

Query: 142 -GLAQQLHHLNLVGNCFK 158
             L   L  L+L  N  +
Sbjct: 152 DKL-TNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI-- 67
            L+ N+L  +   +FD +T + +L L  N +++LP  +   L  L  + L  N+L++I  
Sbjct: 89  GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

Query: 68  ---DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNN 107
              D      +L+ L+LS+N+ Q +P   F  L  L+ + L  N
Sbjct: 149 GAFD---KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.0 bits (151), Expect = 7e-13
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 32  RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPK 91
             LD S +    L         L +++  N  L +I        L++L LS N+     +
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLE 81

Query: 92  CIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY 139
            +     NL  L L+ N I++++  E L K++ L  LDL N  +  +  
Sbjct: 82  VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 50  NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
           +++ LV  N  +N+ +   +   F  L  L+  +     I   +  L+ L+ L L++N +
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRV 76

Query: 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLHHLNLVGN 155
                     K   LT L+LS N I+ +     L   + L  L+L   
Sbjct: 77  SGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 62  NKLETIDIDFNFGHLRELNLSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQPEKLV 119
            ++     +     ++EL L +++  +          + LE L   N  +  I     L 
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLP 61

Query: 120 KMQKLTVLDLSNNNIRKIPYELGLA-QQLHHLNLVGNCFK 158
           K+ KL  L+LS+N +      L      L HLNL GN  K
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 29  TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID-F-NFGHLRELNLSSNKF 86
             + EL L  N    +P +L N +HL  ++L NN++ T+    F N   L  L LS N+ 
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 87  QQIPKCIFH-LDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNN 132
           + IP   F  L +L +L L+ NDI  +  PE     +  L+ L +  N
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVV--PEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI--- 67
            L  N+  +V  +L +   +  +DLS+N I  L      N+  L+ + L  N+L  I   
Sbjct: 37  YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96

Query: 68  --DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNN 107
             D       LR L+L  N    +P+  F  L  L  L +  N
Sbjct: 97  TFD---GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 77  RELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK 136
            EL L  N+F  +PK + +  +L ++ L+NN I  +   +    M +L  L LS N +R 
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRC 92

Query: 137 IPYEL--GLAQQLHHLNLVGN 155
           IP     GL + L  L+L GN
Sbjct: 93  IPPRTFDGL-KSLRLLSLHGN 112

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 15/129 (11%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDID 70
            ++        + +  ++++  L +    + +   P+L  L  L  +++ ++  +   + 
Sbjct: 72  TINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 71  F--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
                  +  ++LS N        +  L  L+ L +  + + +      +    KL  L 
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLY 187

Query: 129 LSNNNIRKI 137
             +  I   
Sbjct: 188 AFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 27  DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF 86
            + S+  + L++  + +L   +    ++  + + N      +      +L  L +     
Sbjct: 42  QMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV 100

Query: 87  QQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
                  +  L +L +L ++++   + +   K+  + K+  +DLS N        L    
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAH-DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 146 QLHHLNLVGN 155
           +L  LN+  +
Sbjct: 160 ELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 34  LDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCI 93
             L  +   N+      +  L Y+ L N  +  +       ++++L +++         I
Sbjct: 28  GLLGQSSTANITEA--QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPI 84

Query: 94  FHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNL 152
             L NLE L +   D+        L  +  LT+LD+S++         +    +++ ++L
Sbjct: 85  SGLSNLERLRIMGKDVTSDK-IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 153 VGN 155
             N
Sbjct: 144 SYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 6/107 (5%)

Query: 50  NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
             +  +   L  +    I        L  + L++     +   I +  N++ L +NN   
Sbjct: 21  TFKAYLNGLLGQSSTANITEA-QMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA 78

Query: 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN 155
                   +  +  L  L +   ++       L     L  L++  +
Sbjct: 79  TNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 3e-12
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 14  SYNRLHVVNSKLFDITSIRELDLSHN-LIQNLPP-DLLNLRHLVYMNLENNKLETIDID- 70
           + +        L    ++ EL + +   +Q+L   DL  L  L  + +  + L  +  D 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 71  -FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
                 L  LNLS N  + +        +L+ L+L+ N
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.5 bits (146), Expect = 2e-11
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 75  HLRELNLSSNK-FQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN 132
           +L EL + + +  Q +       L  L  L +  + +  +  P+      +L+ L+LS N
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFN 90

Query: 133 NIRKIPYELGLAQQLHHLNLVGN 155
            +  + ++      L  L L GN
Sbjct: 91  ALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-07
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 77  RELNLSSNKFQQIPKCIFHLDNLEILIL-NNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135
             L  + +        +   +NL  L + N   ++ + +   L  + +L  L +  + +R
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLR 69

Query: 136 KIPYE--LGLAQQLHHLNLVGN 155
            +  +       +L  LNL  N
Sbjct: 70  FVAPDAFHFT-PRLSRLNLSFN 90

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 12  DLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL 64
            +  + L  V    F     +  L+LS N +++L    +    L  + L  N L
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 10/144 (6%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
             ++            + ++  LD  ++ I ++   +  L  L  +   +N + T+D+  
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLDL-S 82

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
              +L  L   SNK   +   +  L  L  L  + N + +++    + +   LT L+ + 
Sbjct: 83  QNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCAR 136

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N + +I   +    QL  L+   N
Sbjct: 137 NTLTEID--VSHNTQLTELDCHLN 158

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           +   N+L  ++        +  L+ + N +  +  D+ +   L  ++   NK  T     
Sbjct: 112 NCDTNKLTKLDVSQN--PLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVT 167

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
               L  L+ S NK  ++   +     L  L  + N+I +++    L +  +LT LD S+
Sbjct: 168 PQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSS 221

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N + +I   +    QL + +   N
Sbjct: 222 NKLTEID--VTPLTQLTYFDCSVN 243

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           + + N L  ++      T + ELD   N       D+     L  ++   NK+  +D+  
Sbjct: 133 NCARNTLTEIDVSHN--TQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVS- 188

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
               L  LN  +N   ++   +     L  L  ++N + EI+    +  + +LT  D S 
Sbjct: 189 QNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSV 242

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N + ++   +    +L  L+ +  
Sbjct: 243 NPLTELD--VSTLSKLTTLHCIQT 264

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 11/144 (7%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           D S N L  ++      + +  L      +  +  DL +   L+Y   E  +        
Sbjct: 239 DCSVNPLTELDVSTL--SKLTTLHCIQTDLLEI--DLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           +   L  L+  +    ++   +     L  L LNN ++ E++    +    KL  L   N
Sbjct: 295 HNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD----VSHNTKLKSLSCVN 348

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
            +I+     +G    L++      
Sbjct: 349 AHIQDFS-SVGKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 33  ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKC 92
           E+  +  +          L  L  ++  N+ +  +        L +L  +SN    +   
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-- 80

Query: 93  IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNL 152
           +    NL  L  ++N +  ++    +  + KLT L+   N + K+   +     L +LN 
Sbjct: 81  LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNC 134

Query: 153 VGN 155
             N
Sbjct: 135 ARN 137

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 50  NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
           N    V    E    +TI  +     L  L+  ++    +   I  L  L  LI  +N+I
Sbjct: 19  NFASEVAAAFEMQATDTISEE-QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76

Query: 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
             ++    L +   LT L   +N +  +   +    +L +LN   N   
Sbjct: 77  TTLD----LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           D     +  ++  L     +  L L++  +  L  D+ +   L  ++  N  ++      
Sbjct: 303 DCQAAGITELD--LSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFSSVG 358

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNN 107
               L     +  +   +PK     ++L I +  + 
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.5 bits (147), Expect = 8e-12
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 8/115 (6%)

Query: 29  TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDFNFGH---LRELNLSSN 84
           T+ + L L  N I  L P +  +L +L  + L +N+L  + +   F     L  L+L +N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGTN 98

Query: 85  KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP 138
           +   +P  +F  L +L+ L +  N + E+  P  + ++  LT L L  N ++ IP
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-- 67
            L  N++  +   +FD + +++EL L  N +  LP  + + L  L  ++L  N+L  +  
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105

Query: 68  ---DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLV-KMQK 123
              D      HL+EL +  NK  ++P+ I  L +L  L L+ N ++ I  P     ++  
Sbjct: 106 AVFD---RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI--PHGAFDRLSS 160

Query: 124 LTVLDLSNN 132
           LT   L  N
Sbjct: 161 LTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 29  TSIRELDLSHNLIQNLPPDLL--NLRHLVYMNLENNKLETIDID-F-NFGHLRELNLSSN 84
               EL L+ N +  +  D L   L HLV + L+ N+L  I+ + F    H++EL L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 85  KFQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNN 132
           K ++I   +F  L  L+ L L +N I  +         +  LT L+L++N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCV--MPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 20/122 (16%)

Query: 43  NLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLREL---NLSSNKFQQIPKCIF-HLDN 98
           ++P     L       L +N+L  I  D  FG L  L    L  N+   I    F    +
Sbjct: 26  DIPLHTTELL------LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 99  LEILILNNNDIEEINQPEKL-VKMQKLTVLDLSNNNIRKIPY----ELGLAQQLHHLNLV 153
           ++ L L  N I+EI    K+ + + +L  L+L +N I  +       L     L  LNL 
Sbjct: 80  IQELQLGENKIKEI--SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL---NSLTSLNLA 134

Query: 154 GN 155
            N
Sbjct: 135 SN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 7/115 (6%)

Query: 29  TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETI--DIDFNFGHLRELNLSSNK 85
                LDL  N +++LP  +   L  L  + L  NKL+++   +      L  LNLS+N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 86  FQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNNNIRKIP 138
            Q +P  +F  L  L+ L LN N ++ +  P+ +  K+ +L  L L  N ++ +P
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 14/136 (10%)

Query: 6   AQVEQADLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNK 63
           AQ    DL  N L  + + +FD +TS+ +L L  N +Q+LP  + N L  L Y+NL  N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 64  LETI-----DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPEK 117
           L+++     D       L+EL L++N+ Q +P  +F  L  L+ L L  N ++ +  P+ 
Sbjct: 88  LQSLPNGVFD---KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV--PDG 142

Query: 118 LV-KMQKLTVLDLSNN 132
           +  ++  L  + L +N
Sbjct: 143 VFDRLTSLQYIWLHDN 158

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 14/145 (9%)

Query: 2   IAKEAQVEQADLSYNRLHVVNSKL--FD-ITSIRELDLSHNLIQNLPPDLLN-LRHLVYM 57
           I     V    L  N+L      +     +T++  L L+ N +Q+LP  + + L +L  +
Sbjct: 59  IQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114

Query: 58  NLENNKLETI--DIDFNFGHLRELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQ 114
            L  N+L+++   +     +L  LNL+ N+ Q +PK +F  L NL  L L+ N ++ +  
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-- 172

Query: 115 PEKLV-KMQKLTVLDLSNNNIRKIP 138
           PE +  K+ +L  L L  N ++ +P
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 12/138 (8%)

Query: 6   AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLP--PDLLNLRHLVYMNLENNK 63
           A+  +A+L    +    ++  ++ SI ++  +++ I+++     L N+R+L    L  NK
Sbjct: 19  AETIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQGIQYLPNVRYL---ALGGNK 74

Query: 64  LETIDIDFNFGHLRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIE--EINQPEKLVK 120
           L  I       +L  L L+ N+ Q +P  +F  L NL+ L+L  N ++       +KL  
Sbjct: 75  LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT- 133

Query: 121 MQKLTVLDLSNNNIRKIP 138
              LT L+L++N ++ +P
Sbjct: 134 --NLTYLNLAHNQLQSLP 149

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 29  TSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETIDID-FN-FGHLRELNLSSNK 85
           +S   L+L  N +Q+LP  + + L  L  ++L  N+++++    F+    L  L L  NK
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 86  FQQIPKCIF-HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNN 132
            Q +P  +F  L  L+ L L+ N ++ +  P+ +  ++  L  + L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 77  RELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPE----KLVKMQKLTVLDLSN 131
             L L SNK Q +P  +F  L  L  L L+ N I+ +  P+    KL K   LT+L L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL--PDGVFDKLTK---LTILYLHE 85

Query: 132 NNIRKIP 138
           N ++ +P
Sbjct: 86  NKLQSLP 92

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 29  TSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-----DIDFNFGHLRELNLS 82
           T+ + L L  N I  L P + + L  L  ++L+NN+L  +     D       L +L+L+
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD---KLTQLTQLSLN 86

Query: 83  SNKFQQIPKCIF-HLDNLEILILNNN 107
            N+ + IP+  F +L +L  + L NN
Sbjct: 87  DNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 77  RELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPE----KLVKMQKLTVLDLSN 131
           + L L  N+  ++   +F  L  L  L L+NN +  +  P     KL +   LT L L++
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL--PAGVFDKLTQ---LTQLSLND 87

Query: 132 NNIRKIP 138
           N ++ IP
Sbjct: 88  NQLKSIP 94

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 29  TSIRELDLSHNLIQNLPPDLLN-LRHLVYMNLENNKLETI-----DIDFNFGHLRELNLS 82
           T  + L L++N I  L P + + L +L  +   +NKL  I     D       L +L+L+
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD---KLTQLTQLDLN 89

Query: 83  SNKFQQIPKCIF-HLDNLEILILNNN 107
            N  + IP+  F +L +L  + L NN
Sbjct: 90  DNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 10/67 (14%)

Query: 77  RELNLSSNKFQQIPKCIF-HLDNLEILILNNNDIEEINQPE----KLVKMQKLTVLDLSN 131
           + L L++N+  ++   +F HL NL+ L  N+N +  I  P     KL +   LT LDL++
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI--PTGVFDKLTQ---LTQLDLND 90

Query: 132 NNIRKIP 138
           N+++ IP
Sbjct: 91  NHLKSIP 97

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 44/188 (23%)

Query: 12  DLSYNRL-----HVVNSKLFDITSIRELDLSHNLI-----QNLPPDLLNLRHLVYMNLEN 61
            L  + +       V + L +  S++E+ LS N I     + L  ++ + + L      +
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 69

Query: 62  NKLETIDIDFNFG------------HLRELNLSSNKF-----QQIPKCIFHLDNLEILIL 104
                +  +                 L  + LS N F     + +   +     LE L L
Sbjct: 70  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 129

Query: 105 NNNDI------------EEINQPEKLVKMQKLTVLDLSNNNI-----RKIPYELGLAQQL 147
           +NN +            +E+   +K      L  +    N +     ++        + L
Sbjct: 130 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189

Query: 148 HHLNLVGN 155
           H + +V N
Sbjct: 190 HTVKMVQN 197

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 57  MNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPE 116
           ++L+  + +   +  N      LN  S     +     ++  L  L L+NN +  ++   
Sbjct: 132 LDLKGLRSDPDLVAQNI--DVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMS 189

Query: 117 KLVKMQK-LTVLDLSNNNIRKIPYELGLAQQLH--HLNLVGN 155
            +V+    L +L+LS N ++    EL   + L    L L GN
Sbjct: 190 SIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN 230

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 30/133 (22%)

Query: 29  TSIRELDLSHNLIQN---------LPPDLLNLRHLVYMNLENNKLETIDIDF-------N 72
            ++  L+L  N + +         L     ++  L   +L  N L               
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL---DLSANLLGLKSYAELAYIFSSI 223

Query: 73  FGHLRELNLSSNKF-----QQIPKCIFHLDNLEILILNNNDIEEINQP------EKLVKM 121
             H+  LNL  N       + +      L +L+ + L+ + ++ +++            +
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283

Query: 122 QKLTVLDLSNNNI 134
           QK+ ++D +   I
Sbjct: 284 QKIILVDKNGKEI 296

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 29 TSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENN 62
              EL L+ N +  LPP LL  L  L   +L  N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 21/127 (16%)

Query: 29  TSIRELDLSHNLIQN-----LPPDLLN-LRHLVYMNLENNKLETIDIDF------NFGHL 76
            S+REL L  N + +     L P LL+    L  + +    +                 L
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 77  RELNLSSNKF-----QQIPKCIFHLD-NLEILILNNNDIEEINQP---EKLVKMQKLTVL 127
           +EL+L+ N+      + + + +      LE L + +              L + + L  L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 128 DLSNNNI 134
            +SNN +
Sbjct: 347 QISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 42/162 (25%)

Query: 7   QVEQADLSYNRL-----HVVNSKLFDITSIRELDLSHNLIQN---------LPPDLLNLR 52
           Q +   L    L       ++S L    ++ EL+L  N + +         L      ++
Sbjct: 29  QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88

Query: 53  HLVYMNLENNKLETIDIDF------NFGHLRELNLSSNKFQ-----------QIPKCIFH 95
            L   +L+N  L                 L+EL+LS N                P+C   
Sbjct: 89  KL---SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC--- 142

Query: 96  LDNLEILILNNNDI-EEINQP--EKLVKMQKLTVLDLSNNNI 134
              LE L L    +     +P    L        L +SNN+I
Sbjct: 143 --RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 36/154 (23%)

Query: 12  DLSYNRL-----HVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENN-KLE 65
            L    L      V++S L  + +++EL LS NL+ +       L+ L    L+   +LE
Sbjct: 91  SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA-----GLQLLCEGLLDPQCRLE 145

Query: 66  TIDIDFN-FG---------------HLRELNLSSNKF-----QQIPKCIFHLD-NLEILI 103
            + +++                     +EL +S+N       + + + +      LE L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 104 LNNNDIEEINQP---EKLVKMQKLTVLDLSNNNI 134
           L +  +   N       +     L  L L +N +
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 33/131 (25%)

Query: 29  TSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETIDIDF------NFGHLR 77
             I+ LD+    + +     L P L   + +    L++  L                 L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVV---RLDDCGLTEARCKDISSALRVNPALA 59

Query: 78  ELNLSSNKFQ-----------QIPKCIFHLDNLEILILNNNDIEEINQP---EKLVKMQK 123
           ELNL SN+             Q P C      ++ L L N  +           L  +  
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSC-----KIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 124 LTVLDLSNNNI 134
           L  L LS+N +
Sbjct: 115 LQELHLSDNLL 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.83
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.83
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.8
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.69
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.68
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.23
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.03
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.56
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.71
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	83.14

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1.7e-22  Score=145.98  Aligned_cols=165  Identities=22%  Similarity=0.308  Sum_probs=116.3

Q ss_pred             CCCCCCccEEecCCCcceec-ccccccCCCccEEEcCCCc-CCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNL-IQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHL   76 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~-l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L   76 (183)
                      |..+++|+.|++++|.+..+ +..+..+++|+.|++++|. ++.+ +..+..+++|++|++++|.++.+++..  .+++|
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            55677777777777777766 3445567777777777776 6665 445666777777777777777665443  67777


Q ss_pred             CeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccC
Q psy3781          77 RELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVG  154 (183)
Q Consensus        77 ~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~  154 (183)
                      ++|++++|.++.++. .+..+++|+.|++++|.++++. +..+..+++|+.|++++|.++++ |..+..+++|+.|++++
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence            777777777776654 3556777777777777777764 44567777777777777777755 55577777777777777


Q ss_pred             CcCCCCcHHHhhh
Q psy3781         155 NCFKYPRQDILQK  167 (183)
Q Consensus       155 n~~~~~~~~~~~~  167 (183)
                      |.+++.+++.+..
T Consensus       211 n~l~~~~~~~~~~  223 (285)
T 1ozn_A          211 NNLSALPTEALAP  223 (285)
T ss_dssp             SCCSCCCHHHHTT
T ss_pred             CcCCcCCHHHccc
Confidence            7777777665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.5e-23  Score=153.25  Aligned_cols=164  Identities=17%  Similarity=0.263  Sum_probs=92.2

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCC--------------------
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENN--------------------   62 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n--------------------   62 (183)
                      .++++|+.|++++|.+..+|..+..+++|++|++++|.++.+|..+..+++|++|++++|                    
T Consensus       101 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            345566666666666666666666666666666666666666655555555555555554                    


Q ss_pred             -------------ccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEe
Q psy3781          63 -------------KLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD  128 (183)
Q Consensus        63 -------------~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  128 (183)
                                   .++.++..+ .+++|++|++++|.++.++..+..+++|+.|++++|.+.+.. +..++.+++|+.|+
T Consensus       181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLI  259 (328)
T ss_dssp             ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC-CCCTTCCCCCCEEE
T ss_pred             cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh-HHHhcCCCCCCEEE
Confidence                         443333333 444555555555555555444445555555555555544433 44555555566666


Q ss_pred             CCCCCCc-cCChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         129 LSNNNIR-KIPYELGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       129 l~~n~l~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      +++|.+. .+|..+..+++|+.|++++|++.+..+..+.+
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence            6555433 45555666666666666666665555555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.9e-22  Score=146.18  Aligned_cols=158  Identities=26%  Similarity=0.339  Sum_probs=119.4

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLREL   79 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L   79 (183)
                      |..+++|+.|++++|.++.++.. ..+++|+.|++++|.++.+|..+..+++|++|++++|.++.+++..  .+++|++|
T Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L  129 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (290)
T ss_dssp             GTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             hhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence            45567777777777777766554 5677777888888877777777777788888888888888777654  77788888


Q ss_pred             eCCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCC
Q psy3781          80 NLSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK  158 (183)
Q Consensus        80 ~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~  158 (183)
                      ++++|+++.++.. +..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.+|..+....+|+.+++++|++.
T Consensus       130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ECCCCCCCccChhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            8888888877654 346778888888888888775 45567788888888888888888877777778888888888877


Q ss_pred             CCc
Q psy3781         159 YPR  161 (183)
Q Consensus       159 ~~~  161 (183)
                      ...
T Consensus       209 C~c  211 (290)
T 1p9a_G          209 CNC  211 (290)
T ss_dssp             CSG
T ss_pred             CcC
Confidence            653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=3.1e-22  Score=143.59  Aligned_cols=159  Identities=24%  Similarity=0.394  Sum_probs=107.5

Q ss_pred             CCCCCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR   77 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~   77 (183)
                      |..+++|+.|++++|.+..++..++ .+++|++|++++|.++.++.. +..+++|++|++++|.++.++...  .+++|+
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  136 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT  136 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence            4556667777777776666666553 566777777777776665543 455667777777777777666543  666777


Q ss_pred             eEeCCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCC
Q psy3781          78 ELNLSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGN  155 (183)
Q Consensus        78 ~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n  155 (183)
                      +|++++|.++.++.. +..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.++.. +..+++|+.|++++|
T Consensus       137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            777777777766553 455677777777777777764 45566677777777777777766654 566777777777777


Q ss_pred             cCCCCc
Q psy3781         156 CFKYPR  161 (183)
Q Consensus       156 ~~~~~~  161 (183)
                      ++....
T Consensus       216 ~~~c~c  221 (270)
T 2o6q_A          216 PWDCTC  221 (270)
T ss_dssp             CBCCSS
T ss_pred             CeeCCC
Confidence            776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=6.7e-23  Score=150.93  Aligned_cols=158  Identities=19%  Similarity=0.293  Sum_probs=117.7

Q ss_pred             CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCC
Q psy3781           5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSS   83 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~   83 (183)
                      ...++.|++++|.+..+|+.++++++|++|++++|.++.+|..+..+++|++|++++|.++.++..+ .+++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            4789999999999999999999999999999999999999999999999999999999999888776 777888888877


Q ss_pred             CCCC-Ccchhcc---------CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEecc
Q psy3781          84 NKFQ-QIPKCIF---------HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLV  153 (183)
Q Consensus        84 ~~~~-~~~~~~~---------~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~  153 (183)
                      |++. .+|..+.         .+++|+.|++++|.++.+  +..++.+++|+.|++++|.++.+|..+..+++|+.|+++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            5443 4444333         256666666666666644  455666666666666666666665555566666666666


Q ss_pred             CCcCCCCcHHH
Q psy3781         154 GNCFKYPRQDI  164 (183)
Q Consensus       154 ~n~~~~~~~~~  164 (183)
                      +|.+.+..+..
T Consensus       238 ~n~~~~~~p~~  248 (328)
T 4fcg_A          238 GCTALRNYPPI  248 (328)
T ss_dssp             TCTTCCBCCCC
T ss_pred             CCcchhhhHHH
Confidence            65555544443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.2e-22  Score=142.57  Aligned_cols=159  Identities=26%  Similarity=0.342  Sum_probs=134.9

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCe
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRE   78 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~   78 (183)
                      +..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++. +..+++|++|++++|.++.+++..  .+++|++
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            456888999999999888764 566889999999999999977665 677899999999999999887764  7889999


Q ss_pred             EeCCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCc
Q psy3781          79 LNLSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNC  156 (183)
Q Consensus        79 L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~  156 (183)
                      |++++|.++.++.. +..+++|+.|++++|.++++. +..++.+++|+.|++++|.++.++.. +..+++|+.|++++|+
T Consensus       138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            99999999988664 467899999999999999875 56678899999999999999987755 6889999999999999


Q ss_pred             CCCCcH
Q psy3781         157 FKYPRQ  162 (183)
Q Consensus       157 ~~~~~~  162 (183)
                      +.+..+
T Consensus       217 ~~~~~~  222 (272)
T 3rfs_A          217 WDCTCP  222 (272)
T ss_dssp             BCCCTT
T ss_pred             ccccCc
Confidence            887755

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=9.6e-22  Score=139.61  Aligned_cols=156  Identities=27%  Similarity=0.430  Sum_probs=135.4

Q ss_pred             CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781           6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL   81 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l   81 (183)
                      +.++.|++++|.+..+++. +..+++|+.|++++|.++.+++. +..+++|++|++++|.++.++...  .+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            4689999999999977664 55789999999999999977654 778999999999999999888765  8899999999


Q ss_pred             CCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCcCCC
Q psy3781          82 SSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~  159 (183)
                      ++|.++.++.. +..+++|+.|++++|.++++. +..++.+++|+.|++++|.++.++. .+..+++|+.|++++|++.+
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            99999988765 467899999999999999885 5678899999999999999998876 57889999999999999988


Q ss_pred             CcH
Q psy3781         160 PRQ  162 (183)
Q Consensus       160 ~~~  162 (183)
                      ...
T Consensus       194 ~~~  196 (251)
T 3m19_A          194 SRC  196 (251)
T ss_dssp             TST
T ss_pred             Ccc
Confidence            743

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.1e-21  Score=140.79  Aligned_cols=161  Identities=27%  Similarity=0.427  Sum_probs=140.3

Q ss_pred             CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781           6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL   81 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l   81 (183)
                      ++++.|++++|.+..+++. +..+++|++|++++|.++.++.. |..+++|++|++++|.++.++...  .+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            4689999999999988764 55899999999999999988776 467999999999999999888765  7899999999


Q ss_pred             CCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCC
Q psy3781          82 SSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~  159 (183)
                      ++|.++.++. .+..+++|+.|++++|.++++. +..++.+++|+.|++++|.++.++.. +..+++|+.|++++|.+++
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            9999998865 4567899999999999999885 56688899999999999999988765 7889999999999999999


Q ss_pred             CcHHHhhh
Q psy3781         160 PRQDILQK  167 (183)
Q Consensus       160 ~~~~~~~~  167 (183)
                      .++..+..
T Consensus       196 ~~~~~~~~  203 (270)
T 2o6q_A          196 VPEGAFDS  203 (270)
T ss_dssp             CCTTTTTT
T ss_pred             CCHHHhcc
Confidence            88876654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=7.9e-22  Score=142.90  Aligned_cols=159  Identities=25%  Similarity=0.329  Sum_probs=116.9

Q ss_pred             CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCC
Q psy3781           6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSS   83 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~   83 (183)
                      +.++.|++++|.+..+++ .+..+++|+.|++++|.++.++.. ..+++|++|++++|.++.++..+ .+++|++|++++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence            356666666666665443 344667777777777777765543 55677778888888777777666 777888888888


Q ss_pred             CCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781          84 NKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      |+++.++. .+..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.++..+
T Consensus       110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          110 NRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence            88887764 4666788888888888888775 56677788888888888888888765 567888888888888888777


Q ss_pred             HHHhh
Q psy3781         162 QDILQ  166 (183)
Q Consensus       162 ~~~~~  166 (183)
                      ..++.
T Consensus       189 ~~~~~  193 (290)
T 1p9a_G          189 KGFFG  193 (290)
T ss_dssp             TTTTT
T ss_pred             hhhcc
Confidence            66554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=1.4e-21  Score=141.19  Aligned_cols=161  Identities=27%  Similarity=0.401  Sum_probs=142.3

Q ss_pred             CCCCCCCccEEecCCCc-ceec-ccccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCcc--ccCC
Q psy3781           1 MIAKEAQVEQADLSYNR-LHVV-NSKLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDIDF--NFGH   75 (183)
Q Consensus         1 ~l~~~~~l~~l~l~~~~-i~~l-~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~   75 (183)
                      +|..+++|+.|++++|. +..+ +..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.++...  .+++
T Consensus        75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  154 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN  154 (285)
T ss_dssp             TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence            36778999999999997 8887 445668999999999999999774 45778999999999999999888764  7899


Q ss_pred             CCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEecc
Q psy3781          76 LRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLV  153 (183)
Q Consensus        76 L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~  153 (183)
                      |++|++++|.++.++. .+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+++++.. +..+++|+.++++
T Consensus       155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  233 (285)
T 1ozn_A          155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence            9999999999998876 4677999999999999999987 78889999999999999999998865 8899999999999


Q ss_pred             CCcCCCCcH
Q psy3781         154 GNCFKYPRQ  162 (183)
Q Consensus       154 ~n~~~~~~~  162 (183)
                      +|++.....
T Consensus       234 ~N~~~c~~~  242 (285)
T 1ozn_A          234 DNPWVCDCR  242 (285)
T ss_dssp             SSCEECSGG
T ss_pred             CCCccCCCC
Confidence            999987553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.8e-21  Score=139.76  Aligned_cols=162  Identities=25%  Similarity=0.395  Sum_probs=142.8

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN   80 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~   80 (183)
                      ..+++|+.|++.++.+..++. +..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+++..  .+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            346789999999999987654 678999999999999999864 6888999999999999999888765  889999999


Q ss_pred             CCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCC
Q psy3781          81 LSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFK  158 (183)
Q Consensus        81 l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~  158 (183)
                      +++|+++.++.. +..+++|+.|++++|.++++. +..++.+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            999999988664 567899999999999999886 66678999999999999999988765 688999999999999999


Q ss_pred             CCcHHHhhh
Q psy3781         159 YPRQDILQK  167 (183)
Q Consensus       159 ~~~~~~~~~  167 (183)
                      +.++..+..
T Consensus       195 ~~~~~~~~~  203 (272)
T 3rfs_A          195 SVPDGVFDR  203 (272)
T ss_dssp             CCCTTTTTT
T ss_pred             ccCHHHHhC
Confidence            998876654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=1.5e-21  Score=140.31  Aligned_cols=159  Identities=23%  Similarity=0.314  Sum_probs=96.0

Q ss_pred             CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCc-c-ccCCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDID-F-NFGHLR   77 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~   77 (183)
                      |..+++|+.|++++|.+..+++. +..+++|+.|++++|.++.++ ..+..+++|++|++++|.+..++.. + .+++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            44566666666666666655543 335666667777766666544 3355666677777766666665553 2 666777


Q ss_pred             eEeCCCCCCCC--cchhccCCCCCcEEEcCCCccccccCchhhhcC---------------------------CCccEEe
Q psy3781          78 ELNLSSNKFQQ--IPKCIFHLDNLEILILNNNDIEEINQPEKLVKM---------------------------QKLTVLD  128 (183)
Q Consensus        78 ~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~---------------------------~~L~~l~  128 (183)
                      +|++++|.++.  ++..+..+++|+.|++++|.++++. +..+..+                           .+|+.|+
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~  206 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA  206 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence            77777777664  4555666677777777777666543 2222221                           2455566


Q ss_pred             CCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781         129 LSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       129 l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      +++|.++.++.. +..+++|+.+++++|++.+..
T Consensus       207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            666666655544 455666666666666666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=8.4e-22  Score=143.60  Aligned_cols=152  Identities=23%  Similarity=0.423  Sum_probs=61.7

Q ss_pred             CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc--cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCC
Q psy3781           7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLS   82 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~   82 (183)
                      +|+.|++++|.+..++..+..+++|+.|++++|.++.++.  .+..+++|++|++++|.+....+..  .+++|++|+++
T Consensus        79 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             ccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            3444444444444344333344444444444444443332  2333444444444444443322221  33344444444


Q ss_pred             CCCCCC--cchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCcCCC
Q psy3781          83 SNKFQQ--IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        83 ~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~  159 (183)
                      +|.++.  ++..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++++. .+..+++|+.|++++|.+.+
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            444332  2233333444444444444444433 3334444444444444444443332 23334444444444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=4.9e-21  Score=135.97  Aligned_cols=159  Identities=23%  Similarity=0.380  Sum_probs=141.0

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLS   82 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~   82 (183)
                      ...+.++++++.+..+|..+.  +.++.|++++|.++.+++ .+..+++|++|++++|.++.+++..  .+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            356889999999999998775  689999999999997765 4888999999999999999888764  88999999999


Q ss_pred             CCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCcCCCC
Q psy3781          83 SNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus        83 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~~  160 (183)
                      +|.++.++. .+..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+++.
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            999998865 4567999999999999999886 5667889999999999999999887 588999999999999999999


Q ss_pred             cHHHhhh
Q psy3781         161 RQDILQK  167 (183)
Q Consensus       161 ~~~~~~~  167 (183)
                      ++..+..
T Consensus       171 ~~~~~~~  177 (251)
T 3m19_A          171 PHGAFDR  177 (251)
T ss_dssp             CTTTTTT
T ss_pred             CHHHHhC
Confidence            8876654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=6.1e-21  Score=139.31  Aligned_cols=152  Identities=23%  Similarity=0.335  Sum_probs=90.7

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS   82 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~   82 (183)
                      ..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++....+++|++|+++
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  137 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD  137 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC
T ss_pred             hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECC
Confidence            445666666666666666555 556666666666666666553 455566666666666666655442255666666666


Q ss_pred             CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781          83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      +|.++.++. +..+++|+.|++++|.+++..  . +..+++|+.|++++|.+++++. +..+++|+.|++++|.+.+.+
T Consensus       138 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          138 LNQITNISP-LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             SSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             CCccCcCcc-ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc
Confidence            666665543 445566666666666665542  2 5556666666666666665544 555566666666666665554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.87  E-value=1.1e-21  Score=140.19  Aligned_cols=155  Identities=27%  Similarity=0.374  Sum_probs=138.0

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL   81 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l   81 (183)
                      +..+++|+.|++++|.+..++ .+..+++|+.|++++|+++.+++ +..+++|++|++++|.++.++.... ++|++|++
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L  113 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFL  113 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEEC
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEc
Confidence            346789999999999999887 67789999999999999998887 8899999999999999998876546 89999999


Q ss_pred             CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781          82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      ++|+++.++ .+..+++|+.|++++|.++++  + .++.+++|+.|++++|.++++ ..+..+++|+.|++++|++.+.+
T Consensus       114 ~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          114 DNNELRDTD-SLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CSSCCSBSG-GGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             cCCccCCCh-hhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence            999999885 477899999999999999987  3 688899999999999999988 66889999999999999988776


Q ss_pred             HHH
Q psy3781         162 QDI  164 (183)
Q Consensus       162 ~~~  164 (183)
                      ...
T Consensus       189 ~~~  191 (263)
T 1xeu_A          189 VKY  191 (263)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=5.9e-22  Score=144.99  Aligned_cols=69  Identities=26%  Similarity=0.172  Sum_probs=38.8

Q ss_pred             ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEEeccCCcCCCCcHH
Q psy3781          93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus        93 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      +..+++|+.|++++|.+++.  ...+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+.
T Consensus       217 ~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          217 FGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             HhcCCCCCEEECCCCceeee--cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            33445555555555555443  223445566666666666665 5555566666666666666666544443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.87  E-value=3.5e-21  Score=139.58  Aligned_cols=153  Identities=27%  Similarity=0.331  Sum_probs=98.1

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS   82 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~   82 (183)
                      ..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++. +..+++|++|++++|.++.++....+++|++|+++
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~  142 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG  142 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEcc
Confidence            445666666666666666555 5566666666666666665543 55666667777776666665322266667777777


Q ss_pred             CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcH
Q psy3781          83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      +|.++.+ ..+..+++|+.|++++|.+++..  . +..+++|+.|++++|.+++++. +..+++|+.|++++|++...+.
T Consensus       143 ~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          143 NNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             SSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred             CCcCCcc-hhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence            7766665 34556667777777777776653  2 6666777777777777776654 6667777777777776655443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.87  E-value=1.3e-20  Score=132.12  Aligned_cols=152  Identities=25%  Similarity=0.358  Sum_probs=135.1

Q ss_pred             CccEEecCCCcceecccccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781           7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS   83 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~   83 (183)
                      .-+.++++++.+..+|..+.  ++++.|++++|.++.+ +..|..+++|++|++++|.+..++...  .+++|++|++++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45789999999999998774  8999999999999977 555888999999999999999988765  889999999999


Q ss_pred             CCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781          84 NKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        84 ~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      |.++.++.. +..+++|+.|++++|.++.+  +..+..+++|+.|++++|.++.++.. +..+++|+.|++++|++.+..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSC--CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccccc--CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            999988764 56799999999999999977  67889999999999999999988854 888999999999999999876


Q ss_pred             H
Q psy3781         162 Q  162 (183)
Q Consensus       162 ~  162 (183)
                      +
T Consensus       176 ~  176 (229)
T 3e6j_A          176 R  176 (229)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=7.1e-21  Score=132.66  Aligned_cols=152  Identities=24%  Similarity=0.349  Sum_probs=134.4

Q ss_pred             ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc--cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS   83 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~   83 (183)
                      -+.++++++.++.+|..+.  ..++.|++++|.++.+++  .|..+++|++|++++|.++.++...  .+++|++|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4689999999999988764  467899999999997743  3788999999999999999988754  889999999999


Q ss_pred             CCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCCcCCCCc
Q psy3781          84 NKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      |.++.++. .+..+++|+.|++++|.++++. +..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.+..
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeEC-HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            99998866 4667999999999999999987 78889999999999999999988 567899999999999999998765


Q ss_pred             H
Q psy3781         162 Q  162 (183)
Q Consensus       162 ~  162 (183)
                      .
T Consensus       170 ~  170 (220)
T 2v70_A          170 Y  170 (220)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=6.7e-21  Score=132.80  Aligned_cols=151  Identities=25%  Similarity=0.407  Sum_probs=134.1

Q ss_pred             ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCc-c-ccCCCCeEeCCCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDID-F-NFGHLRELNLSSN   84 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~L~l~~~   84 (183)
                      -+.+++.++.++.+|..+.  ++++.|++++|.++.++. .|..+++|++|++++|.++.+.+. + .+++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3678999999999998764  689999999999998776 578899999999999999988554 4 8899999999999


Q ss_pred             CCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781          85 KFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        85 ~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      .++.++.. +..+++|+.|++++|.++.+. +..+..+++|+.|++++|.++.++.. +..+++|+.+++++|++....
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            99999775 456999999999999999987 78899999999999999999988764 888999999999999998754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.87  E-value=2e-21  Score=133.25  Aligned_cols=150  Identities=14%  Similarity=0.172  Sum_probs=128.9

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCcccc-ccCcc-ccCCCCeEeC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET-IDIDF-NFGHLRELNL   81 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~-~~~~L~~L~l   81 (183)
                      ++++|+.|++++|.+..++ ++..+++|+.|++++|.++.++ .+..+++|++|++++|.++. .+..+ .+++|++|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            4578999999999999888 6788999999999999887664 67889999999999999986 34445 8899999999


Q ss_pred             CCCCCCC-cchhccCCCCCcEEEcCCCc-cccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCC
Q psy3781          82 SSNKFQQ-IPKCIFHLDNLEILILNNND-IEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        82 ~~~~~~~-~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~  159 (183)
                      ++|.++. .+..+..+++|+.|++++|. ++++  + .+..+++|+.|++++|.+++++ .+..+++|+.|++++|++.+
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            9999995 46678889999999999998 7776  3 6888999999999999999987 68899999999999999865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=4.2e-21  Score=146.47  Aligned_cols=163  Identities=24%  Similarity=0.346  Sum_probs=104.4

Q ss_pred             CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--------
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--------   71 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--------   71 (183)
                      |..+++|+.|++++|.+..+++. +..+++|+.|++++|+++.++.. |..+++|++|++++|.+..++...        
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  163 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR  163 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence            55667777777777777766544 33567777777777777766553 556666777777666665444321        


Q ss_pred             -------------------ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCC
Q psy3781          72 -------------------NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN  132 (183)
Q Consensus        72 -------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  132 (183)
                                         .+++|++|++++|+++.++. +..+++|+.|++++|.++++. +..+..+++|+.|++++|
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccC-hhhhccCccCCEEECCCC
Confidence                               34455555555555555542 445566667777777666665 566666777777777777


Q ss_pred             CCccCC-hhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781         133 NIRKIP-YELGLAQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       133 ~l~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                      .++.++ ..+..+++|+.|++++|.+++.+++.+.
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence            776553 3366677777777777777777666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=1.5e-21  Score=142.26  Aligned_cols=166  Identities=25%  Similarity=0.333  Sum_probs=122.7

Q ss_pred             CCCCCCccEEecCCCcceec---ccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccC--cc-ccCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVV---NSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI--DF-NFGH   75 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l---~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~~-~~~~   75 (183)
                      |.++++|+.|++++|.+..+   +..+..+++|+.|++++|.++.++..+..+++|++|++++|.++.++.  .+ .+++
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  127 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence            45666677777777766633   344445667777777777777666677778888888888888877665  33 7788


Q ss_pred             CCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEecc
Q psy3781          76 LRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLV  153 (183)
Q Consensus        76 L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~  153 (183)
                      |++|++++|.++.. +..+..+++|+.|++++|.+.+...+..+..+++|+.|++++|.++++ +..+..+++|+.|+++
T Consensus       128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            88888888887754 345666788888888888887622267788888999999999988876 5568888899999999


Q ss_pred             CCcCCCCcHHHhhh
Q psy3781         154 GNCFKYPRQDILQK  167 (183)
Q Consensus       154 ~n~~~~~~~~~~~~  167 (183)
                      +|.+.+.++..+..
T Consensus       208 ~N~l~~~~~~~~~~  221 (306)
T 2z66_A          208 HNNFFSLDTFPYKC  221 (306)
T ss_dssp             TSCCSBCCSGGGTT
T ss_pred             CCccCccChhhccC
Confidence            99988877765543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=7.7e-21  Score=145.47  Aligned_cols=162  Identities=24%  Similarity=0.319  Sum_probs=93.7

Q ss_pred             CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCc---------
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID---------   70 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~---------   70 (183)
                      |..+++|+.|++++|.+..+++. +..+++|+.|++++|.++.++.. |..+++|++|++++|.+..++..         
T Consensus        95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  174 (452)
T 3zyi_A           95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM  174 (452)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence            45566666666666666655433 33566666666666666655544 44566666666666655544431         


Q ss_pred             -----------------c-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCC
Q psy3781          71 -----------------F-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNN  132 (183)
Q Consensus        71 -----------------~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n  132 (183)
                                       + .+++|++|++++|+++.++ .+..+++|+.|++++|.++++. +..+..+++|+.|++++|
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTS
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCC
Confidence                             1 3445555555555555443 2344556666666666666554 555666666666666666


Q ss_pred             CCccCC-hhccccCcccEEeccCCcCCCCcHHHh
Q psy3781         133 NIRKIP-YELGLAQQLHHLNLVGNCFKYPRQDIL  165 (183)
Q Consensus       133 ~l~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~  165 (183)
                      .++.++ ..+..+++|+.|++++|.+++.+++.+
T Consensus       253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             cCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            666443 335566666666666666666665544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=1.7e-20  Score=138.03  Aligned_cols=164  Identities=23%  Similarity=0.308  Sum_probs=109.8

Q ss_pred             CCCCCCccEEecCCCcceec-ccccccCCCccEEEcCCCcCCCCCc---------------------c-ccCCCCCceEE
Q psy3781           2 IAKEAQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNLIQNLPP---------------------D-LLNLRHLVYMN   58 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~l~~l~~---------------------~-~~~~~~L~~L~   58 (183)
                      |..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+|.                     . +..+++|++|+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEE
Confidence            34455566666666555544 3334455555555555554443321                     1 33455555566


Q ss_pred             cCCCccc--------------------------cccCccccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCcccc
Q psy3781          59 LENNKLE--------------------------TIDIDFNFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEE  111 (183)
Q Consensus        59 l~~n~l~--------------------------~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~  111 (183)
                      +++|.+.                          .++... .++|++|++++|.++.+ +..+..+++|+.|++++|.+++
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence            5555553                          332222 14566666666666655 3456678889999999998888


Q ss_pred             ccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         112 INQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       112 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      .. +..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++++.+...|..
T Consensus       231 ~~-~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          231 VD-NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             EC-TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             eC-hhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence            75 56788889999999999999999988899999999999999999988877643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=1.1e-20  Score=139.17  Aligned_cols=165  Identities=23%  Similarity=0.326  Sum_probs=107.3

Q ss_pred             CCCCCCccEEecCCCcceec-ccccccCCCccEEEcCCCcCCCCCcc----------------------ccCCCCCceEE
Q psy3781           2 IAKEAQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNLIQNLPPD----------------------LLNLRHLVYMN   58 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~l~~l~~~----------------------~~~~~~L~~L~   58 (183)
                      |..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+|..                      +..+++|++|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence            44555666666666666654 33344555566666555555544432                      44455566666


Q ss_pred             cCCCcccc--ccCc-c-cc--------------------CCCCeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCcccccc
Q psy3781          59 LENNKLET--IDID-F-NF--------------------GHLRELNLSSNKFQQIP-KCIFHLDNLEILILNNNDIEEIN  113 (183)
Q Consensus        59 l~~n~l~~--~~~~-~-~~--------------------~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~  113 (183)
                      +++|.++.  ..+. + .+                    ++|++|++++|.++.++ ..+..+++|+.|++++|.+++..
T Consensus       154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence            66555532  1111 1 11                    24445555555555443 34556778888888888888775


Q ss_pred             CchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         114 QPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       114 ~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                       +..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++++.+...+..
T Consensus       234 -~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          234 -NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             -TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             -hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence             56788889999999999999999988889999999999999999888776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=2.8e-21  Score=141.45  Aligned_cols=165  Identities=22%  Similarity=0.318  Sum_probs=143.8

Q ss_pred             CCCCCCccEEecCCCcce-ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCccc-cccCcc-ccC-CC
Q psy3781           2 IAKEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-TIDIDF-NFG-HL   76 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~l~-~~~~~~-~~~-~L   76 (183)
                      |.++++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++..+ .+. .|
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence            567899999999999998 77888889999999999999998 78888999999999999999998 666666 666 89


Q ss_pred             CeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCC
Q psy3781          77 RELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN  155 (183)
Q Consensus        77 ~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n  155 (183)
                      ++|++++|.++ .++..+..+. |+.|++++|.+++.. +..+..+++|+.|++++|.++..+..+..+++|++|++++|
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC-GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred             cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC-CHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence            99999999998 5566777666 999999999998876 78888999999999999999966666888999999999999


Q ss_pred             cCCCCcHHHhhhC
Q psy3781         156 CFKYPRQDILQKG  168 (183)
Q Consensus       156 ~~~~~~~~~~~~~  168 (183)
                      .+.+..+..+.+.
T Consensus       255 ~l~~~~p~~l~~l  267 (313)
T 1ogq_A          255 RIYGTLPQGLTQL  267 (313)
T ss_dssp             CCEECCCGGGGGC
T ss_pred             cccCcCChHHhcC
Confidence            9997777766554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1e-20  Score=138.12  Aligned_cols=152  Identities=20%  Similarity=0.311  Sum_probs=137.3

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS   83 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~   83 (183)
                      .+++|+.|++.++.+..++ .+..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++....+++|++|++++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCC
Confidence            4678999999999999886 57789999999999999998887 889999999999999999886433899999999999


Q ss_pred             CCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcH
Q psy3781          84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      |.++.++. +..+++|+.|++++|.+++..  . ++.+++|+.|++++|.+++++. +..+++|+.|++++|.+++.++
T Consensus       117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          117 TQITDVTP-LAGLSNLQVLYLDLNQITNIS--P-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCchh-hcCCCCCCEEECCCCccCcCc--c-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence            99998865 778999999999999999874  3 8889999999999999999877 8899999999999999998875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=1.2e-20  Score=135.66  Aligned_cols=160  Identities=28%  Similarity=0.393  Sum_probs=131.5

Q ss_pred             CccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCC
Q psy3781           7 QVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLS   82 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~   82 (183)
                      +++.|++++|.+..+++ .+.++++|+.|++++|.++.++. .+..+++|++|++++|.++.++...  .+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            69999999999998877 56689999999999999997765 5788999999999999999887654  88999999999


Q ss_pred             CCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hcccc----------------
Q psy3781          83 SNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLA----------------  144 (183)
Q Consensus        83 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~----------------  144 (183)
                      +|.++.++. .+..+++|+.|++++|.+++...+..++.+++|+.|++++|.+++++. .+..+                
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            999998765 577899999999999999885447889999999999999999886543 22222                


Q ss_pred             -----------CcccEEeccCCcCCCCcHHHhh
Q psy3781         145 -----------QQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       145 -----------~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                                 .+|+.|++++|.+++.++..+.
T Consensus       189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred             ccccCccccCCCcccEEECCCCceeecCHhHhc
Confidence                       2566777777777777666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=3.9e-20  Score=139.03  Aligned_cols=161  Identities=24%  Similarity=0.329  Sum_probs=85.0

Q ss_pred             CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR   77 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~   77 (183)
                      |..+++|+.|++++|.+..+++. +..+++|+.|++++|.++.++.. |..+++|++|++++|.+..+++..  .+++|+
T Consensus        89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A           89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            34455555555555555544433 23455555555555555555444 244555555555555555444332  444555


Q ss_pred             eEeCCCCCCCCcc------------------------------------------------------------hhccCCC
Q psy3781          78 ELNLSSNKFQQIP------------------------------------------------------------KCIFHLD   97 (183)
Q Consensus        78 ~L~l~~~~~~~~~------------------------------------------------------------~~~~~~~   97 (183)
                      +|++++|.++.++                                                            ..+..++
T Consensus       169 ~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~  248 (390)
T 3o6n_A          169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP  248 (390)
T ss_dssp             EEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCT
T ss_pred             EEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCC
Confidence            5555544443211                                                            1122345


Q ss_pred             CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHH
Q psy3781          98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      +|+.|++++|.+++.. +..+..+++|+.|++++|.++.++..+..+++|+.|++++|.+.+.+..
T Consensus       249 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  313 (390)
T 3o6n_A          249 GLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN  313 (390)
T ss_dssp             TCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred             CccEEECCCCcCCCcC-hhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcc
Confidence            5555556666555554 4555666666666666666666555555566666666666666655443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.85  E-value=1.2e-20  Score=152.85  Aligned_cols=89  Identities=31%  Similarity=0.458  Sum_probs=56.3

Q ss_pred             CCCCeEeCCCCCCC-CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEEe
Q psy3781          74 GHLRELNLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLN  151 (183)
Q Consensus        74 ~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l~  151 (183)
                      ++++.|++++|+++ .+|..++.++.|+.|++++|.+++.. |..++.++.|+.|++++|.++ .+|..+..+++|++|+
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            34556666666665 44555666666666666666666544 666666666666666666666 5566666666666666


Q ss_pred             ccCCcCCCCcHH
Q psy3781         152 LVGNCFKYPRQD  163 (183)
Q Consensus       152 l~~n~~~~~~~~  163 (183)
                      +++|+++|..|.
T Consensus       711 ls~N~l~g~iP~  722 (768)
T 3rgz_A          711 LSNNNLSGPIPE  722 (768)
T ss_dssp             CCSSEEEEECCS
T ss_pred             CcCCcccccCCC
Confidence            666666655543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.85  E-value=2.1e-20  Score=151.31  Aligned_cols=165  Identities=25%  Similarity=0.335  Sum_probs=117.0

Q ss_pred             CCCCCccEEecCCCcce-ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCCccc-cccCcc-ccCCCCe
Q psy3781           3 AKEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENNKLE-TIDIDF-NFGHLRE   78 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n~l~-~~~~~~-~~~~L~~   78 (183)
                      ..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+. .++..+ .+++|++
T Consensus       463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  542 (768)
T 3rgz_A          463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW  542 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred             cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence            34556666666666666 45555556667777777777666 55666666777777777777766 444444 6677777


Q ss_pred             EeCCCCCCC-Ccchhc----------------------------------------------------------------
Q psy3781          79 LNLSSNKFQ-QIPKCI----------------------------------------------------------------   93 (183)
Q Consensus        79 L~l~~~~~~-~~~~~~----------------------------------------------------------------   93 (183)
                      |++++|.++ .+|..+                                                                
T Consensus       543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g  622 (768)
T 3rgz_A          543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG  622 (768)
T ss_dssp             EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred             EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence            777777655 333222                                                                


Q ss_pred             ------cCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781          94 ------FHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus        94 ------~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                            ..+++|+.+++++|.+++.. |..++.++.|+.|++++|.++ .+|..++.+++|+.|++++|.+++..+..+.
T Consensus       623 ~~~~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          623 HTSPTFDNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             ECCCSCSSSBCCCEEECCSSCCBSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             cCchhhhccccccEEECcCCcccccC-CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence                  12356777888888887665 788888888999999999888 7888888889999999999999888887766


Q ss_pred             hC
Q psy3781         167 KG  168 (183)
Q Consensus       167 ~~  168 (183)
                      +-
T Consensus       702 ~l  703 (768)
T 3rgz_A          702 AL  703 (768)
T ss_dssp             GC
T ss_pred             CC
Confidence            53

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=4.7e-21  Score=135.09  Aligned_cols=161  Identities=16%  Similarity=0.212  Sum_probs=94.2

Q ss_pred             CCCCCCccEEecCCCc-ceecccc-cccCCCccEEEcCC-CcCCCCCc-cccCCCCCceEEcCCCccccccCccccCCCC
Q psy3781           2 IAKEAQVEQADLSYNR-LHVVNSK-LFDITSIRELDLSH-NLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDFNFGHLR   77 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~-i~~l~~~-~~~~~~l~~l~l~~-~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~   77 (183)
                      |..+++|+.|++++|. ++.+++. +..+++|+.|++++ |.++.++. .|..+++|++|++++|.++.++....+.+|+
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~  130 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD  130 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccc
Confidence            3455566666666664 5555543 33556666666665 56655543 3455666666666666666555411444554


Q ss_pred             ---eEeCCCC-CCCCcch-hccCCCCCc-EEEcCCCccccccCchhhhcCCCccEEeCCCCC-CccCCh-hcccc-Cccc
Q psy3781          78 ---ELNLSSN-KFQQIPK-CIFHLDNLE-ILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN-IRKIPY-ELGLA-QQLH  148 (183)
Q Consensus        78 ---~L~l~~~-~~~~~~~-~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~-~~~~~-~~L~  148 (183)
                         +|++++| .++.++. .+..+++|+ .+++++|.++.+. ...+.. ++|+.+++++|. ++.++. .+..+ ++|+
T Consensus       131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~  208 (239)
T 2xwt_C          131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPS  208 (239)
T ss_dssp             SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred             cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence               6666666 6665544 344566666 7777777666553 333333 667777777773 666643 35666 6777


Q ss_pred             EEeccCCcCCCCcHHH
Q psy3781         149 HLNLVGNCFKYPRQDI  164 (183)
Q Consensus       149 ~l~l~~n~~~~~~~~~  164 (183)
                      .|++++|.+++.+...
T Consensus       209 ~L~l~~N~l~~l~~~~  224 (239)
T 2xwt_C          209 LLDVSQTSVTALPSKG  224 (239)
T ss_dssp             EEECTTCCCCCCCCTT
T ss_pred             EEECCCCccccCChhH
Confidence            7777777776666553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3e-21  Score=136.10  Aligned_cols=161  Identities=19%  Similarity=0.244  Sum_probs=140.7

Q ss_pred             CCccEEecCCCcceecccc-cccCCCccEEEcCCCc-CCCCCc-cccCCCCCceEEcCC-CccccccCcc--ccCCCCeE
Q psy3781           6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNL-IQNLPP-DLLNLRHLVYMNLEN-NKLETIDIDF--NFGHLREL   79 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~-l~~l~~-~~~~~~~L~~L~l~~-n~l~~~~~~~--~~~~L~~L   79 (183)
                      .+++.|++++|.++.+++. +..+++|+.|++++|. ++.+++ .|..+++|++|++++ |.++.++...  .+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            3799999999999998885 4589999999999997 998876 588899999999998 9999988765  88999999


Q ss_pred             eCCCCCCCCcchhccCCCCCc---EEEcCCC-ccccccCchhhhcCCCcc-EEeCCCCCCccCChhccccCcccEEeccC
Q psy3781          80 NLSSNKFQQIPKCIFHLDNLE---ILILNNN-DIEEINQPEKLVKMQKLT-VLDLSNNNIRKIPYELGLAQQLHHLNLVG  154 (183)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~L~---~l~l~~n-~~~~~~~~~~~~~~~~L~-~l~l~~n~l~~~~~~~~~~~~L~~l~l~~  154 (183)
                      ++++|.++.+|. +..+++|+   .+++++| .++.+. +..+..+++|+ .+++++|.++.+|......++|+.|++++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence            999999999876 66778888   9999999 999886 66788999999 99999999999987654458999999999


Q ss_pred             Cc-CCCCcHHHhhhC
Q psy3781         155 NC-FKYPRQDILQKG  168 (183)
Q Consensus       155 n~-~~~~~~~~~~~~  168 (183)
                      |+ +++.++..+...
T Consensus       189 n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGV  203 (239)
T ss_dssp             CTTCCEECTTTTTTC
T ss_pred             CCCcccCCHHHhhcc
Confidence            95 998887777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=3e-20  Score=138.45  Aligned_cols=157  Identities=32%  Similarity=0.350  Sum_probs=107.1

Q ss_pred             cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-cc-CCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCC
Q psy3781           9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LL-NLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSN   84 (183)
Q Consensus         9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~-~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~   84 (183)
                      +.++++++.+..+|..+.  ..++.|++++|.++.++.. +. .+++|++|++++|.++.+++..  .+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            567777777777776553  3567777777777766554 33 6777777777777777766543  6677777777777


Q ss_pred             CCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhc----cccCcccEEeccCCcCCC
Q psy3781          85 KFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL----GLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        85 ~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~----~~~~~L~~l~l~~n~~~~  159 (183)
                      +++.++. .+..+++|+.|++++|.+..+. +..+..+++|+.|++++|.++.+|..+    ..+++|+.|++++|.++.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            7776654 3455777777777777777665 566777777777777777777776653    456777777777777777


Q ss_pred             CcHHHhhhC
Q psy3781         160 PRQDILQKG  168 (183)
Q Consensus       160 ~~~~~~~~~  168 (183)
                      .+...+...
T Consensus       178 l~~~~~~~l  186 (361)
T 2xot_A          178 LPLTDLQKL  186 (361)
T ss_dssp             CCHHHHHHS
T ss_pred             cCHHHhhhc
Confidence            776655443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=2.7e-20  Score=134.87  Aligned_cols=153  Identities=27%  Similarity=0.399  Sum_probs=136.6

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS   82 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~   82 (183)
                      .++++|+.|++++|.+..++. +..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++....+++|++|+++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence            346789999999999998854 6789999999999999998877 88899999999999999987764488999999999


Q ss_pred             CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcH
Q psy3781          83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      +|.++.+ +.+..+++|+.|++++|.++++   ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++.+.
T Consensus       121 ~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~  195 (291)
T 1h6t_A          121 HNGISDI-NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA  195 (291)
T ss_dssp             TSCCCCC-GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred             CCcCCCC-hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence            9999987 4577889999999999999886   568889999999999999998877 8999999999999999988753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1e-19  Score=125.67  Aligned_cols=152  Identities=24%  Similarity=0.314  Sum_probs=127.6

Q ss_pred             ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSN   84 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~   84 (183)
                      -+.+++.++.+..+|..+  .++++.|++++|+++.++.. +..+++|++|++++|.++.++...  .+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            357788888888888766  45899999999999977765 667899999999999999887765  7889999999999


Q ss_pred             CCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCcH
Q psy3781          85 KFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus        85 ~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      .++.++.. +..+++|+.|++++|.++++. +..+..+++|+.|++++|.+++++.. +..+++|+.+++++|++.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            99988664 567889999999999998875 56678899999999999999988765 7888999999999998887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=4.7e-20  Score=140.67  Aligned_cols=159  Identities=25%  Similarity=0.358  Sum_probs=126.0

Q ss_pred             CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCC-------------------------c-cccCCCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLP-------------------------P-DLLNLRHL   54 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~-------------------------~-~~~~~~~L   54 (183)
                      |..+++|+.|++++|.+..+++. +..+++|+.|++++|.++.++                         . .|..+++|
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  187 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL  187 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence            44566666666666666665554 335666666666666554332                         2 35567889


Q ss_pred             ceEEcCCCccccccCccccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC
Q psy3781          55 VYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN  133 (183)
Q Consensus        55 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~  133 (183)
                      ++|++++|.++.++....+++|++|++++|.++.+ +..+..+++|+.|++++|.++++. +..+..+++|+.|++++|.
T Consensus       188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTTSC
T ss_pred             CeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCCCC
Confidence            99999999998887544889999999999999987 456778999999999999999987 7888999999999999999


Q ss_pred             CccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781         134 IRKIPYE-LGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       134 l~~~~~~-~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      ++.++.. +..+++|+.|++++|++...-
T Consensus       267 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          267 LTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CCccChhHhccccCCCEEEcCCCCccCCC
Confidence            9988765 688999999999999987654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.85  E-value=2.9e-20  Score=146.58  Aligned_cols=155  Identities=28%  Similarity=0.347  Sum_probs=124.6

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL   81 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l   81 (183)
                      |..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+..++....+++|+.|++
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L  138 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL  138 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEEC
T ss_pred             HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEEC
Confidence            4567888888888888887776 667888888888888888765 57778888888888888887654337888888888


Q ss_pred             CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781          82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      ++|.++.+ ..+..+++|+.|++++|.+.+..  . +..+++|+.|++++|.+++++ .+..+++|+.|++++|++.+.+
T Consensus       139 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             CCCccCCc-hhhcccCCCCEEECcCCcCCCch--h-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence            88888877 55677888899999988888874  3 778888999999999888874 4788888999999988887765


Q ss_pred             HH
Q psy3781         162 QD  163 (183)
Q Consensus       162 ~~  163 (183)
                      ..
T Consensus       214 ~~  215 (605)
T 1m9s_A          214 IN  215 (605)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=6.1e-20  Score=144.95  Aligned_cols=161  Identities=24%  Similarity=0.329  Sum_probs=85.9

Q ss_pred             CCCCCCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR   77 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~   77 (183)
                      |..+++|+.|++++|.+..+++.. ..+++|+.|++++|.++.+|+. |..+++|++|++++|.+..+++..  .+++|+
T Consensus        95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence            344555555555555555444433 3455555555555555555444 344555555555555555444432  444555


Q ss_pred             eEeCCCCCCCCcc------------------------------------------------------------hhccCCC
Q psy3781          78 ELNLSSNKFQQIP------------------------------------------------------------KCIFHLD   97 (183)
Q Consensus        78 ~L~l~~~~~~~~~------------------------------------------------------------~~~~~~~   97 (183)
                      +|++++|.++.++                                                            ..+..++
T Consensus       175 ~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~  254 (597)
T 3oja_B          175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP  254 (597)
T ss_dssp             EEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCT
T ss_pred             EEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCC
Confidence            5555555443221                                                            1123345


Q ss_pred             CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHH
Q psy3781          98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      +|+.|++++|.+.+.. +..++.+++|+.|++++|.++.+|..+..+++|+.|++++|.+.+.+..
T Consensus       255 ~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~  319 (597)
T 3oja_B          255 GLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN  319 (597)
T ss_dssp             TCSEEECCSSCCCEEE-SGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred             CCCEEECCCCccCCCC-HHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcc
Confidence            5555556666555554 4556666666666666666666555555566666666666666655443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=2.5e-20  Score=136.60  Aligned_cols=170  Identities=21%  Similarity=0.249  Sum_probs=130.1

Q ss_pred             CCCCCccEEecCCCcceecccc-----------------cccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCcc
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSK-----------------LFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKL   64 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~-----------------~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l   64 (183)
                      ..+++|+.|++++|.+..++..                 ...+++|+.|++++|.++.+++ .+..+++|++|++++|.+
T Consensus        77 ~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           77 ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             TTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             hhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            4456666666666665543321                 0125678888888888886654 566788999999999998


Q ss_pred             ccccCcc---ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhc
Q psy3781          65 ETIDIDF---NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL  141 (183)
Q Consensus        65 ~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  141 (183)
                      +.++...   .+++|++|++++|.++.++... .+++|+.|++++|.++++  +..+..+++|+.|++++|.++.+|..+
T Consensus       157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~L~~N~l~~l~~~~  233 (317)
T 3o53_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLVLIEKAL  233 (317)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred             CcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcc--hhhhcccCcccEEECcCCcccchhhHh
Confidence            8765443   5688999999999998775433 478999999999999988  456888999999999999999999989


Q ss_pred             cccCcccEEeccCCcCC-CCcHHHhhhChHHHHHH
Q psy3781         142 GLAQQLHHLNLVGNCFK-YPRQDILQKGTPFLLSY  175 (183)
Q Consensus       142 ~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~~~~~~  175 (183)
                      ..+++|+.+++++|++. +..+..+...+.....+
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence            99999999999999998 55666666655443333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=7.1e-20  Score=140.13  Aligned_cols=160  Identities=26%  Similarity=0.363  Sum_probs=129.7

Q ss_pred             CCCCCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCc--------------------------cccCCCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPP--------------------------DLLNLRHL   54 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~--------------------------~~~~~~~L   54 (183)
                      |..+++|+.|++++|.+..+++..+ .+++|++|++++|.++.++.                          .|..+++|
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  198 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL  198 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence            4566777777777777776666533 56777777777776664433                          25567788


Q ss_pred             ceEEcCCCccccccCccccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCC
Q psy3781          55 VYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN  133 (183)
Q Consensus        55 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~  133 (183)
                      ++|++++|.++.++....+++|++|++++|.++.+ +..+..+++|+.|++++|.++.+. +..+..+++|+.|++++|.
T Consensus       199 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             CEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-HHHhcCCCCCCEEECCCCc
Confidence            89999999988886544889999999999999987 556778999999999999999987 7889999999999999999


Q ss_pred             CccCChh-ccccCcccEEeccCCcCCCCcH
Q psy3781         134 IRKIPYE-LGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus       134 l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      ++.++.. +..+++|+.|++++|++...-.
T Consensus       278 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          278 LSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            9988765 6789999999999999877653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=6.8e-20  Score=135.61  Aligned_cols=155  Identities=25%  Similarity=0.359  Sum_probs=116.3

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL   81 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l   81 (183)
                      +..+++|+.|++++|.+..++. +..+++++.+++++|.++.++. +..+++|++|++++|.++.++....+++|++|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  250 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI  250 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEEC
Confidence            4567888899999888887766 5677888888888888776655 6677788888888888877766227778888888


Q ss_pred             CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCC-hhccccCcccEEeccCCcCCCC
Q psy3781          82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP-YELGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~L~~l~l~~n~~~~~  160 (183)
                      ++|.++.+ +.+..+++|+.|++++|.++++   ..+..+++|+.|++++|.+++.+ ..+..+++|+.|++++|++++.
T Consensus       251 ~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          251 GTNQISDI-NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CSSCCCCC-GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCCccCCC-hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            88877776 3455677888888888877775   34667778888888888777543 4467778888888888887777


Q ss_pred             cH
Q psy3781         161 RQ  162 (183)
Q Consensus       161 ~~  162 (183)
                      ++
T Consensus       327 ~~  328 (347)
T 4fmz_A          327 RP  328 (347)
T ss_dssp             GG
T ss_pred             cC
Confidence            65

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=6.6e-20  Score=144.98  Aligned_cols=152  Identities=20%  Similarity=0.278  Sum_probs=84.2

Q ss_pred             EEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCC
Q psy3781          10 QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKF   86 (183)
Q Consensus        10 ~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~   86 (183)
                      ++++++..++.+|..+.  ++++.|++++|+++.+++ .|.++++|++|++++|.++.+++++  .+++|++|++++|++
T Consensus        35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence            34444445555555431  355666666666665543 3555666666666666666555543  555666666666666


Q ss_pred             CCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCcc--CChhccccCcccEEeccCCcCCCCcHH
Q psy3781          87 QQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK--IPYELGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus        87 ~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      +.++. .+..+++|+.|++++|.++++. +..++.+++|++|++++|.++.  +|..+..+++|++|++++|.+++..+.
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            65544 2344556666666666665553 3445556666666666665553  344455556666666666665555444


Q ss_pred             H
Q psy3781         164 I  164 (183)
Q Consensus       164 ~  164 (183)
                      .
T Consensus       192 ~  192 (635)
T 4g8a_A          192 D  192 (635)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=3.1e-20  Score=146.62  Aligned_cols=158  Identities=21%  Similarity=0.251  Sum_probs=91.6

Q ss_pred             CCCCCccEEecCCCcceeccc--ccccCCCccEEEcCCCcCCC-CCccccCCCCCceEEcCCCcccc--ccCcc-ccCCC
Q psy3781           3 AKEAQVEQADLSYNRLHVVNS--KLFDITSIRELDLSHNLIQN-LPPDLLNLRHLVYMNLENNKLET--IDIDF-NFGHL   76 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~--~~~~~~~l~~l~l~~~~l~~-l~~~~~~~~~L~~L~l~~n~l~~--~~~~~-~~~~L   76 (183)
                      ..+++|+.|++++|.+..+++  .+..+++|+.|++++|.++. .+..+..+++|++|++++|.+..  ++..+ .+++|
T Consensus       396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  475 (606)
T 3vq2_A          396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL  475 (606)
T ss_dssp             TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence            344455555555555443332  23345555555555555542 33345555666666666666554  33334 56666


Q ss_pred             CeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccC-cccEEeccC
Q psy3781          77 RELNLSSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ-QLHHLNLVG  154 (183)
Q Consensus        77 ~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~-~L~~l~l~~  154 (183)
                      ++|++++|.++.++ ..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.++.+|..+..++ +|+.+++++
T Consensus       476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~  554 (606)
T 3vq2_A          476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN  554 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred             CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence            66666666666543 34555666677777766666655 5666666677777777777766666666665 477777777


Q ss_pred             CcCCCCc
Q psy3781         155 NCFKYPR  161 (183)
Q Consensus       155 n~~~~~~  161 (183)
                      |++.+..
T Consensus       555 N~~~c~c  561 (606)
T 3vq2_A          555 NSVACIC  561 (606)
T ss_dssp             CCCCCSS
T ss_pred             CCcccCC
Confidence            7766543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.84  E-value=7.9e-20  Score=137.35  Aligned_cols=159  Identities=21%  Similarity=0.286  Sum_probs=118.7

Q ss_pred             CCCCCCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccC----------
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI----------   69 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~----------   69 (183)
                      |..+++|+.|++++|.+..++..+ ..+++|++|++++|.++.+++ .+..+++|++|++++|.++.++.          
T Consensus       113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~  192 (390)
T 3o6n_A          113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN  192 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred             hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceee
Confidence            566777888888888888777765 467788888888887776544 35666777777777766553221          


Q ss_pred             --------------------------------------------------cc-ccCCCCeEeCCCCCCCCc-chhccCCC
Q psy3781          70 --------------------------------------------------DF-NFGHLRELNLSSNKFQQI-PKCIFHLD   97 (183)
Q Consensus        70 --------------------------------------------------~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~   97 (183)
                                                                        .+ .+++|++|++++|.++.+ +..+..++
T Consensus       193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (390)
T 3o6n_A          193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  272 (390)
T ss_dssp             CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence                                                              11 456788888888888866 45677788


Q ss_pred             CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcH
Q psy3781          98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      +|+.|++++|.++++  +..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+++..+.
T Consensus       273 ~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~  335 (390)
T 3o6n_A          273 RLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL  335 (390)
T ss_dssp             SCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred             cCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCc
Confidence            999999999998887  555677888999999999888888878888888888888888877653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=139.06  Aligned_cols=158  Identities=23%  Similarity=0.317  Sum_probs=103.6

Q ss_pred             CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781           6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL   81 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l   81 (183)
                      ++++.|++++|.+..++. .+.++++|+.|++++|.++.++ ..|..+++|++|++++|.++.++...  .+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            367777777777776665 3456777777777777777554 34666777777777777777666653  6667777777


Q ss_pred             CCCCCCCcch--hccCCCCCcEEEcCCC-ccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCCcC
Q psy3781          82 SSNKFQQIPK--CIFHLDNLEILILNNN-DIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCF  157 (183)
Q Consensus        82 ~~~~~~~~~~--~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~  157 (183)
                      ++|.++.++.  .+..+++|+.|++++| .+..+. +..++.+++|+.+++++|.++.+ |..+..+++|++|++++|.+
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            7777776654  4555677777777776 355554 45666677777777777776644 45566666666666666666


Q ss_pred             CCCcHHH
Q psy3781         158 KYPRQDI  164 (183)
Q Consensus       158 ~~~~~~~  164 (183)
                      ...+...
T Consensus       211 ~~~~~~~  217 (353)
T 2z80_A          211 ILLLEIF  217 (353)
T ss_dssp             TTHHHHH
T ss_pred             ccchhhh
Confidence            5544433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.9e-20  Score=127.75  Aligned_cols=155  Identities=25%  Similarity=0.312  Sum_probs=133.1

Q ss_pred             CCCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781           5 EAQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN   80 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~   80 (183)
                      .++++.|++++|.+..+++.. ..+++|++|++++|+++.++.. |..+++|++|++++|.++.++...  .+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            457999999999999888775 4799999999999999988776 578999999999999999888764  889999999


Q ss_pred             CCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCC
Q psy3781          81 LSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        81 l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~  159 (183)
                      +++|.++.++.. +..+++|+.|++++|.++++. +..+..+++|+.+++++|.+..      .++.++.++++.|.+++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCc
Confidence            999999988764 567899999999999999885 5668889999999999997653      45678888888888887


Q ss_pred             CcHHHhh
Q psy3781         160 PRQDILQ  166 (183)
Q Consensus       160 ~~~~~~~  166 (183)
                      ..+..+.
T Consensus       180 ~ip~~~~  186 (208)
T 2o6s_A          180 VVRNSAG  186 (208)
T ss_dssp             TBBCTTS
T ss_pred             eeeccCc
Confidence            7765544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=9.8e-20  Score=143.78  Aligned_cols=160  Identities=19%  Similarity=0.339  Sum_probs=143.1

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc--cccCCCCCceEEcCCCccccccCc-c-ccCCCCe
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDID-F-NFGHLRE   78 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~   78 (183)
                      ..+++|+.|++++|.+..++..+..+++|+.|++++|.++.+++  .+..+++|++|++++|.+....+. + .+++|++
T Consensus       373 ~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  452 (606)
T 3vq2_A          373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT  452 (606)
T ss_dssp             HCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             ccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence            46789999999999999999888899999999999999986654  688899999999999999875554 4 8899999


Q ss_pred             EeCCCCCCCC--cchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCC
Q psy3781          79 LNLSSNKFQQ--IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGN  155 (183)
Q Consensus        79 L~l~~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n  155 (183)
                      |++++|.++.  ++..+..+++|+.|++++|.+++.. +..++.+++|+.|++++|.++++ |..+..+++|+.|++++|
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence            9999999985  5667788999999999999999886 78899999999999999999976 677899999999999999


Q ss_pred             cCCCCcHH
Q psy3781         156 CFKYPRQD  163 (183)
Q Consensus       156 ~~~~~~~~  163 (183)
                      .++..+..
T Consensus       532 ~l~~~p~~  539 (606)
T 3vq2_A          532 RIETSKGI  539 (606)
T ss_dssp             CCCCEESC
T ss_pred             cCcccCHh
Confidence            99977765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=6.8e-21  Score=141.43  Aligned_cols=83  Identities=23%  Similarity=0.378  Sum_probs=50.4

Q ss_pred             CCCCCCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccC--cc-ccCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDI--DF-NFGHL   76 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~--~~-~~~~L   76 (183)
                      |.++++|+.|++++|.+..+++. +.++++|++|++++|.++.++.. +..+++|++|++++|.++.++.  .+ .+++|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence            45566666777766666655433 44566666666666666666554 5556666666666666665554  22 55555


Q ss_pred             CeEeCCCC
Q psy3781          77 RELNLSSN   84 (183)
Q Consensus        77 ~~L~l~~~   84 (183)
                      ++|++++|
T Consensus       152 ~~L~l~~n  159 (353)
T 2z80_A          152 QILRVGNM  159 (353)
T ss_dssp             CEEEEEES
T ss_pred             cEEECCCC
Confidence            66655555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=1.2e-19  Score=133.52  Aligned_cols=128  Identities=21%  Similarity=0.371  Sum_probs=88.8

Q ss_pred             CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781           6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS   83 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~   83 (183)
                      +.++.|++++|.+..+++ .+.++++|++|++++|.++.+ |..+..+++|++|++++|.++.++.... ++|++|++++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~  130 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHE  130 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCS
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCC
Confidence            579999999999998877 466899999999999999977 6678899999999999999987765542 5667777777


Q ss_pred             CCCCCcch-hccCCCCCcEEEcCCCcccc--ccCchhhhcCCCccEEeCCCCCCc
Q psy3781          84 NKFQQIPK-CIFHLDNLEILILNNNDIEE--INQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      |.++.++. .+..+++|+.|++++|.+..  .. +..+..+++|+.+++++|.++
T Consensus       131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTTCCEEECCSSCCC
T ss_pred             CcccccCHhHhcCCccccEEECCCCcCCccCcC-hhhccCCCCcCEEECCCCccc
Confidence            76665543 34445555555555555542  11 233444444444444444333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=7.6e-21  Score=151.05  Aligned_cols=158  Identities=18%  Similarity=0.289  Sum_probs=118.7

Q ss_pred             CCCCCCccEEecCCCccee------------------cccccc--cCCCccEEEcCCCcCC-CCCccccCCCCCceEEcC
Q psy3781           2 IAKEAQVEQADLSYNRLHV------------------VNSKLF--DITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLE   60 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~------------------l~~~~~--~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~   60 (183)
                      |+++++|+.|++++|.+..                  +|..+.  ++++|++|++++|.+. .+|..+..+++|++|+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            5678889999999998887                  888888  8889999999998866 678788888889999998


Q ss_pred             CCc-ccc--ccCcc-cc------CCCCeEeCCCCCCCCcch--hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEe
Q psy3781          61 NNK-LET--IDIDF-NF------GHLRELNLSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD  128 (183)
Q Consensus        61 ~n~-l~~--~~~~~-~~------~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  128 (183)
                      +|. ++.  +|..+ .+      ++|++|++++|+++.+|.  .+..+++|+.|++++|.+.+.. + .++.+++|+.|+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p-~~~~l~~L~~L~  359 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-P-AFGSEIKLASLN  359 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC-C-CCEEEEEESEEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch-h-hhCCCCCCCEEE
Confidence            887 764  66555 43      788888888888887777  7777888888888888887332 4 566666666666


Q ss_pred             CCCCCCccCChhccccCc-ccEEeccCCcCCCCc
Q psy3781         129 LSNNNIRKIPYELGLAQQ-LHHLNLVGNCFKYPR  161 (183)
Q Consensus       129 l~~n~l~~~~~~~~~~~~-L~~l~l~~n~~~~~~  161 (183)
                      +++|.++.+|..+..+++ |+.|++++|.++..+
T Consensus       360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp  393 (636)
T 4eco_A          360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP  393 (636)
T ss_dssp             CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC
T ss_pred             CCCCccccccHhhhhhcccCcEEEccCCcCcccc
Confidence            666666666666666666 666666666665433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=5.5e-20  Score=134.48  Aligned_cols=156  Identities=17%  Similarity=0.168  Sum_probs=75.6

Q ss_pred             CCCCCccEEecCCCcceecccccccC-----CCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccc---c-Cc--
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDI-----TSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETI---D-ID--   70 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~-----~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~---~-~~--   70 (183)
                      ..+++|+.|++++|.+..+|..+..+     ++|++|++++|+++.++ ..+..+++|++|++++|.+...   + ..  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            34445555555555554443333333     45555555555555443 3344455555555555553321   1 11  


Q ss_pred             cccCCCCeEeCCCCCCCCcc---hh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCc
Q psy3781          71 FNFGHLRELNLSSNKFQQIP---KC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQ  146 (183)
Q Consensus        71 ~~~~~L~~L~l~~~~~~~~~---~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~  146 (183)
                      ..+++|++|++++|.++.++   .. +..+++|+.|++++|.+++......+..+++|+.|++++|.++.+|..+.  ++
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~  275 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK  275 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence            13445555555555555322   11 12345555555555555554311333445556666666666665555443  55


Q ss_pred             ccEEeccCCcCCCC
Q psy3781         147 LHHLNLVGNCFKYP  160 (183)
Q Consensus       147 L~~l~l~~n~~~~~  160 (183)
                      |+.|++++|.+++.
T Consensus       276 L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN  289 (312)
T ss_dssp             EEEEECCSSCCCSC
T ss_pred             ceEEECCCCCCCCC
Confidence            66666666666555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=7e-20  Score=144.82  Aligned_cols=160  Identities=26%  Similarity=0.379  Sum_probs=136.2

Q ss_pred             CccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCC
Q psy3781           7 QVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLS   82 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~   82 (183)
                      +++.|++++|.|+.+++. +.++++|++|++++|+++.+++. |.++++|++|++++|+++.++...  .+.+|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            799999999999999875 55899999999999999988765 788999999999999999998765  88999999999


Q ss_pred             CCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCc----ccEEeccCCc
Q psy3781          83 SNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQ----LHHLNLVGNC  156 (183)
Q Consensus        83 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~----L~~l~l~~n~  156 (183)
                      +|+++.++. .+..+++|+.|++++|.++....+..++.++.|++|++++|.++.++. .+..+.+    ...++++.|.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            999999876 467899999999999999887657888999999999999999997653 3444433    3468888888


Q ss_pred             CCCCcHHHhh
Q psy3781         157 FKYPRQDILQ  166 (183)
Q Consensus       157 ~~~~~~~~~~  166 (183)
                      +...++..+.
T Consensus       213 l~~i~~~~~~  222 (635)
T 4g8a_A          213 MNFIQPGAFK  222 (635)
T ss_dssp             CCEECTTTTT
T ss_pred             ccccCccccc
Confidence            8776665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=2.5e-20  Score=151.82  Aligned_cols=157  Identities=19%  Similarity=0.304  Sum_probs=119.8

Q ss_pred             CCCCCCccEEecCCCccee------------------cccccc--cCCCccEEEcCCCcCC-CCCccccCCCCCceEEcC
Q psy3781           2 IAKEAQVEQADLSYNRLHV------------------VNSKLF--DITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLE   60 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~------------------l~~~~~--~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~   60 (183)
                      |.++++|+.|++++|.+..                  +|..+.  ++++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            4667888888888888887                  788876  8888888888888765 677778888888888888


Q ss_pred             CCc-ccc--ccCcc-c-------cCCCCeEeCCCCCCCCcch--hccCCCCCcEEEcCCCccccccCchhhhcCCCccEE
Q psy3781          61 NNK-LET--IDIDF-N-------FGHLRELNLSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL  127 (183)
Q Consensus        61 ~n~-l~~--~~~~~-~-------~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l  127 (183)
                      +|. ++.  +|..+ .       +++|++|++++|.++.+|.  .+..+++|+.|++++|.++.+  + .++.+++|+.|
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l--p-~~~~L~~L~~L  600 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--E-AFGTNVKLTDL  600 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC--C-CCCTTSEESEE
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc--h-hhcCCCcceEE
Confidence            887 664  55443 3       3478888888888887777  677788888888888887744  4 67777778888


Q ss_pred             eCCCCCCccCChhccccCc-ccEEeccCCcCCCCc
Q psy3781         128 DLSNNNIRKIPYELGLAQQ-LHHLNLVGNCFKYPR  161 (183)
Q Consensus       128 ~l~~n~l~~~~~~~~~~~~-L~~l~l~~n~~~~~~  161 (183)
                      ++++|.++.+|..+..+++ |+.|++++|.+...+
T Consensus       601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             ECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred             ECcCCccccchHHHhhccccCCEEECcCCCCCcCc
Confidence            8888877777777777777 777777777776444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.83  E-value=7.5e-20  Score=140.75  Aligned_cols=159  Identities=26%  Similarity=0.368  Sum_probs=114.8

Q ss_pred             CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781           6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL   81 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l   81 (183)
                      +.++.|++++|.+..+++ .+.++++|++|++++|.++.+ +..|..+++|++|++++|.++.++...  .+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            367778888888876654 455677888888888877755 455777788888888888887777654  6777888888


Q ss_pred             CCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCC
Q psy3781          82 SSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        82 ~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~  159 (183)
                      ++|.+..+ +..+..+++|+.|++++|.+..+. +..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            88877765 335566777888888888777765 56677777788888877777777653 6677777777777777666


Q ss_pred             CcHHHh
Q psy3781         160 PRQDIL  165 (183)
Q Consensus       160 ~~~~~~  165 (183)
                      .++..+
T Consensus       191 ~~~~~~  196 (477)
T 2id5_A          191 IRDYSF  196 (477)
T ss_dssp             ECTTCS
T ss_pred             eChhhc
Confidence            555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.83  E-value=2.4e-19  Score=137.04  Aligned_cols=111  Identities=26%  Similarity=0.401  Sum_probs=53.9

Q ss_pred             CCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEE
Q psy3781          51 LRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL  127 (183)
Q Consensus        51 ~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l  127 (183)
                      +++|++|++++|.+..+++..  .+++|++|++++|.++.+ +..+..+++|+.|++++|.+++.. +..+..+++|++|
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L  376 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKEL  376 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhccccccccEE
Confidence            334444444444444333222  444455555555544443 223344455555555555555443 4445555555555


Q ss_pred             eCCCCCCccCChh-ccccCcccEEeccCCcCCCCcH
Q psy3781         128 DLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus       128 ~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      ++++|.++++|.. +..+++|+.|++++|++.+..+
T Consensus       377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            5555555555433 3455555555555555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=2.1e-19  Score=139.58  Aligned_cols=156  Identities=23%  Similarity=0.315  Sum_probs=134.2

Q ss_pred             CCCCCccEEecCCCccee-cccccccCCCccEEEcCCCcCCCC---CccccCCCCCceEEcCCCcccc-ccCcc--ccCC
Q psy3781           3 AKEAQVEQADLSYNRLHV-VNSKLFDITSIRELDLSHNLIQNL---PPDLLNLRHLVYMNLENNKLET-IDIDF--NFGH   75 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~-l~~~~~~~~~l~~l~l~~~~l~~l---~~~~~~~~~L~~L~l~~n~l~~-~~~~~--~~~~   75 (183)
                      ..+++|+.|++++|.+.. ++..+..+++|+.|++++|+++.+   |..+..+++|++|++++|.+.. ++...  .+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            578899999999999996 677777899999999999999854   4568889999999999999997 77763  7789


Q ss_pred             CCeEeCCCCCCCC-cchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEecc
Q psy3781          76 LRELNLSSNKFQQ-IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLV  153 (183)
Q Consensus        76 L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~  153 (183)
                      |++|++++|.++. ++..+.  ++|+.|++++|.++.+  +..+..+++|+.|++++|.++.+|.. +..+++|+.++++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI--PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC--CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc--chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence            9999999999974 344332  6899999999999977  66677999999999999999999987 8889999999999


Q ss_pred             CCcCCCCcH
Q psy3781         154 GNCFKYPRQ  162 (183)
Q Consensus       154 ~n~~~~~~~  162 (183)
                      +|++.+..+
T Consensus       477 ~N~~~c~c~  485 (520)
T 2z7x_B          477 TNPWDCSCP  485 (520)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCCcccCC
Confidence            999998754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.83  E-value=4.6e-19  Score=141.67  Aligned_cols=121  Identities=28%  Similarity=0.443  Sum_probs=78.7

Q ss_pred             CccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch---------hccCCCCCcEEEcCCCcccccc
Q psy3781          45 PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK---------CIFHLDNLEILILNNNDIEEIN  113 (183)
Q Consensus        45 ~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~---------~~~~~~~L~~l~l~~n~~~~~~  113 (183)
                      |..+..+++|++|++++|.++.+++..  .+++|++|++++|.++.++.         .+..+++|+.|++++|.++.+.
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~  552 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP  552 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence            444556666777777777776666553  66677777777776664421         1345666777777777776654


Q ss_pred             CchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCcHHHhh
Q psy3781         114 QPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       114 ~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                       +..+..+++|+.+++++|.++.+|.. +..+++|+.|++++|.+++.++..+.
T Consensus       553 -~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          553 -VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             -TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             -HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence             44566777777777777777766654 45667777777777777777666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=1.1e-19  Score=135.32  Aligned_cols=155  Identities=27%  Similarity=0.372  Sum_probs=133.7

Q ss_pred             CCccEEecCCCcceecccccc--cCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781           6 AQVEQADLSYNRLHVVNSKLF--DITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN   80 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~--~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~   80 (183)
                      ..++.|++++|.++.++...+  .+++|+.|++++|+++.+++ .|..+++|++|++++|.++.++...  .+++|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            358999999999999887765  79999999999999998875 4888999999999999999988765  889999999


Q ss_pred             CCCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhh---hcCCCccEEeCCCCCCccCChh-ccccCc--ccEEecc
Q psy3781          81 LSSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKL---VKMQKLTVLDLSNNNIRKIPYE-LGLAQQ--LHHLNLV  153 (183)
Q Consensus        81 l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~---~~~~~L~~l~l~~n~l~~~~~~-~~~~~~--L~~l~l~  153 (183)
                      +++|.++.++ ..+..+++|+.|++++|.++.+. ...+   ..+++|+.|++++|.++.++.. +..++.  ++.|+++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence            9999999874 46778999999999999999985 4444   5689999999999999999854 677776  4889999


Q ss_pred             CCcCCCCc
Q psy3781         154 GNCFKYPR  161 (183)
Q Consensus       154 ~n~~~~~~  161 (183)
                      +|++...-
T Consensus       198 ~N~~~C~C  205 (361)
T 2xot_A          198 NNPLECDC  205 (361)
T ss_dssp             SSCEECCH
T ss_pred             CCCccCCc
Confidence            99998764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.82  E-value=1e-19  Score=142.51  Aligned_cols=159  Identities=21%  Similarity=0.428  Sum_probs=116.7

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc--cccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP--DLLNLRHLVYMNLENNKLETIDIDF--NFGHLREL   79 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L   79 (183)
                      .+++|+.|++++|.+..+++.+..+++|+.|++++|.++..++  .+..+++|++|++++|.+....+..  .+++|++|
T Consensus       371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  450 (570)
T 2z63_A          371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  450 (570)
T ss_dssp             TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence            4566666666666666666655567777777777777665433  4666777788888777777554433  67788888


Q ss_pred             eCCCCCCC--CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCc
Q psy3781          80 NLSSNKFQ--QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNC  156 (183)
Q Consensus        80 ~l~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~  156 (183)
                      ++++|.++  .+|..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+++++.. +..+++|+.+++++|+
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCC-hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            88888776  35666777888888888888888776 67778888888888888888877644 7788888888888888


Q ss_pred             CCCCcHH
Q psy3781         157 FKYPRQD  163 (183)
Q Consensus       157 ~~~~~~~  163 (183)
                      +.+..+.
T Consensus       530 ~~~~~~~  536 (570)
T 2z63_A          530 WDCSCPR  536 (570)
T ss_dssp             BCCCTTT
T ss_pred             ccCCCcc
Confidence            8876543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=1.3e-19  Score=138.52  Aligned_cols=115  Identities=26%  Similarity=0.342  Sum_probs=100.8

Q ss_pred             CCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEe
Q psy3781          52 RHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD  128 (183)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~  128 (183)
                      ++|++|++++|.+....+..  .+++|++|++++|.++.++ ..+..+++|+.|++++|.++++. +..++.+++|+.|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-hhHhcCcccCCEEE
Confidence            68999999999998776554  8899999999999999774 46778999999999999998886 78889999999999


Q ss_pred             CCCCCCccC-ChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         129 LSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       129 l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      +++|.++.+ |..+..+++|++|++++|.+++.++..+..
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  393 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR  393 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence            999999976 567899999999999999999988876654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=1.8e-19  Score=142.27  Aligned_cols=160  Identities=21%  Similarity=0.285  Sum_probs=125.1

Q ss_pred             CCCCCCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccC----------
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI----------   69 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~----------   69 (183)
                      |+.+++|+.|++++|.+..+|+.+ ..+++|+.|++++|.++.+++ .+..+++|++|++++|.++.++.          
T Consensus       119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~  198 (597)
T 3oja_B          119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN  198 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEE
T ss_pred             HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhh
Confidence            567788888888888888887775 478888888888888876554 46677777777777776654321          


Q ss_pred             --------------------------------------------------cc-ccCCCCeEeCCCCCCCCc-chhccCCC
Q psy3781          70 --------------------------------------------------DF-NFGHLRELNLSSNKFQQI-PKCIFHLD   97 (183)
Q Consensus        70 --------------------------------------------------~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~   97 (183)
                                                                        .+ .+++|++|++++|.++.+ +..+..++
T Consensus       199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             CCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             cccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence                                                              12 456788888888888866 55677889


Q ss_pred             CCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHH
Q psy3781          98 NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus        98 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      +|+.|++++|.++++  +..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.+.+..
T Consensus       279 ~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~  342 (597)
T 3oja_B          279 RLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS  342 (597)
T ss_dssp             SCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCC
T ss_pred             CCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChh
Confidence            999999999999887  5666778899999999999998888888888888888888888776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=1.1e-19  Score=140.36  Aligned_cols=120  Identities=23%  Similarity=0.331  Sum_probs=73.5

Q ss_pred             ccCCCCCceEEcCCCccccccCc-c--ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCc
Q psy3781          48 LLNLRHLVYMNLENNKLETIDID-F--NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL  124 (183)
Q Consensus        48 ~~~~~~L~~L~l~~n~l~~~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L  124 (183)
                      +..+++|++|++++|.++..++. +  .+++|++|++++|.++.++. ...+++|+.|++++|.++++  +..+..+++|
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L  216 (487)
T 3oja_A          140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM--GPEFQSAAGV  216 (487)
T ss_dssp             GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE--CGGGGGGTTC
T ss_pred             hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCC--CHhHcCCCCc
Confidence            34445555555555555543222 1  34555555555555554433 22356677777777777766  4457777788


Q ss_pred             cEEeCCCCCCccCChhccccCcccEEeccCCcCC-CCcHHHhhhChH
Q psy3781         125 TVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFK-YPRQDILQKGTP  170 (183)
Q Consensus       125 ~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~  170 (183)
                      +.|++++|.++.+|..+..+++|+.+++++|++. +..+..+.....
T Consensus       217 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~  263 (487)
T 3oja_A          217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (487)
T ss_dssp             SEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred             cEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence            8888888888877777777788888888888877 344445544433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=3.1e-19  Score=140.96  Aligned_cols=164  Identities=21%  Similarity=0.302  Sum_probs=107.1

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccc-cccCcc--ccCCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLE-TIDIDF--NFGHLR   77 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~-~~~~~~--~~~~L~   77 (183)
                      |..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.+ +..+..+++|++|++++|.+. .++...  .+++|+
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            5667888888888888888888887888888888888888765 335666777777777777665 444442  666777


Q ss_pred             eEeCCCCCCCCc---chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-C-hhccccCcccEEec
Q psy3781          78 ELNLSSNKFQQI---PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-P-YELGLAQQLHHLNL  152 (183)
Q Consensus        78 ~L~l~~~~~~~~---~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~-~~~~~~~~L~~l~l  152 (183)
                      +|++++|.++.+   +..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.++.. + ..+..+++|+.|++
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC-HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            777777766644   234555666666666666666554 45555566666666666665533 1 22555556666666


Q ss_pred             cCCcCCCCcHHHhh
Q psy3781         153 VGNCFKYPRQDILQ  166 (183)
Q Consensus       153 ~~n~~~~~~~~~~~  166 (183)
                      ++|.+.+..+..+.
T Consensus       433 ~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          433 SHSLLDISSEQLFD  446 (606)
T ss_dssp             TTCCCBTTCTTTTT
T ss_pred             CCCccCCcCHHHHh
Confidence            66655555544443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.82  E-value=1.2e-18  Score=128.96  Aligned_cols=158  Identities=23%  Similarity=0.353  Sum_probs=111.5

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS   83 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~   83 (183)
                      .+++|+.|++++|.+..++. +..+++|+.+++++|.++.++. +..+++|+++++++|.+..++....+++|++|++++
T Consensus       153 ~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          153 NMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN  230 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred             hCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccC
Confidence            44455555555555554443 4455666666666666665544 555666666666666666555422677888888888


Q ss_pred             CCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcHH
Q psy3781          84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      |.++.++. +..+++|+.|++++|.++++   ..+..+++|+.+++++|.+++++ .+..+++|+.|++++|.+.+..+.
T Consensus       231 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          231 NKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             CccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChh
Confidence            88887765 66778888888888888775   35777888999999999888874 478888999999999998888877


Q ss_pred             HhhhC
Q psy3781         164 ILQKG  168 (183)
Q Consensus       164 ~~~~~  168 (183)
                      .+...
T Consensus       306 ~l~~l  310 (347)
T 4fmz_A          306 VIGGL  310 (347)
T ss_dssp             HHHTC
T ss_pred             Hhhcc
Confidence            76654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=6.8e-20  Score=133.98  Aligned_cols=161  Identities=19%  Similarity=0.195  Sum_probs=133.5

Q ss_pred             CCCCccEEecCCCcce-eccccc--ccCCCccEEEcCCCcCCCCCccccCC-----CCCceEEcCCCccccccCc-c-cc
Q psy3781           4 KEAQVEQADLSYNRLH-VVNSKL--FDITSIRELDLSHNLIQNLPPDLLNL-----RHLVYMNLENNKLETIDID-F-NF   73 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~-~l~~~~--~~~~~l~~l~l~~~~l~~l~~~~~~~-----~~L~~L~l~~n~l~~~~~~-~-~~   73 (183)
                      .+++|++|++++|.+. .+|..+  ..+++|+.|++++|.++.+|..+..+     ++|++|++++|.+..+++. + .+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5789999999999998 577776  67999999999999999887777665     8999999999999988854 4 89


Q ss_pred             CCCCeEeCCCCCCCC---cchhc--cCCCCCcEEEcCCCccccccC--chhhhcCCCccEEeCCCCCCccCC--hhcccc
Q psy3781          74 GHLRELNLSSNKFQQ---IPKCI--FHLDNLEILILNNNDIEEINQ--PEKLVKMQKLTVLDLSNNNIRKIP--YELGLA  144 (183)
Q Consensus        74 ~~L~~L~l~~~~~~~---~~~~~--~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~~L~~l~l~~n~l~~~~--~~~~~~  144 (183)
                      ++|++|++++|++..   ++..+  ..+++|+.|++++|.++++..  ...+..+++|+.|++++|.+++.+  ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            999999999999763   23344  678999999999999985420  234467899999999999999755  346678


Q ss_pred             CcccEEeccCCcCCCCcHHH
Q psy3781         145 QQLHHLNLVGNCFKYPRQDI  164 (183)
Q Consensus       145 ~~L~~l~l~~n~~~~~~~~~  164 (183)
                      ++|++|++++|.++..+..+
T Consensus       253 ~~L~~L~Ls~N~l~~ip~~~  272 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQVPKGL  272 (312)
T ss_dssp             TTCCEEECTTSCCSSCCSSC
T ss_pred             CCCCEEECCCCccChhhhhc
Confidence            99999999999999766544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.5e-19  Score=139.36  Aligned_cols=147  Identities=24%  Similarity=0.299  Sum_probs=106.0

Q ss_pred             CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCC
Q psy3781           5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSN   84 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~   84 (183)
                      +++|+.|++++|.++.+|. +..  +|+.|++++|.++.+|.   .+++|++|++++|.++.++.  .+++|++|++++|
T Consensus        99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N  170 (571)
T 3cvr_A           99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNN  170 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred             cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCC
Confidence            3455556666655555555 332  56666666666666555   45667777777777776655  4567888888888


Q ss_pred             CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCc-------cEEeCCCCCCccCChhccccCcccEEeccCCcC
Q psy3781          85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKL-------TVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF  157 (183)
Q Consensus        85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L-------~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~  157 (183)
                      .++.+|. +.  ++|+.|++++|.++.++  . +..  +|       +.|++++|.++.+|..+..+++|+.|++++|++
T Consensus       171 ~L~~lp~-l~--~~L~~L~Ls~N~L~~lp--~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          171 QLTFLPE-LP--ESLEALDVSTNLLESLP--A-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CCSCCCC-CC--TTCCEEECCSSCCSSCC--C-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             CCCCcch-hh--CCCCEEECcCCCCCchh--h-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence            8888776 44  78889999999888763  3 433  66       999999999999999888899999999999999


Q ss_pred             CCCcHHHhhh
Q psy3781         158 KYPRQDILQK  167 (183)
Q Consensus       158 ~~~~~~~~~~  167 (183)
                      ++..+..+.+
T Consensus       243 ~~~~p~~l~~  252 (571)
T 3cvr_A          243 SSRIRESLSQ  252 (571)
T ss_dssp             CHHHHHHHHH
T ss_pred             CCcCHHHHHH
Confidence            9888776655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=3e-19  Score=141.92  Aligned_cols=134  Identities=21%  Similarity=0.272  Sum_probs=79.9

Q ss_pred             CCCccEEEcCCCcCCCCCcccc-CCCCCceEEcCCCccccccCcc-c-cC-------CCCeEeCCCCCCCCcchhcc--C
Q psy3781          28 ITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDIDF-N-FG-------HLRELNLSSNKFQQIPKCIF--H   95 (183)
Q Consensus        28 ~~~l~~l~l~~~~l~~l~~~~~-~~~~L~~L~l~~n~l~~~~~~~-~-~~-------~L~~L~l~~~~~~~~~~~~~--~   95 (183)
                      +.+|+.|++++|.++.+|..+. .+++|++|++++|.++.++... . ..       +|++|++++|+++.+|..++  .
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  511 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT  511 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred             CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence            3455555555555555554432 3566666666666666555544 1 11       66666666666666666555  5


Q ss_pred             CCCCcEEEcCCCccccccCchhhhcCCCccEEeCC------CCCCc-cCChhccccCcccEEeccCCcCCCCcHH
Q psy3781          96 LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS------NNNIR-KIPYELGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus        96 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~------~n~l~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      +++|+.|++++|.++++  +..+..+++|+.|+++      +|.+. .+|..+..+++|+.|++++|.++..+..
T Consensus       512 l~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~  584 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSKF--PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK  584 (636)
T ss_dssp             CTTCCEEECCSSCCSSC--CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred             CCCcCEEECCCCCCCCc--ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh
Confidence            66667777777766664  5566666677777663      34433 5566666677777777777776544443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.81  E-value=9.8e-19  Score=136.55  Aligned_cols=151  Identities=19%  Similarity=0.336  Sum_probs=87.8

Q ss_pred             CCCccEEecCCCcceeccc---ccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781           5 EAQVEQADLSYNRLHVVNS---KLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL   81 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~---~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l   81 (183)
                      +++|+.|++++|.+..++.   .+..+++|+.|++++|+++.+|..+..+++|++|++++|.++.++... .++|++|++
T Consensus       360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~L  438 (549)
T 2z81_A          360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDV  438 (549)
T ss_dssp             STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCSEEEC
T ss_pred             cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh-cCCceEEEC
Confidence            3444444444444443321   133344444444444444444444444444444444444444333222 134555555


Q ss_pred             CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCC
Q psy3781          82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~  160 (183)
                      ++|+++.++   ..+++|+.|++++|.++.+  +. ...+++|+.|++++|.++.++.. +..+++|+.+++++|++.+.
T Consensus       439 s~N~l~~~~---~~l~~L~~L~Ls~N~l~~i--p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          439 SNNNLDSFS---LFLPRLQELYISRNKLKTL--PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             CSSCCSCCC---CCCTTCCEEECCSSCCSSC--CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             CCCChhhhc---ccCChhcEEECCCCccCcC--CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            555554432   2567788888888888765  33 45678888888888888876654 77888888888888888776


Q ss_pred             cH
Q psy3781         161 RQ  162 (183)
Q Consensus       161 ~~  162 (183)
                      .+
T Consensus       513 ~~  514 (549)
T 2z81_A          513 CP  514 (549)
T ss_dssp             HH
T ss_pred             Cc
Confidence            65

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=1.1e-18  Score=136.84  Aligned_cols=156  Identities=21%  Similarity=0.241  Sum_probs=134.1

Q ss_pred             CCCCCccEEecCCCccee-cccccccCCCccEEEcCCCcCCCCC---ccccCCCCCceEEcCCCcccc-ccCcc--ccCC
Q psy3781           3 AKEAQVEQADLSYNRLHV-VNSKLFDITSIRELDLSHNLIQNLP---PDLLNLRHLVYMNLENNKLET-IDIDF--NFGH   75 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~-l~~~~~~~~~l~~l~l~~~~l~~l~---~~~~~~~~L~~L~l~~n~l~~-~~~~~--~~~~   75 (183)
                      ..+++|+.|++++|.+.. ++..+..+++|+.|++++|+++.++   ..+..+++|++|++++|.++. ++...  .+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            567899999999999996 6667778999999999999999765   457889999999999999987 77764  7899


Q ss_pred             CCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEecc
Q psy3781          76 LRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLV  153 (183)
Q Consensus        76 L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~  153 (183)
                      |++|++++|.++.. +..+.  ++|+.|++++|.++.+  +..+..+++|+.|++++|.++.+|.. +..+++|+.++++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI--PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC--CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc--ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence            99999999999743 33332  6899999999999987  56666999999999999999999987 8899999999999


Q ss_pred             CCcCCCCcH
Q psy3781         154 GNCFKYPRQ  162 (183)
Q Consensus       154 ~n~~~~~~~  162 (183)
                      +|++.+..+
T Consensus       506 ~N~~~c~c~  514 (562)
T 3a79_B          506 DNPWDCTCP  514 (562)
T ss_dssp             SCCBCCCHH
T ss_pred             CCCcCCCcc
Confidence            999998654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=8.6e-20  Score=133.32  Aligned_cols=155  Identities=14%  Similarity=0.150  Sum_probs=109.2

Q ss_pred             CCCCCccEEecCCCcceecc-----cccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCcccc---ccCcc--
Q psy3781           3 AKEAQVEQADLSYNRLHVVN-----SKLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLET---IDIDF--   71 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~-----~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~---~~~~~--   71 (183)
                      ..+++|+.|++++|.+....     ..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+..   ++...  
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            56778888888888877421     22335778888888888887655 456678888888888887653   22222  


Q ss_pred             -ccCCCCeEeCCCCCCCCcchh----ccCCCCCcEEEcCCCccccccCchhhhcC---CCccEEeCCCCCCccCChhccc
Q psy3781          72 -NFGHLRELNLSSNKFQQIPKC----IFHLDNLEILILNNNDIEEINQPEKLVKM---QKLTVLDLSNNNIRKIPYELGL  143 (183)
Q Consensus        72 -~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~l~l~~n~~~~~~~~~~~~~~---~~L~~l~l~~n~l~~~~~~~~~  143 (183)
                       .+++|++|++++|+++.++..    +..+++|+.|++++|.+++.. +..+..+   ++|++|++++|.++.+|..+. 
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-  271 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-  271 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCCCCchhhhhc-
Confidence             567788888888888765442    345678888888888887764 4445554   578888888888887776653 


Q ss_pred             cCcccEEeccCCcCCCC
Q psy3781         144 AQQLHHLNLVGNCFKYP  160 (183)
Q Consensus       144 ~~~L~~l~l~~n~~~~~  160 (183)
                       ++|+.|++++|.+++.
T Consensus       272 -~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          272 -AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             -SCCSCEECCSCCCCSC
T ss_pred             -CCCCEEECCCCcCCCC
Confidence             6788888888887774

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=4e-19  Score=140.12  Aligned_cols=152  Identities=28%  Similarity=0.397  Sum_probs=136.1

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS   82 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~   82 (183)
                      ..+..|+.|++.+|.+..++ .+..+++|+.|++++|.++.+++ +..+++|+.|++++|.+..++....+++|++|+++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE  117 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence            34678999999999999886 47789999999999999998877 88899999999999999987743389999999999


Q ss_pred             CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781          83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      +|.++.++ .+..+++|+.|++++|.++++   ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.+.+.+
T Consensus       118 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          118 HNGISDIN-GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             TSCCCCCG-GGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             CCCCCCCc-cccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence            99999874 477899999999999999886   568889999999999999998877 899999999999999998874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=6.3e-19  Score=135.62  Aligned_cols=133  Identities=24%  Similarity=0.363  Sum_probs=84.8

Q ss_pred             CCCCCCccEEecCCCcceec-ccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781           2 IAKEAQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLR   77 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~   77 (183)
                      |..+++|+.|++++|.+..+ +..+.++++|+.|++++|.++.++.. |..+++|++|++++|.+..+.+..  .+++|+
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  131 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK  131 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence            56677888888888888766 44455777888888888887777654 566777777777777777654433  666677


Q ss_pred             eEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781          78 ELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        78 ~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      +|++++|.++.++. .+..+++|+.|++++|.++++. +..+..+++|+.|++++|.++
T Consensus       132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCC
T ss_pred             EEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCc
Confidence            77777666665432 4445566666666666665543 333444444444444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=2.1e-19  Score=140.78  Aligned_cols=165  Identities=25%  Similarity=0.376  Sum_probs=141.6

Q ss_pred             CCCCCccEEecCCCcceec---ccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccC--cc-ccCCC
Q psy3781           3 AKEAQVEQADLSYNRLHVV---NSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI--DF-NFGHL   76 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l---~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~~-~~~~L   76 (183)
                      ..+++|+.|++++|.+...   +..+..+++|+.+++++|.++.++..+..+++|++|++++|.+...++  .+ .+++|
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            4578899999999988855   556668999999999999999888778899999999999999987654  33 88999


Q ss_pred             CeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccC
Q psy3781          77 RELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVG  154 (183)
Q Consensus        77 ~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~  154 (183)
                      ++|++++|.+... +..+..+++|+.|++++|.+.+...+..+..+++|+.|++++|.++++ |..+..+++|+.|++++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            9999999999865 456777999999999999997422278889999999999999999977 67789999999999999


Q ss_pred             CcCCCCcHHHhhh
Q psy3781         155 NCFKYPRQDILQK  167 (183)
Q Consensus       155 n~~~~~~~~~~~~  167 (183)
                      |.+++.++..+.+
T Consensus       504 n~l~~~~~~~~~~  516 (570)
T 2z63_A          504 NQLKSVPDGIFDR  516 (570)
T ss_dssp             SCCSCCCTTTTTT
T ss_pred             CcCCCCCHHHhhc
Confidence            9999998876654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=1.3e-18  Score=121.91  Aligned_cols=131  Identities=24%  Similarity=0.335  Sum_probs=118.2

Q ss_pred             CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781           6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL   81 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l   81 (183)
                      ++++.|++++|.+..+++. +..+++|+.|++++|+++.++.. |..+++|++|++++|.++.++...  .+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            5799999999999987554 55899999999999999988865 678999999999999999988765  7899999999


Q ss_pred             CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC
Q psy3781          82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI  137 (183)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~  137 (183)
                      ++|+++.+|..+..+++|+.|++++|.++.+. +..+..+++|+.+++++|.++.-
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCcccccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCccCC
Confidence            99999999988889999999999999999886 57788899999999999998843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=5.4e-19  Score=144.06  Aligned_cols=87  Identities=26%  Similarity=0.415  Sum_probs=47.8

Q ss_pred             CCCCccEEecCCCcceeccc--ccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCC-CCeE
Q psy3781           4 KEAQVEQADLSYNRLHVVNS--KLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGH-LREL   79 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~--~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~-L~~L   79 (183)
                      .+++|+.|++++|.+..+|.  .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..++..+ .+++ |++|
T Consensus       546 ~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             TTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred             ccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence            34455555555555555555  4555555555555555555555 4555555555555555555555444 4444 5555


Q ss_pred             eCCCCCCCCcch
Q psy3781          80 NLSSNKFQQIPK   91 (183)
Q Consensus        80 ~l~~~~~~~~~~   91 (183)
                      ++++|.++.+|.
T Consensus       625 ~Ls~N~L~~lp~  636 (876)
T 4ecn_A          625 GFSHNKLKYIPN  636 (876)
T ss_dssp             ECCSSCCCSCCS
T ss_pred             ECcCCCCCcCch
Confidence            555555554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=1.5e-19  Score=129.24  Aligned_cols=146  Identities=21%  Similarity=0.393  Sum_probs=129.1

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSN   84 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~   84 (183)
                      .++..+++.++.+.+++ .+.++++|+.|++++|.++.++ .+..+++|++|++++|.++.+++ + .+++|++|++++|
T Consensus        19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence            34556778888888777 4668999999999999999887 68889999999999999999887 6 8999999999999


Q ss_pred             CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCC
Q psy3781          85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus        85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~  160 (183)
                      +++.++....  ++|+.|++++|.++++   ..+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+.+.
T Consensus        96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           96 RLKNLNGIPS--ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CCSCCTTCCC--SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             ccCCcCcccc--CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence            9998866433  8999999999999986   35888999999999999999986 588999999999999999887

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.80  E-value=3.8e-19  Score=118.85  Aligned_cols=133  Identities=24%  Similarity=0.267  Sum_probs=103.3

Q ss_pred             CCCccEEEcCCCcCC--CCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCC-cchhccCCCCCcEEE
Q psy3781          28 ITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQ-IPKCIFHLDNLEILI  103 (183)
Q Consensus        28 ~~~l~~l~l~~~~l~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~  103 (183)
                      .++++.|++++|.++  .+|..+..+++|++|++++|.++.+ ..+ .+++|++|++++|.++. ++..+..+++|+.|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            467888888888887  7777777788888888888888877 444 77888888888888886 555555578888888


Q ss_pred             cCCCccccccCchhhhcCCCccEEeCCCCCCccCCh----hccccCcccEEeccCCcCCCCc
Q psy3781         104 LNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY----ELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       104 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~----~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      +++|.++++.....+..+++|+.|++++|.++.++.    .+..+++|+.|++++|.+...+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            888888876423677788888888888888887776    5778888888888888776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=8.2e-19  Score=137.00  Aligned_cols=156  Identities=24%  Similarity=0.320  Sum_probs=106.9

Q ss_pred             CCCCccEEecCCCccee-cc---cccccCCCccEEEcCCCcCCCCCc---cccCCCCCceEEcCCCccccccCcc-ccCC
Q psy3781           4 KEAQVEQADLSYNRLHV-VN---SKLFDITSIRELDLSHNLIQNLPP---DLLNLRHLVYMNLENNKLETIDIDF-NFGH   75 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~-l~---~~~~~~~~l~~l~l~~~~l~~l~~---~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~   75 (183)
                      .+++|+.|++++|.+.. ++   ..+..+++|+.|++++|+++.++.   .+..+++|++|++++|.++.++..+ .+++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~  411 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK  411 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence            35566666666666653 22   123455666666666666665442   3555666667777666666666555 5566


Q ss_pred             CCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCC
Q psy3781          76 LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN  155 (183)
Q Consensus        76 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n  155 (183)
                      |++|++++|.++.++..+.  ++|+.|++++|.+++.  +   ..+++|++|++++|.++.+|. ...+++|+.|++++|
T Consensus       412 L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~--~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N  483 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSF--S---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRN  483 (549)
T ss_dssp             CCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCC--C---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSS
T ss_pred             ccEEECCCCCcccccchhc--CCceEEECCCCChhhh--c---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCC
Confidence            6777777766665554332  4677777777766654  2   467899999999999999987 567899999999999


Q ss_pred             cCCCCcHHHhhh
Q psy3781         156 CFKYPRQDILQK  167 (183)
Q Consensus       156 ~~~~~~~~~~~~  167 (183)
                      .+++.++..+..
T Consensus       484 ~l~~~~~~~~~~  495 (549)
T 2z81_A          484 QLKSVPDGIFDR  495 (549)
T ss_dssp             CCCCCCTTGGGG
T ss_pred             ccCCcCHHHHhc
Confidence            999998876654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=8.1e-19  Score=129.24  Aligned_cols=161  Identities=22%  Similarity=0.308  Sum_probs=114.4

Q ss_pred             CCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781           6 AQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS   83 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~   83 (183)
                      ++++.|++++|.+..+++ .+.++++|+.|++++|.++.+ +..+..+++|++|++++|.++.++.... ++|++|++++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~  132 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHD  132 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCS
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCC
Confidence            467888888888887755 456788888888888888866 5567778888888888888887776554 6788888888


Q ss_pred             CCCCCcch-hccCCCCCcEEEcCCCccccccC-chhhhcC--------------------CCccEEeCCCCCCccCC-hh
Q psy3781          84 NKFQQIPK-CIFHLDNLEILILNNNDIEEINQ-PEKLVKM--------------------QKLTVLDLSNNNIRKIP-YE  140 (183)
Q Consensus        84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~--------------------~~L~~l~l~~n~l~~~~-~~  140 (183)
                      |.++.++. .+..+++|+.|++++|.++..+. +..+..+                    ++|+.|++++|.++.++ ..
T Consensus       133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~  212 (332)
T 2ft3_A          133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED  212 (332)
T ss_dssp             SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTS
T ss_pred             CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHH
Confidence            88887765 35668888888888888754210 2333332                    34555666666666554 34


Q ss_pred             ccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         141 LGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       141 ~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      +..+++|+.|++++|.+.+.++..+..
T Consensus       213 l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             STTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             hcCCCCCCEEECCCCcCCcCChhHhhC
Confidence            667777778888888777777655544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.80  E-value=1.9e-18  Score=132.64  Aligned_cols=151  Identities=28%  Similarity=0.395  Sum_probs=73.2

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS   83 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~   83 (183)
                      .+++|+.|++++|.+..++ .+..+++|+.|++++|.++.+++ +..+++|++|++++|.+..++....+++|++|++++
T Consensus       219 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          219 ILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  296 (466)
T ss_dssp             GCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             ccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCC
Confidence            3455666666666555442 23445555555555555554433 444555555555555555444422445555555555


Q ss_pred             CCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781          84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      |.++.++. +..+++|+.|++++|.+.+.. +  +..+++|+.|++++|.+++++ .+..+++|+.|++++|.+.+..
T Consensus       297 n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          297 NQLEDISP-ISNLKNLTYLTLYFNNISDIS-P--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             SCCSCCGG-GGGCTTCSEEECCSSCCSCCG-G--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG
T ss_pred             CcccCchh-hcCCCCCCEEECcCCcCCCch-h--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccc
Confidence            55554433 334445555555555544442 1  334444444444444444432 2344444444444444444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.80  E-value=5.9e-19  Score=117.89  Aligned_cols=135  Identities=22%  Similarity=0.260  Sum_probs=119.3

Q ss_pred             CCCCccEEecCCCcce--ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccc-cCcc-ccCCCCeE
Q psy3781           4 KEAQVEQADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETI-DIDF-NFGHLREL   79 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~-~~~~-~~~~L~~L   79 (183)
                      ..++++.|++++|.+.  .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+... +..+ .+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3478999999999998  8888878899999999999999988 7788899999999999999984 4444 69999999


Q ss_pred             eCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccCc---hhhhcCCCccEEeCCCCCCccCChh
Q psy3781          80 NLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQP---EKLVKMQKLTVLDLSNNNIRKIPYE  140 (183)
Q Consensus        80 ~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~l~~n~l~~~~~~  140 (183)
                      ++++|.++.++  ..+..+++|+.|++++|.+++.. +   ..+..+++|+.|++++|.++++|..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            99999999876  57778999999999999999884 3   4788899999999999999988764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.80  E-value=2.9e-18  Score=135.37  Aligned_cols=65  Identities=26%  Similarity=0.358  Sum_probs=26.5

Q ss_pred             CCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCCcCCCCcH
Q psy3781          96 LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus        96 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      +++|+.|++++|.+++.. +..++.+++|+.|++++|.++.+ |..+..++.| .|++++|.+++.++
T Consensus       475 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          475 LGRLEILVLSFCDLSSID-QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             CCCccEEECCCCccCccC-hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence            344444444444444333 33344444444444444444422 2233444444 44444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.79  E-value=4.9e-19  Score=142.44  Aligned_cols=171  Identities=23%  Similarity=0.312  Sum_probs=113.6

Q ss_pred             CCccEEecCCCcceecccccccCCCccE-----EEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeE
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRE-----LDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLREL   79 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~-----l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L   79 (183)
                      +.++.+++.++.+...+..+.....|+.     +++..+.+...+..+..++.|+.|++++|.+..++..+ .+++|++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            3467788888887776665554433333     33444555555666888999999999999999998877 89999999


Q ss_pred             eCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCC
Q psy3781          80 NLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~  159 (183)
                      ++++|.++.+|..+..+++|+.|++++|.++.+  +..++.+++|++|++++|.++.+|..+..+++|+.|++++|.+.+
T Consensus       253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL--PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC--CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             EeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc--ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            999999999998888999999999999999976  788999999999999999999999999999999999999999999


Q ss_pred             CcHHHhhhCh-HHHHHHHhh
Q psy3781         160 PRQDILQKGT-PFLLSYLRD  178 (183)
Q Consensus       160 ~~~~~~~~~~-~~~~~~l~~  178 (183)
                      .++..+.... .....++++
T Consensus       331 ~~p~~~~~~~~~~~~l~l~~  350 (727)
T 4b8c_D          331 QFLKILTEKSVTGLIFYLRD  350 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHhhcchhhhHHhhcc
Confidence            9988886653 333345554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=2.2e-18  Score=137.76  Aligned_cols=161  Identities=27%  Similarity=0.335  Sum_probs=135.4

Q ss_pred             CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCc-c-ccCCCCeEeC
Q psy3781           6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDID-F-NFGHLRELNL   81 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~L~l   81 (183)
                      ++++.|++++|.+..+++. +.++++|+.|++++|.++.+ +..+..+++|++|++++|.++.++.. + .+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            4789999999999987765 55789999999999999866 44577899999999999999988875 4 8889999999


Q ss_pred             CCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh-c--cccCcccEEeccCCcC
Q psy3781          82 SSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-L--GLAQQLHHLNLVGNCF  157 (183)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~--~~~~~L~~l~l~~n~~  157 (183)
                      ++|.++.+++ .+..+++|+.|++++|.+.+.. +..++.+++|++|++++|.++.++.. +  ..+++|+.|++++|.+
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            9999988764 6778899999999999998876 67788899999999999999877654 3  3568899999999999


Q ss_pred             CCCcHHHhhh
Q psy3781         158 KYPRQDILQK  167 (183)
Q Consensus       158 ~~~~~~~~~~  167 (183)
                      .+.++..+..
T Consensus       184 ~~~~~~~~~~  193 (680)
T 1ziw_A          184 KEFSPGCFHA  193 (680)
T ss_dssp             CCBCTTGGGG
T ss_pred             cccChhhhhh
Confidence            8888776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=8.1e-19  Score=128.54  Aligned_cols=158  Identities=25%  Similarity=0.238  Sum_probs=121.1

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-----------------ccCCCCCceEEcCCCcc
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-----------------LLNLRHLVYMNLENNKL   64 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-----------------~~~~~~L~~L~l~~n~l   64 (183)
                      |..+++|+.|++++|.+..+++ +..+++|++|++++|.++.++..                 ...+++|++|++++|.+
T Consensus        54 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l  132 (317)
T 3o53_A           54 LAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKI  132 (317)
T ss_dssp             HTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCC
T ss_pred             hhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCC
Confidence            5678999999999999997665 67889999999999987754321                 12355677777777777


Q ss_pred             ccccCcc--ccCCCCeEeCCCCCCCCcc-hhcc-CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781          65 ETIDIDF--NFGHLRELNLSSNKFQQIP-KCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE  140 (183)
Q Consensus        65 ~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  140 (183)
                      +.+++..  .+++|++|++++|.++.++ ..+. .+++|+.|++++|.++++.   ....+++|+.|++++|.++.++..
T Consensus       133 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~l~~L~~L~Ls~N~l~~l~~~  209 (317)
T 3o53_A          133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK---GQVVFAKLKTLDLSSNKLAFMGPE  209 (317)
T ss_dssp             CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE---CCCCCTTCCEEECCSSCCCEECGG
T ss_pred             CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc---cccccccCCEEECCCCcCCcchhh
Confidence            7766543  6788888888888888653 3343 5788888888888887762   223478899999999999888888


Q ss_pred             ccccCcccEEeccCCcCCCCcHH
Q psy3781         141 LGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus       141 ~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      +..+++|+.|++++|.+++.+..
T Consensus       210 ~~~l~~L~~L~L~~N~l~~l~~~  232 (317)
T 3o53_A          210 FQSAAGVTWISLRNNKLVLIEKA  232 (317)
T ss_dssp             GGGGTTCSEEECTTSCCCEECTT
T ss_pred             hcccCcccEEECcCCcccchhhH
Confidence            88889999999999988865543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.79  E-value=5.5e-18  Score=130.11  Aligned_cols=151  Identities=28%  Similarity=0.379  Sum_probs=77.4

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS   82 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~   82 (183)
                      ..+++|+.|++++|.+..++. +..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++....+++|++|+++
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          174 ANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA  251 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             ccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence            445666666666666665432 4455666666666665554433 33445555555555554444321144444444444


Q ss_pred             CC----------------------CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781          83 SN----------------------KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE  140 (183)
Q Consensus        83 ~~----------------------~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  140 (183)
                      +|                      .++.++. +..+++|+.|++++|.+++..  . +..+++|+.|++++|.+++++. 
T Consensus       252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~-  326 (466)
T 1o6v_A          252 NNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--P-ISNLKNLTYLTLYFNNISDISP-  326 (466)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--G-GGGCTTCSEEECCSSCCSCCGG-
T ss_pred             CCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch--h-hcCCCCCCEEECcCCcCCCchh-
Confidence            44                      4444433 334445555555555554442  1 4445555555555555554433 


Q ss_pred             ccccCcccEEeccCCcCCCC
Q psy3781         141 LGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus       141 ~~~~~~L~~l~l~~n~~~~~  160 (183)
                      +..+++|+.|++++|.+.+.
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC
T ss_pred             hccCccCCEeECCCCccCCc
Confidence            44555555566655555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=2.5e-19  Score=130.82  Aligned_cols=150  Identities=23%  Similarity=0.244  Sum_probs=71.9

Q ss_pred             CCCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCC---CCcc--ccCCCCCceEEcCCCccccccCc----c-cc
Q psy3781           5 EAQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQN---LPPD--LLNLRHLVYMNLENNKLETIDID----F-NF   73 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~---l~~~--~~~~~~L~~L~l~~n~l~~~~~~----~-~~   73 (183)
                      +++|+.|++++|.+..+++ .+..+++|++|++++|++..   ++..  +..+++|++|++++|.++.++..    + .+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            4455555555555554433 23345555555555555431   2111  23445555555555555443332    1 34


Q ss_pred             CCCCeEeCCCCCCCCc-chhccCC---CCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccE
Q psy3781          74 GHLRELNLSSNKFQQI-PKCIFHL---DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHH  149 (183)
Q Consensus        74 ~~L~~L~l~~~~~~~~-~~~~~~~---~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~  149 (183)
                      ++|++|++++|.++.. |..+..+   ++|+.|++++|.++.+  +..+.  ++|+.|++++|.++.+|. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l--p~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV--PKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC--CSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch--hhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence            5555555555555543 3333332   3555555555555544  22221  455555555555555433 344555555


Q ss_pred             EeccCCcCCC
Q psy3781         150 LNLVGNCFKY  159 (183)
Q Consensus       150 l~l~~n~~~~  159 (183)
                      |++++|+++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            5555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=2.2e-18  Score=120.06  Aligned_cols=129  Identities=24%  Similarity=0.380  Sum_probs=116.3

Q ss_pred             CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781           6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL   81 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l   81 (183)
                      ++++.|++++|.+..+++. +..+++|+.|++++|.++.+ +..|.++++|++|++++|.++.++...  .+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            4799999999999988875 55799999999999999976 567889999999999999999999875  7899999999


Q ss_pred             CCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781          82 SSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        82 ~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      ++|.++.++ ..+..+++|+.|++++|.++.+. +..+..+++|+.+++++|.+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcC
Confidence            999999885 46778999999999999999986 667888999999999999986

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.79  E-value=5.8e-18  Score=129.72  Aligned_cols=152  Identities=23%  Similarity=0.286  Sum_probs=103.3

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccC------------
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI------------   69 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~------------   69 (183)
                      +..+++|+.|++++|.+..++  +..+++|++|++++|.++.++  +..+++|++|++++|.++.++.            
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~  156 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCH  156 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECT
T ss_pred             cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECC
Confidence            345667777777777777653  556677777777777776654  5566666666666666654421            


Q ss_pred             --------cc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh
Q psy3781          70 --------DF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE  140 (183)
Q Consensus        70 --------~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~  140 (183)
                              .+ .+++|++|++++|+++.++  +..+++|+.|++++|.++++    .++.+++|+.|++++|.++++|  
T Consensus       157 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~ip--  228 (457)
T 3bz5_A          157 LNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEID--  228 (457)
T ss_dssp             TCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC--
T ss_pred             CCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccccC--
Confidence                    12 4456666666666666654  45566777777777777665    2566788888888888888876  


Q ss_pred             ccccCcccEEeccCCcCCCCcHHHh
Q psy3781         141 LGLAQQLHHLNLVGNCFKYPRQDIL  165 (183)
Q Consensus       141 ~~~~~~L~~l~l~~n~~~~~~~~~~  165 (183)
                      +..+++|+.|++++|.+++.+...+
T Consensus       229 ~~~l~~L~~L~l~~N~l~~~~~~~l  253 (457)
T 3bz5_A          229 VTPLTQLTYFDCSVNPLTELDVSTL  253 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred             ccccCCCCEEEeeCCcCCCcCHHHC
Confidence            6778888888888888887765433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=1.5e-18  Score=134.83  Aligned_cols=153  Identities=27%  Similarity=0.267  Sum_probs=130.0

Q ss_pred             cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccC-cc-ccCCCCeEeCCCCC
Q psy3781           9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDI-DF-NFGHLRELNLSSNK   85 (183)
Q Consensus         9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~-~~-~~~~L~~L~l~~~~   85 (183)
                      +.+++++|.++.+|..+.  ++++.|++++|.++.+++ .|..+++|++|++++|.++.+.+ .+ .+++|++|++++|+
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            578999999999998775  899999999999997764 68889999999999999998855 44 88999999999999


Q ss_pred             CCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcc--cEEeccCCcC--CCCc
Q psy3781          86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQL--HHLNLVGNCF--KYPR  161 (183)
Q Consensus        86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L--~~l~l~~n~~--~~~~  161 (183)
                      ++.+|..  .+++|++|++++|.++++..+..++.+++|++|++++|.++.  ..+..+++|  +.+++++|.+  .+..
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~  156 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKED  156 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred             eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccc
Confidence            9988776  789999999999999886546889999999999999999886  346777778  9999999988  6665


Q ss_pred             HHHhhh
Q psy3781         162 QDILQK  167 (183)
Q Consensus       162 ~~~~~~  167 (183)
                      +..+..
T Consensus       157 ~~~l~~  162 (520)
T 2z7x_B          157 PEGLQD  162 (520)
T ss_dssp             TTTTTT
T ss_pred             cccccc
Confidence            555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.78  E-value=1.7e-18  Score=113.44  Aligned_cols=126  Identities=25%  Similarity=0.310  Sum_probs=101.8

Q ss_pred             CCCccEEEcCCCcCC--CCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCC-cchhccCCCCCcEEE
Q psy3781          28 ITSIRELDLSHNLIQ--NLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQ-IPKCIFHLDNLEILI  103 (183)
Q Consensus        28 ~~~l~~l~l~~~~l~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~  103 (183)
                      .++++.+++++|.++  .+|..+..+++|++|++++|.++.+ ..+ .+++|++|++++|.++. ++..+..+++|+.|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            467888888888887  7777777888888888888888877 444 78888899999988887 666666688899999


Q ss_pred             cCCCccccccCchhhhcCCCccEEeCCCCCCccCCh----hccccCcccEEeccC
Q psy3781         104 LNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY----ELGLAQQLHHLNLVG  154 (183)
Q Consensus       104 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~----~~~~~~~L~~l~l~~  154 (183)
                      +++|.+++...+..++.+++|+++++++|.+++++.    .+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999998886324778888999999999999888776    578888999888763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.77  E-value=3.3e-18  Score=134.16  Aligned_cols=157  Identities=27%  Similarity=0.322  Sum_probs=131.7

Q ss_pred             CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781           5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL   81 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l   81 (183)
                      +...+.++++++.++.+|..+.  ++++.|++++|.++.+++ .|..+++|++|++++|.++.+++..  .+++|++|++
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            3445789999999999998774  799999999999998874 6889999999999999999886654  8899999999


Q ss_pred             CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcc--cEEeccCCcC--
Q psy3781          82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQL--HHLNLVGNCF--  157 (183)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L--~~l~l~~n~~--  157 (183)
                      ++|.++.+|..  .+++|+.|++++|.++++..+..++.+++|++|++++|.++..  .+..++++  +.+++++|.+  
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCC
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccc
Confidence            99999988776  7899999999999999875457899999999999999998863  34555666  9999999988  


Q ss_pred             CCCcHHHhhh
Q psy3781         158 KYPRQDILQK  167 (183)
Q Consensus       158 ~~~~~~~~~~  167 (183)
                      .+..+..+..
T Consensus       184 ~~~~~~~l~~  193 (562)
T 3a79_B          184 KGGETESLQI  193 (562)
T ss_dssp             CSSSCCEEEE
T ss_pred             cccCcccccc
Confidence            6665555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.77  E-value=1.5e-17  Score=127.38  Aligned_cols=101  Identities=23%  Similarity=0.294  Sum_probs=56.5

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLS   82 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~   82 (183)
                      ++++|+.|++++|.+..+| .+..+++|+.|++++|.++.++  +..+++|++|++++|.++.++  + .+++|++|+++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD  114 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred             HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence            3556666666666666554 4555666666666666666553  455556666666666555543  3 45555555555


Q ss_pred             CCCCCCcchhccCCCCCcEEEcCCCcccc
Q psy3781          83 SNKFQQIPKCIFHLDNLEILILNNNDIEE  111 (183)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  111 (183)
                      +|.++.++  +..+++|+.|++++|.+++
T Consensus       115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A          115 TNKLTKLD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             SSCCSCCC--CTTCTTCCEEECTTSCCSC
T ss_pred             CCcCCeec--CCCCCcCCEEECCCCccce
Confidence            55555442  3344555555555554443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=6.7e-18  Score=117.57  Aligned_cols=129  Identities=20%  Similarity=0.366  Sum_probs=115.3

Q ss_pred             CCccEEecCCCcceeccc-c-cccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781           6 AQVEQADLSYNRLHVVNS-K-LFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN   80 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~-~-~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~   80 (183)
                      ..++.|++++|.+..+++ . +..+++|+.|++++|.++.+++ .|..+++|++|++++|.++.++...  .+++|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            357899999999998743 3 5589999999999999998776 5888999999999999999988864  889999999


Q ss_pred             CCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781          81 LSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        81 l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      +++|+++.+ +..+..+++|+.|++++|.++++. +..+..+++|+.+++++|.++
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCc
Confidence            999999988 456778999999999999999987 788999999999999999987

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=1.7e-18  Score=133.65  Aligned_cols=157  Identities=23%  Similarity=0.244  Sum_probs=120.4

Q ss_pred             CCCCccEEecCCCcceeccc-ccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCc------------
Q psy3781           4 KEAQVEQADLSYNRLHVVNS-KLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID------------   70 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~-~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~------------   70 (183)
                      .+++|+.|++++|.+..+++ .+..+++|+.|++++|.++..++ +..+++|++|++++|.++.++..            
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            34578888888888887654 45578888888888888875554 67777888888888777654421            


Q ss_pred             ------cccCCCCeEeCCCCCCCCcc-hhccCCCCCcEEEcCCCccccccCchhhh-cCCCccEEeCCCCCCccCChhcc
Q psy3781          71 ------FNFGHLRELNLSSNKFQQIP-KCIFHLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNNNIRKIPYELG  142 (183)
Q Consensus        71 ------~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-~~~~L~~l~l~~n~l~~~~~~~~  142 (183)
                            ..+++|++|++++|.++.++ ..+..+++|+.|++++|.+++.. +..+. .++.|+.|++++|.++.++. ..
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~  188 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDVKG-QV  188 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEEEC-CC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-hHHHhhhCCcccEEecCCCccccccc-cc
Confidence                  03567788888888888764 35667888999999999998875 55554 68899999999999887754 34


Q ss_pred             ccCcccEEeccCCcCCCCcHH
Q psy3781         143 LAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus       143 ~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      .+++|+.|++++|.+++.++.
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~~  209 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGPE  209 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECGG
T ss_pred             cCCCCCEEECCCCCCCCCCHh
Confidence            688999999999999988776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=1.3e-17  Score=130.55  Aligned_cols=139  Identities=24%  Similarity=0.317  Sum_probs=74.2

Q ss_pred             ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQ   87 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~   87 (183)
                      |+.|++++|.++.+|   ..+++|+.|++++|.++.+|. +..  +|++|++++|.++.++.  .+++|+.|++++|.++
T Consensus        82 L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A           82 ITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLT  153 (571)
T ss_dssp             CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred             CCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccC
Confidence            444444444444444   123444455555554444444 322  55555555555555444  3455566666666655


Q ss_pred             CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcc-------cEEeccCCcCCCC
Q psy3781          88 QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQL-------HHLNLVGNCFKYP  160 (183)
Q Consensus        88 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L-------~~l~l~~n~~~~~  160 (183)
                      .+|.   .+++|+.|++++|.+++++  . +.  ++|+.|++++|.++.+|. +..  +|       +.|++++|.++.+
T Consensus       154 ~lp~---~l~~L~~L~Ls~N~L~~lp--~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l  222 (571)
T 3cvr_A          154 MLPE---LPTSLEVLSVRNNQLTFLP--E-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHI  222 (571)
T ss_dssp             CCCC---CCTTCCEEECCSSCCSCCC--C-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCC
T ss_pred             cCCC---cCCCcCEEECCCCCCCCcc--h-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceec
Confidence            5544   3456666666666666652  3 33  667777777777766665 433  55       7777777777766


Q ss_pred             cHHHh
Q psy3781         161 RQDIL  165 (183)
Q Consensus       161 ~~~~~  165 (183)
                      +..++
T Consensus       223 p~~l~  227 (571)
T 3cvr_A          223 PENIL  227 (571)
T ss_dssp             CGGGG
T ss_pred             CHHHh
Confidence            65443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=1.1e-17  Score=114.18  Aligned_cols=125  Identities=28%  Similarity=0.445  Sum_probs=56.5

Q ss_pred             EEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCc--c-ccCCCCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCc
Q psy3781          33 ELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID--F-NFGHLRELNLSSNKFQQI-PKCIFHLDNLEILILNNND  108 (183)
Q Consensus        33 ~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~--~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~  108 (183)
                      .++++++.++.+|..+..  ++++|++++|.++.++..  + .+++|++|++++|.++.+ +..+..+++|+.|++++|.
T Consensus        12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            344444444444433321  444444444444444332  2 444444444444444443 2233444455555555555


Q ss_pred             cccccCchhhhcCCCccEEeCCCCCCccC-ChhccccCcccEEeccCCcCCCC
Q psy3781         109 IEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~L~~l~l~~n~~~~~  160 (183)
                      ++++. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|++.+.
T Consensus        90 l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           90 IKEIS-NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEEC-SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCccC-HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            54443 33344455555555555555433 33344455555555555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=3.7e-18  Score=116.89  Aligned_cols=133  Identities=17%  Similarity=0.198  Sum_probs=118.2

Q ss_pred             ccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCC-cchhccCCCCCcEEEc
Q psy3781          26 FDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ-IPKCIFHLDNLEILIL  104 (183)
Q Consensus        26 ~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l  104 (183)
                      .++++++.+++++|.++.++ .+..+++|++|++++|.+..++....+++|++|++++|.++. .+..+..+++|+.|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            35679999999999999888 688899999999999988877643388999999999999985 4667788999999999


Q ss_pred             CCCccccccCchhhhcCCCccEEeCCCCC-CccCChhccccCcccEEeccCCcCCCCc
Q psy3781         105 NNNDIEEINQPEKLVKMQKLTVLDLSNNN-IRKIPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       105 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      ++|.+++.. +..++.+++|+.|++++|. +++++ .+..+++|+.|++++|.+++.+
T Consensus       120 s~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          120 SHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             CSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred             cCCccCcHh-HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence            999999865 7888999999999999998 88887 6899999999999999998865

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=2.7e-18  Score=117.19  Aligned_cols=125  Identities=28%  Similarity=0.410  Sum_probs=111.8

Q ss_pred             ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc--ccCCCCCceEEcCCCccccccCc-c-ccCCCCeEeCCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD--LLNLRHLVYMNLENNKLETIDID-F-NFGHLRELNLSS   83 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~--~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~L~l~~   83 (183)
                      -+.++++++.++.+|..+..  +++.|++++|.++.++..  +..+++|++|++++|.++.+.+. + .+++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            47899999999999987754  999999999999988764  88899999999999999988654 4 889999999999


Q ss_pred             CCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781          84 NKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        84 ~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      |+++.++. .+..+++|+.|++++|.+++.. +..+..+++|+++++++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence            99998865 4667999999999999999986 788899999999999999988

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=2.4e-17  Score=130.31  Aligned_cols=86  Identities=22%  Similarity=0.313  Sum_probs=68.8

Q ss_pred             CCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEecc
Q psy3781          74 GHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLV  153 (183)
Q Consensus        74 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~  153 (183)
                      ++|++|++++|.++.+|   ..+++|+.|++++|.++.+.  .   .+++|+.|++++|.++.+|..+..+++|+.|+++
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp--~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLP--M---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCC--C---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCC--c---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence            55677777777777665   23467888888888888763  3   5688999999999999999999999999999999


Q ss_pred             CCcCCCCcHHHhhh
Q psy3781         154 GNCFKYPRQDILQK  167 (183)
Q Consensus       154 ~n~~~~~~~~~~~~  167 (183)
                      +|++.+..+..+.+
T Consensus       293 ~N~l~~~~~~~l~~  306 (622)
T 3g06_A          293 GNPLSERTLQALRE  306 (622)
T ss_dssp             SCCCCHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHh
Confidence            99999887776553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.76  E-value=4.7e-18  Score=114.40  Aligned_cols=134  Identities=22%  Similarity=0.253  Sum_probs=106.7

Q ss_pred             cccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhc-cCCCCCcEE
Q psy3781          25 LFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCI-FHLDNLEIL  102 (183)
Q Consensus        25 ~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l  102 (183)
                      +.++.+++.|++++|+++.++......++|++|++++|.++.+ ..+ .+++|++|++++|.++.+++.+ ..+++|+.|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            3457788899999998887754333344899999999998887 444 8888999999999998887654 678899999


Q ss_pred             EcCCCccccccCchhhhcCCCccEEeCCCCCCccCChh----ccccCcccEEeccCCcCCC
Q psy3781         103 ILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE----LGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus       103 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~L~~l~l~~n~~~~  159 (183)
                      ++++|.+.++.....+..+++|+.+++++|.++.+|..    +..+++|+.+++++|...+
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999998774123778889999999999999988875    7889999999999887544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.7e-17  Score=113.30  Aligned_cols=124  Identities=27%  Similarity=0.386  Sum_probs=85.2

Q ss_pred             cEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCC
Q psy3781           9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKF   86 (183)
Q Consensus         9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~   86 (183)
                      +.++++++.+..+|..+.  ++++.|++++|.++.+|..|..+++|++|++++|.++.++...  .+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            567777777777776553  4677777777777777766777777777777777777666543  667777777777777


Q ss_pred             CCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781          87 QQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        87 ~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      +.+++ .+..+++|+.|++++|.++.+. +..+..+++|+.+++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence            76644 4555677777777777777664 445666677777777777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.76  E-value=7.8e-18  Score=110.27  Aligned_cols=126  Identities=21%  Similarity=0.297  Sum_probs=110.8

Q ss_pred             CCCCccEEecCCCcce--ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCcccc-ccCcc-ccCCCCeE
Q psy3781           4 KEAQVEQADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET-IDIDF-NFGHLREL   79 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~-~~~~L~~L   79 (183)
                      ..++++.|++++|.+.  .++..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. ++..+ .+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3568999999999999  7888778899999999999999988 778889999999999999998 55545 69999999


Q ss_pred             eCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccCc---hhhhcCCCccEEeCCC
Q psy3781          80 NLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQP---EKLVKMQKLTVLDLSN  131 (183)
Q Consensus        80 ~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~~L~~l~l~~  131 (183)
                      ++++|.++.++  ..+..+++|+.|++++|.+++.. +   ..+..+++|+.+++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST-THHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH-HHHHHHHHHCCCcccccCCC
Confidence            99999999875  67788999999999999999885 3   4788899999998763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=2.9e-17  Score=112.17  Aligned_cols=127  Identities=23%  Similarity=0.378  Sum_probs=114.4

Q ss_pred             cEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCcc
Q psy3781          32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDI  109 (183)
Q Consensus        32 ~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~  109 (183)
                      +.++++++.++.+|..+.  +++++|++++|.++.++..+ .+++|++|++++|.++.++. .+..+++|+.|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            678999999999987663  68999999999999998766 89999999999999998865 577899999999999999


Q ss_pred             ccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCc
Q psy3781         110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       110 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      +.+. +..+..+++|+.|++++|.++.++.. +..+++|+.+++++|++...-
T Consensus        91 ~~i~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           91 RCIP-PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CBCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CEeC-HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            9987 67899999999999999999999875 788999999999999998754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.75  E-value=7.7e-18  Score=113.33  Aligned_cols=130  Identities=22%  Similarity=0.323  Sum_probs=114.2

Q ss_pred             CCCCCccEEecCCCcceecccccccC-CCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeE
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDI-TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLREL   79 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~-~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L   79 (183)
                      ..+.+++.|++++|.+..++. +..+ ++|+.|++++|.++.+ ..+..+++|++|++++|.++.+++..  .+++|++|
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            457889999999999998854 4544 4999999999999987 67888999999999999999988765  88999999


Q ss_pred             eCCCCCCCCcch--hccCCCCCcEEEcCCCccccccCch----hhhcCCCccEEeCCCCCCcc
Q psy3781          80 NLSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQPE----KLVKMQKLTVLDLSNNNIRK  136 (183)
Q Consensus        80 ~l~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~----~~~~~~~L~~l~l~~n~l~~  136 (183)
                      ++++|.++.++.  .+..+++|+.+++++|.+...  +.    .+..+++|+.+++++|...+
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~--~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK--KHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS--TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc--HhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999998876  677899999999999999877  44    48889999999999998764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=8.3e-17  Score=108.31  Aligned_cols=128  Identities=23%  Similarity=0.377  Sum_probs=77.2

Q ss_pred             cEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchh-ccCCCCCcEEEcCCCc
Q psy3781          32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKC-IFHLDNLEILILNNND  108 (183)
Q Consensus        32 ~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~  108 (183)
                      +.+++++++++.+|..+.  +++++|++++|.++.++...  .+++|++|++++|.++.++.. +..+++|+.|++++|.
T Consensus        10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            445555555555554332  45566666666655555433  455666666666666655443 3456667777777776


Q ss_pred             cccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCcH
Q psy3781         109 IEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      ++++. +..+..+++|++|++++|.++.++.. +..+++|+.+++++|++.+..+
T Consensus        88 l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLP-NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccC-HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            66654 44456666777777777777766654 4566677777777777766554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=6.9e-19  Score=137.94  Aligned_cols=157  Identities=22%  Similarity=0.306  Sum_probs=133.1

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCc-------------CC-CCCcc---------------------
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNL-------------IQ-NLPPD---------------------   47 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~-------------l~-~l~~~---------------------   47 (183)
                      ..++.++.|++++|.+..+|..+..+.+|+.|++++|.             .. ..|..                     
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45778899999999999999999888899988886653             11 11111                     


Q ss_pred             ---------ccC--CCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCc
Q psy3781          48 ---------LLN--LRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQP  115 (183)
Q Consensus        48 ---------~~~--~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  115 (183)
                               +..  ...|+.|++++|.++.+|. + .+++|+.|++++|.++.+|..+..+++|+.|++++|.++++  +
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l--p  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--D  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--G
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC--c
Confidence                     111  1258899999999999987 6 89999999999999999999999999999999999999986  5


Q ss_pred             hhhhcCCCccEEeCCCCCCccC--ChhccccCcccEEeccCCcCCCCcHH
Q psy3781         116 EKLVKMQKLTVLDLSNNNIRKI--PYELGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus       116 ~~~~~~~~L~~l~l~~n~l~~~--~~~~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                       .++.+++|+.|++++|.++.+  |..+..+++|+.|++++|++++.++.
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence             789999999999999999988  88899999999999999999888653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=3.4e-17  Score=133.88  Aligned_cols=131  Identities=25%  Similarity=0.303  Sum_probs=88.6

Q ss_pred             CCccEEecCCCcceec-ccccccCCCccEEEcCCCcC-CCC-CccccCCCCCceEEcCCCccccccCc-c-ccCCCCeEe
Q psy3781           6 AQVEQADLSYNRLHVV-NSKLFDITSIRELDLSHNLI-QNL-PPDLLNLRHLVYMNLENNKLETIDID-F-NFGHLRELN   80 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l-~~~~~~~~~l~~l~l~~~~l-~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~L~~L~   80 (183)
                      ++++.|++++|.+..+ +..+.++++|+.|++++|.. ..+ +..|..+++|++|++++|.+..+.+. + .+++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            4677777777777755 34455677777777777743 344 44567777777777777777766443 3 677777777


Q ss_pred             CCCCCCCC-cchh--ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCcc
Q psy3781          81 LSSNKFQQ-IPKC--IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK  136 (183)
Q Consensus        81 l~~~~~~~-~~~~--~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~  136 (183)
                      +++|.++. ++..  +..+++|+.|++++|.+.+...+..++.+++|++|++++|.++.
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            77777764 3332  55677777777777777766533567777777777777777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=4.8e-17  Score=132.99  Aligned_cols=165  Identities=21%  Similarity=0.301  Sum_probs=136.2

Q ss_pred             CCCCCCccEEecCCC-cceec-ccccccCCCccEEEcCCCcCCCC-CccccCCCCCceEEcCCCcccc-ccCc--c-ccC
Q psy3781           2 IAKEAQVEQADLSYN-RLHVV-NSKLFDITSIRELDLSHNLIQNL-PPDLLNLRHLVYMNLENNKLET-IDID--F-NFG   74 (183)
Q Consensus         2 l~~~~~l~~l~l~~~-~i~~l-~~~~~~~~~l~~l~l~~~~l~~l-~~~~~~~~~L~~L~l~~n~l~~-~~~~--~-~~~   74 (183)
                      |..+++|+.|++++| .+..+ +..+.++++|+.|++++|.++.+ |..|.++++|++|++++|.+.. ++..  + .++
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            678999999999999 44567 45566899999999999999966 6779999999999999999985 3333  4 889


Q ss_pred             CCCeEeCCCCCCCCcc--hhccCCCCCcEEEcCCCccccccCchhhhcC--CCccEEeCCCCCCcc-CChhccccCc---
Q psy3781          75 HLRELNLSSNKFQQIP--KCIFHLDNLEILILNNNDIEEINQPEKLVKM--QKLTVLDLSNNNIRK-IPYELGLAQQ---  146 (183)
Q Consensus        75 ~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~--~~L~~l~l~~n~l~~-~~~~~~~~~~---  146 (183)
                      +|++|++++|.++.++  ..+..+++|+.|++++|.+++.. +..++.+  ++|+.+++++|.++. .+..+..+++   
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence            9999999999998663  46788999999999999998876 6777766  899999999999884 4555555554   


Q ss_pred             ---ccEEeccCCcCCCCcHHHhhh
Q psy3781         147 ---LHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       147 ---L~~l~l~~n~~~~~~~~~~~~  167 (183)
                         |+.|++++|.+.+..+..+.+
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~~~  226 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNFSN  226 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred             cCceeEEecCCCcCchhHHHHHHh
Confidence               999999999888776655543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=1.6e-16  Score=121.63  Aligned_cols=78  Identities=23%  Similarity=0.378  Sum_probs=35.9

Q ss_pred             CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCcc
Q psy3781          30 SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI  109 (183)
Q Consensus        30 ~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~  109 (183)
                      +|++|++++|.++.+| .+..+++|++|++++|.++.++..  ..+|++|++++|.++.++ .+..+++|+.|++++|.+
T Consensus       132 ~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             CCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC
Confidence            4445555555544444 344455555555555554443322  124444444444444443 233444444444444444


Q ss_pred             cc
Q psy3781         110 EE  111 (183)
Q Consensus       110 ~~  111 (183)
                      ++
T Consensus       208 ~~  209 (454)
T 1jl5_A          208 KK  209 (454)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=1.3e-18  Score=139.93  Aligned_cols=143  Identities=21%  Similarity=0.265  Sum_probs=104.9

Q ss_pred             ceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCC
Q psy3781          18 LHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHL   96 (183)
Q Consensus        18 i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~   96 (183)
                      +...+..+..+..|+.|++++|.+..++..+..+++|++|++++|.++.++..+ .+++|++|++++|.++.+|..+..+
T Consensus       213 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l  292 (727)
T 4b8c_D          213 MVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC  292 (727)
T ss_dssp             ---------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred             eecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence            333344555788899999999999988888888899999999999999888777 8889999999999999888888888


Q ss_pred             CCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC-ChhccccC-cccEEeccCCcCCCCcH
Q psy3781          97 DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI-PYELGLAQ-QLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus        97 ~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~-~L~~l~l~~n~~~~~~~  162 (183)
                      ++|+.|++++|.++.+  +..++.+++|+.|++++|.++.. |..+.... ....+++++|.+.+..+
T Consensus       293 ~~L~~L~L~~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTL--PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             TTCSEEECCSSCCCCC--CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCCEEECCCCCCCcc--ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            9999999999999877  66688899999999999998843 33332221 11124445554444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.73  E-value=1.8e-16  Score=121.41  Aligned_cols=140  Identities=25%  Similarity=0.395  Sum_probs=90.9

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSN   84 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~   84 (183)
                      ++|++|++++|.+..+| .+.++++|+++++++|+++.+|..+   .+|++|++++|.++.++ .+ .+++|++|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence            47788888888887776 4667888888888888887766543   47777777777777766 34 6677777777777


Q ss_pred             CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCC
Q psy3781          85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~  159 (183)
                      .++.++...   ++|+.|++++|.++.+  + .++.+++|+++++++|.++.+|..   +++|+.|++++|.+.+
T Consensus       206 ~l~~l~~~~---~~L~~L~l~~n~l~~l--p-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          206 SLKKLPDLP---LSLESIVAGNNILEEL--P-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CCSSCCCCC---TTCCEEECCSSCCSSC--C-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC
T ss_pred             cCCcCCCCc---CcccEEECcCCcCCcc--c-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc
Confidence            766654422   3566666666666644  3 255666666666666666655532   2444555555554444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.73  E-value=4.3e-18  Score=126.81  Aligned_cols=159  Identities=25%  Similarity=0.359  Sum_probs=86.8

Q ss_pred             CccEEecCCCcceec-ccccccC-----CCccEEEcCCCcCCCCCcc-----ccCC-CCCceEEcCCCccccccCcc---
Q psy3781           7 QVEQADLSYNRLHVV-NSKLFDI-----TSIRELDLSHNLIQNLPPD-----LLNL-RHLVYMNLENNKLETIDIDF---   71 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l-~~~~~~~-----~~l~~l~l~~~~l~~l~~~-----~~~~-~~L~~L~l~~n~l~~~~~~~---   71 (183)
                      +|+.|++++|.++.. +..+..+     ++|++|++++|.++.....     +..+ ++|++|++++|.++..+...   
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            555555555555532 2222222     5556666666655533222     2333 56666666666665444322   


Q ss_pred             ---c-cCCCCeEeCCCCCCC-----CcchhccCCC-CCcEEEcCCCccccccCchhh----hcC-CCccEEeCCCCCCcc
Q psy3781          72 ---N-FGHLRELNLSSNKFQ-----QIPKCIFHLD-NLEILILNNNDIEEINQPEKL----VKM-QKLTVLDLSNNNIRK  136 (183)
Q Consensus        72 ---~-~~~L~~L~l~~~~~~-----~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~~----~~~-~~L~~l~l~~n~l~~  136 (183)
                         . ..+|++|++++|.++     .++..+...+ +|+.|++++|.+++.+ +..+    ... ++|+.|++++|.+++
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN-CAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh-HHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence               1 246666666666666     2223333333 6777777777776654 3322    233 477777777777765


Q ss_pred             -----CChhccc-cCcccEEeccCCcCCCCcHHHhh
Q psy3781         137 -----IPYELGL-AQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       137 -----~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                           ++..+.. .++|+.|++++|.+++.+.+.+.
T Consensus       211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  246 (362)
T 3goz_A          211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK  246 (362)
T ss_dssp             SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred             hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence                 4444444 34777777777777777664433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=3.3e-18  Score=128.38  Aligned_cols=159  Identities=23%  Similarity=0.209  Sum_probs=87.0

Q ss_pred             CCCCCCccEEecCCCcce----eccccc-------ccCCCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCccc
Q psy3781           2 IAKEAQVEQADLSYNRLH----VVNSKL-------FDITSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLE   65 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~----~l~~~~-------~~~~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~   65 (183)
                      |..+++|+.|++++|.+.    .+|..+       ..+++|+.|++++|.++.     ++..+..+++|++|++++|.++
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            445666666666665433    222222       355666777777766664     4445556666666666666665


Q ss_pred             cccCc-----c-cc---------CCCCeEeCCCCCCC--Ccc---hhccCCCCCcEEEcCCCcccccc---C-chhhhcC
Q psy3781          66 TIDID-----F-NF---------GHLRELNLSSNKFQ--QIP---KCIFHLDNLEILILNNNDIEEIN---Q-PEKLVKM  121 (183)
Q Consensus        66 ~~~~~-----~-~~---------~~L~~L~l~~~~~~--~~~---~~~~~~~~L~~l~l~~n~~~~~~---~-~~~~~~~  121 (183)
                      .....     + .+         ++|++|++++|+++  .++   ..+..+++|+.|++++|.+++.+   . +..+..+
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~  215 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  215 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence            32221     1 22         56666666666665  222   23344556666666666665321   0 1144555


Q ss_pred             CCccEEeCCCCCCc-----cCChhccccCcccEEeccCCcCCCC
Q psy3781         122 QKLTVLDLSNNNIR-----KIPYELGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus       122 ~~L~~l~l~~n~l~-----~~~~~~~~~~~L~~l~l~~n~~~~~  160 (183)
                      ++|+.|++++|.++     .+|..+..+++|+.|++++|.+++.
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence            66666666666662     3455555566666666666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=2.6e-18  Score=129.00  Aligned_cols=115  Identities=21%  Similarity=0.228  Sum_probs=67.3

Q ss_pred             ccCCCCCceEEcCCCcccc------ccCcc-ccCCCCeEeCCCCCCC-----CcchhccCCCCCcEEEcCCCccccccC-
Q psy3781          48 LLNLRHLVYMNLENNKLET------IDIDF-NFGHLRELNLSSNKFQ-----QIPKCIFHLDNLEILILNNNDIEEINQ-  114 (183)
Q Consensus        48 ~~~~~~L~~L~l~~n~l~~------~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~n~~~~~~~-  114 (183)
                      +..+++|++|++++|.++.      .+..+ .+++|++|++++|.++     .++..+..+++|+.|++++|.+++.+. 
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            3345556666666665551      12133 5566666666666663     344555556667777777766665420 


Q ss_pred             --chhhh--cCCCccEEeCCCCCCcc-----CChhc-cccCcccEEeccCCcCCCCcH
Q psy3781         115 --PEKLV--KMQKLTVLDLSNNNIRK-----IPYEL-GLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus       115 --~~~~~--~~~~L~~l~l~~n~l~~-----~~~~~-~~~~~L~~l~l~~n~~~~~~~  162 (183)
                        +..+.  .+++|+.|++++|.++.     +|..+ ..+++|+.|++++|++++..+
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence              22232  26677777777777765     56555 446777777777777776663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=1.9e-17  Score=121.94  Aligned_cols=152  Identities=22%  Similarity=0.292  Sum_probs=74.6

Q ss_pred             CCCCccEEecCCCccee--cccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCC-cccc--ccCcc-ccCCC
Q psy3781           4 KEAQVEQADLSYNRLHV--VNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENN-KLET--IDIDF-NFGHL   76 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~--l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n-~l~~--~~~~~-~~~~L   76 (183)
                      .+++|+.|++++|.+..  ++..+..+++|+.|++++|.++ ..+..+..+++|++|++++| .++.  ++..+ .+++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            34556666666665552  4444445566666666666555 33344445555666666555 3442  22223 45555


Q ss_pred             CeEeCCCC-CCCC--cchhccCCC-CCcEEEcCCC--ccccccCchhhhcCCCccEEeCCCCC-Cc-cCChhccccCccc
Q psy3781          77 RELNLSSN-KFQQ--IPKCIFHLD-NLEILILNNN--DIEEINQPEKLVKMQKLTVLDLSNNN-IR-KIPYELGLAQQLH  148 (183)
Q Consensus        77 ~~L~l~~~-~~~~--~~~~~~~~~-~L~~l~l~~n--~~~~~~~~~~~~~~~~L~~l~l~~n~-l~-~~~~~~~~~~~L~  148 (183)
                      ++|++++| .++.  ++..+..++ +|+.|++++|  .+++...+..+..+++|+.|++++|. ++ ..+..+..+++|+
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            55555555 5542  233344444 5555555555  23221113344445555555555554 33 2333344445555


Q ss_pred             EEeccCC
Q psy3781         149 HLNLVGN  155 (183)
Q Consensus       149 ~l~l~~n  155 (183)
                      .|++++|
T Consensus       251 ~L~l~~~  257 (336)
T 2ast_B          251 HLSLSRC  257 (336)
T ss_dssp             EEECTTC
T ss_pred             EeeCCCC
Confidence            5555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=6.2e-18  Score=124.51  Aligned_cols=163  Identities=20%  Similarity=0.198  Sum_probs=133.7

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCC--CCccccCCCCCceEEcCCCccccc-cCcc-ccCCCCeEeC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETI-DIDF-NFGHLRELNL   81 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~--l~~~~~~~~~L~~L~l~~n~l~~~-~~~~-~~~~L~~L~l   81 (183)
                      +.++.+++.++.+...++.++.+++|+.|++++|.++.  ++..+..+++|++|++++|.++.. +..+ .+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            67899999999999877778889999999999999873  677788899999999999988743 3333 7899999999


Q ss_pred             CCC-CCCC--cchhccCCCCCcEEEcCCC-ccccccCchhhhcCC-CccEEeCCCC--CCc--cCChhccccCcccEEec
Q psy3781          82 SSN-KFQQ--IPKCIFHLDNLEILILNNN-DIEEINQPEKLVKMQ-KLTVLDLSNN--NIR--KIPYELGLAQQLHHLNL  152 (183)
Q Consensus        82 ~~~-~~~~--~~~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~-~L~~l~l~~n--~l~--~~~~~~~~~~~L~~l~l  152 (183)
                      ++| .++.  ++..+..+++|+.|++++| .+++...+..+..++ +|++|++++|  .++  .++..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            999 6773  5566777899999999999 888753367788899 9999999999  454  56777788999999999


Q ss_pred             cCCc-CCCCcHHHhhhC
Q psy3781         153 VGNC-FKYPRQDILQKG  168 (183)
Q Consensus       153 ~~n~-~~~~~~~~~~~~  168 (183)
                      ++|. +++.....+.+.
T Consensus       230 ~~~~~l~~~~~~~l~~l  246 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQL  246 (336)
T ss_dssp             TTCTTCCGGGGGGGGGC
T ss_pred             CCCCcCCHHHHHHHhCC
Confidence            9998 666666555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=5.1e-16  Score=104.43  Aligned_cols=129  Identities=22%  Similarity=0.288  Sum_probs=112.3

Q ss_pred             CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781           7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS   83 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~   83 (183)
                      ..+.+++.++.+..+|..+.  ++++.|++++|+++.++.. +..+++|++|++++|.++.++...  .+++|++|++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            45789999999999887664  7999999999999988765 678999999999999999888765  889999999999


Q ss_pred             CCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCC
Q psy3781          84 NKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP  138 (183)
Q Consensus        84 ~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~  138 (183)
                      |.++.++.. +..+++|+.|++++|.++.+. +..+..+++|+.+++++|.++...
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeC-HHHhcCCcccCEEEecCCCeeccC
Confidence            999988764 567899999999999999885 556788999999999999988543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.69  E-value=6.6e-16  Score=122.13  Aligned_cols=95  Identities=19%  Similarity=0.251  Sum_probs=48.3

Q ss_pred             CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCC
Q psy3781           7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKF   86 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~   86 (183)
                      +|+.|++++|.++.+|.   .+++|+.|++++|+++.+|.   .+++|++|++++|.++.++.  .+.+|+.|++++|++
T Consensus        62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l  133 (622)
T 3g06_A           62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQL  133 (622)
T ss_dssp             TCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCC
T ss_pred             CCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCC
Confidence            44445555554444444   23445555555555554444   33455555555555554443  334555555555555


Q ss_pred             CCcchhccCCCCCcEEEcCCCccccc
Q psy3781          87 QQIPKCIFHLDNLEILILNNNDIEEI  112 (183)
Q Consensus        87 ~~~~~~~~~~~~L~~l~l~~n~~~~~  112 (183)
                      +.+|..   +++|+.|++++|.++++
T Consensus       134 ~~lp~~---l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          134 TSLPVL---PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             SCCCCC---CTTCCEEECCSSCCSCC
T ss_pred             CcCCCC---CCCCCEEECcCCcCCCc
Confidence            555442   25566666666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.69  E-value=3.5e-19  Score=122.10  Aligned_cols=150  Identities=24%  Similarity=0.284  Sum_probs=120.5

Q ss_pred             ccEEecCCC--cceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCC
Q psy3781           8 VEQADLSYN--RLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSN   84 (183)
Q Consensus         8 l~~l~l~~~--~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~   84 (183)
                      ++...+.+.  .+..++..+..+++|+.|++++|.++.+| .+..+++|++|++++|.++.++... .+++|++|++++|
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence            344444433  34455557778999999999999999988 8888999999999999999888766 6789999999999


Q ss_pred             CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-----------hccccCcccEEecc
Q psy3781          85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-----------ELGLAQQLHHLNLV  153 (183)
Q Consensus        85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-----------~~~~~~~L~~l~l~  153 (183)
                      .++.++ .+..+++|+.|++++|.++++.....+..+++|+++++++|.+++.+.           .+..+++|+.|+  
T Consensus       104 ~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--  180 (198)
T 1ds9_A          104 QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--  180 (198)
T ss_dssp             ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--
T ss_pred             cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--
Confidence            999886 567788999999999999987412578889999999999999875422           267889999886  


Q ss_pred             CCcCCCCc
Q psy3781         154 GNCFKYPR  161 (183)
Q Consensus       154 ~n~~~~~~  161 (183)
                      +++++...
T Consensus       181 ~~~i~~~e  188 (198)
T 1ds9_A          181 GMPVDVDE  188 (198)
T ss_dssp             CGGGTTTT
T ss_pred             CcccCHHH
Confidence            77776543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.68  E-value=1.5e-16  Score=117.96  Aligned_cols=160  Identities=21%  Similarity=0.239  Sum_probs=105.9

Q ss_pred             CCccEEecCCCcceeccccc-ccCCCccEEEcCCCcCC-CCCcc-ccCCCCCce-EEcCCCccccccCcc--ccCCCCeE
Q psy3781           6 AQVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQ-NLPPD-LLNLRHLVY-MNLENNKLETIDIDF--NFGHLREL   79 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~-~l~~~-~~~~~~L~~-L~l~~n~l~~~~~~~--~~~~L~~L   79 (183)
                      +++++|++++|.|+.+++.. .++++|+.|++++|++. .++.. |.+++++.. +...+|.+..+++..  .+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            36788888888888887764 46788888888888764 34432 455555443 444556666665443  55666666


Q ss_pred             eCCCCCCCCc-------------------------chh-ccC-CCCCcEEEcCCCccccccCchhhhcCCCccEEeCCC-
Q psy3781          80 NLSSNKFQQI-------------------------PKC-IFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN-  131 (183)
Q Consensus        80 ~l~~~~~~~~-------------------------~~~-~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~-  131 (183)
                      ++++|+++.+                         +.. +.. ...++.|++++|.++.+  +.......+++.+++.+ 
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i--~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI--HNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE--CTTSSTTEEEEEEECTTC
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC--ChhhccccchhHHhhccC
Confidence            6666655432                         221 111 23466778888888877  34444556788888874 


Q ss_pred             CCCccCChh-ccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         132 NNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       132 n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      |.++.+|.. +..+++|+.|++++|.++..+...+.+
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~  224 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  224 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence            678888764 688889999999999998888766554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.68  E-value=6.6e-18  Score=129.24  Aligned_cols=162  Identities=22%  Similarity=0.205  Sum_probs=111.6

Q ss_pred             CCCCccEEecCCCcceec-----ccccc-cCCCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCccccccCcc-
Q psy3781           4 KEAQVEQADLSYNRLHVV-----NSKLF-DITSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETIDIDF-   71 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l-----~~~~~-~~~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~~~~~~~-   71 (183)
                      .+++|+.|++++|.+...     .+.+. .+++|+.|++++|.++.     ++..+..+++|++|++++|.++..+... 
T Consensus       225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            356666666666665521     22222 35677777777777664     4555666777777887777766432211 


Q ss_pred             ------ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccCchhhhc-----CCCccEEeCCCCCCc
Q psy3781          72 ------NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQPEKLVK-----MQKLTVLDLSNNNIR  135 (183)
Q Consensus        72 ------~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-----~~~L~~l~l~~n~l~  135 (183)
                            ..++|++|++++|.++.     ++..+..+++|+.|++++|.+++.+ +..+..     .+.|+.|++++|.++
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG-VRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc-HHHHHHHHcCCCCceEEEECCCCCCC
Confidence                  22578888888887773     3445556788999999999888765 343432     578999999999988


Q ss_pred             -----cCChhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781         136 -----KIPYELGLAQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       136 -----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                           .++..+..+++|++|++++|++++.+...+.
T Consensus       384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~  419 (461)
T 1z7x_W          384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV  419 (461)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred             hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHH
Confidence                 5677788899999999999998877655544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=1.2e-15  Score=119.58  Aligned_cols=121  Identities=21%  Similarity=0.303  Sum_probs=105.5

Q ss_pred             CccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCc
Q psy3781          30 SIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNND  108 (183)
Q Consensus        30 ~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~  108 (183)
                      .|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+ .+++|+.|++++|.++.+| .+..+++|+.|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            58899999999999887 888999999999999999998877 8999999999999999987 78889999999999999


Q ss_pred             cccccCchhhhcCCCccEEeCCCCCCccCChh----ccccCcccEEec
Q psy3781         109 IEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE----LGLAQQLHHLNL  152 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~----~~~~~~L~~l~l  152 (183)
                      +++...+..++.+++|+.|++++|.++.+|..    +..+++|+.|++
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            98874357888999999999999999977654    344788888864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=1.5e-15  Score=111.72  Aligned_cols=94  Identities=17%  Similarity=0.252  Sum_probs=78.7

Q ss_pred             cCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCcc-EEeCCCCCCccCC-hhccccCcccE
Q psy3781          73 FGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLT-VLDLSNNNIRKIP-YELGLAQQLHH  149 (183)
Q Consensus        73 ~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~-~l~l~~n~l~~~~-~~~~~~~~L~~  149 (183)
                      +++|+++++.+|+++.++. .+..+.+|+.+++.+| +..++ ...|.++++|+ .+.+.+ .++.++ .++.+|++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceeh-HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            5688899999988988876 4556889999999887 77777 78889999999 999988 777776 45889999999


Q ss_pred             EeccCCcCCCCcHHHhhhCh
Q psy3781         150 LNLVGNCFKYPRQDILQKGT  169 (183)
Q Consensus       150 l~l~~n~~~~~~~~~~~~~~  169 (183)
                      +++.+|.++.++...|.+..
T Consensus       302 l~l~~n~i~~I~~~aF~~~~  321 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGV  321 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTC
T ss_pred             EEeCCCccCccchhhhcCCc
Confidence            99999999999988887653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.63  E-value=7.6e-16  Score=114.68  Aligned_cols=164  Identities=21%  Similarity=0.232  Sum_probs=123.7

Q ss_pred             CCCCccEEecCCCcceecc-----cccccCC-CccEEEcCCCcCCCCC-ccccCC-----CCCceEEcCCCccccccCc-
Q psy3781           4 KEAQVEQADLSYNRLHVVN-----SKLFDIT-SIRELDLSHNLIQNLP-PDLLNL-----RHLVYMNLENNKLETIDID-   70 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~-----~~~~~~~-~l~~l~l~~~~l~~l~-~~~~~~-----~~L~~L~l~~n~l~~~~~~-   70 (183)
                      ..++|+.|++++|.++..+     ..+..++ +|++|++++|.++... ..+..+     ++|++|++++|.++..+.. 
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            3456999999999999765     3455677 8999999999998553 334432     8999999999999866554 


Q ss_pred             ----c-cc-CCCCeEeCCCCCCCCcch-h----ccC-CCCCcEEEcCCCccccccC---chhhhcCC-CccEEeCCCCCC
Q psy3781          71 ----F-NF-GHLRELNLSSNKFQQIPK-C----IFH-LDNLEILILNNNDIEEINQ---PEKLVKMQ-KLTVLDLSNNNI  134 (183)
Q Consensus        71 ----~-~~-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~l~l~~n~~~~~~~---~~~~~~~~-~L~~l~l~~n~l  134 (183)
                          + .. ++|++|++++|.++..+. .    +.. ..+|+.|++++|.+++.+.   +..+...+ +|++|++++|.+
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence                2 33 799999999999985533 2    223 3689999999999986541   22334454 999999999999


Q ss_pred             ccCCh-----hcccc-CcccEEeccCCcCCCCcHHHhhh
Q psy3781         135 RKIPY-----ELGLA-QQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       135 ~~~~~-----~~~~~-~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      ++...     .+..+ ++|+.|++++|.+++.+...+..
T Consensus       180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence            86553     34555 59999999999999877665444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=1.6e-15  Score=112.49  Aligned_cols=157  Identities=20%  Similarity=0.227  Sum_probs=116.7

Q ss_pred             ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccc-cccCcc--ccCCCCe-EeCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLE-TIDIDF--NFGHLRE-LNLS   82 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~-~~~~~~--~~~~L~~-L~l~   82 (183)
                      -++++++++.++++|..+  .+++++|++++|+++.++.. |.++++|++|++++|.+. .++...  .++++++ +.+.
T Consensus        11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            367899999999999877  36899999999999999875 788999999999999975 466654  7777765 5667


Q ss_pred             CCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcC--------------------------CCccEEeCCCCCCc
Q psy3781          83 SNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKM--------------------------QKLTVLDLSNNNIR  135 (183)
Q Consensus        83 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~--------------------------~~L~~l~l~~n~l~  135 (183)
                      .|+++.+++ .+..+++|+.+++++|.+.... +..+...                          ..++.|++++|.++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            789998855 5667999999999999887653 2222111                          24566777777777


Q ss_pred             cCChhccccCcccEEeccC-CcCCCCcHHHhhh
Q psy3781         136 KIPYELGLAQQLHHLNLVG-NCFKYPRQDILQK  167 (183)
Q Consensus       136 ~~~~~~~~~~~L~~l~l~~-n~~~~~~~~~~~~  167 (183)
                      +++.......+++.+++.+ |.++.++.++|..
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~  200 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG  200 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence            7766655556677777753 5666666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=6.4e-17  Score=123.77  Aligned_cols=134  Identities=16%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             CCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCcccccc-----Ccc--ccCCCCeEeCCCCCCCC-----cch
Q psy3781          29 TSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETID-----IDF--NFGHLRELNLSSNKFQQ-----IPK   91 (183)
Q Consensus        29 ~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~~~~-----~~~--~~~~L~~L~l~~~~~~~-----~~~   91 (183)
                      ++|+.|++++|.++.     ++..+..+++|++|++++|.++...     ...  .+++|++|++++|.++.     ++.
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            355555555555543     2333444556666666666554321     111  24556666666666553     344


Q ss_pred             hccCCCCCcEEEcCCCccccccCchhhhc-----CCCccEEeCCCCCCcc-----CChhccccCcccEEeccCCcCCCCc
Q psy3781          92 CIFHLDNLEILILNNNDIEEINQPEKLVK-----MQKLTVLDLSNNNIRK-----IPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        92 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~-----~~~L~~l~l~~n~l~~-----~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      .+..+++|+.|++++|.+++.+ +..+..     .++|+.|++++|.+++     ++..+..+++|+.|++++|.+.+.+
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  357 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEG-ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG  357 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred             HHhhCCCcceEECCCCCCchHH-HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence            4444566666666666655432 222221     1355555555555542     2333445555666666665555444


Q ss_pred             HH
Q psy3781         162 QD  163 (183)
Q Consensus       162 ~~  163 (183)
                      ..
T Consensus       358 ~~  359 (461)
T 1z7x_W          358 VR  359 (461)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=1.6e-14  Score=96.55  Aligned_cols=103  Identities=21%  Similarity=0.302  Sum_probs=65.0

Q ss_pred             ccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchh-ccCCCCCcEEEcCCC
Q psy3781          31 IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKC-IFHLDNLEILILNNN  107 (183)
Q Consensus        31 l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n  107 (183)
                      .+.++++++.++.+|..+.  +++++|++++|.++.+++..  .+++|++|++++|+++.++.. +..+++|+.|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4567777777777766552  56777777777776664433  566666666666666666553 345666666666666


Q ss_pred             ccccccCchhhhcCCCccEEeCCCCCCcc
Q psy3781         108 DIEEINQPEKLVKMQKLTVLDLSNNNIRK  136 (183)
Q Consensus       108 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~  136 (183)
                      .++.+. +..+..+++|+.|++++|.++.
T Consensus        89 ~l~~~~-~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKSIP-RGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCC-TTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCEeC-HHHhcCCCCCCEEEeCCCCCCC
Confidence            666654 3446666666666666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=1.9e-14  Score=96.55  Aligned_cols=105  Identities=22%  Similarity=0.276  Sum_probs=73.5

Q ss_pred             cEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcchh-ccCCCCCcEEEcCCCc
Q psy3781          32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPKC-IFHLDNLEILILNNND  108 (183)
Q Consensus        32 ~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~  108 (183)
                      +.++++++.++.+|..+.  +++++|++++|.++.+++..  .+++|++|++++|+++.++.. +..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            567788888877777653  67778888888777775543  677777777777777777654 3457777777777777


Q ss_pred             cccccCchhhhcCCCccEEeCCCCCCccCCh
Q psy3781         109 IEEINQPEKLVKMQKLTVLDLSNNNIRKIPY  139 (183)
Q Consensus       109 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~  139 (183)
                      ++.+. +..+..+++|+.|++++|.+...+.
T Consensus        93 l~~l~-~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           93 LKSIP-RGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCC-TTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             cceeC-HHHhccccCCCEEEeCCCCcccccc
Confidence            77664 4446667777777777777765443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=3.3e-14  Score=95.03  Aligned_cols=104  Identities=26%  Similarity=0.316  Sum_probs=92.7

Q ss_pred             CccEEecCCCcceecccccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781           7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS   83 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~   83 (183)
                      ..+.++++++.+..+|..+.  ++++.|++++|.++.++ ..|..+++|++|++++|.++.++...  .+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            46889999999999998774  89999999999999884 45888999999999999999998875  889999999999


Q ss_pred             CCCCCcchh-ccCCCCCcEEEcCCCccccc
Q psy3781          84 NKFQQIPKC-IFHLDNLEILILNNNDIEEI  112 (183)
Q Consensus        84 ~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~  112 (183)
                      |+++.++.. +..+++|+.|++++|.+...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            999998774 66799999999999998754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=4.9e-14  Score=94.55  Aligned_cols=102  Identities=25%  Similarity=0.302  Sum_probs=70.4

Q ss_pred             cEEecCCCcceecccccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCC
Q psy3781           9 EQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNK   85 (183)
Q Consensus         9 ~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~   85 (183)
                      +.++++++.+..+|..+.  ++++.|++++|+++.++ ..|..+++|++|++++|.++.++...  .+++|++|++++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            567777777777776653  67777777777777653 34666777777777777777776654  66777777777777


Q ss_pred             CCCcchh-ccCCCCCcEEEcCCCccccc
Q psy3781          86 FQQIPKC-IFHLDNLEILILNNNDIEEI  112 (183)
Q Consensus        86 ~~~~~~~-~~~~~~L~~l~l~~n~~~~~  112 (183)
                      ++.++.. +..+++|+.|++++|.+...
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcccc
Confidence            7776654 55577777777777776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=5.1e-17  Score=111.32  Aligned_cols=130  Identities=22%  Similarity=0.285  Sum_probs=111.7

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEe
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELN   80 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~   80 (183)
                      +..+++|+.|++++|.+..++ .+..+++|+.|++++|.++.+|..+..+++|++|++++|.++.++ .+ .+++|++|+
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred             HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence            356789999999999999988 777899999999999999999887777899999999999999887 45 889999999


Q ss_pred             CCCCCCCCcch--hccCCCCCcEEEcCCCccccccCc----------hhhhcCCCccEEeCCCCCCcc
Q psy3781          81 LSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQP----------EKLVKMQKLTVLDLSNNNIRK  136 (183)
Q Consensus        81 l~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~----------~~~~~~~~L~~l~l~~n~l~~  136 (183)
                      +++|.++.++.  .+..+++|+.+++++|.+.+.. +          ..+..+++|+.++  ++.++.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY-KENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH-HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc-ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999998754  6778999999999999997652 2          2377899999987  666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.55  E-value=7.4e-16  Score=115.11  Aligned_cols=164  Identities=16%  Similarity=0.140  Sum_probs=122.4

Q ss_pred             CCCccEEecCCCcceec-----ccccc-cCCCccEEEcCCCcCCC--CCccccCCCCCceEEcCCCccccccCcc-----
Q psy3781           5 EAQVEQADLSYNRLHVV-----NSKLF-DITSIRELDLSHNLIQN--LPPDLLNLRHLVYMNLENNKLETIDIDF-----   71 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l-----~~~~~-~~~~l~~l~l~~~~l~~--l~~~~~~~~~L~~L~l~~n~l~~~~~~~-----   71 (183)
                      ++.++.|++++|.++..     ...+. ...+|+.|++++|.++.  +......+.+|+.|++++|.+++.+...     
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35789999999998832     22222 23699999999999873  2222334568999999999987543322     


Q ss_pred             --ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCcc-----
Q psy3781          72 --NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIRK-----  136 (183)
Q Consensus        72 --~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~~-----  136 (183)
                        ..++|++|++++|.++.     ++..+...++|+.|++++|.+++.+.   ...+...+.|+.|++++|.+++     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence              35789999999999873     44455678899999999999987541   2345567899999999999983     


Q ss_pred             CChhccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781         137 IPYELGLAQQLHHLNLVGNCFKYPRQDILQKG  168 (183)
Q Consensus       137 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  168 (183)
                      ++..+..+++|+.|++++|.++..+...+...
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence            34456678899999999999998888777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=8.2e-14  Score=102.41  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=87.6

Q ss_pred             CCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCc-EEEcCCCccccccCchhhhcCCCccE
Q psy3781          51 LRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLE-ILILNNNDIEEINQPEKLVKMQKLTV  126 (183)
Q Consensus        51 ~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~~L~~  126 (183)
                      +++|+.+++++|.++.++...  .+.+|+++++..| +..++. .+..+.+|+ .+++.+ .++.++ ...|.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccCCE
Confidence            678999999999999999887  8889999999997 888866 566788999 999988 888887 789999999999


Q ss_pred             EeCCCCCCccCCh-hccccCcccEEec
Q psy3781         127 LDLSNNNIRKIPY-ELGLAQQLHHLNL  152 (183)
Q Consensus       127 l~l~~n~l~~~~~-~~~~~~~L~~l~l  152 (183)
                      +++.+|.++.++. .+.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999998876 4899999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=2.8e-12  Score=96.64  Aligned_cols=161  Identities=17%  Similarity=0.246  Sum_probs=93.0

Q ss_pred             CCCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCc---------
Q psy3781           1 MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDID---------   70 (183)
Q Consensus         1 ~l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~---------   70 (183)
                      +|..|.+|+.+++.++.+..++...+.+.+|+.+.+..+ ++.++.. |.++++|+.+++..+ ++.++..         
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~  252 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITT  252 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSE
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccE
Confidence            466778888888888777777777776677777777643 5555443 455666666666543 3333332         


Q ss_pred             -------------c--ccCCCCeEeCCCCCCC-----Ccch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeC
Q psy3781          71 -------------F--NFGHLRELNLSSNKFQ-----QIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL  129 (183)
Q Consensus        71 -------------~--~~~~L~~L~l~~~~~~-----~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l  129 (183)
                                   +  .+.+|+.+.+.++.+.     .++. .+..+++|+.+++. +.++.++ ...|.++++|+.+.+
T Consensus       253 i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~-~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          253 VKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG-QGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC-TTTTTTCCSCCEEEE
T ss_pred             EEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh-hhhhcCCCCccEEEE
Confidence                         2  4445555555444333     2322 33345555555555 3355554 555666666666666


Q ss_pred             CCCCCccCCh-hccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         130 SNNNIRKIPY-ELGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       130 ~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      ..+ ++.+.. ++.++ +|+.+++.+|.+.......|..
T Consensus       331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence            443 554443 35666 7777777777665555554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=4.4e-12  Score=93.71  Aligned_cols=100  Identities=21%  Similarity=0.329  Sum_probs=63.0

Q ss_pred             EEEcCCC-cCCCCCccccCCCCCceEEcCC-CccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCC
Q psy3781          33 ELDLSHN-LIQNLPPDLLNLRHLVYMNLEN-NKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNN  107 (183)
Q Consensus        33 ~l~l~~~-~l~~l~~~~~~~~~L~~L~l~~-n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n  107 (183)
                      .++.+++ +++.+|. +..+++|+.|++++ |.++.+++..  .+.+|++|++++|+++.+++ .+..+++|+.|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            3566666 6777777 66677777777774 7777666443  66667777777776666544 4455666666677666


Q ss_pred             ccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781         108 DIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus       108 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      .++.+. +..+..++ |+.|++.+|.+.
T Consensus        91 ~l~~~~-~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLS-WKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCC-STTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeC-HHHcccCC-ceEEEeeCCCcc
Confidence            666653 33333333 666666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=3.2e-12  Score=94.45  Aligned_cols=102  Identities=22%  Similarity=0.224  Sum_probs=88.5

Q ss_pred             cEEecCCC-cceecccccccCCCccEEEcCC-CcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781           9 EQADLSYN-RLHVVNSKLFDITSIRELDLSH-NLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS   83 (183)
Q Consensus         9 ~~l~l~~~-~i~~l~~~~~~~~~l~~l~l~~-~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~   83 (183)
                      ..++++++ .+..+|. +..+.+|+.|+|++ |.++.+++ .|..+++|+.|++++|.++.+++..  .+++|++|++++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            45789888 8999999 88899999999996 99998875 5888999999999999999888765  899999999999


Q ss_pred             CCCCCcchhccCCCCCcEEEcCCCcccc
Q psy3781          84 NKFQQIPKCIFHLDNLEILILNNNDIEE  111 (183)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~  111 (183)
                      |+++.++...+....|+.|++.+|.+.-
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccC
Confidence            9999998766554459999999998863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.34  E-value=3.2e-13  Score=106.26  Aligned_cols=142  Identities=15%  Similarity=0.132  Sum_probs=96.4

Q ss_pred             cCCCccEEEcCCCcCCC-CCcccc-CCCCCceEEcC----CCccccccCc------c-ccCCCCeEeCCCCC--CCC-cc
Q psy3781          27 DITSIRELDLSHNLIQN-LPPDLL-NLRHLVYMNLE----NNKLETIDID------F-NFGHLRELNLSSNK--FQQ-IP   90 (183)
Q Consensus        27 ~~~~l~~l~l~~~~l~~-l~~~~~-~~~~L~~L~l~----~n~l~~~~~~------~-~~~~L~~L~l~~~~--~~~-~~   90 (183)
                      .+++|+.|+++.+.++. ....+. .+++|+.|+++    .+.++..+..      + .+++|++|++++|.  ++. ..
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            46667777665555552 122233 36778888875    4555543221      2 57788888886543  442 22


Q ss_pred             hhcc-CCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCcc--CChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781          91 KCIF-HLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK--IPYELGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus        91 ~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      ..+. .+++|+.|++++|.+++.+.+..+..+++|+.|++++|.+++  ++..+..+++|+.|++++|.++..+.+.+.+
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~  535 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM  535 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH
Confidence            2232 478899999999998875534556788999999999999873  4444677899999999999998887766654


Q ss_pred             C
Q psy3781         168 G  168 (183)
Q Consensus       168 ~  168 (183)
                      .
T Consensus       536 ~  536 (592)
T 3ogk_B          536 A  536 (592)
T ss_dssp             C
T ss_pred             h
Confidence            4

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.28  E-value=4.7e-11  Score=90.02  Aligned_cols=76  Identities=18%  Similarity=0.289  Sum_probs=46.7

Q ss_pred             CccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCC
Q psy3781           7 QVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSS   83 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~   83 (183)
                      +|+.+.+.+ .+..+....+ ++.+|+.+++.+++++.++.......+|+.+.+.. .++.++..+  .+.+|+.+++..
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence            355555553 4455554444 56677777777777776666544456677777763 366666655  666777777765


Q ss_pred             C
Q psy3781          84 N   84 (183)
Q Consensus        84 ~   84 (183)
                      +
T Consensus       236 ~  236 (401)
T 4fdw_A          236 N  236 (401)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=2.3e-12  Score=96.30  Aligned_cols=140  Identities=21%  Similarity=0.234  Sum_probs=105.1

Q ss_pred             CCCccEEEcCCCcCCCC-----CccccC-CCCCceEEcCCCccccccCc--c-ccCCCCeEeCCCCCCCCc-----chhc
Q psy3781          28 ITSIRELDLSHNLIQNL-----PPDLLN-LRHLVYMNLENNKLETIDID--F-NFGHLRELNLSSNKFQQI-----PKCI   93 (183)
Q Consensus        28 ~~~l~~l~l~~~~l~~l-----~~~~~~-~~~L~~L~l~~n~l~~~~~~--~-~~~~L~~L~l~~~~~~~~-----~~~~   93 (183)
                      .+.++.+++++|.++..     ...+.. .++|++|++++|.++.....  . .+.+|++|++++|.++..     ...+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46799999999998832     222332 36899999999998753322  2 567899999999999843     2222


Q ss_pred             -cCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCcc-----CChhccccCcccEEeccCCcCCCCcHHH
Q psy3781          94 -FHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIRK-----IPYELGLAQQLHHLNLVGNCFKYPRQDI  164 (183)
Q Consensus        94 -~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~~~  164 (183)
                       ...++|+.|++++|.+++.+.   ...+...++|++|++++|.+++     ++..+..+++|+.|++++|.++..+...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             246789999999999987541   2334668899999999999983     3455778889999999999998877665


Q ss_pred             hhh
Q psy3781         165 LQK  167 (183)
Q Consensus       165 ~~~  167 (183)
                      +..
T Consensus       231 l~~  233 (372)
T 3un9_A          231 LAR  233 (372)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.23  E-value=4.8e-12  Score=99.57  Aligned_cols=57  Identities=9%  Similarity=-0.000  Sum_probs=36.1

Q ss_pred             CCCCccEEecCCCcce-----ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcC
Q psy3781           4 KEAQVEQADLSYNRLH-----VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLE   60 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~-----~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~   60 (183)
                      .+++|+.|+++++.++     .++..+..+++|+.|++++|.+..++..+..+++|++|+++
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence            4677788888777765     23333446777788887777766555555555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.15  E-value=1.7e-11  Score=91.11  Aligned_cols=162  Identities=14%  Similarity=0.132  Sum_probs=109.5

Q ss_pred             CCCCCccEEecCCCcce----------ecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccC--c
Q psy3781           3 AKEAQVEQADLSYNRLH----------VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDI--D   70 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~----------~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~   70 (183)
                      .++++|+.|.+.+....          .+...+..+++|+.|.++++.-..++. + ..++|++|++..+.+..-..  .
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            34678999988654321          233334467899999998873223443 3 37899999999888763221  1


Q ss_pred             c--ccCCCCeEeCCC--CC------CCCcchhc--cCCCCCcEEEcCCCccccccCchhhh---cCCCccEEeCCCCCCc
Q psy3781          71 F--NFGHLRELNLSS--NK------FQQIPKCI--FHLDNLEILILNNNDIEEINQPEKLV---KMQKLTVLDLSNNNIR  135 (183)
Q Consensus        71 ~--~~~~L~~L~l~~--~~------~~~~~~~~--~~~~~L~~l~l~~n~~~~~~~~~~~~---~~~~L~~l~l~~n~l~  135 (183)
                      .  .+++|++|+++.  +.      +..+...+  ..+++|+.|++.+|.+.+.. ...+.   .+++|++|+++.|.++
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCCCCC
Confidence            1  578999998753  11      21222222  24789999999999887643 33333   4678999999999988


Q ss_pred             c-----CChhccccCcccEEeccCCcCCCCcHHHhhh
Q psy3781         136 K-----IPYELGLAQQLHHLNLVGNCFKYPRQDILQK  167 (183)
Q Consensus       136 ~-----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  167 (183)
                      +     ++..+..+++|+.|++++|.++....+.+.+
T Consensus       293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            4     3444567899999999999988777666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.12  E-value=1.8e-11  Score=96.31  Aligned_cols=104  Identities=17%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             CCCCccEEecCCCccee-cccccc-cCCCccEEEcCCC-cCCC--CCccccCCCCCceEEcCCCccccccC-----cc-c
Q psy3781           4 KEAQVEQADLSYNRLHV-VNSKLF-DITSIRELDLSHN-LIQN--LPPDLLNLRHLVYMNLENNKLETIDI-----DF-N   72 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~-l~~~~~-~~~~l~~l~l~~~-~l~~--l~~~~~~~~~L~~L~l~~n~l~~~~~-----~~-~   72 (183)
                      .+++|+.|+++++.++. .+..+. .+++|+.|++++| .++.  ++..+..+++|++|++++|.++....     .. .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            46778888888877663 233333 4778888888877 4442  33444467788888888877654322     22 4


Q ss_pred             cCCCCeEeCCCCC--CC--CcchhccCCCCCcEEEcCCC
Q psy3781          73 FGHLRELNLSSNK--FQ--QIPKCIFHLDNLEILILNNN  107 (183)
Q Consensus        73 ~~~L~~L~l~~~~--~~--~~~~~~~~~~~L~~l~l~~n  107 (183)
                      +++|++|++++|.  ++  .+......+++|+.|++++|
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            5677777777775  22  11112233567777777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.05  E-value=4.7e-11  Score=93.95  Aligned_cols=80  Identities=16%  Similarity=0.151  Sum_probs=48.4

Q ss_pred             CCCCccEEecCCC-ccee--cccccccCCCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCccccccC-----c
Q psy3781           4 KEAQVEQADLSYN-RLHV--VNSKLFDITSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETIDI-----D   70 (183)
Q Consensus         4 ~~~~l~~l~l~~~-~i~~--l~~~~~~~~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~~~~~-----~   70 (183)
                      .+++|+.|++.+| .++.  ++.....+++|++|++++|.++.     ++.....+++|++|++++|. ..+..     .
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l  206 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL  206 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH
Confidence            4677888888777 5553  44444467788888888877653     22223346677777777775 21111     1


Q ss_pred             c-ccCCCCeEeCCCC
Q psy3781          71 F-NFGHLRELNLSSN   84 (183)
Q Consensus        71 ~-~~~~L~~L~l~~~   84 (183)
                      . .+++|++|++++|
T Consensus       207 ~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHCTTCCEEECCTT
T ss_pred             HHhCCCCcEEecCCC
Confidence            1 4467777777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.03  E-value=1e-10  Score=79.00  Aligned_cols=113  Identities=12%  Similarity=0.040  Sum_probs=83.9

Q ss_pred             cccccCCCccEEEcCCC-cCC-----CCCccccCCCCCceEEcCCCcccccc-----Ccc-ccCCCCeEeCCCCCCCC--
Q psy3781          23 SKLFDITSIRELDLSHN-LIQ-----NLPPDLLNLRHLVYMNLENNKLETID-----IDF-NFGHLRELNLSSNKFQQ--   88 (183)
Q Consensus        23 ~~~~~~~~l~~l~l~~~-~l~-----~l~~~~~~~~~L~~L~l~~n~l~~~~-----~~~-~~~~L~~L~l~~~~~~~--   88 (183)
                      ..+...+.|++|++++| .++     .+...+...+.|++|++++|.+.+-.     ..+ ..++|++|++++|.++.  
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            33446788999999998 887     24445666788999999999887432     222 55789999999999883  


Q ss_pred             ---cchhccCCCCCcEEEc--CCCcccccc---CchhhhcCCCccEEeCCCCCCc
Q psy3781          89 ---IPKCIFHLDNLEILIL--NNNDIEEIN---QPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        89 ---~~~~~~~~~~L~~l~l--~~n~~~~~~---~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                         +...+...++|+.|++  ++|.+.+.+   ....+...+.|+.|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               4556667788999999  889998754   1344455688999999999876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.98  E-value=4.7e-10  Score=75.78  Aligned_cols=115  Identities=14%  Similarity=0.052  Sum_probs=89.5

Q ss_pred             cccCCCCCceEEcCCC-ccccc-----cCcc-ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEEEcCCCccccccC
Q psy3781          47 DLLNLRHLVYMNLENN-KLETI-----DIDF-NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEILILNNNDIEEINQ  114 (183)
Q Consensus        47 ~~~~~~~L~~L~l~~n-~l~~~-----~~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~  114 (183)
                      .+...+.|++|++++| .+..-     ...+ ..++|++|++++|.++.     +...+...++|+.|++++|.+.+.+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3556889999999999 88743     2222 56789999999999982     44455567899999999999987541


Q ss_pred             ---chhhhcCCCccEEeC--CCCCCcc-----CChhccccCcccEEeccCCcCCCCc
Q psy3781         115 ---PEKLVKMQKLTVLDL--SNNNIRK-----IPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       115 ---~~~~~~~~~L~~l~l--~~n~l~~-----~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                         ...+...+.|++|++  ++|.+.+     +...+...++|+.|++++|.+...+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence               344556788999999  8899983     5556778899999999999876543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.63  E-value=4.2e-08  Score=72.92  Aligned_cols=151  Identities=13%  Similarity=0.177  Sum_probs=99.2

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCC-CCcccc--CCCCCceEEcCC--Cc------cccccCcc
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQN-LPPDLL--NLRHLVYMNLEN--NK------LETIDIDF   71 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~-l~~~~~--~~~~L~~L~l~~--n~------l~~~~~~~   71 (183)
                      ..+++|+.|++.++.-..+++ + .+++|+.|.+..+.++. ....+.  .+++|++|+++.  +.      +..+...+
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            457899999998873223443 2 47899999999988762 112232  689999999853  11      22222222


Q ss_pred             ---ccCCCCeEeCCCCCCCC-cchhc---cCCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCccC-Chh
Q psy3781          72 ---NFGHLRELNLSSNKFQQ-IPKCI---FHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIRKI-PYE  140 (183)
Q Consensus        72 ---~~~~L~~L~l~~~~~~~-~~~~~---~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~~~-~~~  140 (183)
                         .+++|++|++.+|.++. .+..+   ..+++|+.|+++.|.+.+.+.   ...+..+++|+.|++++|.+++- ...
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence               47899999999998872 22222   247899999999999987541   12234578999999999988732 222


Q ss_pred             ccccCcccEEeccCCc
Q psy3781         141 LGLAQQLHHLNLVGNC  156 (183)
Q Consensus       141 ~~~~~~L~~l~l~~n~  156 (183)
                      +...- -..++++++.
T Consensus       327 l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC-CSEEECCSBC
T ss_pred             HHHHc-CCEEEecCCc
Confidence            32211 2457887765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.56  E-value=3e-08  Score=70.49  Aligned_cols=62  Identities=29%  Similarity=0.407  Sum_probs=27.2

Q ss_pred             cCCCCeEeCCCCCCCCcc---hhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781          73 FGHLRELNLSSNKFQQIP---KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        73 ~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      +++|++|++++|+++.++   ..+..+++|+.|++++|.+++......+..+ +|+.|++.+|.++
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            444555555555554332   2222345555555555555443211222222 4555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.54  E-value=1.5e-06  Score=64.79  Aligned_cols=135  Identities=15%  Similarity=0.300  Sum_probs=90.2

Q ss_pred             CCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEE
Q psy3781          28 ITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILI  103 (183)
Q Consensus        28 ~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~  103 (183)
                      +.+++.+.+..+ ++.+.. .|..+..|+.+.+..+ ++.++..+  .+.+++.+.+..+ +..++. .+..+.+|+.+.
T Consensus       216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred             ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence            345555555433 333322 3556677888877664 66666655  6677888877543 555544 455678888888


Q ss_pred             cCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781         104 LNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGNCFKYPRQDILQKG  168 (183)
Q Consensus       104 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  168 (183)
                      +.++.++.++ ...|.++.+|+.+.+..+ ++.+.. ++.+|++|+.+.+..+ ++.++...|.+.
T Consensus       293 l~~~~i~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          293 MDNSAIETLE-PRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             ECCTTCCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccceeh-hhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            8888888777 778888888998888654 666654 4788888888888654 666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.47  E-value=1.7e-06  Score=64.91  Aligned_cols=143  Identities=15%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             CCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeC
Q psy3781           5 EAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNL   81 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l   81 (183)
                      +..++.+.+.+. +..+....+ .+..++.+.+..+...--...|.....++.+......   ++...  .+.+|+.+.+
T Consensus       229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKL  304 (394)
T ss_dssp             TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEE
T ss_pred             cCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecccccccccccccccc
Confidence            456777766543 344444444 6778888888776443333346667777777766543   33333  6778888887


Q ss_pred             CCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccEEeccCC
Q psy3781          82 SSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNLVGN  155 (183)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~l~l~~n  155 (183)
                      ..+ +..++. .+..+.+|+.+++..+ ++.++ ...|.++.+|+.+.+..+ ++.+.. ++.+|.+|+.+++..+
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG-KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC-TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEh-HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            654 666654 4556788888888643 66676 677888888888888766 666654 4788888888888654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.40  E-value=5.2e-06  Score=61.86  Aligned_cols=138  Identities=11%  Similarity=0.213  Sum_probs=99.9

Q ss_pred             CCCCCccEEecCCCcceecccccc-cCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCe
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLF-DITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRE   78 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~-~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~   78 (183)
                      ..+.+++.+.+..+ +..+....+ .+..|+.+.+..+ ++.+... |..+.+++.+.+..+ +..++...  .+.+|+.
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            44556666666543 444444443 6789999998775 6666554 667888999998654 67777766  7889999


Q ss_pred             EeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCc
Q psy3781          79 LNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQ  146 (183)
Q Consensus        79 L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~  146 (183)
                      +.+.++.++.++. .+..+.+|+.+.+..+ ++.++ ...|.+|.+|+.+.+..+ ++.+.. ++.+++.
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ-VYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH-HHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            9999988988865 5567899999999754 77776 788999999999988654 665543 3555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.40  E-value=1.6e-05  Score=59.57  Aligned_cols=80  Identities=16%  Similarity=0.357  Sum_probs=45.5

Q ss_pred             ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-hccccCcccE
Q psy3781          72 NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-ELGLAQQLHH  149 (183)
Q Consensus        72 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~L~~  149 (183)
                      .+..|+.+.+. +.+..++. .+..+.+|+.+++..+ ++.++ ...|.+|.+|+.+.+..+ ++.+.. ++.+|++|+.
T Consensus       286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL-DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN  361 (394)
T ss_dssp             TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred             cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh-HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence            34445555443 23444433 3334566777766543 55554 566666777777776543 555543 3667777777


Q ss_pred             EeccCC
Q psy3781         150 LNLVGN  155 (183)
Q Consensus       150 l~l~~n  155 (183)
                      +++.++
T Consensus       362 i~~~~~  367 (394)
T 4gt6_A          362 IEYSGS  367 (394)
T ss_dssp             EEESSC
T ss_pred             EEECCc
Confidence            777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=1.4e-07  Score=67.04  Aligned_cols=78  Identities=29%  Similarity=0.374  Sum_probs=48.3

Q ss_pred             CCCCCceEEcCCCccccccC---cc-ccCCCCeEeCCCCCCCCcchhccCCC--CCcEEEcCCCccccccC------chh
Q psy3781          50 NLRHLVYMNLENNKLETIDI---DF-NFGHLRELNLSSNKFQQIPKCIFHLD--NLEILILNNNDIEEINQ------PEK  117 (183)
Q Consensus        50 ~~~~L~~L~l~~n~l~~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~------~~~  117 (183)
                      .+++|+.|++++|.++.++.   .+ .+++|+.|++++|.++.+.. +..+.  +|+.|++.+|.+.+...      ...
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            46677777777777765543   22 66777777777777775522 22222  77888888887764210      134


Q ss_pred             hhcCCCccEEe
Q psy3781         118 LVKMQKLTVLD  128 (183)
Q Consensus       118 ~~~~~~L~~l~  128 (183)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56677888775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.29  E-value=1.5e-05  Score=59.74  Aligned_cols=125  Identities=10%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             cCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEE
Q psy3781          27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILI  103 (183)
Q Consensus        27 ~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~  103 (183)
                      ++..|+.+.+.....+--...|..+..|+.+.+. +.++.++..+  .+.+|+.+.+..+ ++.+.. .+..+.+|+.+.
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            5677888887655332222346778899999986 4577888776  7789999999764 777755 566689999999


Q ss_pred             cCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcC
Q psy3781         104 LNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCF  157 (183)
Q Consensus       104 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~  157 (183)
                      +..+ ++.++ ...|.+|++|+.+.+.++....  ..+..+..|+.+.+..+.+
T Consensus       341 ip~s-v~~I~-~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          341 IPSS-VTKIP-ESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ECTT-CCBCC-GGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred             ECcc-cCEEh-HhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence            9654 77777 7889999999999999875331  3466778888888776543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=4.2e-07  Score=60.45  Aligned_cols=60  Identities=18%  Similarity=0.179  Sum_probs=25.0

Q ss_pred             CCCCCcEEEcCCCc-cccccCchhhhcC----CCccEEeCCCCC-CccC-ChhccccCcccEEeccCC
Q psy3781          95 HLDNLEILILNNND-IEEINQPEKLVKM----QKLTVLDLSNNN-IRKI-PYELGLAQQLHHLNLVGN  155 (183)
Q Consensus        95 ~~~~L~~l~l~~n~-~~~~~~~~~~~~~----~~L~~l~l~~n~-l~~~-~~~~~~~~~L~~l~l~~n  155 (183)
                      .+++|+.|++++|. +++.+ ...++..    ++|+.|++++|. +|+- -..+..+++|+.|+++++
T Consensus        83 ~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A           83 GLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             TCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            34445555554442 44433 2233321    244555555442 4421 122344455555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.26  E-value=2.3e-05  Score=58.75  Aligned_cols=159  Identities=16%  Similarity=0.196  Sum_probs=103.6

Q ss_pred             CCCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc--ccCCCC
Q psy3781           1 MIAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF--NFGHLR   77 (183)
Q Consensus         1 ~l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~   77 (183)
                      +|..+..|+.+.+..+. ..+....+....++.+.+... ++.+.. .+..+..++.+.+..+.. .+....  .+..++
T Consensus       203 ~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~  279 (394)
T 4fs7_A          203 CFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLK  279 (394)
T ss_dssp             TTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCC
T ss_pred             hhccccccceeecCCCc-eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccc
Confidence            35566677776665542 233444455667888877653 344433 356677888888877643 344433  666777


Q ss_pred             eEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCC-hhccccCcccEEeccCCc
Q psy3781          78 ELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP-YELGLAQQLHHLNLVGNC  156 (183)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~L~~l~l~~n~  156 (183)
                      .+......+..  ..+..+.+|+.+.+..+ ++.++ ...|.++.+|+.+++..+ ++.+. .++.+|.+|+.+.+..+ 
T Consensus       280 ~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~-~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-  353 (394)
T 4fs7_A          280 KVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIG-EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-  353 (394)
T ss_dssp             EEEECSSEECT--TTTTTCTTCCEEEECTT-CCEEC-TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred             eeccCceeecc--ccccccccccccccccc-cceec-hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence            77665543221  24456778888888654 66666 677888899999988644 67665 34788889999988766 


Q ss_pred             CCCCcHHHhhhC
Q psy3781         157 FKYPRQDILQKG  168 (183)
Q Consensus       157 ~~~~~~~~~~~~  168 (183)
                      ++.++..+|...
T Consensus       354 l~~I~~~aF~~C  365 (394)
T 4fs7_A          354 LRKIGANAFQGC  365 (394)
T ss_dssp             CCEECTTTBTTC
T ss_pred             ccEehHHHhhCC
Confidence            777777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=8.2e-07  Score=59.03  Aligned_cols=92  Identities=13%  Similarity=0.196  Sum_probs=68.5

Q ss_pred             CCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCCCCC-CCCc-chhccCC----CCCcEEEcCCCc-cccccC
Q psy3781          44 LPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSNK-FQQI-PKCIFHL----DNLEILILNNND-IEEINQ  114 (183)
Q Consensus        44 l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~-~~~~-~~~~~~~----~~L~~l~l~~n~-~~~~~~  114 (183)
                      +|.....--.|+.|++++|.+++..-..  .+++|++|++++|. ++.- -..+..+    ++|+.|++++|. +++.+ 
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-  131 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-  131 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-
Confidence            3443333457999999999988654433  88999999999994 6621 1233332    479999999985 99887 


Q ss_pred             chhhhcCCCccEEeCCCCC-Ccc
Q psy3781         115 PEKLVKMQKLTVLDLSNNN-IRK  136 (183)
Q Consensus       115 ~~~~~~~~~L~~l~l~~n~-l~~  136 (183)
                      ...+..+++|+.|+++++. +++
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCCc
Confidence            6777889999999999985 664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.08  E-value=2.5e-06  Score=57.76  Aligned_cols=108  Identities=16%  Similarity=0.192  Sum_probs=74.8

Q ss_pred             cCCCccEEEcCCC-cCC-----CCCccccCCCCCceEEcCCCccccccCcc------ccCCCCeEeCCCCCCC-----Cc
Q psy3781          27 DITSIRELDLSHN-LIQ-----NLPPDLLNLRHLVYMNLENNKLETIDIDF------NFGHLRELNLSSNKFQ-----QI   89 (183)
Q Consensus        27 ~~~~l~~l~l~~~-~l~-----~l~~~~~~~~~L~~L~l~~n~l~~~~~~~------~~~~L~~L~l~~~~~~-----~~   89 (183)
                      .-+.|+.|+++++ .+.     .+...+...+.|+.|++++|.+.+.....      .-..|++|++++|.++     .+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4568889999885 766     24444666778999999999888443322      5568999999999988     34


Q ss_pred             chhccCCCCCcEEEcCCC---cccccc---CchhhhcCCCccEEeCCCCCC
Q psy3781          90 PKCIFHLDNLEILILNNN---DIEEIN---QPEKLVKMQKLTVLDLSNNNI  134 (183)
Q Consensus        90 ~~~~~~~~~L~~l~l~~n---~~~~~~---~~~~~~~~~~L~~l~l~~n~l  134 (183)
                      ...+.....|+.|+++++   .+.+.+   ....+..-+.|..++++.+.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            455666778999999765   444322   133445567889998876654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.01  E-value=6.7e-06  Score=55.66  Aligned_cols=110  Identities=12%  Similarity=0.128  Sum_probs=81.4

Q ss_pred             ccCCCCCceEEcCCC-cccccc-----Ccc-ccCCCCeEeCCCCCCC-----CcchhccCCCCCcEEEcCCCccccccCc
Q psy3781          48 LLNLRHLVYMNLENN-KLETID-----IDF-NFGHLRELNLSSNKFQ-----QIPKCIFHLDNLEILILNNNDIEEINQP  115 (183)
Q Consensus        48 ~~~~~~L~~L~l~~n-~l~~~~-----~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~n~~~~~~~~  115 (183)
                      +..-+.|+.|+++++ .+.+-.     ..+ .-..|++|++++|.++     .+...+....+|+.|++++|.|.+.+ .
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-L  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-H
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-H
Confidence            345678999999985 776422     222 5678999999999998     45566667889999999999998765 3


Q ss_pred             hh----hhcCCCccEEeCCCCC---Cc-----cCChhccccCcccEEeccCCcCC
Q psy3781         116 EK----LVKMQKLTVLDLSNNN---IR-----KIPYELGLAQQLHHLNLVGNCFK  158 (183)
Q Consensus       116 ~~----~~~~~~L~~l~l~~n~---l~-----~~~~~~~~~~~L~~l~l~~n~~~  158 (183)
                      ..    +..-+.|+.|+++++.   +.     .+...+...++|+.|+++.|.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            33    3344679999998653   33     34555778899999999876543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.74  E-value=0.0001  Score=46.55  Aligned_cols=55  Identities=18%  Similarity=0.291  Sum_probs=26.6

Q ss_pred             eEeCCCCCCC--CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781          78 ELNLSSNKFQ--QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        78 ~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                      .++.++++++  .+|..+.  ++++.|++++|.++.+. ...|..+++|+.|++.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCee
Confidence            4444444444  4443322  24555555555555554 444445555555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.71  E-value=0.0001  Score=46.49  Aligned_cols=53  Identities=26%  Similarity=0.263  Sum_probs=26.9

Q ss_pred             EEecCCCcce--ecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCcc
Q psy3781          10 QADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKL   64 (183)
Q Consensus        10 ~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l   64 (183)
                      .++.+++.++  .+|..+.  .+++.|+|++|+|+.++.. |..+++|++|++.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555555  5554431  2455555555555555443 33455555555555544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=83.14  E-value=1.8  Score=25.50  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=18.6

Q ss_pred             ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCC
Q psy3781          93 IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN  131 (183)
Q Consensus        93 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~  131 (183)
                      +..+.+|+.+.+..+ ++.++ ...|.+|.+|+.+.+.+
T Consensus        16 F~~c~~L~~i~iP~~-v~~Ig-~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           16 FAGNTVIREITVQPN-IGLLY-DGMFSGCTALEKLILTG   52 (100)
T ss_dssp             TTTCTTCCCEEECTT-SSCCC-TTSSTTCTTCCCEEECC
T ss_pred             hcCCCCCcEEEcCCc-hheEc-HHHHhccCCccEEEEcC
Confidence            334555555555432 33443 44555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           DL+ N++  +   L  +T + EL L  N I N+ P L  L  L  + L  N+LE I    
Sbjct: 247 DLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 304

Query: 72  NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSN 131
           N  +L  L L  N    I   +  L  L+ L   NN + +      L  +  +  L   +
Sbjct: 305 NLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGH 360

Query: 132 NNIRKIPYELGLAQQLHHLNLVGN 155
           N I  +   L    ++  L L   
Sbjct: 361 NQISDLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 26/151 (17%)

Query: 29  TSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQ 88
           T++ EL L+ N ++++   L +L +L  ++L NN++  +        L EL L +N+   
Sbjct: 219 TNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 277

Query: 89  IP---------------------KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
           I                        I +L NL  L L  N+I +I     +  + KL  L
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRL 334

Query: 128 DLSNNNIRKIPYELGLAQQLHHLNLVGNCFK 158
             +NN +  +   L     ++ L+   N   
Sbjct: 335 FFANNKVSDVS-SLANLTNINWLSAGHNQIS 364

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 50  NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
            L +L  +   NN++  I       +L EL+L+ N+ + I   +  L NL  L L NN I
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQI 253

Query: 110 EEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGT 169
             +     L  + KLT L L  N I  I    GL    +                L+  T
Sbjct: 254 SNL---APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 170 PFLLSY 175
              L +
Sbjct: 311 YLTLYF 316

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 70  DFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDL 129
           D       +  L              LD +  L  +   I+ I   + +  +  LT ++ 
Sbjct: 18  DTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINF 73

Query: 130 SNNNIRKIP 138
           SNN +  I 
Sbjct: 74  SNNQLTDIT 82

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 50  NLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDI 109
            L   +   L    +       +   +  L       + I   + +L+NL  +  +NN +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL 78

Query: 110 EEINQPEKLVKMQKL 124
            +I   + L K+  +
Sbjct: 79  TDITPLKNLTKLVDI 93

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.6 bits (128), Expect = 2e-10
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 32  RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPK 91
           R L L+H  +  L   L  L  + +++L +N+L  +          E+  +S+   +   
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 92  CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP-YELGLAQQLHHL 150
            + +L  L+ L+L NN +++    + LV   +L +L+L  N++ +    +  LA+ L  +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 151 N 151
           +
Sbjct: 120 S 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-06
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 56  YMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQP 115
            ++L +  L  +        +  L+LS N+ + +P  +  L  LE+L         +   
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL---QASDNALENV 58

Query: 116 EKLVKMQKLTVLDLSNNNIRKIP--YELGLAQQLHHLNLVGNCF 157
           + +  + +L  L L NN +++      L    +L  LNL GN  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 7e-09
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 26  FDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK 85
               S+ EL++S+N +  LP     L  L       N L  +       +L++L++  N 
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP--ELPQNLKQLHVEYNP 335

Query: 86  FQQIPKCIFHLDNLEI 101
            ++ P     +++L +
Sbjct: 336 LREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 8e-08
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 71  FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS 130
                L ELN+S+NK  ++P        LE LI + N + E+ +       Q L  L + 
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPE-----LPQNLKQLHVE 332

Query: 131 NNNIRKIPYELGLAQQLHHLNL 152
            N +R+ P        +  L +
Sbjct: 333 YNPLREFPDIPE---SVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 37  SHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHL 96
           S N I++L     +L  L   N+ NNKL  +        L  L  S N   ++P+     
Sbjct: 272 SSNEIRSLCDLPPSLEEL---NVSNNKLIELP--ALPPRLERLIASFNHLAEVPEL---P 323

Query: 97  DNLEILILNNNDIEEI-NQPEKLVKMQ 122
            NL+ L +  N + E  + PE +  ++
Sbjct: 324 QNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-05
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF 71
           ++S N+L  + +       +  L  S N +  +P    NL+ L   ++E N L       
Sbjct: 290 NVSNNKLIELPA---LPPRLERLIASFNHLAEVPELPQNLKQL---HVEYNPLREFPD-- 341

Query: 72  NFGHLRELNLSS 83
               + +L ++S
Sbjct: 342 IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 88  QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQL 147
           +I        +LE L ++NN + E+  P       +L  L  S N++ ++P      Q L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIEL--PALP---PRLERLIASFNHLAEVPELP---QNL 326

Query: 148 HHLNLVGNCFK 158
             L++  N  +
Sbjct: 327 KQLHVEYNPLR 337

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 7   QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLE 65
           ++    ++   +  +   L    S+ EL L  N I  +    L  L +L  + L  N + 
Sbjct: 151 KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 66  TIDIDFNFGH--LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ-----PEKL 118
            +D         LREL+L++NK  ++P  +     ++++ L+NN+I  I       P   
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 119 VKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLV 153
            K    + + L +N ++    +    + ++    V
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 5/167 (2%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
             S   L  V   L        LDL +N I  +      NL++L  + L NNK+  I   
Sbjct: 16  QCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73

Query: 71  --FNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLD 128
                  L  L LS N+ +++P+ +        +  N       +    L +M  + +  
Sbjct: 74  AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 133

Query: 129 LSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQKGTPFLLSY 175
               +           ++L ++ +         Q +    T   L  
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 180

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 1/123 (0%)

Query: 37  SHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHL 96
                         ++ L Y+ + +  + TI        L EL+L  NK  ++       
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKG 193

Query: 97  DNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNC 156
            N    +  + +         L     L  L L+NN + K+P  L   + +  + L  N 
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

Query: 157 FKY 159
              
Sbjct: 254 ISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 9/158 (5%)

Query: 12  DLSYNRLHVVNSKLFD-ITSIRELDLSHNLIQNLPPDLLNLRHLVYMN---LENNKLETI 67
            L  N++  ++   F  +  +  L LS N ++ LP  +      + ++   +   +    
Sbjct: 61  ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120

Query: 68  DIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVL 127
           +       +                   +  L  + + + +I  I Q         LT L
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----LPPSLTEL 176

Query: 128 DLSNNNIRK-IPYELGLAQQLHHLNLVGNCFKYPRQDI 164
            L  N I K     L     L  L L  N         
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 7e-07
 Identities = 14/66 (21%), Positives = 28/66 (42%)

Query: 57  MNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPE 116
           + L    +E      N    REL+L   K   I      LD  + +  ++N+I +++   
Sbjct: 1   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 117 KLVKMQ 122
            L +++
Sbjct: 61  LLRRLK 66

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 23  SKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS 82
           ++  +    RELDL    I  +      L     ++  +N++  +D       L+ L ++
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN 71

Query: 83  SNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIP-YE 140
           +N+           L +L  LIL NN + E+   + L  ++ LT L +  N +     Y 
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131

Query: 141 LGLAQQLHHL 150
           L +  ++  +
Sbjct: 132 LYVIYKVPQV 141

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 112 INQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY 159
           I Q  +     +   LDL    I  I        Q   ++   N  + 
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK 55

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 30/192 (15%), Positives = 51/192 (26%), Gaps = 50/192 (26%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDID 70
           +     L  +   L        L LS NL+       L+    L  +NL+  +L  + +D
Sbjct: 16  NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73

Query: 71  FNFGHLRELNL-----------------------------------------------SS 83
                L  L+L                                                 
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 84  NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGL 143
           N+ + +P  +         +   N+         L  ++ L  L L  N++  IP     
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 144 AQQLHHLNLVGN 155
           +  L    L GN
Sbjct: 194 SHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 27 DITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLSSN 84
           + S  E++     +  LPPDL   +    ++L  N L T  +     +  L +LNL   
Sbjct: 8  KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 85 KFQQIPKCIF 94
          +  ++     
Sbjct: 66 ELTKLQVDGT 75

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 7e-06
 Identities = 29/161 (18%), Positives = 47/161 (29%), Gaps = 7/161 (4%)

Query: 12  DLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID 70
                 L  V   +    + + + L  N I ++P       R+L  + L +N L  ID  
Sbjct: 17  SCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 71  FNFGHLRELNLSSNKFQQI----PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTV 126
              G      L  +   Q+    P     L  L  L L+   ++E+             +
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 127 LDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQDILQK 167
               N               L HL L GN      +   + 
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 19  HVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRH-LVYMNLENNKLETI--DIDFNFGH 75
            V  +    +  +  L L    +Q L P L      L Y+ L++N L+ +  D   + G+
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 76  LRELNLSSNKFQQIPKCIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNI 134
           L  L L  N+   +P+  F  L +L+ L+L+ N +  ++        + +T+   +NN  
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 135 RKIPYELGLAQQLHHLNLVGNCF 157
                 L   + L +L L  N +
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPW 237

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 3/140 (2%)

Query: 19  HVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNKLETIDID--FNFGH 75
            +       + +++ L L  N +Q LP D   +L +L ++ L  N++ ++          
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 76  LRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR 135
           L  L L  N+   +    F      + +    +       E L  ++ L  L L++N   
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

Query: 136 KIPYELGLAQQLHHLNLVGN 155
                  L   L       +
Sbjct: 239 CDCRARPLWAWLQKFRGSSS 258

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 7e-05
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 12  DLSYNRLH-VVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKL 64
           DL  NR++  +   L  +  +  L++S N +    P   NL+        NNK 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 35  DLSHN-LIQNLPPDLLNLRHLVYMNLENNKLE-TIDIDFNFGHLRELNLSSNKFQ---QI 89
           DL +N +   LP  L  L+ L  +N+  N L   I    N         ++NK      +
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 90  PKC 92
           P C
Sbjct: 310 PAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 80  NLSSNKFQ-QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNN 133
           +L +N+    +P+ +  L  L  L ++ N++    +  +   +Q+  V   +NN 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 86  FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQ 145
              + K     +   + + NN     +  P+ L +++ L  L++S NN+     + G  Q
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTL--PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 146 QLHHLNLVGN 155
           +        N
Sbjct: 292 RFDVSAYANN 301

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 8e-05
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 2/123 (1%)

Query: 35  DLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCIF 94
           +L    ++ L   +          L+   L +            LN  S+    +     
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 95  HLDNLEILILNNNDIEEINQPEKLV-KMQKLTVLDLSNNNIRKIPY-ELGLAQQLHHLNL 152
           ++  L  L L+NN +  ++    +V K   L +L+LS N ++     +     +L  L L
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 153 VGN 155
            GN
Sbjct: 123 DGN 125

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 13  LSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFN 72
           L  +   + N       +  +     N   +    L NL  L  +  ++NK+  I    +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193

Query: 73  FGHLRELNLSSNKFQQIPKCIFHLDNLEILILNN 106
             +L E++L +N+   +   + +  NL I+ L N
Sbjct: 194 LPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 4/131 (3%)

Query: 32  RELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET-IDIDFNFGHLRELNLSSNKF--QQ 88
           + LDL+   +       L  + ++      + ++  +   F+   ++ ++LS++      
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 89  IPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLH 148
           +   +     L+ L L    + +      L K   L  L+LS  +         L     
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 149 HLNLVGNCFKY 159
            L+ +   + +
Sbjct: 122 RLDELNLSWCF 132

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.002
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 98  NLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNI-----RKIPYELGLAQQLHHLNL 152
           +++ L +   ++ +    E L  +Q+  V+ L +  +     + I   L +   L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 153 VGNCF 157
             N  
Sbjct: 63  RSNEL 67

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 19  HVVNSKLFDITSIRELDLSHNLIQNLPPDLL-NLRHLVYMNLENNK 63
            + N      +    LD+S   I +LP   L NL+ L   +  N K
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 9/70 (12%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 75  HLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSN 131
            L+   +++   + +   +   D+++ ++L+ N I         E +   + L + + S+
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 132 NNIRKIPYEL 141
               ++  E+
Sbjct: 69  IFTGRVKDEI 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.75
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.75
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.7
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.58
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.89

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.5e-22  Score=140.32  Aligned_cols=152  Identities=25%  Similarity=0.289  Sum_probs=96.9

Q ss_pred             CccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--------------
Q psy3781           7 QVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--------------   71 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--------------   71 (183)
                      ++++|++++|.|+.+++.. .++++|++|++++|+++.++. +..+++|++|++++|.++..+..+              
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            4566666666666555432 345566666666665554432 234455555555555554443333              


Q ss_pred             -----------ccCCCCeEeCCCCCCCCcchh-ccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh
Q psy3781          72 -----------NFGHLRELNLSSNKFQQIPKC-IFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY  139 (183)
Q Consensus        72 -----------~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~  139 (183)
                                 .+.+++++++.+|.++.++.. +..++.++.+++++|.++.+. +..++.+++|++|++++|.++.+|+
T Consensus       111 ~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~L~~lp~  189 (266)
T d1p9ag_         111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPK  189 (266)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC-ccccccccccceeecccCCCcccCh
Confidence                       344455555555555555443 334677888888888887775 5667778888888888888888888


Q ss_pred             hccccCcccEEeccCCcCCCC
Q psy3781         140 ELGLAQQLHHLNLVGNCFKYP  160 (183)
Q Consensus       140 ~~~~~~~L~~l~l~~n~~~~~  160 (183)
                      .+..+++|+.|++++|++...
T Consensus       190 ~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTTTTCCCSEEECCSCCBCCS
T ss_pred             hHCCCCCCCEEEecCCCCCCC
Confidence            777788888888888887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.5e-21  Score=136.14  Aligned_cols=161  Identities=25%  Similarity=0.317  Sum_probs=128.8

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS   82 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~   82 (183)
                      +...+.+++++++.++.+|+.+.  +++++|++++|.++.++. .|.++++|++|++++|.++.++....+++|++|+++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS   85 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccc
Confidence            45567788999999999998774  589999999999998875 488899999999999999988866688999999999


Q ss_pred             CCCCCCcchhccCCCCCcEEEcCCCccccccC-----------------------chhhhcCCCccEEeCCCCCCccCCh
Q psy3781          83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQ-----------------------PEKLVKMQKLTVLDLSNNNIRKIPY  139 (183)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-----------------------~~~~~~~~~L~~l~l~~n~l~~~~~  139 (183)
                      +|+++..+..+..+++|+.++++++.+..+..                       +..+..++.++.+++++|.++.++.
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             cccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc
Confidence            99988776666666777777776665544320                       3444556778888888888887765


Q ss_pred             h-ccccCcccEEeccCCcCCCCcHHHhh
Q psy3781         140 E-LGLAQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       140 ~-~~~~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                      . +..+++|++|++++|.++..+..++.
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~~lp~~~~~  193 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLYTIPKGFFG  193 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccccccccceeecccCCCcccChhHCC
Confidence            4 77888999999999999888777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=2.2e-19  Score=121.61  Aligned_cols=151  Identities=24%  Similarity=0.333  Sum_probs=132.2

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS   83 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~   83 (183)
                      .+.+++.|++.++.+..+. ++..+++|++|++++|+++.+++ +..+++|++|++++|.+..++....++.|+.+++++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN  115 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccccccccccccccccc
Confidence            3578999999999999875 46789999999999999998765 888999999999999998887544889999999999


Q ss_pred             CCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781          84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      +....++ .+..+++|+.+++++|.+..+   ..+..+++++.+++.+|.+++++. +.++++|+.|++++|++++.+
T Consensus       116 ~~~~~~~-~~~~l~~L~~L~l~~n~l~~~---~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         116 NQITDID-PLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             SCCCCCG-GGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccc-ccchhhhhHHhhhhhhhhccc---ccccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc
Confidence            9888764 466789999999999999775   357889999999999999998864 889999999999999998865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=2.9e-19  Score=122.00  Aligned_cols=150  Identities=28%  Similarity=0.401  Sum_probs=122.8

Q ss_pred             CCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCC
Q psy3781           5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSN   84 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~   84 (183)
                      +.+++.|++.++.+..++. +..+++|++|++++|+++.+++ +..+++|++|++++|.++.++....+++|+.+++++|
T Consensus        45 L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS
T ss_pred             hcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccccccccccccccccccc
Confidence            5578899999998887753 6678899999999999988764 5678899999999999988775337888999999999


Q ss_pred             CCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCc
Q psy3781          85 KFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus        85 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      .+..++ .+..++.++.+++++|.+++.   ..+..+++|+.+++++|.+++++. +..+++|+.|++++|.++..+
T Consensus       123 ~~~~~~-~l~~l~~l~~l~~~~n~l~~~---~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         123 GISDIN-GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             CCCCCG-GGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             cccccc-ccccccccccccccccccccc---cccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh
Confidence            887764 456778899999999888764   356678889999999999888764 788889999999999887754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=1.3e-18  Score=124.98  Aligned_cols=90  Identities=27%  Similarity=0.326  Sum_probs=68.9

Q ss_pred             CCeEeCCCCCCCCc-chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccC
Q psy3781          76 LRELNLSSNKFQQI-PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVG  154 (183)
Q Consensus        76 L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~  154 (183)
                      +++|++++|..... +..+..++.++.|++++|.+.++. +..+..+++|++|++++|.++.+|.++..+++|++|++++
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCS
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccc-cccccccccceeeecccccccccccccccccCCCEEECCC
Confidence            34444444443322 234445677888888888888876 6778889999999999999999998899999999999999


Q ss_pred             CcCCCCcHHHhh
Q psy3781         155 NCFKYPRQDILQ  166 (183)
Q Consensus       155 n~~~~~~~~~~~  166 (183)
                      |+++.++...|.
T Consensus       252 N~i~~i~~~~f~  263 (305)
T d1xkua_         252 NNISAIGSNDFC  263 (305)
T ss_dssp             SCCCCCCTTSSS
T ss_pred             CccCccChhhcc
Confidence            999988776654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2e-18  Score=122.81  Aligned_cols=161  Identities=22%  Similarity=0.287  Sum_probs=118.8

Q ss_pred             CccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCC--------------------------CccccCCCCCceEEc
Q psy3781           7 QVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNL--------------------------PPDLLNLRHLVYMNL   59 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l--------------------------~~~~~~~~~L~~L~l   59 (183)
                      .++.|++++|.|+.+++. +.++++|++++++++++..+                          +..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            567888888888877765 44677888888887766421                          122455678888888


Q ss_pred             CCCccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCcc
Q psy3781          60 ENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRK  136 (183)
Q Consensus        60 ~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~  136 (183)
                      ++|.+..++...  ...+|+.+++++|.++.++. .+..+++++.|++++|.+..+. +..+.++++|+.+++++|.++.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~-~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc-hhhhccccccchhhhhhccccc
Confidence            888877666554  56778888888888887765 3445777888888888888776 6677778888888888888775


Q ss_pred             C-ChhccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781         137 I-PYELGLAQQLHHLNLVGNCFKYPRQDILQKG  168 (183)
Q Consensus       137 ~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  168 (183)
                      + |..+..++++++|++++|.+.+.++..+...
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             cChhHhhhhhhcccccccccccccccccccccc
Confidence            5 4557778888888888888888887777553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.2e-18  Score=118.95  Aligned_cols=146  Identities=29%  Similarity=0.383  Sum_probs=127.4

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL   81 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l   81 (183)
                      +.++++|++|++++|.++.+++ +..+++|+.+++++|+++.++ .+..+++|+.+++++|.+..++....++.++++++
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~  141 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL  141 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred             HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            4678999999999999998875 567999999999999999886 57889999999999999888765448889999999


Q ss_pred             CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccC
Q psy3781          82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVG  154 (183)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~  154 (183)
                      ++|.++..+ ....+++|+.+++++|.++++.   .++.+++|+.|++++|.+++++ .+.++++|++|++++
T Consensus       142 ~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~---~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         142 GNNKITDIT-VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccc-cccccccccccccccccccccc---cccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            999998764 3556899999999999998763   4788999999999999999986 489999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.5e-18  Score=117.40  Aligned_cols=142  Identities=28%  Similarity=0.429  Sum_probs=124.1

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL   81 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l   81 (183)
                      +.++++|++|++++|.++.+++ +.++++|+.+++++|.+..++. +..++.|+.++++++....++....+++|+.+++
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l  135 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  135 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-cccccccccccccccccccccccchhhhhHHhhh
Confidence            5678999999999999998875 7789999999999999988764 7889999999999999887665448899999999


Q ss_pred             CCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEE
Q psy3781          82 SSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHL  150 (183)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l  150 (183)
                      ++|++..++ .+..+++++.+++.+|.++++.   .++++++|+.|++++|.+++++ .++.+++|+.|
T Consensus       136 ~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~---~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         136 SSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK---PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             hhhhhcccc-cccccccccccccccccccCCc---cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            999998775 4677899999999999998873   4788999999999999999986 47888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=2.7e-19  Score=120.53  Aligned_cols=128  Identities=26%  Similarity=0.333  Sum_probs=102.5

Q ss_pred             CccEEecCCCcceecccccccCCCccEEEcCCCcCCC-CC-ccccCCCCCceEEcCCCccccccCcc--ccCCCCeEeCC
Q psy3781           7 QVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQN-LP-PDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELNLS   82 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~-l~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~   82 (183)
                      +.++++++++.++.+|.++.  +++++|++++|+++. ++ ..|..+++|+.|++++|.+..++...  .+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            35678888888888888764  688889999998874 43 34677888999999998888777665  77888889999


Q ss_pred             CCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccC
Q psy3781          83 SNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKI  137 (183)
Q Consensus        83 ~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~  137 (183)
                      +|+++.+++ .+..+++|+.|++++|.++.+. +..|..+++|+++++++|.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccC-HHHhcCCcccccccccccccccc
Confidence            998888865 4556888889999998888886 67788888888888888887743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.5e-18  Score=113.62  Aligned_cols=132  Identities=22%  Similarity=0.228  Sum_probs=108.4

Q ss_pred             ccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcchhc-cCCCCCcEEEc
Q psy3781          26 FDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIPKCI-FHLDNLEILIL  104 (183)
Q Consensus        26 ~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l~l  104 (183)
                      .+..++++|++++|+++.++..+..+++|++|++++|.++.++....+++|++|++++|+++.++..+ ..+++++.|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            45678999999999999988767778999999999999998854338889999999999999887654 45899999999


Q ss_pred             CCCccccccCchhhhcCCCccEEeCCCCCCccCCh----hccccCcccEEeccCCcCCC
Q psy3781         105 NNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY----ELGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus       105 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~----~~~~~~~L~~l~l~~n~~~~  159 (183)
                      ++|.++++.....+..+++|+++++++|.+++.+.    .+..+++|++||  +..++.
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~  151 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKL  151 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCH
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCH
Confidence            99999887533567889999999999999998874    377889999876  434443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.4e-17  Score=113.59  Aligned_cols=152  Identities=22%  Similarity=0.322  Sum_probs=113.2

Q ss_pred             CCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCC
Q psy3781           4 KEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSS   83 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~   83 (183)
                      .+.+|+.|++.+|.++.++ ++..+++|+++++++|.++.+.+ +..+++++++++++|.++.++....++.|+.+.+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred             HcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-cccccccccccccccccccccccccccccccccccc
Confidence            3557778888888877773 56677888888888887776543 666777777777777777665433666666666666


Q ss_pred             CCCC----------------------CcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhc
Q psy3781          84 NKFQ----------------------QIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYEL  141 (183)
Q Consensus        84 ~~~~----------------------~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~  141 (183)
                      +...                      .. ..+..+++++.+++++|.+.+.   ..++.+++|+.+++++|.+++++. +
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~l~~l~~-l  191 (227)
T d1h6ua2         117 TQITDVTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISDISP-L  191 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             ccccccchhccccchhhhhchhhhhchh-hhhccccccccccccccccccc---hhhcccccceecccCCCccCCChh-h
Confidence            6433                      22 1244567899999999988765   347889999999999999998865 7


Q ss_pred             cccCcccEEeccCCcCCCCcH
Q psy3781         142 GLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus       142 ~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      ..+++|++|++++|++++.++
T Consensus       192 ~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             GGCTTCCEEECTTSCCCBCGG
T ss_pred             cCCCCCCEEECcCCcCCCCcc
Confidence            889999999999999988764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.9e-17  Score=117.71  Aligned_cols=160  Identities=24%  Similarity=0.372  Sum_probs=134.4

Q ss_pred             CCCCCCCccEEecCCCcceecc-------------------------c-ccccCCCccEEEcCCCcCCCCCcc-ccCCCC
Q psy3781           1 MIAKEAQVEQADLSYNRLHVVN-------------------------S-KLFDITSIRELDLSHNLIQNLPPD-LLNLRH   53 (183)
Q Consensus         1 ~l~~~~~l~~l~l~~~~i~~l~-------------------------~-~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~   53 (183)
                      +|..+++|+.++++++.+..++                         + .+..+++|+.+++++|.+..++.. +....+
T Consensus        51 ~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  130 (284)
T d1ozna_          51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA  130 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             HhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcc
Confidence            3667788888888887765321                         2 233567899999999998876554 556788


Q ss_pred             CceEEcCCCccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCC
Q psy3781          54 LVYMNLENNKLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLS  130 (183)
Q Consensus        54 L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~  130 (183)
                      |+.+++++|.++.+++..  .+.++++|++++|+++.++. .+..+++|+.+++++|.+.++. +..+..+++|++++++
T Consensus       131 L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~-~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECC
T ss_pred             cchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC-hhHhhhhhhccccccc
Confidence            999999999999998765  77899999999999998865 5567999999999999999987 7889999999999999


Q ss_pred             CCCCccCCh-hccccCcccEEeccCCcCCCCc
Q psy3781         131 NNNIRKIPY-ELGLAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       131 ~n~l~~~~~-~~~~~~~L~~l~l~~n~~~~~~  161 (183)
                      +|.++.++. .+..+++|+.+++++|++.+.-
T Consensus       210 ~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             SSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccccccccccccccccccCEEEecCCCCCCCc
Confidence            999998875 4889999999999999998763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.3e-17  Score=104.35  Aligned_cols=102  Identities=32%  Similarity=0.477  Sum_probs=46.5

Q ss_pred             EEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCc
Q psy3781          10 QADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQI   89 (183)
Q Consensus        10 ~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~   89 (183)
                      +|++++|.++.++. +.++++|++|++++|.++.+|+.+..+++|++|++++|.++.++.                    
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~--------------------   60 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--------------------   60 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc--------------------
Confidence            34444444444432 334444444444444444444444444444444444444444332                    


Q ss_pred             chhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc
Q psy3781          90 PKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        90 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~  135 (183)
                         +..+++|+.+++++|.++++.....++.+++|+.+++++|.++
T Consensus        61 ---~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          61 ---VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ---GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ---cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence               3344445555555554444421233444455555555555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=3.8e-17  Score=120.28  Aligned_cols=153  Identities=27%  Similarity=0.380  Sum_probs=121.5

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS   82 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~   82 (183)
                      ..+++++.+++.+|.+..++ .+..+++++.+++++|.++.+++ +..+++|++++++++.+..+++...+..++.+.+.
T Consensus       216 ~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~  293 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELN  293 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             cccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCcccccccccccccc
Confidence            44678999999999988765 45678899999999999987764 77788999999999998877654477778888888


Q ss_pred             CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCCCcH
Q psy3781          83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      .|.++.++. +..+++++.+++++|.++++.   .+..+++|+.|++++|.+++++ .+..+++|++|++++|++++.++
T Consensus       294 ~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         294 ENQLEDISP-ISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             SSCCSCCGG-GGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             ccccccccc-cchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh
Confidence            888876643 556778888888888887763   3677888888888888888776 47788888888888888887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.7e-17  Score=110.58  Aligned_cols=130  Identities=23%  Similarity=0.310  Sum_probs=113.1

Q ss_pred             ccEEEcCCCcCCCCCccccCCCCCceEEcCCCcccc-ccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCC
Q psy3781          31 IRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLET-IDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNN  106 (183)
Q Consensus        31 l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~  106 (183)
                      .+.++.++++++.+|..+.  +++++|++++|.++. ++...  .+++|++|++++|.+..++. .+..+++|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4578999999999998764  689999999999975 44443  78999999999999998755 566799999999999


Q ss_pred             CccccccCchhhhcCCCccEEeCCCCCCccCChh-ccccCcccEEeccCCcCCCCcHH
Q psy3781         107 NDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus       107 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      |+++.+. +..|.++++|++|++++|.++.++.. +..+++|+++++++|++......
T Consensus        88 N~l~~l~-~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          88 NKIKEIS-NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCCEEC-SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ccccccC-HHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch
Confidence            9999987 77899999999999999999998765 78999999999999999876543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.1e-18  Score=109.85  Aligned_cols=125  Identities=22%  Similarity=0.296  Sum_probs=107.9

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN   80 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~   80 (183)
                      .....+++|++++|.|+.++.....+++|+.|++++|.++.++ .+..+++|++|++++|.++.+++..  .++++++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            3566899999999999999866567899999999999999884 5888999999999999999998876  789999999


Q ss_pred             CCCCCCCCcch--hccCCCCCcEEEcCCCccccccC--chhhhcCCCccEEe
Q psy3781          81 LSSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQ--PEKLVKMQKLTVLD  128 (183)
Q Consensus        81 l~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~~~L~~l~  128 (183)
                      +++|+++.++.  .+..+++|+.+++++|+++....  ...+..+++|+.||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999998754  56678999999999999987631  23577899999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=2.5e-17  Score=103.00  Aligned_cols=85  Identities=28%  Similarity=0.326  Sum_probs=71.0

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCc--c-ccCCCCe
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDID--F-NFGHLRE   78 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~--~-~~~~L~~   78 (183)
                      +..++.|++|++++|.+..+|+.+..+++|+.+++++|.++.++ .+..+++|+++++++|.++.++..  + .+++|++
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL   94 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCE
Confidence            56788999999999999999988889999999999999999886 488899999999999988876642  2 5566666


Q ss_pred             EeCCCCCCC
Q psy3781          79 LNLSSNKFQ   87 (183)
Q Consensus        79 L~l~~~~~~   87 (183)
                      +++++|.++
T Consensus        95 L~l~~N~i~  103 (124)
T d1dcea3          95 LNLQGNSLC  103 (124)
T ss_dssp             EECTTSGGG
T ss_pred             EECCCCcCC
Confidence            666666655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=9.8e-17  Score=118.04  Aligned_cols=146  Identities=27%  Similarity=0.403  Sum_probs=86.2

Q ss_pred             CCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCC
Q psy3781           3 AKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLS   82 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~   82 (183)
                      ..+++++.+++.+|.+..+++ +..+++|+.++++++.++.+++ +..++.++.+++..|.+..++....++++++++++
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls  315 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY  315 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECC
T ss_pred             hcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCc-cccccccccccccccccccccccchhcccCeEECC
Confidence            345566666666666665543 4455666666666666665432 44555666666666666554432255666666666


Q ss_pred             CCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCC
Q psy3781          83 SNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGN  155 (183)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n  155 (183)
                      +|+++.+++ +..+++|+.|++++|.++++  + .++.+++|++|++++|.++++++ +.++++|+.|++++|
T Consensus       316 ~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l--~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         316 FNNISDISP-VSSLTKLQRLFFANNKVSDV--S-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCSCCGG-GGGCTTCCEEECCSSCCCCC--G-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCCCcc-cccCCCCCEEECCCCCCCCC--h-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            666665532 44556666666666666554  2 35556666666666666666544 556666666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=2.1e-16  Score=113.23  Aligned_cols=154  Identities=21%  Similarity=0.323  Sum_probs=110.9

Q ss_pred             CCccEEecCCCcceecccc-cccCCCccEEEcCCCcCCCCCc-cccCCCCCceEEcCCCccccccCcc------------
Q psy3781           6 AQVEQADLSYNRLHVVNSK-LFDITSIRELDLSHNLIQNLPP-DLLNLRHLVYMNLENNKLETIDIDF------------   71 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~-~~~~~~l~~l~l~~~~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~------------   71 (183)
                      +++++|++++|.|+.+++. +..+++|+++++++|.+..+++ .|..+++|++|++++|+++.++...            
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence            4688889988888888875 4578888889998888887744 4777888888888888766444221            


Q ss_pred             -------------------------------------ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccC
Q psy3781          72 -------------------------------------NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQ  114 (183)
Q Consensus        72 -------------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  114 (183)
                                                           .+++++.+++++|.++.++...  .++++.|++++|...... 
T Consensus       111 ~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~-  187 (305)
T d1xkua_         111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVD-  187 (305)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEEC-
T ss_pred             chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCC-
Confidence                                                 2233444444444444443322  355666777776666654 


Q ss_pred             chhhhcCCCccEEeCCCCCCccCC-hhccccCcccEEeccCCcCCCCcH
Q psy3781         115 PEKLVKMQKLTVLDLSNNNIRKIP-YELGLAQQLHHLNLVGNCFKYPRQ  162 (183)
Q Consensus       115 ~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~L~~l~l~~n~~~~~~~  162 (183)
                      +..+..++.++.|++++|.+++++ .++.++++|++|++++|.++..+.
T Consensus       188 ~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~  236 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  236 (305)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             hhHhhccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            667778888999999999999774 457889999999999999988764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.7e-16  Score=107.55  Aligned_cols=148  Identities=18%  Similarity=0.244  Sum_probs=117.0

Q ss_pred             EecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCCCCCcc
Q psy3781          11 ADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNKFQQIP   90 (183)
Q Consensus        11 l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~~~~~~   90 (183)
                      ++++.+.++++. ...++.+|+.+++.+|.++.++ .+..+++|++|++++|.++.+.+...+++++++++++|.++.++
T Consensus        24 ~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          24 IAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             HHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG
T ss_pred             HHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccccc
Confidence            345555555432 3346789999999999999884 68899999999999999998776448899999999999998875


Q ss_pred             hhccCCCCCcEEEcCCCcccccc-------------------CchhhhcCCCccEEeCCCCCCccCChhccccCcccEEe
Q psy3781          91 KCIFHLDNLEILILNNNDIEEIN-------------------QPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLN  151 (183)
Q Consensus        91 ~~~~~~~~L~~l~l~~n~~~~~~-------------------~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~  151 (183)
                       .+..+++|+.++++++...+..                   ....+..+++|+.+++++|.+++.+. +..+++|+.|+
T Consensus       102 -~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~  179 (227)
T d1h6ua2         102 -AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLK  179 (227)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             -cccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceecc
Confidence             4667889999999888754321                   12345567789999999998887654 78899999999


Q ss_pred             ccCCcCCCCcH
Q psy3781         152 LVGNCFKYPRQ  162 (183)
Q Consensus       152 l~~n~~~~~~~  162 (183)
                      +++|.+++.++
T Consensus       180 Ls~n~l~~l~~  190 (227)
T d1h6ua2         180 ADDNKISDISP  190 (227)
T ss_dssp             CCSSCCCCCGG
T ss_pred             cCCCccCCChh
Confidence            99999988654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.70  E-value=4.8e-17  Score=117.10  Aligned_cols=160  Identities=21%  Similarity=0.219  Sum_probs=92.3

Q ss_pred             CCCCCCccEEecCC-Ccce-ecccccccCCCccEEEcCCCcCCCCC-ccccCCCCCceEEcCCCcccc-ccCcc-ccCCC
Q psy3781           2 IAKEAQVEQADLSY-NRLH-VVNSKLFDITSIRELDLSHNLIQNLP-PDLLNLRHLVYMNLENNKLET-IDIDF-NFGHL   76 (183)
Q Consensus         2 l~~~~~l~~l~l~~-~~i~-~l~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~-~~~~~-~~~~L   76 (183)
                      +.++++|++|++++ |.+. .+|+.+.++++|++|++++|++..++ ..+....+|+++++++|.+.. ++..+ .++.+
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccc
Confidence            34556666666654 4555 45666666666666666666554322 223334444444444443321 12222 44444


Q ss_pred             CeEeCCCCCCC-Ccchhc------------------------------------------------cCCCCCcEEEcCCC
Q psy3781          77 RELNLSSNKFQ-QIPKCI------------------------------------------------FHLDNLEILILNNN  107 (183)
Q Consensus        77 ~~L~l~~~~~~-~~~~~~------------------------------------------------~~~~~L~~l~l~~n  107 (183)
                      +.+++++|.+. .+|..+                                                ..+++++.++++++
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             ceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44444444333 122222                                                22334445555555


Q ss_pred             ccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEEeccCCcCCCCcHH
Q psy3781         108 DIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHLNLVGNCFKYPRQD  163 (183)
Q Consensus       108 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~  163 (183)
                      .+...  +..++.++.++.|++++|.++ .+|..+..+++|++|++++|.++|..|.
T Consensus       232 ~l~~~--~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         232 SLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EECCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccc--ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            55443  445666788999999999999 7899999999999999999999876554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.69  E-value=1.6e-16  Score=114.37  Aligned_cols=87  Identities=24%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             ccCCCCeEeCCCCCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCc-cCChhccccCcccEE
Q psy3781          72 NFGHLRELNLSSNKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIR-KIPYELGLAQQLHHL  150 (183)
Q Consensus        72 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~~~L~~l  150 (183)
                      .+.+++.+++.++.+...++.+..+++++.|++++|++++.. |..++.+++|++|++++|.++ .+|. +..+++|+.+
T Consensus       219 ~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~i-P~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l  296 (313)
T d1ogqa_         219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS  296 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC-CGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGG
T ss_pred             ccccccccccccccccccccccccccccccccCccCeecccC-ChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHH
Confidence            334566677777777655566777899999999999999654 888999999999999999999 6775 6788999999


Q ss_pred             eccCCc-CCCC
Q psy3781         151 NLVGNC-FKYP  160 (183)
Q Consensus       151 ~l~~n~-~~~~  160 (183)
                      ++.+|+ +.+.
T Consensus       297 ~l~~N~~l~g~  307 (313)
T d1ogqa_         297 AYANNKCLCGS  307 (313)
T ss_dssp             GTCSSSEEEST
T ss_pred             HhCCCccccCC
Confidence            999997 4443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.63  E-value=2.7e-18  Score=115.97  Aligned_cols=151  Identities=24%  Similarity=0.285  Sum_probs=119.0

Q ss_pred             CccEEecCCC--cceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCcc-ccCCCCeEeCCC
Q psy3781           7 QVEQADLSYN--RLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDF-NFGHLRELNLSS   83 (183)
Q Consensus         7 ~l~~l~l~~~--~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~   83 (183)
                      ..+.+++.+.  .+..++..+..+++|+.|++++|+++.++ .+..+++|++|++++|.++.++... .+++|++|++++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            4556666654  46667777888999999999999999885 5888999999999999999887655 567899999999


Q ss_pred             CCCCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh-----------hccccCcccEEec
Q psy3781          84 NKFQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY-----------ELGLAQQLHHLNL  152 (183)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-----------~~~~~~~L~~l~l  152 (183)
                      |.++.++ .+..+++|+.|++++|.++++.....+..+++|+.|++++|+++..+.           .+..+++|+.|| 
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD-  180 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD-  180 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES-
T ss_pred             ccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC-
Confidence            9999874 466788999999999999887423567889999999999998763211           156788998876 


Q ss_pred             cCCcCCCCc
Q psy3781         153 VGNCFKYPR  161 (183)
Q Consensus       153 ~~n~~~~~~  161 (183)
                       +.+++...
T Consensus       181 -~~~I~~~e  188 (198)
T d1m9la_         181 -GMPVDVDE  188 (198)
T ss_dssp             -SGGGTTTT
T ss_pred             -CccCCHHH
Confidence             55665443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-14  Score=99.35  Aligned_cols=160  Identities=21%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             CccEEecCCCcceeccccc-ccCCCccEEEcCCCcCCC-CCc-cccCCCCCceEEcCC-CccccccCcc--ccCCCCeEe
Q psy3781           7 QVEQADLSYNRLHVVNSKL-FDITSIRELDLSHNLIQN-LPP-DLLNLRHLVYMNLEN-NKLETIDIDF--NFGHLRELN   80 (183)
Q Consensus         7 ~l~~l~l~~~~i~~l~~~~-~~~~~l~~l~l~~~~l~~-l~~-~~~~~~~L~~L~l~~-n~l~~~~~~~--~~~~L~~L~   80 (183)
                      ++++|++++|.|..++... .++++|+++++++|.+.. ++. .|..++.++++.+.. +.+...+...  .+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            7889999999999888765 478899999999988764 333 366677777777643 4566555544  677777777


Q ss_pred             CCCCCCCCcch--------------------------hccC-CCCCcEEEcCCCccccccCchhhhcCCCccEE-eCCCC
Q psy3781          81 LSSNKFQQIPK--------------------------CIFH-LDNLEILILNNNDIEEINQPEKLVKMQKLTVL-DLSNN  132 (183)
Q Consensus        81 l~~~~~~~~~~--------------------------~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l-~l~~n  132 (183)
                      +.++++...+.                          .+.. ...++.+++.+|.++.+.  ......+++..+ .+.+|
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~--~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH--NCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC--TTTTTTCCEEEEECTTCT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccc--cccccchhhhcccccccc
Confidence            77776553211                          1111 124556677777777663  333344554444 56778


Q ss_pred             CCccCChh-ccccCcccEEeccCCcCCCCcHHHhhhC
Q psy3781         133 NIRKIPYE-LGLAQQLHHLNLVGNCFKYPRQDILQKG  168 (183)
Q Consensus       133 ~l~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~  168 (183)
                      .++++|.. +.++++|++|++++|+++..++..|.+-
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence            89998765 7889999999999999998887766654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.54  E-value=5.7e-17  Score=109.41  Aligned_cols=131  Identities=22%  Similarity=0.257  Sum_probs=107.0

Q ss_pred             CCCCCCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeC
Q psy3781           2 IAKEAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNL   81 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l   81 (183)
                      |..+++|+.|++++|.|..++ .+..+++|+.|++++|.++.++..+...+.|++|++++|.++.++....+++|+.|++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L  122 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEE
T ss_pred             HhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345789999999999999885 5778999999999999999988766667789999999999998764338899999999


Q ss_pred             CCCCCCCcch--hccCCCCCcEEEcCCCccccccCc---------hhhhcCCCccEEeCCCCCCc
Q psy3781          82 SSNKFQQIPK--CIFHLDNLEILILNNNDIEEINQP---------EKLVKMQKLTVLDLSNNNIR  135 (183)
Q Consensus        82 ~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~---------~~~~~~~~L~~l~l~~n~l~  135 (183)
                      ++|+++.++.  .+..+++|+.|++++|++......         ..+..+++|+.||  +..++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            9999998753  567899999999999988654211         1256789999887  44444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.7e-14  Score=89.82  Aligned_cols=106  Identities=19%  Similarity=0.148  Sum_probs=78.8

Q ss_pred             CCCccEEecCCCcceecccccccCCCccEEEcCCC-cCCCCCcc-ccCCCCCceEEcCCCccccccCcc--ccCCCCeEe
Q psy3781           5 EAQVEQADLSYNRLHVVNSKLFDITSIRELDLSHN-LIQNLPPD-LLNLRHLVYMNLENNKLETIDIDF--NFGHLRELN   80 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~-~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~   80 (183)
                      +...+.+++.++.+.+.+..+..++++++|++.++ .++.++.. |.++++|+.|++++|.++.+++.+  .+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            44566777887777777777777788888888655 47776654 677888888888888888776654  777888888


Q ss_pred             CCCCCCCCcchhccCCCCCcEEEcCCCccc
Q psy3781          81 LSSNKFQQIPKCIFHLDNLEILILNNNDIE  110 (183)
Q Consensus        81 l~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  110 (183)
                      +++|+++.++...+...+++.|++++|++.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCccc
Confidence            888888877776665556778888887764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.6e-13  Score=87.77  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=46.3

Q ss_pred             cEEEcCCCcCCCCCccccCCCCCceEEcCCC-ccccccCcc--ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCC
Q psy3781          32 RELDLSHNLIQNLPPDLLNLRHLVYMNLENN-KLETIDIDF--NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNN  107 (183)
Q Consensus        32 ~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n-~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n  107 (183)
                      +.++..++++...|..+..+++++.|++.++ .++.++...  .+++|+.|++++|+++.+++ .+..+++|+.|++++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3445555555555555555555555555433 244444332  44445555555555544432 2334444555555555


Q ss_pred             ccccccCchhhhcCCCccEEeCCCCCC
Q psy3781         108 DIEEINQPEKLVKMQKLTVLDLSNNNI  134 (183)
Q Consensus       108 ~~~~~~~~~~~~~~~~L~~l~l~~n~l  134 (183)
                      .++.+. ...+. ...++.|++++|.+
T Consensus        91 ~l~~l~-~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLS-WKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCC-STTTC-SCCCCEEECCSSCC
T ss_pred             CCcccC-hhhhc-cccccccccCCCcc
Confidence            544442 22222 22344444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.4e-14  Score=100.17  Aligned_cols=157  Identities=20%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             CCCCccEEecCCCcce-ecccccccCCCccEEEcCCC-cCCC--CCccccCCCCCceEEcCCCc-cccc--cCcc--ccC
Q psy3781           4 KEAQVEQADLSYNRLH-VVNSKLFDITSIRELDLSHN-LIQN--LPPDLLNLRHLVYMNLENNK-LETI--DIDF--NFG   74 (183)
Q Consensus         4 ~~~~l~~l~l~~~~i~-~l~~~~~~~~~l~~l~l~~~-~l~~--l~~~~~~~~~L~~L~l~~n~-l~~~--~~~~--~~~   74 (183)
                      .+++|+.|+++++.+. .....+.++++|+.|++++| .++.  +...+..+++|++|++++|. +++.  ....  ..+
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~  148 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  148 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence            3444444444444443 22233334444555555443 2321  11112334455555555542 2211  1111  224


Q ss_pred             CCCeEeCCCCC--CC--CcchhccCCCCCcEEEcCCCc-cccccCchhhhcCCCccEEeCCCC-CCcc-CChhccccCcc
Q psy3781          75 HLRELNLSSNK--FQ--QIPKCIFHLDNLEILILNNND-IEEINQPEKLVKMQKLTVLDLSNN-NIRK-IPYELGLAQQL  147 (183)
Q Consensus        75 ~L~~L~l~~~~--~~--~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n-~l~~-~~~~~~~~~~L  147 (183)
                      .|+.|+++++.  ++  .+......+++|+.|++++|. +++.. ...+..+++|++|++++| .+++ ....+..+++|
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchh-hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            45555555431  22  122222345667777776653 55444 455666677777777764 4542 22335666777


Q ss_pred             cEEeccCCcCCCCcH
Q psy3781         148 HHLNLVGNCFKYPRQ  162 (183)
Q Consensus       148 ~~l~l~~n~~~~~~~  162 (183)
                      +.|+++++ +.....
T Consensus       228 ~~L~l~~~-~~d~~l  241 (284)
T d2astb2         228 KTLQVFGI-VPDGTL  241 (284)
T ss_dssp             CEEECTTS-SCTTCH
T ss_pred             CEEeeeCC-CCHHHH
Confidence            77777665 443333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-13  Score=94.96  Aligned_cols=158  Identities=20%  Similarity=0.241  Sum_probs=108.2

Q ss_pred             ccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCcc-ccCCCCCceEEcCCCcccc-ccCcc--ccCCCCeEeCCC
Q psy3781           8 VEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPD-LLNLRHLVYMNLENNKLET-IDIDF--NFGHLRELNLSS   83 (183)
Q Consensus         8 l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~-~~~~~--~~~~L~~L~l~~   83 (183)
                      -+.+++++..++.+|+.+.  .++++|++++|.++.++.. |.++++|++|++++|.+.. ++...  .++.++++.+..
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4678898888999998774  5899999999999988875 7889999999999998875 45544  788899988754


Q ss_pred             -CCCCCcch-hccCCCCCcEEEcCCCccccccCchhhhcCC-------------------------CccEEeCCCCCCcc
Q psy3781          84 -NKFQQIPK-CIFHLDNLEILILNNNDIEEINQPEKLVKMQ-------------------------KLTVLDLSNNNIRK  136 (183)
Q Consensus        84 -~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~-------------------------~L~~l~l~~n~l~~  136 (183)
                       +++...+. .+..+++|+.+++.++.+...........+.                         .++.+++.+|.++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             56766644 5667899999999999886553212222233                         34445555555555


Q ss_pred             CChhccccCcccEE-eccCCcCCCCcHHHhhh
Q psy3781         137 IPYELGLAQQLHHL-NLVGNCFKYPRQDILQK  167 (183)
Q Consensus       137 ~~~~~~~~~~L~~l-~l~~n~~~~~~~~~~~~  167 (183)
                      ++......+++..+ .+++|.++..+.+.|.+
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~  199 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHG  199 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTT
T ss_pred             cccccccchhhhccccccccccccccHHHhcC
Confidence            54443333443333 34555666655555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.8e-14  Score=98.88  Aligned_cols=163  Identities=20%  Similarity=0.230  Sum_probs=119.1

Q ss_pred             CCCccEEecCCCcce--ecccccccCCCccEEEcCCCcCC-CCCccccCCCCCceEEcCCC-cccccc--Ccc-ccCCCC
Q psy3781           5 EAQVEQADLSYNRLH--VVNSKLFDITSIRELDLSHNLIQ-NLPPDLLNLRHLVYMNLENN-KLETID--IDF-NFGHLR   77 (183)
Q Consensus         5 ~~~l~~l~l~~~~i~--~l~~~~~~~~~l~~l~l~~~~l~-~l~~~~~~~~~L~~L~l~~n-~l~~~~--~~~-~~~~L~   77 (183)
                      ..+++.|+++++.+.  .+...+..+++|++|.+++|.++ .....+..+++|++|++++| .+++..  ... .+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            457999999999887  34555567999999999999887 34455677899999999996 465322  223 678999


Q ss_pred             eEeCCCC-CCC--CcchhccC-CCCCcEEEcCCC--ccccccCchhhhcCCCccEEeCCCCC-Cc-cCChhccccCcccE
Q psy3781          78 ELNLSSN-KFQ--QIPKCIFH-LDNLEILILNNN--DIEEINQPEKLVKMQKLTVLDLSNNN-IR-KIPYELGLAQQLHH  149 (183)
Q Consensus        78 ~L~l~~~-~~~--~~~~~~~~-~~~L~~l~l~~n--~~~~~~~~~~~~~~~~L~~l~l~~n~-l~-~~~~~~~~~~~L~~  149 (183)
                      +|++++| .++  .+...+.. .+.|+.++++++  .+++.+.......+++|++|++++|. ++ +....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            9999997 454  22222333 578999999875  45554424455679999999999874 66 44566888999999


Q ss_pred             EeccCC-cCCCCcHHHhhh
Q psy3781         150 LNLVGN-CFKYPRQDILQK  167 (183)
Q Consensus       150 l~l~~n-~~~~~~~~~~~~  167 (183)
                      |+++++ .+++.....+.+
T Consensus       205 L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGG
T ss_pred             EECCCCCCCChHHHHHHhc
Confidence            999995 576665555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.32  E-value=6e-11  Score=85.48  Aligned_cols=139  Identities=21%  Similarity=0.260  Sum_probs=99.7

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK   85 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~   85 (183)
                      .+++.|+++++.++.+|+.   .++|++|++++|+++.+|..+   .+|+.|++.+|.++.++..  .+.|++|++++|.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh--ccccccccccccc
Confidence            3688999999999988864   468999999999999988653   5899999999998877642  3468999999999


Q ss_pred             CCCcchhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCChhccccCcccEEeccCCcCCC
Q psy3781          86 FQQIPKCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPYELGLAQQLHHLNLVGNCFKY  159 (183)
Q Consensus        86 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~L~~l~l~~n~~~~  159 (183)
                      +..+|. ...+++|+.+++.++.+....  ..   ...+..+.+..+..... ..+..++.++.+++++|.+..
T Consensus       110 l~~lp~-~~~l~~L~~L~l~~~~~~~~~--~~---~~~l~~l~~~~~~~~~~-~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         110 LEKLPE-LQNSSFLKIIDVDNNSLKKLP--DL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSCCSCCC--CC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccc-hhhhccceeeccccccccccc--cc---cccccchhhcccccccc-ccccccccceecccccccccc
Confidence            998875 467889999999998876552  22   23444555544443332 224455556666666655443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.30  E-value=9e-13  Score=95.61  Aligned_cols=159  Identities=21%  Similarity=0.211  Sum_probs=93.2

Q ss_pred             CCCCCCccEEecCCCccee-----cccccccCCCccEEEcCCCcCCC---------------------------------
Q psy3781           2 IAKEAQVEQADLSYNRLHV-----VNSKLFDITSIRELDLSHNLIQN---------------------------------   43 (183)
Q Consensus         2 l~~~~~l~~l~l~~~~i~~-----l~~~~~~~~~l~~l~l~~~~l~~---------------------------------   43 (183)
                      +..+++|+.|++++|.++.     +...+...++|+.+++++|.++.                                 
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            3456777788887777662     34444456677777777665421                                 


Q ss_pred             ---------CCccccCCCCCceEEcCCCcccc------ccCcc-ccCCCCeEeCCCCCCCC-----cchhccCCCCCcEE
Q psy3781          44 ---------LPPDLLNLRHLVYMNLENNKLET------IDIDF-NFGHLRELNLSSNKFQQ-----IPKCIFHLDNLEIL  102 (183)
Q Consensus        44 ---------l~~~~~~~~~L~~L~l~~n~l~~------~~~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l  102 (183)
                               +...+...+.++.|++++|.++.      +...+ ..++|++|++++|.++.     +...+...++|+.|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence                     01112334567777777776653      12222 55667777777776652     33345556777777


Q ss_pred             EcCCCccccccCchhh----hc--CCCccEEeCCCCCCcc-----CChhcc-ccCcccEEeccCCcCCCCc
Q psy3781         103 ILNNNDIEEINQPEKL----VK--MQKLTVLDLSNNNIRK-----IPYELG-LAQQLHHLNLVGNCFKYPR  161 (183)
Q Consensus       103 ~l~~n~~~~~~~~~~~----~~--~~~L~~l~l~~n~l~~-----~~~~~~-~~~~L~~l~l~~n~~~~~~  161 (183)
                      ++++|.+++.+ ...+    ..  .+.|++|++++|.++.     +...+. ..+.|+.|++++|.+....
T Consensus       249 ~Ls~n~i~~~g-~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         249 GLNDCLLSARG-AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             ECTTCCCCHHH-HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hhhcCccCchh-hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            77777776543 2222    11  2457777777777662     333332 4567777777777776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.27  E-value=2.2e-12  Score=93.49  Aligned_cols=137  Identities=23%  Similarity=0.185  Sum_probs=62.2

Q ss_pred             cCCCccEEEcCCCcCCC-----CCccccCCCCCceEEcCCCcccccc---------C-----cc-ccCCCCeEeCCCCCC
Q psy3781          27 DITSIRELDLSHNLIQN-----LPPDLLNLRHLVYMNLENNKLETID---------I-----DF-NFGHLRELNLSSNKF   86 (183)
Q Consensus        27 ~~~~l~~l~l~~~~l~~-----l~~~~~~~~~L~~L~l~~n~l~~~~---------~-----~~-~~~~L~~L~l~~~~~   86 (183)
                      .+++|+.+++++|.++.     +...+...++|++|++++|.+....         .     .. ..+.++.+.++++.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            34566666666666552     2222334566666666666543100         0     00 122334444444433


Q ss_pred             CC-----cchhccCCCCCcEEEcCCCccccccC----chhhhcCCCccEEeCCCCCCc-----cCChhccccCcccEEec
Q psy3781          87 QQ-----IPKCIFHLDNLEILILNNNDIEEINQ----PEKLVKMQKLTVLDLSNNNIR-----KIPYELGLAQQLHHLNL  152 (183)
Q Consensus        87 ~~-----~~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~~~L~~l~l~~n~l~-----~~~~~~~~~~~L~~l~l  152 (183)
                      +.     +...+...++++.+++++|.+.+.+.    ...+...+.|+.|++++|.++     .+...+..+++|++|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            31     11122234455555555555543210    122334455555665555554     12333445555555555


Q ss_pred             cCCcCCCCcHH
Q psy3781         153 VGNCFKYPRQD  163 (183)
Q Consensus       153 ~~n~~~~~~~~  163 (183)
                      ++|.+++.+..
T Consensus       251 s~n~i~~~g~~  261 (344)
T d2ca6a1         251 NDCLLSARGAA  261 (344)
T ss_dssp             TTCCCCHHHHH
T ss_pred             hcCccCchhhH
Confidence            55555544433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.13  E-value=1.9e-09  Score=77.42  Aligned_cols=79  Identities=23%  Similarity=0.312  Sum_probs=65.9

Q ss_pred             CCccEEecCCCcceecccccccCCCccEEEcCCCcCCCCCccccCCCCCceEEcCCCccccccCccccCCCCeEeCCCCC
Q psy3781           6 AQVEQADLSYNRLHVVNSKLFDITSIRELDLSHNLIQNLPPDLLNLRHLVYMNLENNKLETIDIDFNFGHLRELNLSSNK   85 (183)
Q Consensus         6 ~~l~~l~l~~~~i~~l~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~   85 (183)
                      ++|+.|++++|.|+++|..   ..+|+.|++.+|+++.++..   .+.|++|++++|.+..++....+.+|++++++++.
T Consensus        58 ~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---ccccccccccccccccccchhhhccceeecccccc
Confidence            5899999999999999865   46899999999999877642   24699999999999998865588899999999988


Q ss_pred             CCCcc
Q psy3781          86 FQQIP   90 (183)
Q Consensus        86 ~~~~~   90 (183)
                      +...+
T Consensus       132 ~~~~~  136 (353)
T d1jl5a_         132 LKKLP  136 (353)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            76443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.1e-12  Score=92.74  Aligned_cols=86  Identities=23%  Similarity=0.266  Sum_probs=37.4

Q ss_pred             CCCCeEeCCCCCCCC-----cchhcc-CCCCCcEEEcCCCccccccC---chhhhcCCCccEEeCCCCCCcc-----CCh
Q psy3781          74 GHLRELNLSSNKFQQ-----IPKCIF-HLDNLEILILNNNDIEEINQ---PEKLVKMQKLTVLDLSNNNIRK-----IPY  139 (183)
Q Consensus        74 ~~L~~L~l~~~~~~~-----~~~~~~-~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~l~l~~n~l~~-----~~~  139 (183)
                      ++|++|++++|.++.     ++..+. ..+.|+.|++++|.+++.+.   ...+..+++|++|++++|.+++     +..
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~  419 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE  419 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHH
Confidence            345555555555441     222222 23445555555555544220   1223334555555555555541     111


Q ss_pred             hcc-ccCcccEEeccCCcCCC
Q psy3781         140 ELG-LAQQLHHLNLVGNCFKY  159 (183)
Q Consensus       140 ~~~-~~~~L~~l~l~~n~~~~  159 (183)
                      .+. ..+.|+.+++.++.+..
T Consensus       420 ~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         420 SVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHhCCCccCEEECCCCCCCH
Confidence            222 12245555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.3e-10  Score=86.31  Aligned_cols=164  Identities=21%  Similarity=0.163  Sum_probs=118.6

Q ss_pred             CCCCCccEEecCCCccee------cccccccCCCccEEEcCCCcCCCC-----CccccCCCCCceEEcCCCccccccC--
Q psy3781           3 AKEAQVEQADLSYNRLHV------VNSKLFDITSIRELDLSHNLIQNL-----PPDLLNLRHLVYMNLENNKLETIDI--   69 (183)
Q Consensus         3 ~~~~~l~~l~l~~~~i~~------l~~~~~~~~~l~~l~l~~~~l~~l-----~~~~~~~~~L~~L~l~~n~l~~~~~--   69 (183)
                      ...+.++.+++.++.+..      ..........++.+++++|.+...     ...+...+.++.+++++|.++....  
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            346788999999987651      222233467899999999988732     2335567899999999998874221  


Q ss_pred             ---cc--ccCCCCeEeCCCCCCCCc-----chhccCCCCCcEEEcCCCccccccC---chhhh-cCCCccEEeCCCCCCc
Q psy3781          70 ---DF--NFGHLRELNLSSNKFQQI-----PKCIFHLDNLEILILNNNDIEEINQ---PEKLV-KMQKLTVLDLSNNNIR  135 (183)
Q Consensus        70 ---~~--~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~-~~~~L~~l~l~~n~l~  135 (183)
                         ..  ....++.++++++.++..     ...+...++|+.|++++|.+++.+.   ...+. ..+.|+.|++++|.++
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence               11  345799999999988732     2233456789999999999976541   12222 3567999999999998


Q ss_pred             c-----CChhccccCcccEEeccCCcCCCCcHHHhh
Q psy3781         136 K-----IPYELGLAQQLHHLNLVGNCFKYPRQDILQ  166 (183)
Q Consensus       136 ~-----~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  166 (183)
                      +     ++..+..+++|++|++++|+++..+...+.
T Consensus       383 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~  418 (460)
T d1z7xw1         383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV  418 (460)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHH
Confidence            3     455577889999999999999877666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.4e-10  Score=71.92  Aligned_cols=79  Identities=27%  Similarity=0.270  Sum_probs=47.0

Q ss_pred             ccCCCCeEeCCCCCCCCcc---hhccCCCCCcEEEcCCCccccccCchhhhcCCCccEEeCCCCCCccCCh--------h
Q psy3781          72 NFGHLRELNLSSNKFQQIP---KCIFHLDNLEILILNNNDIEEINQPEKLVKMQKLTVLDLSNNNIRKIPY--------E  140 (183)
Q Consensus        72 ~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~--------~  140 (183)
                      .++.|++|++++|+++.++   ..+..+++|+.|++++|.++++. .........++.+++++|+++....        .
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~-~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGG-GHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccch-hhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4566777777777776543   23345677777777777777664 2233334457777777777663321        1


Q ss_pred             ccccCcccEEe
Q psy3781         141 LGLAQQLHHLN  151 (183)
Q Consensus       141 ~~~~~~L~~l~  151 (183)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45566776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.4e-09  Score=69.11  Aligned_cols=81  Identities=28%  Similarity=0.295  Sum_probs=60.7

Q ss_pred             ccCCCCCceEEcCCCccccccCc---c-ccCCCCeEeCCCCCCCCcch-hccCCCCCcEEEcCCCccccccC------ch
Q psy3781          48 LLNLRHLVYMNLENNKLETIDID---F-NFGHLRELNLSSNKFQQIPK-CIFHLDNLEILILNNNDIEEINQ------PE  116 (183)
Q Consensus        48 ~~~~~~L~~L~l~~n~l~~~~~~---~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~------~~  116 (183)
                      +..++.|++|++++|.++.+++.   + .+++|+.|++++|.++.++. .......++.+++.+|++.....      ..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            34688999999999999877643   2 67899999999999998765 33345578999999999876431      12


Q ss_pred             hhhcCCCccEEe
Q psy3781         117 KLVKMQKLTVLD  128 (183)
Q Consensus       117 ~~~~~~~L~~l~  128 (183)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            355678898876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.39  E-value=1.8e-07  Score=60.43  Aligned_cols=105  Identities=15%  Similarity=0.185  Sum_probs=59.3

Q ss_pred             CCCccEEEcCCC-cCC-----CCCccccCCCCCceEEcCCCccccccC-----cc-ccCCCCeEeCCCCCCCC-----cc
Q psy3781          28 ITSIRELDLSHN-LIQ-----NLPPDLLNLRHLVYMNLENNKLETIDI-----DF-NFGHLRELNLSSNKFQQ-----IP   90 (183)
Q Consensus        28 ~~~l~~l~l~~~-~l~-----~l~~~~~~~~~L~~L~l~~n~l~~~~~-----~~-~~~~L~~L~l~~~~~~~-----~~   90 (183)
                      .++|++|+++++ .++     .+...+...+.|++|++++|.+..-..     .+ ..+.|++|++++|.++.     +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            456666666653 344     122234445567777777766653211     11 44567777777777762     33


Q ss_pred             hhccCCCCCcEEEcCCCcccccc------CchhhhcCCCccEEeCCCC
Q psy3781          91 KCIFHLDNLEILILNNNDIEEIN------QPEKLVKMQKLTVLDLSNN  132 (183)
Q Consensus        91 ~~~~~~~~L~~l~l~~n~~~~~~------~~~~~~~~~~L~~l~l~~n  132 (183)
                      ..+...++|+.|++.+|.+..++      ....+...+.|+.++++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            34555677888888777654432      1233344567777777554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.38  E-value=3.6e-07  Score=58.90  Aligned_cols=107  Identities=12%  Similarity=0.115  Sum_probs=75.0

Q ss_pred             CCCCCceEEcCCC-cccc-----ccCcc-ccCCCCeEeCCCCCCC-----CcchhccCCCCCcEEEcCCCccccccC---
Q psy3781          50 NLRHLVYMNLENN-KLET-----IDIDF-NFGHLRELNLSSNKFQ-----QIPKCIFHLDNLEILILNNNDIEEINQ---  114 (183)
Q Consensus        50 ~~~~L~~L~l~~n-~l~~-----~~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~n~~~~~~~---  114 (183)
                      ..+.|+.|+++++ .+..     +...+ ..+++++|++++|.++     .+...+...+.|+.|++++|.+++.+.   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3578999999874 4552     11122 5578999999999887     334455567889999999999887541   


Q ss_pred             chhhhcCCCccEEeCCCCCCccC--------ChhccccCcccEEeccCCc
Q psy3781         115 PEKLVKMQKLTVLDLSNNNIRKI--------PYELGLAQQLHHLNLVGNC  156 (183)
Q Consensus       115 ~~~~~~~~~L~~l~l~~n~l~~~--------~~~~~~~~~L~~l~l~~n~  156 (183)
                      ...+...+.|+.|++++|.+..+        ...+...++|+.++++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            22344457799999998866543        3445678889999887764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.09  E-value=1.4e-06  Score=55.96  Aligned_cols=107  Identities=13%  Similarity=0.078  Sum_probs=60.1

Q ss_pred             cCCCccEEEcCC-CcCC-----CCCccccCCCCCceEEcCCCcccccc-----Ccc-ccCCCCeEeCCCCCCC-----Cc
Q psy3781          27 DITSIRELDLSH-NLIQ-----NLPPDLLNLRHLVYMNLENNKLETID-----IDF-NFGHLRELNLSSNKFQ-----QI   89 (183)
Q Consensus        27 ~~~~l~~l~l~~-~~l~-----~l~~~~~~~~~L~~L~l~~n~l~~~~-----~~~-~~~~L~~L~l~~~~~~-----~~   89 (183)
                      +.+.|++|++++ +.++     .+...+...+.|++|++++|.++.-.     ..+ ...+++.+++.++.++     .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            346666666665 3344     12233445666777777777665221     122 4566777777777665     23


Q ss_pred             chhccCCCCCcEEEc--CCCcccccc---CchhhhcCCCccEEeCCCCC
Q psy3781          90 PKCIFHLDNLEILIL--NNNDIEEIN---QPEKLVKMQKLTVLDLSNNN  133 (183)
Q Consensus        90 ~~~~~~~~~L~~l~l--~~n~~~~~~---~~~~~~~~~~L~~l~l~~n~  133 (183)
                      ...+...++++.+++  ++|.+.+.+   ....+...+.|+.|++..+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            344555677776554  455665532   12334456778888776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.89  E-value=6.4e-06  Score=52.70  Aligned_cols=109  Identities=15%  Similarity=0.094  Sum_probs=73.1

Q ss_pred             cCCCCCceEEcCC-Cccccc-----cCcc-ccCCCCeEeCCCCCCC-----CcchhccCCCCCcEEEcCCCccccccC--
Q psy3781          49 LNLRHLVYMNLEN-NKLETI-----DIDF-NFGHLRELNLSSNKFQ-----QIPKCIFHLDNLEILILNNNDIEEINQ--  114 (183)
Q Consensus        49 ~~~~~L~~L~l~~-n~l~~~-----~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~n~~~~~~~--  114 (183)
                      ...+.|++|.+++ +.++.-     ...+ ..++|++|++++|.++     .+...+...+.++.+++.++.+.+.+.  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3467889999987 446522     2222 5678899999999887     233445557889999999888876441  


Q ss_pred             -chhhhcCCCccEEeCC--CCCCc-----cCChhccccCcccEEeccCCcC
Q psy3781         115 -PEKLVKMQKLTVLDLS--NNNIR-----KIPYELGLAQQLHHLNLVGNCF  157 (183)
Q Consensus       115 -~~~~~~~~~L~~l~l~--~n~l~-----~~~~~~~~~~~L~~l~l~~n~~  157 (183)
                       ...+...+.++.+++.  +|.+.     .+...+..+++|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             2344556778776554  55665     3455567888899998877643