Psyllid ID: psy3785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MFQSQNSGKMRDSARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIMNDF
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHccccccHHHHcccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccHHHHHHHHccEEEcccccccHHHccHHHHHHHcccEEEccccccccccHHHHHcccccEEEccccccccccHHHHHHHcccEEEccccccccccHHHHHHccccEEEccccccccccHHHHHHccccEEEccccccccccHHHHHHccccEEEccccccccccc
Coil and Loop (DISEMBL)
mfqsqnsgkmrdsARLVSLVGSASASALLYTYEissdtgsgesnmsqsepvlKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVydlphlykfnvsnnMIAKISDNIGNLTSLLVLNIsnnkieslpenigymkslthidashntisyvpwklFSKFHQnrssrfgcaLIMNDF
Flexible Loop (DISEMBL)
mfqsqnsgkmrdsARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIMNDF
Low Complexity Region (SEG)
MFQSQNSGKMRDsarlvslvgsasasallYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHltnlnelalnnnqlEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIMNDF
Disordered region (IsUnstruct)
*******************V****ASALLYTYE*****************VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI****
Disordered Region (DISOPRED)
MFQSQNSGKMRDSARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIMN**
Disordered Region (DISEMBL)
*************ARLVSLVGSASASALLYTYEISS************EPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIMNDF
Disordered Region (DISPRO)
MFQSQNSGKMRDSARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQSQNSGKMRDSARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIMNDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q5M8G4	605	Leucine-rich repeat-conta	yes	N/A	0.570	0.173	0.420	5e-17
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	N/A	0.456	0.138	0.401	2e-16
Q9H9A6	602	Leucine-rich repeat-conta	yes	N/A	0.586	0.179	0.390	7e-14
A8JAM0	1159	Coiled-coil domain-contai	N/A	N/A	0.456	0.072	0.383	1e-13
Q4R3P6	602	Leucine-rich repeat-conta	N/A	N/A	0.472	0.144	0.381	1e-13
Q5RFE9	602	Leucine-rich repeat-conta	yes	N/A	0.472	0.144	0.381	1e-13
B0W6M9	628	Leucine-rich repeat prote	N/A	N/A	0.570	0.167	0.392	4e-13
Q6UWE0	723	E3 ubiquitin-protein liga	no	N/A	0.565	0.143	0.345	1e-12
Q54AX5	510	Leucine-rich repeat prote	yes	N/A	0.521	0.188	0.371	3e-12
Q80VQ1	524	Leucine-rich repeat-conta	yes	N/A	0.576	0.202	0.373	4e-12

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 70/107 (65%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ LN+ +N +K LP E++HL NL  L L +NQLE + +++  L  L + +VSNN +  I
Sbjct: 130 LQKLNISHNKIKQLPKELQHLQNLKSLLLQHNQLEELPDSIGHLSILEELDVSNNCLRSI 189

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           S ++G LT L+  N+S+NK+ +LP  IG MK+L  +D + N +  VP
Sbjct: 190 SSSVGQLTGLVKFNLSSNKLTALPTEIGKMKNLKQLDCTSNLLENVP 236

Xenopus tropicalis (taxid: 8364)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 70/107 (65%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ LN+ +N +K LP+E++HL NL    L +NQLE + +++  L  L + +VSNN +  +
Sbjct: 130 LQKLNISHNKIKQLPNELQHLQNLKSFLLQHNQLEELPDSIGHLSILEELDVSNNCLRSV 189

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           S ++G LT L+  N+S+NK+ +LP  IG MK+L  +D + N +  VP
Sbjct: 190 SSSVGQLTGLVKFNLSSNKLTALPTEIGKMKNLRQLDCTSNLLENVP 236

Xenopus laevis (taxid: 8355)

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 70/110 (63%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ LN+ +N LK LP+EI +L NL  L L +N+L  I+E    L +L   ++SNN +  +
Sbjct: 130 LQKLNVSHNKLKILPEEITNLRNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTV 189

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
             +  +L+SL+ LN+S+N+++SLP  I  MK L H+D + N +  +P +L
Sbjct: 190 PASFSSLSSLVRLNLSSNELKSLPAEINRMKRLKHLDCNSNLLETIPPEL 239

Homo sapiens (taxid: 9606)

>sp|A8JAM0|CC135_CHLRE Coiled-coil domain-containing protein lobo homolog (Fragment) OS=Chlamydomonas reinhardtii GN=FAP50 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 59/107 (55%)

Query: 57  LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDN 116
           L L  N+L  LPDE+     L  L L  NQL+ I   VY LP L  F+ S N I K+ D 
Sbjct: 57  LELSSNDLTDLPDELEEFRYLRILRLKYNQLKRIPAVVYRLPQLMVFDASGNRIQKVDDA 116

Query: 117 IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
           IG+L+ L  L++S N+I +LPE++  +  L  +   +N +  +P  L
Sbjct: 117 IGHLSLLKELDVSGNEITTLPESLSTLPKLEVLQVENNRLELLPESL 163

May play a role in the regulation of germ cells differentiation, particularly during meiosis and spermiogenesis (By similarity). May be involved in sperm motility.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 69/110 (62%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ LN+ +N LK  P+EI +L NL  L L +N+L  I+E    L +L   ++SNN +  +
Sbjct: 130 LQKLNVSHNKLKIFPEEITNLRNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNRLTTV 189

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
             +  +L+SL+ LN+S+N+++SLP  I  MK L H+D + N +  +P +L
Sbjct: 190 PASFSSLSSLVRLNLSSNQLKSLPAEINRMKRLKHLDCNSNLLETIPPEL 239

Macaca fascicularis (taxid: 9541)

>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 69/110 (62%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ LN+ +N LK LP+EI +L NL  L L +N+L  I+E      +L   ++SNN +  +
Sbjct: 130 LQKLNVSHNKLKILPEEITNLRNLKCLYLQHNELTCISEGFEQFSNLEDLDLSNNRLTTV 189

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
             +  +L+SL+ LN+S+N+++SLP  I  MK L H+D + N +  +P +L
Sbjct: 190 PASFSSLSSLVRLNLSSNELKSLPAEINRMKRLKHLDCNSNLLETIPPEL 239

Pongo abelii (taxid: 9601)

>sp|B0W6M9|SUR8_CULQU Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 65/107 (60%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           LK L L  N+L  LPD +++L  L  L L +N+L  I + +Y L  L    +  N I  +
Sbjct: 195 LKTLALNENSLTSLPDSLQNLKALKVLDLRHNKLSEIPDVIYKLHTLTTLYLRFNRIKVV 254

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            DN+ NL+SL +L++  NKI  LP  IG++++LT +D SHN + ++P
Sbjct: 255 GDNLKNLSSLTMLSLRENKIHELPAAIGHLRNLTTLDLSHNHLKHLP 301

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Culex quinquefasciatus (taxid: 7176)

>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 62/107 (57%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           +KVL+L  N L  LPD++  LT L  L +  NQL  +  ++ +L  L   NV +N + ++
Sbjct: 83  IKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKEL 142

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            D +G L SL  LNIS N+I+ LP+ + ++++L  +    + + Y P
Sbjct: 143 PDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSLDASAMVYPP 189

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) and exocytic (HIV-1 viral proteins) cargos.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54AX5|LRRA_DICDI Leucine-rich repeat protein lrrA OS=Dictyostelium discoideum GN=lrrA PE=1 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%)

Query: 66  GLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLV 125
            LP EI  +  L E   +NNQL+ I   + +L  L K N+S N +  I  + GNL+ L +
Sbjct: 355 ALPPEIASMKALKEFEASNNQLQAIPTEIGELSGLTKINLSGNKLTSIPASFGNLSELQI 414

Query: 126 LNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWK 162
            ++ +N+I  LP  +  +KS T ID SHN ++ +PW+
Sbjct: 415 CDLKSNEIAELPTTLDGLKSCTKIDLSHNMLTELPWE 451

Involved in cytoskeleton remodeling, which is needed for normal chemotactic aggregation and efficient cell sorting during multicellular morphogenesis.

Dictyostelium discoideum (taxid: 44689)

>sp|Q80VQ1|LRRC1_MOUSE Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 62/107 (57%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L  L L+ N L  LPD +  L  L EL L NN++  + E++  L HL    +  N ++++
Sbjct: 153 LASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSEL 212

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
              IGNL +LL L++S N++E LPE I  + SLT++  S N +  +P
Sbjct: 213 PQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTYLVISQNLLETIP 259

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
443689982	481	hypothetical protein CAPTEDRAFT_174612,	0.663	0.253	0.408	1e-16
58332470	605	leucine-rich repeat-containing protein 4	0.570	0.173	0.420	2e-15
421097204	671	leucine rich repeat protein [Leptospira	0.597	0.163	0.418	7e-15
124010200	356	leucine-rich repeat containing protein [	0.586	0.303	0.425	8e-15
148230653	605	leucine-rich repeat-containing protein 4	0.456	0.138	0.401	1e-14
281207071	208	leucine-rich repeat-containing protein [	0.586	0.519	0.412	1e-13
443724553	616	hypothetical protein CAPTEDRAFT_214841 [	0.646	0.193	0.379	1e-13
186686533	1124	hypothetical protein Npun_R6524 [Nostoc	0.586	0.096	0.379	1e-13
209156068	447	Leucine-rich repeat-containing protein 4	0.576	0.237	0.420	2e-13
197632025	600	leucine rich repeat containing 40 [Salmo	0.576	0.176	0.420	2e-13

>gi|443689982|gb|ELT92244.1| hypothetical protein CAPTEDRAFT_174612, partial [Capitella teleta]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 3/125 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +LKV+N+  N +K LPD +  L+ L E+ L+ NQLE +  +   L  L +  +S+N++A 
Sbjct: 104 QLKVMNIVGNRVKSLPDSVSELSALEEIYLDENQLEGLPSSFVQLTCLQRLEISDNILAH 163

Query: 113 ISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171
           +  +IGNL+ L VLN+S NK+E SLPE+ G + S+  ID SHN +S +P K   +F+Q+ 
Sbjct: 164 LPKDIGNLSKLRVLNVSGNKLEGSLPESFGDISSVCEIDLSHNQLSELPPK--CRFNQSL 221

Query: 172 SSRFG 176
              F 
Sbjct: 222 VKLFA 226

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|58332470|ref|NP_001011310.1| leucine-rich repeat-containing protein 40 [Xenopus (Silurana) tropicalis] gi|82232111|sp|Q5M8G4.1|LRC40_XENTR RecName: Full=Leucine-rich repeat-containing protein 40 gi|56789102|gb|AAH88034.1| hypothetical LOC496765 [Xenopus (Silurana) tropicalis]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 70/107 (65%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ LN+ +N +K LP E++HL NL  L L +NQLE + +++  L  L + +VSNN +  I
Sbjct: 130 LQKLNISHNKIKQLPKELQHLQNLKSLLLQHNQLEELPDSIGHLSILEELDVSNNCLRSI 189

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           S ++G LT L+  N+S+NK+ +LP  IG MK+L  +D + N +  VP
Sbjct: 190 SSSVGQLTGLVKFNLSSNKLTALPTEIGKMKNLKQLDCTSNLLENVP 236

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|421097204|ref|ZP_15557898.1| leucine rich repeat protein [Leptospira borgpetersenii str. 200901122] gi|410799695|gb|EKS01761.1| leucine rich repeat protein [Leptospira borgpetersenii str. 200901122]

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 74/110 (67%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ LNLQYN LK LP+EI  L NL EL L++N+LE + + +  L +L K ++S+N +  +
Sbjct: 323 LRTLNLQYNPLKTLPEEIGKLQNLPELDLSHNKLEALPKEIGQLQNLPKLDLSHNQLQAL 382

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
              IG L +L  L++ NN++E+LPE IG +++L  +D SHN +  +P ++
Sbjct: 383 PKEIGQLQNLRELHLYNNQLETLPEEIGKLQNLQILDLSHNKLEALPKEI 432

Source: Leptospira borgpetersenii str. 200901122

Species: Leptospira borgpetersenii

Genus: Leptospira

Family: Leptospiraceae

Order: Spirochaetales

Class: Spirochaetia

Phylum: Spirochaetes

Superkingdom: Bacteria

>gi|124010200|ref|ZP_01694856.1| leucine-rich repeat containing protein [Microscilla marina ATCC 23134] gi|123983744|gb|EAY24171.1| leucine-rich repeat containing protein [Microscilla marina ATCC 23134]

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L+ L+L YNNLKGLPDEI+ LTNL  L L NNQL  +   +  L  L K  + +N + K
Sbjct: 211 ELESLHLGYNNLKGLPDEIQQLTNLGWLYLENNQLTALPAGIGGLKKLKKMGLQDNRLRK 270

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           +   IG L +L  LN+ NN++  LPE I  + SL   D  +N +  +P
Sbjct: 271 LPKEIGQLGNLQELNLKNNRLRRLPEEIDQLTSLREFDLENNRLRNLP 318

Source: Microscilla marina ATCC 23134

Species: Microscilla marina

Genus: Microscilla

Family: Cytophagaceae

Order: Cytophagales

Class: Cytophagia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|148230653|ref|NP_001085672.1| leucine-rich repeat-containing protein 40 [Xenopus laevis] gi|82236544|sp|Q6GPJ5.1|LRC40_XENLA RecName: Full=Leucine-rich repeat-containing protein 40 gi|49257387|gb|AAH73124.1| MGC84527 protein [Xenopus laevis]

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 70/107 (65%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ LN+ +N +K LP+E++HL NL    L +NQLE + +++  L  L + +VSNN +  +
Sbjct: 130 LQKLNISHNKIKQLPNELQHLQNLKSFLLQHNQLEELPDSIGHLSILEELDVSNNCLRSV 189

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           S ++G LT L+  N+S+NK+ +LP  IG MK+L  +D + N +  VP
Sbjct: 190 SSSVGQLTGLVKFNLSSNKLTALPTEIGKMKNLRQLDCTSNLLENVP 236

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281207071|gb|EFA81255.1| leucine-rich repeat-containing protein [Polysphondylium pallidum PN500]

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 65/109 (59%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           LK L+L  N L  LP EI  LT+L EL   NNQL  I   + +L  L K N S N +  I
Sbjct: 39  LKKLSLSGNRLVALPAEICTLTSLKELECANNQLLQIPGEIGNLTGLTKVNFSANKLTAI 98

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWK 162
             + GN + L ++++ +N+I  LP  +G +KS+T ID SHN ++ +PW+
Sbjct: 99  PASFGNFSELQIMDVKSNEIAELPNTLGGLKSITKIDLSHNMLTELPWE 147

Source: Polysphondylium pallidum PN500

Species: Polysphondylium pallidum

Genus: Polysphondylium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|443724553|gb|ELU12513.1| hypothetical protein CAPTEDRAFT_214841 [Capitella teleta]

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 76/124 (61%), Gaps = 5/124 (4%)

Query: 45  MSQSEPVLKLKV-----LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPH 99
           +S   P L L++     +NL YN ++ LPD I  + +L  L LNNNQL+ +  ++  L  
Sbjct: 70  ISDVPPELPLRLPHLSYINLSYNQIEELPDSIGLMFHLKTLLLNNNQLQSLPPSIAQLEQ 129

Query: 100 LYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYV 159
           L K +VS+NM+ ++   +GN+  L  LNIS+NK+++LP+++G   S+  I ASHN +   
Sbjct: 130 LVKLDVSHNMLKELPAELGNMQVLAKLNISHNKLKTLPKSLGKSHSIETILASHNRLEDP 189

Query: 160 PWKL 163
           P +L
Sbjct: 190 PQRL 193

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|186686533|ref|YP_001869729.1| hypothetical protein Npun_R6524 [Nostoc punctiforme PCC 73102] gi|186468985|gb|ACC84786.1| leucine-rich repeat protein [Nostoc punctiforme PCC 73102]

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 63/108 (58%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L+ L+L  N L  LP+ I  L  L  L L+NNQL  + EA+  L  L + N+ NN + +
Sbjct: 67  QLQTLDLSNNKLTQLPEAIASLARLQRLDLSNNQLTELPEAIASLAQLQELNLRNNQLTE 126

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           + + I +LT L  L++SNN++  LPE I  +  L   D SHN ++ +P
Sbjct: 127 LPEAIASLTRLQRLDLSNNQLTELPEAIASLTQLQSFDLSHNELTELP 174

Source: Nostoc punctiforme PCC 73102

Species: Nostoc punctiforme

Genus: Nostoc

Family: Nostocaceae

Order: Nostocales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|209156068|gb|ACI34266.1| Leucine-rich repeat-containing protein 40 [Salmo salar]

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 67/107 (62%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ L+L +N LK LP E+  L NL  L L  N LE + E V  L +L   ++SNN +  +
Sbjct: 129 LQKLSLSHNKLKELPKEVWSLKNLTCLQLQQNLLEHLPEGVGLLTNLDDIDLSNNQLTAV 188

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            D++GNL  L+ LN+S+NK++SLP  I  MK+L  +D +HN +  +P
Sbjct: 189 PDSLGNLNHLVKLNLSHNKLKSLPSGISVMKNLRLLDCTHNQLESIP 235

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|197632025|gb|ACH70736.1| leucine rich repeat containing 40 [Salmo salar]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 67/107 (62%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ L+L +N LK LP E+  L NL  L L  N LE + E V  L +L   ++SNN +  +
Sbjct: 129 LQKLSLSHNKLKELPKEVWSLKNLTCLQLQQNLLEHLPEGVGLLTNLDDIDLSNNQLTAV 188

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            D++GNL  L+ LN+S+NK++SLP  I  MK+L  +D +HN +  +P
Sbjct: 189 PDSLGNLNHLVKLNLSHNKLKSLPSGISVMKNLRLLDCTHNQLESIP 235

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
DICTYBASE|DDB_G0294094	510	lrrA "leucine-rich repeat-cont	0.635	0.229	0.316	1.2e-10
TAIR|locus:2142773	262	AT5G07910 "AT5G07910" [Arabido	0.364	0.255	0.402	8e-10
RGD|1308146	582	Shoc2 "soc-2 (suppressor of cl	0.586	0.185	0.268	8.3e-10
MGI|MGI:1920564	347	Lrrc69 "leucine rich repeat co	0.668	0.354	0.282	8.6e-10
TAIR|locus:2088807	471	PIRL2 "AT3G26500" [Arabidopsis	0.711	0.278	0.282	9.7e-10
UNIPROTKB|A8JAM0	1159	FAP50 "Coiled-coil domain-cont	0.581	0.092	0.289	1.3e-09
MGI|MGI:1927197	582	Shoc2 "soc-2 (suppressor of cl	0.586	0.185	0.259	1.4e-09
DICTYBASE|DDB_G0278509	1248	DDB_G0278509 "MLK family prote	0.586	0.086	0.311	1.4e-09
MGI|MGI:1914394	602	Lrrc40 "leucine rich repeat co	0.581	0.177	0.336	2.4e-09
UNIPROTKB|F1NRN7	529	SHOC2 "Leucine-rich repeat pro	0.586	0.204	0.259	2.5e-09

DICTYBASE|DDB_G0294094 lrrA "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 158 (60.7 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 37/117 (31%), Positives = 58/117 (49%)

Query:    46 SQSEPVLKLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNV 105
             S+   ++ LK L L  N L  LP EI                + I   + +L  L K N+
Sbjct:   335 SEIGKLVNLKKLLLSNNLLIALPPEIASMKALKEFEASNNQLQAIPTEIGELSGLTKINL 394

Query:   106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWK 162
             S N +  I  + GNL+ L + ++ +N+I  LP  +  +KS T ID SHN ++ +PW+
Sbjct:   395 SGNKLTSIPASFGNLSELQICDLKSNEIAELPTTLDGLKSCTKIDLSHNMLTELPWE 451

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0043326 "chemotaxis to folate" evidence=IMP

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2142773 AT5G07910 "AT5G07910" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 27/67 (40%), Positives = 45/67 (67%)

Query:    97 LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTI 156
             L  L + ++S NM+  + D IG+L +LL+LN+SNN+++SLPE++G   SL  + A+ N +
Sbjct:   113 LVRLEQLSISRNMLIYLPDTIGSLRNLLLLNVSNNRLKSLPESVGSCASLEEVQANDNVV 172

Query:   157 SYVPWKL 163
               +P  L
Sbjct:   173 EELPASL 179

GO:0005886 "plasma membrane" evidence=IDA

RGD|1308146 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 29/108 (26%), Positives = 58/108 (53%)

Query:    53 KLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIAK 112
             KL++L+L++N L+ +P  +                  + + V +LP L   ++  N I +
Sbjct:   170 KLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITAVEKDVRNLPRLSTLSIRENKIKQ 229

Query:   113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
             +   IG L +L+ L++++N++E LP+ IG    +T++D  HN +  +P
Sbjct:   230 LPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLP 277

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISO;ISS

MGI|MGI:1920564 Lrrc69 "leucine rich repeat containing 69" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 35/124 (28%), Positives = 66/124 (53%)

Query:    46 SQSEPVLKLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNV 105
             S  E +  LK L+LQ N++  +  E+R               + + E +  L  L   ++
Sbjct:    31 STLEKLPNLKTLDLQNNSISKVCPELRTLTQLTLLNLGNNHLQEVPEEIKYLTSLKNLHL 90

Query:   106 SNNMIAKISDNIGN-LTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
               N I +I+  + N L  L++LN+++N++ SLP+ IG ++SLT++  + N ++ +P +L 
Sbjct:    91 FGNRICRIAPGVFNGLHRLIMLNLNDNRLTSLPQEIGRLRSLTYLSLNRNNLTVIPKELC 150

Query:   165 SKFH 168
             S  H
Sbjct:   151 SLEH 154

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088807 PIRL2 "AT3G26500" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 39/138 (28%), Positives = 70/138 (50%)

Query:    30 YTYEISSDTGSGESNMSQSEPVLK-------LKVLNLQYNNLKGLPDEIRHXXXXXXXXX 82
             Y+ E+ S   SGE    +   VLK       ++ ++L    LK +P+             
Sbjct:   131 YSTEVESMLRSGEEVNEKVLAVLKEAESGGTVERIDLSSQELKLIPEAFWKVVGLVYLNL 190

Query:    83 XXXXXEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY 142
                    I +A+  L  L + +VS+N +  + D+IG L +L +LN++ N + +LPE+I +
Sbjct:   191 SGNDLTFIPDAISKLKKLEELDVSSNSLESLPDSIGMLLNLRILNVNANNLTALPESIAH 250

Query:   143 MKSLTHIDASHNTISYVP 160
              +SL  +DAS+N ++ +P
Sbjct:   251 CRSLVELDASYNNLTSLP 268

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A8JAM0 FAP50 "Coiled-coil domain-containing protein lobo homolog" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 153 (58.9 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 31/107 (28%), Positives = 57/107 (53%)

Query:    54 LKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIAKI 113
             L++L L+YN LK +P  +                + +++A+  L  L + +VS N I  +
Sbjct:    77 LRILRLKYNQLKRIPAVVYRLPQLMVFDASGNRIQKVDDAIGHLSLLKELDVSGNEITTL 136

Query:   114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
              +++  L  L VL + NN++E LPE++G +  +  +D S N + Y+P
Sbjct:   137 PESLSTLPKLEVLQVENNRLELLPESLGELPGVIKMDLSTNNLRYLP 183

GO:0031514 "motile cilium" evidence=IDA

MGI|MGI:1927197 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/108 (25%), Positives = 58/108 (53%)

Query:    53 KLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIAK 112
             KL++L+L++N L+ +P  +                  + + + +LP L   ++  N I +
Sbjct:   170 KLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLPKLSMLSIRENKIKQ 229

Query:   113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
             +   IG L +L+ L++++N++E LP+ IG    +T++D  HN +  +P
Sbjct:   230 LPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNDLLDLP 277

GO:0000164 "protein phosphatase type 1 complex" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISO

DICTYBASE|DDB_G0278509 DDB_G0278509 "MLK family protein kinase DDB_G0278509" [Dictyostelium discoideum (taxid:44689)]

 Score = 153 (58.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 34/109 (31%), Positives = 58/109 (53%)

Query:    53 KLKVLNLQYNNLKGLPDEI-RHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIA 111
             KL  L++ YN +  LPD++                 + +  A+ +L  L + N SNN+I 
Sbjct:   595 KLHSLSIDYNQISVLPDKVVASLSRLAKLTISNNKIKQLPFAINNLSSLIELNASNNVIE 654

Query:   112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
              + D+I  L++L  LN++NN ++ LP NIG++  L  +   +N IS +P
Sbjct:   655 LLPDSICYLSNLKKLNLNNNNLKELPSNIGFLTKLVDLQLYNNQISSLP 703

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1914394 Lrrc40 "leucine rich repeat containing 40" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 36/107 (33%), Positives = 55/107 (51%)

Query:    54 LKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIAKI 113
             L+ LN+ +N LK LP+EI                  I E    L  L   ++S+N +A +
Sbjct:   130 LQKLNVSHNKLKILPEEITSLKNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATV 189

Query:   114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
               +   L+SLL LN+S+N++++LP  I  MK L H+D   N +  VP
Sbjct:   190 PADFALLSSLLRLNLSSNQLKNLPAEISRMKRLKHLDCDANLLETVP 236

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NRN7 SHOC2 "Leucine-rich repeat protein SHOC-2" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 28/108 (25%), Positives = 57/108 (52%)

Query:    53 KLKVLNLQYNNLKGLPDEIRHXXXXXXXXXXXXXXEMINEAVYDLPHLYKFNVSNNMIAK 112
             KL++L+L++N L+ +P  +                  + + + +L  L   ++  N I +
Sbjct:   170 KLRMLDLRHNKLREIPSVVYRLTSLATLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQ 229

Query:   113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
             +   IG L +L+ L++++N++E LPE IG    +T++D  HN +  +P
Sbjct:   230 LPAEIGELCNLITLDVAHNQLEHLPEEIGSCTQITNLDLQHNELLDLP 277

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	184
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 63.1 bits (153), Expect = 5e-12
 Identities = 41/108 (37%), Positives = 68/108 (62%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            LK L+L +N+L  LP  + +L+NLN L L+ N++  +   +  L  L + ++SNN I +
Sbjct: 164 NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE 223

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           +  ++ NL +L  L +SNNK+E LPE+IG + +L  +D S+N IS + 
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 33/102 (32%), Positives = 60/102 (58%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            LK L+L  N ++ LP  +R+L NL  L L+ N L  + + + +L +L   ++S N I+ 
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD 200

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
           +   I  L++L  L++SNN I  L  ++  +K+L+ ++ S+N
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 1/145 (0%)

Query: 13  SARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIR 72
            + + SL GS +   LL    +  +     SN+S+   +  L  L+L  NN+  +P  I 
Sbjct: 77  PSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG 136

Query: 73  HLT-NLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNN 131
            L  NL EL L++N++E +   + +LP+L   ++S N ++ +   + NL++L  L++S N
Sbjct: 137 LLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196

Query: 132 KIESLPENIGYMKSLTHIDASHNTI 156
           KI  LP  I  + +L  +D S+N+I
Sbjct: 197 KISDLPPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 80  LALNNNQLE-MINEAVYDLPHLYKFNVSNNMI-AKISDNIGNLTSLLVLNISNNKIE-SL 136
           L L+N  L   I   +  L HL   N+S N I   I  ++G++TSL VL++S N    S+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 137 PENIGYMKSLTHIDASHNTIS 157
           PE++G + SL  ++ + N++S
Sbjct: 483 PESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
            LK L+L  N L  +PD   + L NL  L L+ N L  I+ EA   LP L   ++S N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 24/106 (22%)

Query: 54  LKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           LK + L YNNL G +P EI  LT+LN L L                      V NN+   
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDL----------------------VYNNLTGP 251

Query: 113 ISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
           I  ++GNL +L  L +  NK+   +P +I  ++ L  +D S N++S
Sbjct: 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 21/127 (16%)

Query: 53  KLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEMIN-----EAVYDLPHLYK 102
            LK LNL  N +       L + ++   NL  L LNNN L         E +  L  L  
Sbjct: 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225

Query: 103 FNVSNNMI-----AKISD-NIGNLTSLLVLNISNNKIE-----SLPENIGYMKSLTHIDA 151
            N+ +N +     A ++   +    SLL L++S N I       L E +   +SL  +D 
Sbjct: 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285

Query: 152 SHNTISY 158
             N    
Sbjct: 286 RGNKFGE 292

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 99  HLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHN 154
           +L   ++SNN +  I D     L +L VL++S N + S+       + SL  +D S N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 57  LNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMIA-KI 113
           L L  N L G +PDE+     L  L L++NQL   I  +  ++P L + ++S N ++ +I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 114 SDNIGNLTSLLVLNISNNKIE-SLP 137
             N+GN+ SL+ +NIS+N +  SLP
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 8/113 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           ++  L L  N LK LP+ ++   N+  L  N+NQL  I   + D   + +  +S N I +
Sbjct: 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDT--IQEMELSINRITE 255

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
           + + +   ++L  L++ +NKI  LPEN+   + L ++    N+I  +P  L S
Sbjct: 256 LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS 304

Length = 754

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 30/155 (19%)

Query: 28  LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQ 86
           L+Y  +IS++   G  N  + + +  L++L+L  N   G LPD       L  L L+ NQ
Sbjct: 429 LVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQ 486

Query: 87  L-EMINEAVYDLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE---------- 134
               +   +  L  L +  +S N ++ +I D + +   L+ L++S+N++           
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 135 ---------------SLPENIGYMKSLTHIDASHN 154
                           +P+N+G ++SL  ++ SHN
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 31/133 (23%)

Query: 54  LKVLNLQYNNLKG-LPDEIRHLT-NLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
           ++ +NL  N L G +PD+I   + +L  L L+NN     I      +P+L   ++SNNM+
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNML 152

Query: 111 A-------------------------KISDNIGNLTSLLVLNISNNK-IESLPENIGYMK 144
           +                         KI +++ NLTSL  L +++N+ +  +P  +G MK
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212

Query: 145 SLTHIDASHNTIS 157
           SL  I   +N +S
Sbjct: 213 SLKWIYLGYNNLS 225

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNV-SNNM 109
            L+ L L  N L G +P  I  L  L  L L++N L   I E V  L +L   ++ SNN 
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Query: 110 IAKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
             KI   + +L  L VL + +NK    +P+N+G   +LT +D S N ++
Sbjct: 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.8 bits (81), Expect = 0.001
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 98  PHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPE 138
            +L   ++SNN I  +   + NL +L  L++S NKI  L  
Sbjct: 1   TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.4 bits (80), Expect = 0.002
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE 92
           L+ L+L  N +  LP  + +L NL  L L+ N++  ++ 
Sbjct: 2  NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 27/131 (20%)

Query: 54  LKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLY---------- 101
           L+ + LQ N+  G LP E   L  +  L ++NN L+  IN   +D+P L           
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 102 -------------KFNVSNNMIAK-ISDNIGNLTSLLVLNISNNKIES-LPENIGYMKSL 146
                          ++S N  +  +   +G+L+ L+ L +S NK+   +P+ +   K L
Sbjct: 466 GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525

Query: 147 THIDASHNTIS 157
             +D SHN +S
Sbjct: 526 VSLDLSHNQLS 536

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 10/122 (8%)

Query: 54  LKVLNLQYNNLKGLPDEIRHL-TNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           L+ L++  N+++ LP    HL + +  L + +N L  + E +   P L       N +  
Sbjct: 285 LRYLSVYDNSIRTLPA---HLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS 339

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
           +  ++     L VL++S N+I  LPE +    ++T +D S N ++ +P  L +     ++
Sbjct: 340 LPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLPAALQIMQA 395

Query: 173 SR 174
           SR
Sbjct: 396 SR 397

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
KOG0617|consensus	264		99.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.69
KOG0617|consensus	264		99.64
KOG4194|consensus	873		99.62
KOG0444|consensus	1255		99.62
KOG0444|consensus	1255		99.6
KOG4194|consensus	873		99.54
KOG0472|consensus	565		99.51
KOG0472|consensus	565		99.45
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.32
KOG0618|consensus	1081		99.29
KOG0618|consensus	1081		99.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.28
KOG4237|consensus	498		99.23
KOG0532|consensus	722		99.23
KOG1259|consensus	490		99.22
KOG0532|consensus	722		99.2
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.13
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.11
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
PLN03150	623	hypothetical protein; Provisional	98.99
PLN03150	623	hypothetical protein; Provisional	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG1259|consensus	490		98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
KOG4579|consensus	177		98.8
KOG1909|consensus	382		98.79
KOG3207|consensus	505		98.75
KOG4237|consensus	498		98.7
KOG1859|consensus	1096		98.69
KOG3207|consensus	505		98.65
KOG4579|consensus	177		98.62
KOG1859|consensus	1096		98.59
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.43
KOG0531|consensus	414		98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.37
KOG3665|consensus	699		98.28
KOG1644|consensus	233		98.27
KOG4658|consensus	889		98.23
KOG4658|consensus	889		98.23
KOG1909|consensus	382		98.22
KOG0531|consensus	414		98.21
KOG1644|consensus	233		98.19
KOG2982|consensus	418		98.19
KOG3665|consensus	699		98.03
KOG2120|consensus	419		97.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.89
PRK15386	426	type III secretion protein GogB; Provisional	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.73
KOG2739|consensus	260		97.71
KOG2120|consensus	419		97.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.4
KOG2982|consensus	418		97.35
KOG2739|consensus	260		97.33
KOG2123|consensus	388		97.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.58
KOG2123|consensus	388		96.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.45
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.99
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.61
smart00370	26	LRR Leucine-rich repeats, outliers.	95.56
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.56
KOG0473|consensus	326		94.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.37
smart00370	26	LRR Leucine-rich repeats, outliers.	94.37
KOG0473|consensus	326		93.5
KOG4308|consensus	478		92.07
KOG4308|consensus	478		91.64
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.67
KOG1947|consensus	482		87.57
KOG1947|consensus	482		85.39
KOG3864|consensus	221		82.86
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.23
KOG3864|consensus	221		81.1
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.42

>KOG0617|consensus

Probab=99.75  E-value=1.4e-20  Score=129.81  Aligned_cols=150  Identities=22%  Similarity=0.351  Sum_probs=135.9

Q ss_pred             ccccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccc--cch
Q psy3785          14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE--MIN   91 (184)
Q Consensus        14 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~--~~~   91 (184)
                      +.+..+++.++.+.+|+.|++.+|++.  .+|.++.++++|+.|.+.-|++..+|.+|+.++.|+.|++++|++.  .+|
T Consensus        43 NKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lp  120 (264)
T KOG0617|consen   43 NKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLP  120 (264)
T ss_pred             CceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCC
Confidence            344557788888999999999999887  7899999999999999999999999999999999999999999988  688


Q ss_pred             hhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhh
Q psy3785          92 EAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS  165 (184)
Q Consensus        92 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~  165 (184)
                      ..|+.|..|+.|.+++|.+..+|+..+.+.+|+.+.+.+|.+-++|.+++.++.|+.+.+.+|.++.+|.++..
T Consensus       121 gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  121 GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence            88889999999999999999999999999999999999999999999999999999999999999999987664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=1e-16  Score=140.08  Aligned_cols=136  Identities=24%  Similarity=0.350  Sum_probs=59.1

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhcCCCC
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPH   99 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~   99 (184)
                      .++.+++|+.|++++|.+.+ .+|..+.++++|+.|++++|.+.+ +|..+.++++|+.|++++|.++ .+|..+..+++
T Consensus       159 ~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  237 (968)
T PLN00113        159 DIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS  237 (968)
T ss_pred             HHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence            34444444444444444433 334444444444444444444443 3444444444444444444443 33444444444


Q ss_pred             ceEEEccccccc-cchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC
Q psy3785         100 LYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       100 l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      |++|++++|.++ .+|..++++++|+.+++++|.+. .+|..+..+++|+.+++++|.+.+
T Consensus       238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            444444444443 23334444444444444444443 233333444444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.69  E-value=1.9e-16  Score=138.48  Aligned_cols=157  Identities=25%  Similarity=0.317  Sum_probs=95.2

Q ss_pred             ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc
Q psy3785          18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY   95 (184)
Q Consensus        18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~   95 (184)
                      .++..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+.
T Consensus       179 ~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        179 KIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             cCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            455566677777777777777655 556666777777777777777664 5666666777777777777665 4555666


Q ss_pred             CCCCceEEEccccccc-cchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC-CcHHHhhhhhcccc
Q psy3785          96 DLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY-VPWKLFSKFHQNRS  172 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~~  172 (184)
                      .+++|+.|++++|.++ .+|..+.+++.|+.+++++|.+. .+|..+..+++|+.+++++|.+++ +|. .+..++.|+.
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~  336 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQV  336 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCE
Confidence            6666666666666655 34555556666666666666555 444445555555555555555554 322 2233444444


Q ss_pred             cccc
Q psy3785         173 SRFG  176 (184)
Q Consensus       173 ~~~~  176 (184)
                      +.+.
T Consensus       337 L~L~  340 (968)
T PLN00113        337 LQLW  340 (968)
T ss_pred             EECc
Confidence            4443

>KOG0617|consensus

Probab=99.64  E-value=5.8e-18  Score=116.98  Aligned_cols=153  Identities=20%  Similarity=0.301  Sum_probs=135.2

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK  102 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  102 (184)
                      +..+..+..|.+++|...  .+|+.+..+.+|+.|.+.+|++.++|..+..+++|+.|++.-|++.-+|.+|+.++-|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            346778888999999987  789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccccc--cchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccc
Q psy3785         103 FNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCA  178 (184)
Q Consensus       103 L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~  178 (184)
                      |++..|.+.  .+|..|..+.+|+.+.+++|.+.-+|..++.+++|+.+.+.+|.+-.+|.++.. +..++-+-+.++
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~-lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGD-LTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHH-HHHHHHHhcccc
Confidence            999999987  568888889999999999999999999999999999999999999999998754 344444434333

>KOG4194|consensus

Probab=99.62  E-value=6.2e-17  Score=129.60  Aligned_cols=142  Identities=24%  Similarity=0.356  Sum_probs=80.8

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccch-hhhcCCCCceE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYK  102 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~  102 (184)
                      ++..|+.|++++|.+.. .-++.....++|++|+++.|.++.+++ .|..+..|++|.++.|+++.+. ..+..+.+|++
T Consensus       291 gLt~L~~L~lS~NaI~r-ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~  369 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQR-IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK  369 (873)
T ss_pred             ccchhhhhccchhhhhe-eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence            45555555555555543 224444445556666666666665532 3555555666666666666554 23335666666


Q ss_pred             EEccccccccc----hhhhcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhh
Q psy3785         103 FNVSNNMIAKI----SDNIGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKF  167 (184)
Q Consensus       103 L~l~~n~~~~~----~~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~  167 (184)
                      |+++.|.++..    ...+.+++.|+.|.+.+|.++.+| +.+.+++.|++++|.+|.|.++....|+.+
T Consensus       370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            66666665522    224555666666666666666665 345566666666666666666666666555

>KOG0444|consensus

Probab=99.62  E-value=1.2e-16  Score=129.25  Aligned_cols=159  Identities=24%  Similarity=0.371  Sum_probs=142.5

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK  102 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  102 (184)
                      .+-++-++.+|+++|.+.+...|..+..++.+++|.+...++..+|+.++.+.+|+.|.+++|++..+...+..++.|+.
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS   82 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence            34577889999999999988899999999999999999999999999999999999999999999988888888999999


Q ss_pred             EEccccccc--cchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         103 FNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       103 L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      +.+..|++.  .+|+.+..+..|+.+++++|.++++|..+...+++-.++||+|+|..||..+|--+.-|-++.++.|++
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            999999876  778888899999999999999999999999999999999999999999999888777777788777765


Q ss_pred             c
Q psy3785         181 M  181 (184)
Q Consensus       181 ~  181 (184)
                      .
T Consensus       163 e  163 (1255)
T KOG0444|consen  163 E  163 (1255)
T ss_pred             h
Confidence            3

>KOG0444|consensus

Probab=99.60  E-value=1.3e-16  Score=128.99  Aligned_cols=165  Identities=24%  Similarity=0.365  Sum_probs=116.8

Q ss_pred             ccccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh
Q psy3785          14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA   93 (184)
Q Consensus        14 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~   93 (184)
                      +++.++.+.++.++.|+.+++.+|+.....+|+.+..+..|+.|+++.|++.++|..+..-+...+|++++|+|..+|..
T Consensus        65 N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~  144 (1255)
T KOG0444|consen   65 NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNS  144 (1255)
T ss_pred             hhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCch
Confidence            45566777777888888888888887777788888888888888888888888888888778888888888888888865


Q ss_pred             hc-CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCC--------------------------CcchhhhcCCCC
Q psy3785          94 VY-DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIE--------------------------SLPENIGYMKSL  146 (184)
Q Consensus        94 ~~-~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~--------------------------~l~~~~~~~~~L  146 (184)
                      ++ ++..|-+|++++|++..+|+..+.+..|+.|.+++|.+.                          .+|..+..+.+|
T Consensus       145 lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL  224 (1255)
T KOG0444|consen  145 LFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNL  224 (1255)
T ss_pred             HHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhh
Confidence            44 677777888888888777776666666666666666531                          234444555666


Q ss_pred             CEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785         147 THIDASHNTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       147 ~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      +.+|+|.|.+..+|..++ .+..|+.+.++.|.
T Consensus       225 ~dvDlS~N~Lp~vPecly-~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  225 RDVDLSENNLPIVPECLY-KLRNLRRLNLSGNK  256 (1255)
T ss_pred             hhccccccCCCcchHHHh-hhhhhheeccCcCc
Confidence            677777777777666443 34444444444443

>KOG4194|consensus

Probab=99.54  E-value=3.2e-15  Score=119.97  Aligned_cols=157  Identities=22%  Similarity=0.321  Sum_probs=96.1

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccch-hhhcCCCCc
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMIN-EAVYDLPHL  100 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l  100 (184)
                      +.+-.++++|+++.|.++. .....+.++.+|..|.++.|.++.+|.. |..+++|+.|++..|++..+. -.|..++++
T Consensus       169 fp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl  247 (873)
T KOG4194|consen  169 FPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL  247 (873)
T ss_pred             CCCCCCceEEeeccccccc-cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence            3344566667777666664 3345555666677777777777776654 344667777777666665332 122234444


Q ss_pred             eE------------------------EEccccccccch-hhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCC
Q psy3785         101 YK------------------------FNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHN  154 (184)
Q Consensus       101 ~~------------------------L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n  154 (184)
                      +.                        |+++.|+++.+. .++.++..|+.|++++|.|..+ ++.|..+++|..++|+.|
T Consensus       248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence            44                        444444444332 2344556666666666666644 355677777888888888


Q ss_pred             CCCCCcHHHhhhhhcccccccccccc
Q psy3785         155 TISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       155 ~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      +|+.++..-+..+.+|+.+.++.|.+
T Consensus       328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  328 RITRLDEGSFRVLSQLEELNLSHNSI  353 (873)
T ss_pred             ccccCChhHHHHHHHhhhhcccccch
Confidence            88887777777777777777777665

>KOG0472|consensus

Probab=99.51  E-value=2e-16  Score=121.78  Aligned_cols=157  Identities=25%  Similarity=0.346  Sum_probs=101.5

Q ss_pred             cccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcC
Q psy3785          17 VSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD   96 (184)
Q Consensus        17 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~   96 (184)
                      .+.|+++..+.++..+++.+|...  .+|+..-.+..|+.++...|-+..+|+.++.+.+|..|++..|.+..+| .|..
T Consensus       150 ~slp~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~g  226 (565)
T KOG0472|consen  150 SSLPEDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPG  226 (565)
T ss_pred             ccCchHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCc
Confidence            334444444455555555555444  2333333355555556555556566666666666666666666666665 4555


Q ss_pred             CCCceEEEccccccccchhh-hcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785          97 LPHLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus        97 l~~l~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      +..|..++.+.|++..+|.+ .++++.+..+|+.+|+++++|.++--+++|..+|+++|.|+++|.+....  -++++.+
T Consensus       227 cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl--hL~~L~l  304 (565)
T KOG0472|consen  227 CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL--HLKFLAL  304 (565)
T ss_pred             cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc--eeeehhh
Confidence            66666677777776666654 34888889999999999999988888888999999999999988766543  3444444


Q ss_pred             ccc
Q psy3785         176 GCA  178 (184)
Q Consensus       176 ~~~  178 (184)
                      .+|
T Consensus       305 eGN  307 (565)
T KOG0472|consen  305 EGN  307 (565)
T ss_pred             cCC
Confidence            333

>KOG0472|consensus

Probab=99.45  E-value=4.8e-15  Score=114.29  Aligned_cols=144  Identities=28%  Similarity=0.423  Sum_probs=119.4

Q ss_pred             ccccccCCCcCccccE-EEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhh
Q psy3785          16 LVSLVGSASASALLYT-YEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV   94 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~-l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~   94 (184)
                      +..+|..+..+..+.. +++++|.+.  -+|..+..+++++.|++++|.+.++|..++.+..|++++++.|++..+|..+
T Consensus       400 L~elPk~L~~lkelvT~l~lsnn~is--fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~  477 (565)
T KOG0472|consen  400 LCELPKRLVELKELVTDLVLSNNKIS--FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECL  477 (565)
T ss_pred             HhhhhhhhHHHHHHHHHHHhhcCccc--cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHH
Confidence            3444444444444433 344444443  4678888899999999999999999999999999999999999999999887


Q ss_pred             cCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHH
Q psy3785          95 YDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWK  162 (184)
Q Consensus        95 ~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~  162 (184)
                      .....++.+-.++|++..++ +.++++.+|..+++.+|.+..+|+.++++++++++.+.+|++. .|+.
T Consensus       478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence            77777888888889999885 4599999999999999999999999999999999999999998 5554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=1.2e-12  Score=92.33  Aligned_cols=123  Identities=27%  Similarity=0.372  Sum_probs=43.9

Q ss_pred             cCccccEEEeecCCCCCCCCccccc-CCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc-CCCCceE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSE-PVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY-DLPHLYK  102 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~l~~l~~  102 (184)
                      +..+++.|++.+|.+..  + +.++ .+.+|+.|++++|.++.++ ++..++.|++|++++|+++.++..+. .+++|+.
T Consensus        17 n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            44466777887777763  2 2333 4667777888888777763 46667777888888887777654432 4677777


Q ss_pred             EEccccccccch--hhhcCCCCCCEEEccCCCCCCcch----hhhcCCCCCEEec
Q psy3785         103 FNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDA  151 (184)
Q Consensus       103 L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~----~~~~~~~L~~l~L  151 (184)
                      |.+++|++..+.  ..+..++.|+.+++.+|.++..+.    .+..+|+|+.+|-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            777777776442  356677777777777777774432    2566777777763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=6.3e-13  Score=93.76  Aligned_cols=126  Identities=29%  Similarity=0.387  Sum_probs=53.1

Q ss_pred             cccCCCCccEEEecCCccccCchhhh-CCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhh-cCCCCCC
Q psy3785          47 QSEPVLKLKVLNLQYNNLKGLPDEIR-HLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNI-GNLTSLL  124 (184)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~-~~~~~L~  124 (184)
                      ...+..++++|++.+|.++.+. .+. .+.+++.|++++|.++.++ .+..++.|++|++++|+++.+++.+ ..++.|+
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            3445667899999999999873 454 5789999999999999885 4667899999999999999886544 4689999


Q ss_pred             EEEccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcH---HHhhhhhcccccc
Q psy3785         125 VLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPW---KLFSKFHQNRSSR  174 (184)
Q Consensus       125 ~l~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~---~~~~~~~~l~~~~  174 (184)
                      .+++++|++..+.  ..+..++.|+.+++.+|+++..+.   .+...+++|+.++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            9999999998654  347889999999999999987543   4666777776554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=2.2e-12  Score=109.23  Aligned_cols=127  Identities=23%  Similarity=0.358  Sum_probs=68.8

Q ss_pred             cccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc------------
Q psy3785          28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY------------   95 (184)
Q Consensus        28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~------------   95 (184)
                      .|+.|++++|.+.  .+|..+.  .+|+.|++++|++..+|..+.  ++|+.|++++|+++.+|..+.            
T Consensus       242 ~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~  315 (754)
T PRK15370        242 TIQEMELSINRIT--ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS  315 (754)
T ss_pred             cccEEECcCCccC--cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCc
Confidence            4566666666554  3343322  345555555555555554432  245555555555554432111            


Q ss_pred             -------CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785          96 -------DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF  164 (184)
Q Consensus        96 -------~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~  164 (184)
                             ..++|+.|.+++|.++.+|..+.  +.|+.|++++|.++.+|..+  .+.|+.|++++|.++.+|..+.
T Consensus       316 Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~  387 (754)
T PRK15370        316 LTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP  387 (754)
T ss_pred             cccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH
Confidence                   01345666666666665554332  46677777777776666543  2467777777777777666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.32  E-value=5e-12  Score=107.11  Aligned_cols=148  Identities=18%  Similarity=0.275  Sum_probs=88.5

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY   95 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~   95 (184)
                      +.++|..+  .+.++.|++++|.+.  .+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++|.++.+|..+.
T Consensus       190 LtsLP~~I--p~~L~~L~Ls~N~Lt--sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~  261 (754)
T PRK15370        190 LTTIPACI--PEQITTLILDNNELK--SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP  261 (754)
T ss_pred             cCcCCccc--ccCCcEEEecCCCCC--cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh
Confidence            34444433  246778888887766  4455433  467777777777777776553  357777777777776665543


Q ss_pred             CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhh-------------------cCCCCCEEeccCCCC
Q psy3785          96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIG-------------------YMKSLTHIDASHNTI  156 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~-------------------~~~~L~~l~L~~n~l  156 (184)
                        .+|+.|++++|.++.+|..+.  +.|+.|++++|.++.+|..+.                   ..++|+.+++++|.+
T Consensus       262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L  337 (754)
T PRK15370        262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENAL  337 (754)
T ss_pred             --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcc
Confidence              356777777777766655442  356677777766665543211                   123466666666666


Q ss_pred             CCCcHHHhhhhhcccccccccc
Q psy3785         157 SYVPWKLFSKFHQNRSSRFGCA  178 (184)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~~~~~  178 (184)
                      +++|..+.   +.|+.+.++.|
T Consensus       338 t~LP~~l~---~sL~~L~Ls~N  356 (754)
T PRK15370        338 TSLPASLP---PELQVLDVSKN  356 (754)
T ss_pred             ccCChhhc---CcccEEECCCC
Confidence            66665432   34555555444

>KOG0618|consensus

Probab=99.29  E-value=6.2e-13  Score=111.46  Aligned_cols=144  Identities=26%  Similarity=0.375  Sum_probs=116.6

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAVYDLPHLYKF  103 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L  103 (184)
                      .+..|+.|.+.+|...+ ..-+.+..+.+|+.|++++|.++.+|.. +.++..|+.|+++||.++.+|..+..++.|++|
T Consensus       357 ~~~~Lq~LylanN~Ltd-~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTD-SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL  435 (1081)
T ss_pred             hhHHHHHHHHhcCcccc-cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence            56788888899998887 5555677889999999999999998865 788999999999999999999888889999999


Q ss_pred             EccccccccchhhhcCCCCCCEEEccCCCCCCc--chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccc
Q psy3785         104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR  171 (184)
Q Consensus       104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~  171 (184)
                      ..-+|++..+| .+..++.|+.+|++.|.++.+  +.... .++|+++|+++|.-..+....+..++.+.
T Consensus       436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~  503 (1081)
T KOG0618|consen  436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLS  503 (1081)
T ss_pred             hhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhh
Confidence            99999998888 688899999999999999844  33222 28899999999986555555555444443

>KOG0618|consensus

Probab=99.28  E-value=1.2e-13  Score=115.67  Aligned_cols=82  Identities=23%  Similarity=0.414  Sum_probs=40.8

Q ss_pred             CCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccc
Q psy3785          96 DLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSR  174 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~  174 (184)
                      ++.+|+.|+++.|++..+|+ .+..+..|+.|++++|+++.+|..+..++.|+++...+|++..+|  -+..++++++++
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLD  458 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEe
Confidence            44555555555555555543 344555555555555555555544444444444444444444444  122344445555


Q ss_pred             ccccc
Q psy3785         175 FGCAL  179 (184)
Q Consensus       175 ~~~~~  179 (184)
                      ++||-
T Consensus       459 lS~N~  463 (1081)
T KOG0618|consen  459 LSCNN  463 (1081)
T ss_pred             cccch
Confidence            55543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.28  E-value=3.4e-12  Score=98.44  Aligned_cols=136  Identities=25%  Similarity=0.386  Sum_probs=71.0

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCC---ccEEEecCCcccc-----CchhhhCC-CCCCEEEcccCccc----
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLK---LKVLNLQYNNLKG-----LPDEIRHL-TNLNELALNNNQLE----   88 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~-----lp~~~~~l-~~L~~L~l~~n~l~----   88 (184)
                      .+..+++|+.|++++|.+.. ..+..+..+..   |+.|++++|.+++     +...+..+ ++|+.|++++|.++    
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGP-DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHhcCceeEEEccCCCCCh-hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            34445566666666666543 22333333333   6666666666552     22334444 56666666666655    


Q ss_pred             -cchhhhcCCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCC
Q psy3785          89 -MINEAVYDLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTIS  157 (184)
Q Consensus        89 -~~~~~~~~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~  157 (184)
                       .++..+..+.++++|++++|.++.     ++..+...+.|+.+++++|.++.     +...+..+++|+.+++++|.++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence             222333344556666666666551     22334444566666666665542     1223444556666666666665


Q ss_pred             C
Q psy3785         158 Y  158 (184)
Q Consensus       158 ~  158 (184)
                      .
T Consensus       235 ~  235 (319)
T cd00116         235 D  235 (319)
T ss_pred             h
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237|consensus

Probab=99.23  E-value=3.1e-12  Score=98.61  Aligned_cols=72  Identities=24%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             ccccc-cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecC-CccccCchh-hhCCCCCCEEEcccCccc
Q psy3785          16 LVSLV-GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQY-NNLKGLPDE-IRHLTNLNELALNNNQLE   88 (184)
Q Consensus        16 ~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~-~~~l~~L~~L~l~~n~l~   88 (184)
                      +..+| ++|+.+++||.+|++.|++.. .-|..+..++++.+|-+-+ |+|+.+|.+ |..+.+++.|.+.-|++.
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             cccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence            33433 456778888888888888876 6688888888877765544 787777654 555555555544444443

>KOG0532|consensus

Probab=99.23  E-value=2.5e-13  Score=108.75  Aligned_cols=142  Identities=32%  Similarity=0.403  Sum_probs=75.3

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY   95 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~   95 (184)
                      ...++..+..+..|+.+.++.|.+.  .+|..+.++..|+.++++.|+++.+|..+..+ -|+.|.+++|+++.+|..+.
T Consensus        87 ~~elp~~~~~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig  163 (722)
T KOG0532|consen   87 FSELPEEACAFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIG  163 (722)
T ss_pred             cccCchHHHHHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccc
Confidence            3344444445555555555555555  45556666666666666666666666555443 35556666666666555555


Q ss_pred             CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcH
Q psy3785          96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW  161 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~  161 (184)
                      ...++..++.+.|.+..+|..++.+..|+.+.+..|.+-.+|.++. .-.|..||++.|++..+|-
T Consensus       164 ~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv  228 (722)
T KOG0532|consen  164 LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPV  228 (722)
T ss_pred             cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecch
Confidence            5555555555555555555444444444444444444444444444 2224444444444444443

>KOG1259|consensus

Probab=99.22  E-value=1.4e-12  Score=97.81  Aligned_cols=134  Identities=22%  Similarity=0.263  Sum_probs=113.5

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF  103 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L  103 (184)
                      ...+.|..+|+++|.+.  .+..++.-.|.++.|++++|.+..+.+ +..+++|+.|++++|.++.+...-..+.+.++|
T Consensus       281 dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             chHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            35678899999999988  567777878999999999999998754 788899999999999998775544468899999


Q ss_pred             EccccccccchhhhcCCCCCCEEEccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcH
Q psy3785         104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPW  161 (184)
Q Consensus       104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~  161 (184)
                      .+++|.+..+ ..++.+-.|..+++++|++..+.  ..++.+|.|.++.|.+|++..++.
T Consensus       358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             ehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            9999988766 44777788999999999998663  458999999999999999999765

>KOG0532|consensus

Probab=99.20  E-value=3e-12  Score=102.69  Aligned_cols=145  Identities=25%  Similarity=0.346  Sum_probs=128.1

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY   95 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~   95 (184)
                      +..++..+..+..|.+++++.|+..  .+|..+..+ -|+.|.+++|+++.+|..++-..+|..|+.+.|.+..+|..+.
T Consensus       110 ~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~  186 (722)
T KOG0532|consen  110 IRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG  186 (722)
T ss_pred             ceecchhhhhhhHHHHhhhccchhh--cCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhh
Confidence            4457777888999999999999987  567776644 4889999999999999999988899999999999999999899


Q ss_pred             CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785          96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF  164 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~  164 (184)
                      .+.+++.+++..|.+..+|+.+..+ .|..+|++.|++..+|-.+.+++.|+++-|.+|++.+-|..++
T Consensus       187 ~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             hHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence            9999999999999999999888855 4899999999999999999999999999999999999887654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.18  E-value=1.2e-10  Score=98.75  Aligned_cols=131  Identities=26%  Similarity=0.268  Sum_probs=72.5

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhh
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV   94 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~   94 (184)
                      .+.++|..+.  ++++.|++.+|++.  .+|..   .++|++|++++|.++.+|..   .++|+.|++.+|.++.+|..+
T Consensus       212 ~LtsLP~~l~--~~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp  281 (788)
T PRK15387        212 GLTTLPDCLP--AHITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP  281 (788)
T ss_pred             CCCcCCcchh--cCCCEEEccCCcCC--CCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch
Confidence            4445555443  36777777777766  34432   46677777777777776532   235555555555555444311


Q ss_pred             c-----------------CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCC
Q psy3785          95 Y-----------------DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS  157 (184)
Q Consensus        95 ~-----------------~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~  157 (184)
                      .                 ..++|+.|++++|.++.+|...   ..|..|++.+|.++.+|..   ...|+.|++++|.|+
T Consensus       282 ~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        282 SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA  355 (788)
T ss_pred             hhcCEEECcCCccccccccccccceeECCCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCCccC
Confidence            0                 1234555555555554443311   2344445555555544431   236788888888888


Q ss_pred             CCcH
Q psy3785         158 YVPW  161 (184)
Q Consensus       158 ~~~~  161 (184)
                      .+|.
T Consensus       356 ~LP~  359 (788)
T PRK15387        356 SLPT  359 (788)
T ss_pred             CCCC
Confidence            8765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=1.8e-11  Score=97.46  Aligned_cols=146  Identities=32%  Similarity=0.449  Sum_probs=66.7

Q ss_pred             cccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccc
Q psy3785          28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSN  107 (184)
Q Consensus        28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~  107 (184)
                      +|+.+++++|.+.  .+|..+..++.|+.|+++.|++.++|......+.++.|++++|.+..+|........++++.+++
T Consensus       141 nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence            4444444444443  22333444444444444444444444433344444444444444444443322222344444444


Q ss_pred             cccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785         108 NMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC  177 (184)
Q Consensus       108 n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~  177 (184)
                      |.....+..+.....+..+.+.+|.+..++..++.++.++.+++++|.++.++.  +.....++.+..+.
T Consensus       219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~  286 (394)
T COG4886         219 NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG  286 (394)
T ss_pred             CcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence            432222233333344444444444444444445556666666666666666654  34444444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.16  E-value=8.8e-11  Score=99.54  Aligned_cols=100  Identities=26%  Similarity=0.331  Sum_probs=62.4

Q ss_pred             CccEEEecCCccccCchhhhC-----------------CCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchh
Q psy3785          53 KLKVLNLQYNNLKGLPDEIRH-----------------LTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISD  115 (184)
Q Consensus        53 ~L~~L~l~~n~l~~lp~~~~~-----------------l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~  115 (184)
                      +|+.|++++|+++.+|....+                 ...|+.|++++|.++.+|..   .++++.|++++|+++.+|.
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~  419 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM  419 (788)
T ss_pred             ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc
Confidence            466666666666655432111                 12455666666666655532   2456666777777666654


Q ss_pred             hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785         116 NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       116 ~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      ..   ..|+.+++++|.++.+|..+..++.|..+++++|++++
T Consensus       420 l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        420 LP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             ch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence            22   34566777777777777777777788888888888877

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.13  E-value=5.5e-11  Score=91.72  Aligned_cols=164  Identities=22%  Similarity=0.222  Sum_probs=115.9

Q ss_pred             cccccCCCcCccccEEEeecCCCCC-----CCCcccccCCCCccEEEecCCcccc-CchhhhCCCC---CCEEEcccCcc
Q psy3785          17 VSLVGSASASALLYTYEISSDTGSG-----ESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTN---LNELALNNNQL   87 (184)
Q Consensus        17 ~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~---L~~L~l~~n~l   87 (184)
                      ..++..+...+.++.++++++....     ..++..+..+++|+.|++++|.+.. .+..+..+..   |+.|++++|++
T Consensus        41 ~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~  120 (319)
T cd00116          41 KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL  120 (319)
T ss_pred             HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence            3455556677788999998887652     1234566778899999999999875 3444444444   99999999988


Q ss_pred             cc-----chhhhcCC-CCceEEEccccccc-----cchhhhcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEec
Q psy3785          88 EM-----INEAVYDL-PHLYKFNVSNNMIA-----KISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDA  151 (184)
Q Consensus        88 ~~-----~~~~~~~l-~~l~~L~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L  151 (184)
                      +.     +...+..+ ++++.+++++|.++     .++..+..+..++.+++++|.++.     ++..+...+.|+.+++
T Consensus       121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L  200 (319)
T cd00116         121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL  200 (319)
T ss_pred             chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEec
Confidence            72     23445566 88999999999987     234456778889999999999882     3334556679999999


Q ss_pred             cCCCCCCCcH-H---Hhhhhhcccccccccccc
Q psy3785         152 SHNTISYVPW-K---LFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       152 ~~n~l~~~~~-~---~~~~~~~l~~~~~~~~~~  180 (184)
                      ++|.++.... .   .+..++.++.+.++.+.+
T Consensus       201 ~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             cCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence            9999886332 2   223445677777766543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.11  E-value=5.2e-10  Score=99.74  Aligned_cols=90  Identities=22%  Similarity=0.339  Sum_probs=50.1

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-cccCchhhhCCCCCCEEEcccC-ccccchh
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKGLPDEIRHLTNLNELALNNN-QLEMINE   92 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~~~~l~~L~~L~l~~n-~l~~~~~   92 (184)
                      .+..++..+..+++|+.++++++.... .+| .+..+++|+.|++.+|. +..+|..+..+++|+.|++++| .++.+|.
T Consensus       622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        622 KLEKLWDGVHSLTGLRNIDLRGSKNLK-EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             cccccccccccCCCCCEEECCCCCCcC-cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            344555666666777777776665432 333 35556666667766653 4446666666666666666665 3445543


Q ss_pred             hhcCCCCceEEEccc
Q psy3785          93 AVYDLPHLYKFNVSN  107 (184)
Q Consensus        93 ~~~~l~~l~~L~l~~  107 (184)
                      .+ .+.+|+.|++++
T Consensus       700 ~i-~l~sL~~L~Lsg  713 (1153)
T PLN03210        700 GI-NLKSLYRLNLSG  713 (1153)
T ss_pred             cC-CCCCCCEEeCCC
Confidence            32 334444444443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.11  E-value=7.7e-10  Score=98.68  Aligned_cols=85  Identities=25%  Similarity=0.383  Sum_probs=48.3

Q ss_pred             CCCEEEcccCc-cccchhhhcCCCCceEEEccccc-cccchhhhcCCC---------------------CCCEEEccCCC
Q psy3785          76 NLNELALNNNQ-LEMINEAVYDLPHLYKFNVSNNM-IAKISDNIGNLT---------------------SLLVLNISNNK  132 (184)
Q Consensus        76 ~L~~L~l~~n~-l~~~~~~~~~l~~l~~L~l~~n~-~~~~~~~~~~~~---------------------~L~~l~l~~n~  132 (184)
                      +|+.|++++|. +..+|..+..+++|+.|++++|. ++.+|... .++                     +++.|++++|.
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~  857 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG  857 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence            45555555553 33566666667777777777653 44444332 233                     34555555565


Q ss_pred             CCCcchhhhcCCCCCEEeccC-CCCCCCcH
Q psy3785         133 IESLPENIGYMKSLTHIDASH-NTISYVPW  161 (184)
Q Consensus       133 l~~l~~~~~~~~~L~~l~L~~-n~l~~~~~  161 (184)
                      ++++|..+..+++|+.+++++ +.+..+|.
T Consensus       858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             CccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence            666666666666666666666 34555544

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1.1e-10  Score=92.86  Aligned_cols=154  Identities=23%  Similarity=0.346  Sum_probs=102.5

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCC-CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVL-KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF  103 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L  103 (184)
                      ..+.++.+++.++.+.  .+++....+. +|+.|++++|.+..+|..+..++.|+.|++++|++..+|......+.++.+
T Consensus       114 ~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         114 ELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccceeEEecCCcccc--cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            4456677777777766  5555555553 777777777777777666677777777777777777776655566677777


Q ss_pred             EccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785         104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      .+++|+++.+|........|..+.+++|.+...+..+.....+..+.+.+|++..++..+ .....++.+...++.+.
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~-~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI-GNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchh-ccccccceecccccccc
Confidence            777777777766555555577777777765555555666677777777777776654322 33344666666666554

>PLN03150 hypothetical protein; Provisional

Probab=98.99  E-value=2.9e-09  Score=89.42  Aligned_cols=105  Identities=25%  Similarity=0.431  Sum_probs=84.5

Q ss_pred             CccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhcCCCCceEEEccccccc-cchhhhcCCCCCCEEEcc
Q psy3785          53 KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNIS  129 (184)
Q Consensus        53 ~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~  129 (184)
                      .++.|++.+|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|+.+++++.|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37778888888886 6888888889999999998887 67777888888999999998887 568888888889999999


Q ss_pred             CCCCC-CcchhhhcC-CCCCEEeccCCCCC
Q psy3785         130 NNKIE-SLPENIGYM-KSLTHIDASHNTIS  157 (184)
Q Consensus       130 ~n~l~-~l~~~~~~~-~~L~~l~L~~n~l~  157 (184)
                      +|.++ .+|..++.. ..+..+++.+|...
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccc
Confidence            88888 777766543 35667888888643

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=3.6e-09  Score=88.88  Aligned_cols=92  Identities=35%  Similarity=0.539  Sum_probs=82.6

Q ss_pred             CCCEEEcccCccc-cchhhhcCCCCceEEEccccccc-cchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEecc
Q psy3785          76 NLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDAS  152 (184)
Q Consensus        76 ~L~~L~l~~n~l~-~~~~~~~~l~~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~  152 (184)
                      .+..|++++|.+. .+|..+..+++|+.|++++|.++ .+|..++.++.|+.|++++|.++ .+|..++.+++|+.++++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3678899999988 77888999999999999999998 67888999999999999999999 788889999999999999


Q ss_pred             CCCCCC-CcHHHhhhh
Q psy3785         153 HNTISY-VPWKLFSKF  167 (184)
Q Consensus       153 ~n~l~~-~~~~~~~~~  167 (184)
                      +|.+++ +|..+....
T Consensus       499 ~N~l~g~iP~~l~~~~  514 (623)
T PLN03150        499 GNSLSGRVPAALGGRL  514 (623)
T ss_pred             CCcccccCChHHhhcc
Confidence            999998 888766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=1.7e-09  Score=63.25  Aligned_cols=58  Identities=38%  Similarity=0.568  Sum_probs=32.9

Q ss_pred             CCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccc
Q psy3785          52 LKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNM  109 (184)
Q Consensus        52 ~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~  109 (184)
                      |+|++|++++|+++.+|. .|..+++|++|++++|.++.++ ..+..+++|+++++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            345566666666666543 3555666666666666666554 334455566666665554

...

>KOG1259|consensus

Probab=98.89  E-value=2.6e-10  Score=85.76  Aligned_cols=131  Identities=21%  Similarity=0.311  Sum_probs=101.2

Q ss_pred             cccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEE
Q psy3785          47 QSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVL  126 (184)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l  126 (184)
                      .+-.+..|+++|+++|.++.+.++..-.+.++.|++++|.+..+.. +..+++|+.|++++|.++.+-.+.-.+.+++.+
T Consensus       279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            3444678999999999999988877778899999999999987754 778899999999999988775555566778899


Q ss_pred             EccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcH-HHhhhhhccccccccccc
Q psy3785         127 NISNNKIESLPENIGYMKSLTHIDASHNTISYVPW-KLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       127 ~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~-~~~~~~~~l~~~~~~~~~  179 (184)
                      .++.|.+.++.. ++.+.+|..+|+++|+|..+.. .-...++.|..+.+..|.
T Consensus       358 ~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  358 KLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ehhhhhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            999998877643 6778899999999999987543 223445555555544443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=5.6e-09  Score=61.01  Aligned_cols=57  Identities=40%  Similarity=0.604  Sum_probs=34.0

Q ss_pred             CCCEEEcccCccccchh-hhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCC
Q psy3785          76 NLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNK  132 (184)
Q Consensus        76 ~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~  132 (184)
                      +|++|++++|+++.+|. .+..+++|+++++++|.++.++ ..+.++++|+.+++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666666666653 3445666666666666666553 345666666666666654

...

>KOG4579|consensus

Probab=98.80  E-value=7.5e-10  Score=74.18  Aligned_cols=111  Identities=21%  Similarity=0.328  Sum_probs=68.7

Q ss_pred             ccEEEecCCccccCc---hhhhCCCCCCEEEcccCccccchhhhcC-CCCceEEEccccccccchhhhcCCCCCCEEEcc
Q psy3785          54 LKVLNLQYNNLKGLP---DEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNIS  129 (184)
Q Consensus        54 L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~~~~~~~~-l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~  129 (184)
                      +..++++.|.+-.++   ..+....+|..+++++|.+..+|..+.. .+..+.+++++|.++.+|..+..++.|+.++++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            445556666555432   3344445666666667666666655553 446666677777766666666666777777777


Q ss_pred             CCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785         130 NNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF  164 (184)
Q Consensus       130 ~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~  164 (184)
                      .|.+...|+.+..+.++..++.-+|.+..+|...+
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF  143 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence            77666666665556666666666666666665533

>KOG1909|consensus

Probab=98.79  E-value=9.3e-10  Score=83.81  Aligned_cols=164  Identities=16%  Similarity=0.128  Sum_probs=113.5

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCC---cccccCCCCccEEEecCCccccC-----ch---------hhhCCCCCC
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESN---MSQSEPVLKLKVLNLQYNNLKGL-----PD---------EIRHLTNLN   78 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~l-----p~---------~~~~l~~L~   78 (184)
                      ++-+-..+...++|+.++||+|-+....+   ...+.++..|++|.+.+|.++..     ..         ...+-+.|+
T Consensus        81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr  160 (382)
T KOG1909|consen   81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR  160 (382)
T ss_pred             HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence            33444555678899999999999875332   23455667899999999998852     11         124456899


Q ss_pred             EEEcccCcccc-----chhhhcCCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCCC-----cchhhhcC
Q psy3785          79 ELALNNNQLEM-----INEAVYDLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIES-----LPENIGYM  143 (184)
Q Consensus        79 ~L~l~~n~l~~-----~~~~~~~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~  143 (184)
                      +++..+|++..     +...+...+.++.+.++.|+|..     +...+..|+.|+.|++.+|-++.     +...+..+
T Consensus       161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~  240 (382)
T KOG1909|consen  161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW  240 (382)
T ss_pred             EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence            99999998873     33445567888999999888761     24567888999999999998872     23446677


Q ss_pred             CCCCEEeccCCCCCCCc-H----HHhhhhhccccccccccc
Q psy3785         144 KSLTHIDASHNTISYVP-W----KLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       144 ~~L~~l~L~~n~l~~~~-~----~~~~~~~~l~~~~~~~~~  179 (184)
                      +.|+.++++++.+..-- .    .+.+..+.++.+.+..|-
T Consensus       241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             chheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            88888888888887622 2    223445566666655443

>KOG3207|consensus

Probab=98.75  E-value=3.9e-09  Score=82.68  Aligned_cols=135  Identities=24%  Similarity=0.315  Sum_probs=63.3

Q ss_pred             CcCccccEEEeecCCCCC-CCCcccccCCCCccEEEecCCccccC-chh-hhCCCCCCEEEcccCccc--cchhhhcCCC
Q psy3785          24 SASALLYTYEISSDTGSG-ESNMSQSEPVLKLKVLNLQYNNLKGL-PDE-IRHLTNLNELALNNNQLE--MINEAVYDLP   98 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~-~~~l~~L~~L~l~~n~l~--~~~~~~~~l~   98 (184)
                      ..+++++.||++.|-+.. ..+......+|+|+.|.++.|.+... ... -..+++++.|.++.|.++  .+..-...+|
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            345566666666555442 12333344455555555555554431 110 123445555555555544  2222222344


Q ss_pred             ------------------------CceEEEccccccccch--hhhcCCCCCCEEEccCCCCCCc--chh-----hhcCCC
Q psy3785          99 ------------------------HLYKFNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESL--PEN-----IGYMKS  145 (184)
Q Consensus        99 ------------------------~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l--~~~-----~~~~~~  145 (184)
                                              .|+.|++++|.+-..+  ...+.++.|..++++.+++.++  |+.     ....++
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k  302 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK  302 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence                                    4555555555444332  2345555555555555555532  221     233455


Q ss_pred             CCEEeccCCCCCC
Q psy3785         146 LTHIDASHNTISY  158 (184)
Q Consensus       146 L~~l~L~~n~l~~  158 (184)
                      |++|++..|++..
T Consensus       303 L~~L~i~~N~I~~  315 (505)
T KOG3207|consen  303 LEYLNISENNIRD  315 (505)
T ss_pred             ceeeecccCcccc
Confidence            6666666666544

>KOG4237|consensus

Probab=98.70  E-value=2.3e-09  Score=83.10  Aligned_cols=111  Identities=23%  Similarity=0.370  Sum_probs=55.4

Q ss_pred             ccEEEecCCccccCchh-hhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccc-cccccch-hhhcCCCCCCEEEcc
Q psy3785          54 LKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSN-NMIAKIS-DNIGNLTSLLVLNIS  129 (184)
Q Consensus        54 L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~-n~~~~~~-~~~~~~~~L~~l~l~  129 (184)
                      .+++.+..|+|+.+|+. |..+++|+.|+|++|.|+.+ |..|..+..+..|.+.+ |+|+.+| ..|+++..++.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            44555555555555433 45555555555555555544 34444555554444443 4555554 234555555555555


Q ss_pred             CCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785         130 NNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLF  164 (184)
Q Consensus       130 ~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~  164 (184)
                      -|.+..++ +.+..+++++.+++-+|.+..++...+
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf  184 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF  184 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence            55554333 234445555555555555554444333

>KOG1859|consensus

Probab=98.69  E-value=1.2e-09  Score=90.53  Aligned_cols=125  Identities=23%  Similarity=0.318  Sum_probs=76.4

Q ss_pred             CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhh-hcCCCCCCEEEccCC
Q psy3785          53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNN  131 (184)
Q Consensus        53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n  131 (184)
                      .|...++++|.+..+...++-++.++.|+|++|+++.+. .+..+++|++|+++.|.+..+|.- ..+|. |..|.+++|
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            355556666666665555666667777777777776654 455667777777777777666542 22333 777777777


Q ss_pred             CCCCcchhhhcCCCCCEEeccCCCCCCCc-HHHhhhhhcccccccccccc
Q psy3785         132 KIESLPENIGYMKSLTHIDASHNTISYVP-WKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       132 ~l~~l~~~~~~~~~L~~l~L~~n~l~~~~-~~~~~~~~~l~~~~~~~~~~  180 (184)
                      .++++.. +.++++|+.+|++.|.|.+.. -.....+..|..+++.+|-+
T Consensus       243 ~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  243 ALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            7666533 566777777777777776632 23334445555555544433

>KOG3207|consensus

Probab=98.65  E-value=2.2e-09  Score=83.96  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=107.6

Q ss_pred             cccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc---CchhhhCCCCCCEEEcccCccccc-hhh-
Q psy3785          19 LVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG---LPDEIRHLTNLNELALNNNQLEMI-NEA-   93 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L~~L~l~~n~l~~~-~~~-   93 (184)
                      +...=+.+.+|+.+.+.++....-........+++++.|+++.|-+..   +-.-...+++|+.|.++.|++... ... 
T Consensus       113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT  192 (505)
T ss_pred             HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence            333346788999999998887652222466779999999999998776   334457799999999999998732 211 


Q ss_pred             hcCCCCceEEEccccccc--cchhhhcCC------------------------CCCCEEEccCCCCCCcc--hhhhcCCC
Q psy3785          94 VYDLPHLYKFNVSNNMIA--KISDNIGNL------------------------TSLLVLNISNNKIESLP--ENIGYMKS  145 (184)
Q Consensus        94 ~~~l~~l~~L~l~~n~~~--~~~~~~~~~------------------------~~L~~l~l~~n~l~~l~--~~~~~~~~  145 (184)
                      -..+++++.|.++.|+++  .+......+                        .+|+.|+|++|.+..++  ...+.++.
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            125789999999999987  222222233                        45556666666655554  23566777


Q ss_pred             CCEEeccCCCCCCC--cHH----Hhhhhhcccccccccccc
Q psy3785         146 LTHIDASHNTISYV--PWK----LFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       146 L~~l~L~~n~l~~~--~~~----~~~~~~~l~~~~~~~~~~  180 (184)
                      |+.++++.+.++++  |..    .-...+.++.+.+..|.+
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            77777777777663  221    123445666666666655

>KOG4579|consensus

Probab=98.62  E-value=1.4e-09  Score=72.86  Aligned_cols=132  Identities=18%  Similarity=0.192  Sum_probs=96.6

Q ss_pred             cCccccEEEeecCCCCCCCCccc---ccCCCCccEEEecCCccccCchhhhC-CCCCCEEEcccCccccchhhhcCCCCc
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQ---SEPVLKLKVLNLQYNNLKGLPDEIRH-LTNLNELALNNNQLEMINEAVYDLPHL  100 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~l~~l  100 (184)
                      .-..+..++++.+..-  .+++.   +....+|+..++++|.+.++|+.|.. .+..+++++++|.+..+|..+..++.|
T Consensus        25 dakE~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL  102 (177)
T KOG4579|consen   25 DAKELHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL  102 (177)
T ss_pred             HHHHhhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence            4455667778777644  23333   33446677789999999999887644 558899999999999999888899999


Q ss_pred             eEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785         101 YKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       101 ~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      +.++++.|.+...|.-+..+.++-.|+..+|...+++-.+..........+.++++.+
T Consensus       103 r~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  103 RSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             hhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence            9999999999888877766888888888888887776543333333344455556655

>KOG1859|consensus

Probab=98.59  E-value=5e-10  Score=92.60  Aligned_cols=130  Identities=25%  Similarity=0.312  Sum_probs=103.8

Q ss_pred             ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchh-hhcCCCCceEEEc
Q psy3785          27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNV  105 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l  105 (184)
                      .+|...+.++|...  .+..++.-++.++.|+++.|+++++. .+..+++|+.|||++|++..+|. ....+ +|+.|.+
T Consensus       164 n~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence            34555566666655  66788888899999999999999975 78889999999999999998874 22223 5999999


Q ss_pred             cccccccchhhhcCCCCCCEEEccCCCCCCcch--hhhcCCCCCEEeccCCCCCCCcH
Q psy3785         106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVPW  161 (184)
Q Consensus       106 ~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~L~~n~l~~~~~  161 (184)
                      ++|.++.+ ..+.++..|+.||+++|-+.+...  .++.+..|+.+.|.+|++..-|.
T Consensus       240 rnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  240 RNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             cccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence            99998876 346678889999999998875532  36677889999999999988655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.43  E-value=4.2e-07  Score=49.30  Aligned_cols=38  Identities=39%  Similarity=0.628  Sum_probs=21.5

Q ss_pred             CccEEEecCCccccCchhhhCCCCCCEEEcccCccccc
Q psy3785          53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI   90 (184)
Q Consensus        53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~   90 (184)
                      +|++|++++|+++++|..+.++++|++|++++|+++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45566666666666655556666666666666665544

...

>KOG0531|consensus

Probab=98.39  E-value=5.9e-08  Score=77.92  Aligned_cols=110  Identities=27%  Similarity=0.427  Sum_probs=59.7

Q ss_pred             ccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEE
Q psy3785          48 SEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLN  127 (184)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~  127 (184)
                      +..+.+++.+++.+|.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.++.+.. +..+..++.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~  168 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD  168 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence            44455566666666666655443455566666666666666542 22334446666666666654422 33355566666


Q ss_pred             ccCCCCCCcchh-hhcCCCCCEEeccCCCCCCC
Q psy3785         128 ISNNKIESLPEN-IGYMKSLTHIDASHNTISYV  159 (184)
Q Consensus       128 l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~  159 (184)
                      +++|.++.+... ...+.++..+.+.+|.+..+
T Consensus       169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  169 LSYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             CCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            666665544432 34455555555666655553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.37  E-value=6.1e-07  Score=48.66  Aligned_cols=38  Identities=34%  Similarity=0.553  Sum_probs=19.2

Q ss_pred             CCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCC
Q psy3785         122 SLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYV  159 (184)
Q Consensus       122 ~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~  159 (184)
                      +|+.+++++|.++++|..+..+++|+.+++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            34555555555555554455555555555555555543

...

>KOG3665|consensus

Probab=98.28  E-value=6.2e-07  Score=75.98  Aligned_cols=145  Identities=17%  Similarity=0.162  Sum_probs=89.4

Q ss_pred             CccccEEEeecCCCCCCCCcccccC-CCCccEEEecCCcccc--CchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785          26 SALLYTYEISSDTGSGESNMSQSEP-VLKLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK  102 (184)
Q Consensus        26 ~~~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  102 (184)
                      -.+|+.|++++........|..++. +|+|+.|.+++-.+..  +..-..++++|..||+++++++.+ .++..+++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            4567777777766554445555555 5777777777776654  222345567777777777777765 55667777777


Q ss_pred             EEccccccccch--hhhcCCCCCCEEEccCCCCCCcchh-------hhcCCCCCEEeccCCCCCC-CcHHHhhhhhccc
Q psy3785         103 FNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPEN-------IGYMKSLTHIDASHNTISY-VPWKLFSKFHQNR  171 (184)
Q Consensus       103 L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~~-------~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~  171 (184)
                      |.+.+=.+....  ..+.++++|+.||++..+...-+..       -..+|.|+.+|.|++.+.. +-.......++++
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            777766555322  3466777777887777654422211       2347777888887777766 3344444444444

>KOG1644|consensus

Probab=98.27  E-value=1.6e-06  Score=61.88  Aligned_cols=103  Identities=27%  Similarity=0.412  Sum_probs=71.4

Q ss_pred             CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcC-CCCceEEEccccccccch--hhhcCCCCCCEEEcc
Q psy3785          53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKIS--DNIGNLTSLLVLNIS  129 (184)
Q Consensus        53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-l~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~  129 (184)
                      ....+|+.+|.+-.++ .+..++.|.+|.+.+|+|+.+...+.. ++++..|.+.+|.+..+.  ..+..||+|+.+.+-
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            4666778888776642 356677788888888888877655553 567888888888877653  356777888888888


Q ss_pred             CCCCCCcch----hhhcCCCCCEEeccCCCC
Q psy3785         130 NNKIESLPE----NIGYMKSLTHIDASHNTI  156 (184)
Q Consensus       130 ~n~l~~l~~----~~~~~~~L~~l~L~~n~l  156 (184)
                      +|.+...+.    .+..+|+|+.+|..+-..
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            887775432    255677788887665544

>KOG4658|consensus

Probab=98.23  E-value=1.4e-06  Score=75.77  Aligned_cols=107  Identities=23%  Similarity=0.250  Sum_probs=61.1

Q ss_pred             CccccEEEeecCCC-CCCCCcccccCCCCccEEEecCC-ccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785          26 SALLYTYEISSDTG-SGESNMSQSEPVLKLKVLNLQYN-NLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF  103 (184)
Q Consensus        26 ~~~l~~l~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L  103 (184)
                      .++|+.|-+..|.- ........+..++.|..||+++| .++++|..++.+-+|++|+++++.+..+|..+..+..|.+|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            33566666665541 11122333555666666666655 34456666666666666666666666666666666666666


Q ss_pred             Eccccccc-cchhhhcCCCCCCEEEccCCC
Q psy3785         104 NVSNNMIA-KISDNIGNLTSLLVLNISNNK  132 (184)
Q Consensus       104 ~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~  132 (184)
                      ++..+..- .+|.....++.|+++.+....
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            66655432 233334446666666665544

>KOG4658|consensus

Probab=98.23  E-value=1.7e-06  Score=75.14  Aligned_cols=102  Identities=29%  Similarity=0.413  Sum_probs=47.4

Q ss_pred             CccEEEecCCc--cccCchh-hhCCCCCCEEEcccCc-cccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEc
Q psy3785          53 KLKVLNLQYNN--LKGLPDE-IRHLTNLNELALNNNQ-LEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNI  128 (184)
Q Consensus        53 ~L~~L~l~~n~--l~~lp~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l  128 (184)
                      .|+.|-+.+|.  +..++.. |..++.|++||+++|. +..+|..++.+-+|++|++++..+..+|..++++..|.+|++
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence            44444554443  3333322 3445555555555442 445555555555555555555555555555555555555555


Q ss_pred             cCCCCC-CcchhhhcCCCCCEEeccCC
Q psy3785         129 SNNKIE-SLPENIGYMKSLTHIDASHN  154 (184)
Q Consensus       129 ~~n~l~-~l~~~~~~~~~L~~l~L~~n  154 (184)
                      ..+.-- .+|.....+.+|+++.+-..
T Consensus       626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  626 EVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccchhhhcccccEEEeecc
Confidence            444322 22333333444555444333

>KOG1909|consensus

Probab=98.22  E-value=1e-06  Score=67.59  Aligned_cols=132  Identities=19%  Similarity=0.321  Sum_probs=57.5

Q ss_pred             cCccccEEEeecCCCCCCC---CcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCccc-----cch
Q psy3785          25 ASALLYTYEISSDTGSGES---NMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLE-----MIN   91 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~-----~~~   91 (184)
                      .-+.|+.+....|+.-...   +...+...+.|+.+.+..|.+..     +...+..+++|++|++++|.++     .+.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            3344555555444433211   23334444455555555554442     2334444555555555555554     112


Q ss_pred             hhhcCCCCceEEEcccccccc-----chhhh-cCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCC
Q psy3785          92 EAVYDLPHLYKFNVSNNMIAK-----ISDNI-GNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTI  156 (184)
Q Consensus        92 ~~~~~l~~l~~L~l~~n~~~~-----~~~~~-~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l  156 (184)
                      ..+..+++|+.+++++|.+..     +...+ ...|.|+.+.+.+|.++.     +...+..-+.|..|+|++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            233344455555555554441     11111 123455555555555541     111133344455555555555

>KOG0531|consensus

Probab=98.21  E-value=2.7e-07  Score=74.19  Aligned_cols=128  Identities=29%  Similarity=0.371  Sum_probs=100.0

Q ss_pred             cCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEc
Q psy3785          49 EPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNI  128 (184)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l  128 (184)
                      ..+..++.+.+..|.+..+-..+..++++..+++.+|.+..+...+..+.+|+.|++++|.|+.+. .+..++.|..|++
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL  147 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence            356677778888888887555678889999999999999988665678999999999999999773 3556667999999


Q ss_pred             cCCCCCCcchhhhcCCCCCEEeccCCCCCCCcH-HHhhhhhccccccccccc
Q psy3785         129 SNNKIESLPENIGYMKSLTHIDASHNTISYVPW-KLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       129 ~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~-~~~~~~~~l~~~~~~~~~  179 (184)
                      .+|.++.+.. +..++.|..+++++|.+..+.. . ...+..+..+.++.+.
T Consensus       148 ~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  148 SGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS  197 (414)
T ss_pred             ccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence            9999997765 3448899999999999999766 2 3444555545544443

>KOG1644|consensus

Probab=98.19  E-value=1.2e-06  Score=62.45  Aligned_cols=121  Identities=21%  Similarity=0.290  Sum_probs=88.5

Q ss_pred             ccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhc-CCCCCCEEEccCCC
Q psy3785          54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIG-NLTSLLVLNISNNK  132 (184)
Q Consensus        54 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~-~~~~L~~l~l~~n~  132 (184)
                      -+++++.+.++..+..--........+++++|.+..+ ..+..++.|.+|.+.+|+|+.+.+.+. -.+.+..|.+.+|+
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            4456666666554322112234678899999998766 345678999999999999998855444 45779999999999


Q ss_pred             CCCcch--hhhcCCCCCEEeccCCCCCCCcH---HHhhhhhccccccc
Q psy3785         133 IESLPE--NIGYMKSLTHIDASHNTISYVPW---KLFSKFHQNRSSRF  175 (184)
Q Consensus       133 l~~l~~--~~~~~~~L~~l~L~~n~l~~~~~---~~~~~~~~l~~~~~  175 (184)
                      +.++.+  .+..+|.|+.+.+-+|+++....   .+...+++++++.+
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF  147 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF  147 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence            997754  37889999999999999988543   35556666666554

>KOG2982|consensus

Probab=98.19  E-value=1.8e-07  Score=70.47  Aligned_cols=155  Identities=18%  Similarity=0.209  Sum_probs=97.9

Q ss_pred             cCccccEEEeecCCCCC-CCCcccccCCCCccEEEecCCccccCchhh-hCCCCCCEEEcccCccc--cchhhhcCCCCc
Q psy3785          25 ASALLYTYEISSDTGSG-ESNMSQSEPVLKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLE--MINEAVYDLPHL  100 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L~~L~l~~n~l~--~~~~~~~~l~~l  100 (184)
                      ..+.++.+|+..|.+++ +++...+..+|+|+.|+++.|+++..-+.+ ....++++|.+.+..+.  .+...+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            46678899999999886 346777888999999999999988632222 35668899999988766  344555578888


Q ss_pred             eEEEccccccccc---hhhh---------------------------cCCCCCCEEEccCCCCCCcchh--hhcCCCCCE
Q psy3785         101 YKFNVSNNMIAKI---SDNI---------------------------GNLTSLLVLNISNNKIESLPEN--IGYMKSLTH  148 (184)
Q Consensus       101 ~~L~l~~n~~~~~---~~~~---------------------------~~~~~L~~l~l~~n~l~~l~~~--~~~~~~L~~  148 (184)
                      +.|+++.|....+   ....                           +-.|++..+.++.|.++++...  ....|.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            8888888844311   0000                           1234444555555555544322  334556667


Q ss_pred             EeccCCCCCC-CcHHHhhhhhccccccccccc
Q psy3785         149 IDASHNTISY-VPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       149 l~L~~n~l~~-~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      ++|+.|+|.+ -.-......+++.-++...+.
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence            7777777766 223444555555555554443

>KOG3665|consensus

Probab=98.03  E-value=2.9e-06  Score=72.00  Aligned_cols=125  Identities=20%  Similarity=0.233  Sum_probs=98.4

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch--hhhcCCCCceE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN--EAVYDLPHLYK  102 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~l~~  102 (184)
                      -+|.|+.|.+++-.+...+.-....++|+|..||+++++++.+ .+++++++|++|.+.+=.+...+  ..++.+.+|+.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            6999999999999988767777888899999999999999988 77899999999998887777443  56788999999


Q ss_pred             EEccccccccch-------hhhcCCCCCCEEEccCCCCC-Cc-chhhhcCCCCCEEe
Q psy3785         103 FNVSNNMIAKIS-------DNIGNLTSLLVLNISNNKIE-SL-PENIGYMKSLTHID  150 (184)
Q Consensus       103 L~l~~n~~~~~~-------~~~~~~~~L~~l~l~~n~l~-~l-~~~~~~~~~L~~l~  150 (184)
                      |+++.......+       +.-..+|.|+.+|.+++.+. .+ ...+...++|+.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            999987655222       23356899999999998887 22 23344555555443

>KOG2120|consensus

Probab=97.91  E-value=2.8e-07  Score=69.56  Aligned_cols=84  Identities=19%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             cccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCc-cccch--hhhcCCCCceEE
Q psy3785          28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQ-LEMIN--EAVYDLPHLYKF  103 (184)
Q Consensus        28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~l~~l~~L  103 (184)
                      .++.+|++...+....+-..+..+..|+.+++.++.+.+ +...+.+-..|..++++.+. +++..  --+..+..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            577788887777665555566667777777777777776 45556666677777777763 55322  234456677777


Q ss_pred             Eccccccc
Q psy3785         104 NVSNNMIA  111 (184)
Q Consensus       104 ~l~~n~~~  111 (184)
                      +++|+...
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            77777644

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.89  E-value=8.9e-06  Score=60.88  Aligned_cols=149  Identities=17%  Similarity=0.107  Sum_probs=102.6

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcc----cccCCCCccEEEecCCccccCc-hhh-------------hCCCCC
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMS----QSEPVLKLKVLNLQYNNLKGLP-DEI-------------RHLTNL   77 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~lp-~~~-------------~~l~~L   77 (184)
                      +.-+.+.+.++|+|+.+++|+|-+.. ..|+    .+..-..|..|.+.+|.+..+. ..+             .+-+.|
T Consensus        81 L~~Ll~aLlkcp~l~~v~LSDNAfg~-~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~L  159 (388)
T COG5238          81 LVMLLKALLKCPRLQKVDLSDNAFGS-EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKL  159 (388)
T ss_pred             HHHHHHHHhcCCcceeeeccccccCc-ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCc
Confidence            33445566789999999999999876 3333    3444567999999999887532 112             335789


Q ss_pred             CEEEcccCccccch-----hhhcCCCCceEEEccccccccc------hhhhcCCCCCCEEEccCCCCCCc-----chhhh
Q psy3785          78 NELALNNNQLEMIN-----EAVYDLPHLYKFNVSNNMIAKI------SDNIGNLTSLLVLNISNNKIESL-----PENIG  141 (184)
Q Consensus        78 ~~L~l~~n~l~~~~-----~~~~~l~~l~~L~l~~n~~~~~------~~~~~~~~~L~~l~l~~n~l~~l-----~~~~~  141 (184)
                      +++....|++..-+     ..+.....++.+.+..|.|..-      -..+.-+..|..+++.+|-++..     ...+.
T Consensus       160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~  239 (388)
T COG5238         160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC  239 (388)
T ss_pred             eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence            99999999887433     2222345788999999988621      12345678899999999988732     33456


Q ss_pred             cCCCCCEEeccCCCCCC-CcHHHhh
Q psy3785         142 YMKSLTHIDASHNTISY-VPWKLFS  165 (184)
Q Consensus       142 ~~~~L~~l~L~~n~l~~-~~~~~~~  165 (184)
                      .++.|+.+.+.++.++. -...++.
T Consensus       240 ~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         240 EWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             ccchhhhccccchhhccccHHHHHH
Confidence            67778999998888877 3344443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.84  E-value=7.3e-05  Score=59.53  Aligned_cols=115  Identities=19%  Similarity=0.226  Sum_probs=66.8

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCC-ccccCchhhhCCCCCCEEEcccC-ccccchhhhcCCCCceE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYN-NLKGLPDEIRHLTNLNELALNNN-QLEMINEAVYDLPHLYK  102 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~l~~l~~  102 (184)
                      .+..++.|++++|.+.  .+|.   -.++|+.|.+.+| .+..+|..+.  .+|+.|.+.+| .+..+|.      .|+.
T Consensus        50 ~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence            4577888888888544  4452   1235888888775 5555665542  47788888877 5655554      3444


Q ss_pred             EEccccc---cccchhhhcCC------------------CCCCEEEccCCCCCCcchhhhcCCCCCEEeccCC
Q psy3785         103 FNVSNNM---IAKISDNIGNL------------------TSLLVLNISNNKIESLPENIGYMKSLTHIDASHN  154 (184)
Q Consensus       103 L~l~~n~---~~~~~~~~~~~------------------~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n  154 (184)
                      |.+..+.   +..+|..+..+                  +.|+.|++++|....+|..+.  .+|+.|.++.+
T Consensus       117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            5555443   23344433221                  356677777766554443222  45777777665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=9.8e-05  Score=58.82  Aligned_cols=112  Identities=19%  Similarity=0.280  Sum_probs=75.8

Q ss_pred             ccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccC-ccccchhhhcCCCCceEEEcccc-ccccchhhhcCCCCCCE
Q psy3785          48 SEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNN-QLEMINEAVYDLPHLYKFNVSNN-MIAKISDNIGNLTSLLV  125 (184)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~l~~l~~L~l~~n-~~~~~~~~~~~~~~L~~  125 (184)
                      +..+..++.|++++|.+..+| .+  ..+|+.|.+.++ .++.+|..+.  .+|+.|.+++| .+..+|..      |+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence            444688999999999999988 22  237999999986 5777776542  58999999998 56666653      555


Q ss_pred             EEccCCC---CCCcchhhhcC------------------CCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785         126 LNISNNK---IESLPENIGYM------------------KSLTHIDASHNTISYVPWKLFSKFHQN  170 (184)
Q Consensus       126 l~l~~n~---l~~l~~~~~~~------------------~~L~~l~L~~n~l~~~~~~~~~~~~~l  170 (184)
                      |++..+.   +..+|..+..+                  ++|+.|+++++....+|..+-..+..|
T Consensus       117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L  182 (426)
T PRK15386        117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSI  182 (426)
T ss_pred             EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEE
Confidence            5665554   33555443222                  368889999888766554443333333

>KOG2739|consensus

Probab=97.71  E-value=1.9e-05  Score=58.40  Aligned_cols=108  Identities=22%  Similarity=0.323  Sum_probs=67.4

Q ss_pred             CcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccC--ccc-cchhhhcCCCCceEEEccccccccch--hhhc
Q psy3785          44 NMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNN--QLE-MINEAVYDLPHLYKFNVSNNMIAKIS--DNIG  118 (184)
Q Consensus        44 ~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n--~l~-~~~~~~~~l~~l~~L~l~~n~~~~~~--~~~~  118 (184)
                      +....-.+..++.+++.+..++.+ .++..+++|+.|.++.|  ++. .++..+-.+++++++++++|++..+.  ..+.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            444444456677777777777764 23566778888888888  444 34333344588888888888877432  3456


Q ss_pred             CCCCCCEEEccCCCCCCcch----hhhcCCCCCEEecc
Q psy3785         119 NLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDAS  152 (184)
Q Consensus       119 ~~~~L~~l~l~~n~l~~l~~----~~~~~~~L~~l~L~  152 (184)
                      .+++|..+++..|..+.+..    .+..+++|.+++-.
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            66777788888877765421    23445555555443

>KOG2120|consensus

Probab=97.58  E-value=5e-06  Score=62.92  Aligned_cols=130  Identities=18%  Similarity=0.143  Sum_probs=81.2

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCC-cccc--CchhhhCCCCCCEEEcccCccc--cchhhhcC-C
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYN-NLKG--LPDEIRHLTNLNELALNNNQLE--MINEAVYD-L   97 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~l~~n~l~--~~~~~~~~-l   97 (184)
                      +.+.+|+-+.+.++...+ .+...+....+|..++++.+ .+++  +.--+.+++.|+.|++++|.+.  .+...+.. -
T Consensus       207 s~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            456777777777777655 56666777788888888777 4554  2223566778888888888655  22222332 3


Q ss_pred             CCceEEEccccccc----cchhhhcCCCCCCEEEccCCC-CC-CcchhhhcCCCCCEEeccCC
Q psy3785          98 PHLYKFNVSNNMIA----KISDNIGNLTSLLVLNISNNK-IE-SLPENIGYMKSLTHIDASHN  154 (184)
Q Consensus        98 ~~l~~L~l~~n~~~----~~~~~~~~~~~L~~l~l~~n~-l~-~l~~~~~~~~~L~~l~L~~n  154 (184)
                      ++++.|++++++-.    .+..-...|+.+.+||+++|. ++ ..-..+...+.|++++++.+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence            46777777776532    222234567777778777763 33 33344566666777776665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.40  E-value=0.0013  Score=43.75  Aligned_cols=118  Identities=19%  Similarity=0.278  Sum_probs=54.1

Q ss_pred             cccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-hhcCCCCceEEEccccccccch-hhhcCCCCC
Q psy3785          47 QSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSL  123 (184)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L  123 (184)
                      .+....+|+.+.+.. .+..++. .|..+++++.+.+..+ +..++. .+..+.+++.+.+.+ .+..++ ..+..++.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344556777777764 4555543 3566667777777664 666653 344555777777765 444443 345667777


Q ss_pred             CEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785         124 LVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQN  170 (184)
Q Consensus       124 ~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l  170 (184)
                      +.+.+..+ ++.++.. +... .++.+.+.. .+..++...|..++.|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            88777664 5555543 3444 777777665 5666666666655444

>KOG2982|consensus

Probab=97.35  E-value=0.00016  Score=54.96  Aligned_cols=62  Identities=23%  Similarity=0.317  Sum_probs=43.2

Q ss_pred             CCCceEEEccccccccch--hhhcCCCCCCEEEccCCCCCCcc--hhhhcCCCCCEEeccCCCCCC
Q psy3785          97 LPHLYKFNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        97 l~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      ++++..+-+.+|.+....  ...-..+.+..++++.+++.++.  +++...+.+..+.++++++..
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            566666667777665442  23445566677888888888664  457788888888888888765

>KOG2739|consensus

Probab=97.33  E-value=0.00013  Score=54.10  Aligned_cols=102  Identities=23%  Similarity=0.284  Sum_probs=72.4

Q ss_pred             hCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccc---cchhhhcCCCCCCEEEccCCCCCCcc--hhhhcCCCC
Q psy3785          72 RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA---KISDNIGNLTSLLVLNISNNKIESLP--ENIGYMKSL  146 (184)
Q Consensus        72 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~---~~~~~~~~~~~L~~l~l~~n~l~~l~--~~~~~~~~L  146 (184)
                      ..+..++.+.+.+..++.+ ..+..+++|++|.++.|.+.   .++.-...++.|+++++++|+++.+.  ..+..+++|
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3445666667777776654 33456889999999999443   33333455699999999999998542  235667788


Q ss_pred             CEEeccCCCCCCC---cHHHhhhhhcccccc
Q psy3785         147 THIDASHNTISYV---PWKLFSKFHQNRSSR  174 (184)
Q Consensus       147 ~~l~L~~n~l~~~---~~~~~~~~~~l~~~~  174 (184)
                      ..+++.++..+.+   ...+|..+++|+++.
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            8999988877773   346778888877543

>KOG2123|consensus

Probab=97.32  E-value=2.2e-05  Score=59.03  Aligned_cols=98  Identities=19%  Similarity=0.247  Sum_probs=69.9

Q ss_pred             CCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccch--hhhcCCCCCCEEEc
Q psy3785          51 VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS--DNIGNLTSLLVLNI  128 (184)
Q Consensus        51 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l  128 (184)
                      +.+++.|++.+|.+.++. -..+++.|++|.|+-|.|+.+ ..+..+.+|+.|.+..|.|..+.  ..+.+++.|+.|+|
T Consensus        18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            456777888888877752 236677888888888888766 33456778888888888887663  35788889999999


Q ss_pred             cCCCCCCc-c-----hhhhcCCCCCEEe
Q psy3785         129 SNNKIESL-P-----ENIGYMKSLTHID  150 (184)
Q Consensus       129 ~~n~l~~l-~-----~~~~~~~~L~~l~  150 (184)
                      ..|.+..- +     ..+..+|+|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            88887622 2     2356677777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.69  E-value=0.014  Score=38.71  Aligned_cols=118  Identities=20%  Similarity=0.289  Sum_probs=59.7

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh-hcCCCC
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA-VYDLPH   99 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~   99 (184)
                      .+....+|+.+.+.. .... .-...+..+..++.+.+.++ +..++.. +....+++.+.+.. .+..++.. +..+.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~-I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKK-IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--E-E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeE-eChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            345666788888764 2221 33455666778999999875 6766543 66676899999876 55556544 445888


Q ss_pred             ceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCC
Q psy3785         100 LYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSL  146 (184)
Q Consensus       100 l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L  146 (184)
                      ++.+.+..+ +..++ ..+.++ .++.+.+.. .++.++.. +..+++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            999999775 66664 356666 888888765 45555433 4445444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.58  E-value=0.0056  Score=46.31  Aligned_cols=113  Identities=27%  Similarity=0.295  Sum_probs=70.3

Q ss_pred             cccCCCCccEEEecCCcccc-Cc----hhhhCCCCCCEEEcccCccccc-----hh---------hhcCCCCceEEEccc
Q psy3785          47 QSEPVLKLKVLNLQYNNLKG-LP----DEIRHLTNLNELALNNNQLEMI-----NE---------AVYDLPHLYKFNVSN  107 (184)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~-lp----~~~~~l~~L~~L~l~~n~l~~~-----~~---------~~~~l~~l~~L~l~~  107 (184)
                      .+..+|+|+..++++|-++. .|    +.+.+.+.+..|.+++|.+..+     ..         ....-+.|+.+....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            35556777777777776664 22    3345566677777777765522     11         122346677777777


Q ss_pred             cccccchh-----hhcCCCCCCEEEccCCCCCC--cch----hhhcCCCCCEEeccCCCCCCC
Q psy3785         108 NMIAKISD-----NIGNLTSLLVLNISNNKIES--LPE----NIGYMKSLTHIDASHNTISYV  159 (184)
Q Consensus       108 n~~~~~~~-----~~~~~~~L~~l~l~~n~l~~--l~~----~~~~~~~L~~l~L~~n~l~~~  159 (184)
                      |++..-|.     .+..-..++.+.+..|.|+.  +..    .+..+.+|..+|+.+|.++..
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~  229 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE  229 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence            77653221     12222467778888888772  221    256788999999999999874

>KOG2123|consensus

Probab=96.47  E-value=0.00022  Score=53.72  Aligned_cols=98  Identities=23%  Similarity=0.229  Sum_probs=76.4

Q ss_pred             CCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcch--hhhcCCCCCEEe
Q psy3785          73 HLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPE--NIGYMKSLTHID  150 (184)
Q Consensus        73 ~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~  150 (184)
                      .+...+.|+..++.++.+. ....|+.++.|.++-|.|+.+ ..+..|.+|+.+.|..|.|..+..  .+.++|+|+.|.
T Consensus        17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3557788899999988652 234688999999999999988 448889999999999999987754  378899999999


Q ss_pred             ccCCCCCC--Cc---HHHhhhhhcccc
Q psy3785         151 ASHNTISY--VP---WKLFSKFHQNRS  172 (184)
Q Consensus       151 L~~n~l~~--~~---~~~~~~~~~l~~  172 (184)
                      |..|+=.+  -+   ..+...+++|+-
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkK  121 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKK  121 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchh
Confidence            99998655  22   245566666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.45  E-value=0.0015  Score=29.56  Aligned_cols=18  Identities=39%  Similarity=0.643  Sum_probs=8.8

Q ss_pred             ccEEEecCCccccCchhh
Q psy3785          54 LKVLNLQYNNLKGLPDEI   71 (184)
Q Consensus        54 L~~L~l~~n~l~~lp~~~   71 (184)
                      |++|++++|.++.+|+.|
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            445555555555444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.99  E-value=0.0043  Score=28.05  Aligned_cols=14  Identities=36%  Similarity=0.413  Sum_probs=6.1

Q ss_pred             CEEEcccCccccch
Q psy3785          78 NELALNNNQLEMIN   91 (184)
Q Consensus        78 ~~L~l~~n~l~~~~   91 (184)
                      ++|++++|+++.+|
T Consensus         3 ~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    3 EYLDLSGNNLTSIP   16 (22)
T ss_dssp             SEEEETSSEESEEG
T ss_pred             cEEECCCCcCEeCC
Confidence            44444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.61  E-value=0.0087  Score=25.22  Aligned_cols=12  Identities=50%  Similarity=0.717  Sum_probs=3.7

Q ss_pred             CCEEEcccCccc
Q psy3785          77 LNELALNNNQLE   88 (184)
Q Consensus        77 L~~L~l~~n~l~   88 (184)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            334444444433

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.56  E-value=0.017  Score=27.10  Aligned_cols=22  Identities=32%  Similarity=0.461  Sum_probs=16.6

Q ss_pred             CCCCEEeccCCCCCCCcHHHhh
Q psy3785         144 KSLTHIDASHNTISYVPWKLFS  165 (184)
Q Consensus       144 ~~L~~l~L~~n~l~~~~~~~~~  165 (184)
                      +.|+.+++++|.|+.+|..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5677888888888888777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.56  E-value=0.017  Score=27.10  Aligned_cols=22  Identities=32%  Similarity=0.461  Sum_probs=16.6

Q ss_pred             CCCCEEeccCCCCCCCcHHHhh
Q psy3785         144 KSLTHIDASHNTISYVPWKLFS  165 (184)
Q Consensus       144 ~~L~~l~L~~n~l~~~~~~~~~  165 (184)
                      +.|+.+++++|.|+.+|..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5677888888888888777654

>KOG0473|consensus

Probab=94.90  E-value=0.00039  Score=51.20  Aligned_cols=86  Identities=14%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             hhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEe
Q psy3785          71 IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHID  150 (184)
Q Consensus        71 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~  150 (184)
                      +......+.||++.|++..+...+..+..+..++++.|.+..+|..++....+..+++..|.....|...+..+.+++.+
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            33344455555555555444444444445555555555555555555555555555555555555555555555556665


Q ss_pred             ccCCCC
Q psy3785         151 ASHNTI  156 (184)
Q Consensus       151 L~~n~l  156 (184)
                      +.+|.+
T Consensus       118 ~k~~~~  123 (326)
T KOG0473|consen  118 QKKTEF  123 (326)
T ss_pred             hccCcc
Confidence            555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.37  E-value=0.043  Score=25.62  Aligned_cols=19  Identities=47%  Similarity=0.622  Sum_probs=10.3

Q ss_pred             CCCCEEEcccCccccchhh
Q psy3785          75 TNLNELALNNNQLEMINEA   93 (184)
Q Consensus        75 ~~L~~L~l~~n~l~~~~~~   93 (184)
                      ++|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.37  E-value=0.043  Score=25.62  Aligned_cols=19  Identities=47%  Similarity=0.622  Sum_probs=10.3

Q ss_pred             CCCCEEEcccCccccchhh
Q psy3785          75 TNLNELALNNNQLEMINEA   93 (184)
Q Consensus        75 ~~L~~L~l~~n~l~~~~~~   93 (184)
                      ++|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3455555555555555543

>KOG0473|consensus

Probab=93.50  E-value=0.0012  Score=48.66  Aligned_cols=87  Identities=16%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             ccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEE
Q psy3785          48 SEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLN  127 (184)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~  127 (184)
                      +..+...+.||++.|++-.+...++.++.+..++++.|.+..+|..+.....+..+.+-.|..+..|..++..+.++.++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            34455666667766666655555666666666677777666666666666666666666666666666666666777766


Q ss_pred             ccCCCCC
Q psy3785         128 ISNNKIE  134 (184)
Q Consensus       128 l~~n~l~  134 (184)
                      +..|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            6666544

>KOG4308|consensus

Probab=92.07  E-value=0.003  Score=51.77  Aligned_cols=140  Identities=21%  Similarity=0.237  Sum_probs=76.6

Q ss_pred             cccCCCcCccccEEEeecCCCCCCC---CcccccCC-CCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCccc-
Q psy3785          19 LVGSASASALLYTYEISSDTGSGES---NMSQSEPV-LKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLE-   88 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~l-~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~-   88 (184)
                      +...+...+.|..++++.|.+.+..   +...+... ..+++|.+..|.++.     +...+....+++.+++..|.+. 
T Consensus       107 l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~  186 (478)
T KOG4308|consen  107 LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIE  186 (478)
T ss_pred             HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccch
Confidence            3344456777777888888776533   22223332 446667777776664     3455555667777777777653 


Q ss_pred             ----cchhhh----cCCCCceEEEccccccccc-----hhhhcCCCC-CCEEEccCCCCCCc-----chhhhcC-CCCCE
Q psy3785          89 ----MINEAV----YDLPHLYKFNVSNNMIAKI-----SDNIGNLTS-LLVLNISNNKIESL-----PENIGYM-KSLTH  148 (184)
Q Consensus        89 ----~~~~~~----~~l~~l~~L~l~~n~~~~~-----~~~~~~~~~-L~~l~l~~n~l~~l-----~~~~~~~-~~L~~  148 (184)
                          .++..+    ....++++|++..+.++..     ...+...+. +..+++..|.+.+.     .+.+... +.++.
T Consensus       187 ~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~  266 (478)
T KOG4308|consen  187 LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRV  266 (478)
T ss_pred             hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhh
Confidence                112222    2355677777777776521     112333333 44466666665522     1223333 45566


Q ss_pred             EeccCCCCCC
Q psy3785         149 IDASHNTISY  158 (184)
Q Consensus       149 l~L~~n~l~~  158 (184)
                      ++++.|.|+.
T Consensus       267 l~l~~nsi~~  276 (478)
T KOG4308|consen  267 LDLSRNSITE  276 (478)
T ss_pred             hhhhcCCccc
Confidence            6677776665

>KOG4308|consensus

Probab=91.64  E-value=0.0036  Score=51.36  Aligned_cols=132  Identities=24%  Similarity=0.301  Sum_probs=64.3

Q ss_pred             ccccEEEeecCCCCCCC---CcccccCCCCccEEEecCCcccc-----Cchhhh----CCCCCCEEEcccCccccc----
Q psy3785          27 ALLYTYEISSDTGSGES---NMSQSEPVLKLKVLNLQYNNLKG-----LPDEIR----HLTNLNELALNNNQLEMI----   90 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~----~l~~L~~L~l~~n~l~~~----   90 (184)
                      ..++++++..|..+...   +...+.....++.++++.|.+..     ++..+.    ...++++|.+.+|.++..    
T Consensus       144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~  223 (478)
T KOG4308|consen  144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL  223 (478)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence            34455555555544322   33344445556666666665532     222333    244566666666665521    


Q ss_pred             -hhhhcCCCC-ceEEEccccccccc-----hhhhcCC-CCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCC
Q psy3785          91 -NEAVYDLPH-LYKFNVSNNMIAKI-----SDNIGNL-TSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTIS  157 (184)
Q Consensus        91 -~~~~~~l~~-l~~L~l~~n~~~~~-----~~~~~~~-~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~  157 (184)
                       ...+...+. +..+++..|.+...     .+.+..+ ++++.+++..|.+++     +...+..++.++.+.+++|.+.
T Consensus       224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence             122222333 44466666655521     2233333 455666666666652     2233445556666666666665


Q ss_pred             C
Q psy3785         158 Y  158 (184)
Q Consensus       158 ~  158 (184)
                      .
T Consensus       304 ~  304 (478)
T KOG4308|consen  304 D  304 (478)
T ss_pred             c
Confidence            5

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.67  E-value=0.36  Score=22.70  Aligned_cols=17  Identities=47%  Similarity=0.728  Sum_probs=9.6

Q ss_pred             CccEEEecCCccccCch
Q psy3785          53 KLKVLNLQYNNLKGLPD   69 (184)
Q Consensus        53 ~L~~L~l~~n~l~~lp~   69 (184)
                      +|++|++++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45556666666655553

>KOG1947|consensus

Probab=87.57  E-value=0.25  Score=40.10  Aligned_cols=58  Identities=22%  Similarity=0.246  Sum_probs=24.8

Q ss_pred             CCCCCEEEcccCc-cccch-hhhc-CCCCceEEEccccc-cc--cchhhhcCCCCCCEEEccCC
Q psy3785          74 LTNLNELALNNNQ-LEMIN-EAVY-DLPHLYKFNVSNNM-IA--KISDNIGNLTSLLVLNISNN  131 (184)
Q Consensus        74 l~~L~~L~l~~n~-l~~~~-~~~~-~l~~l~~L~l~~n~-~~--~~~~~~~~~~~L~~l~l~~n  131 (184)
                      +..++.++++++. ++... ..+. .+++|+.|.+..+. ++  .+......++.|+.++++++
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            3445555555554 33211 1111 24455555544443 33  12222334455555555544

>KOG1947|consensus

Probab=85.39  E-value=0.59  Score=37.97  Aligned_cols=108  Identities=21%  Similarity=0.136  Sum_probs=72.3

Q ss_pred             CCCCccEEEecCC-cccc--CchhhhCCCCCCEEEcccC--ccccch----hhhcCCCCceEEEccccc-cccc--hhhh
Q psy3785          50 PVLKLKVLNLQYN-NLKG--LPDEIRHLTNLNELALNNN--QLEMIN----EAVYDLPHLYKFNVSNNM-IAKI--SDNI  117 (184)
Q Consensus        50 ~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~l~~n--~l~~~~----~~~~~l~~l~~L~l~~n~-~~~~--~~~~  117 (184)
                      ..+.++.+.+.++ .+..  +-......+.|+.|+++++  .++..+    .....+.+++.++++++. ++..  ..-.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            3678888888877 4444  3344566788999999873  222111    222245788999999887 6633  2223


Q ss_pred             cCCCCCCEEEccCCC-CC--CcchhhhcCCCCCEEeccCCCCC
Q psy3785         118 GNLTSLLVLNISNNK-IE--SLPENIGYMKSLTHIDASHNTIS  157 (184)
Q Consensus       118 ~~~~~L~~l~l~~n~-l~--~l~~~~~~~~~L~~l~L~~n~l~  157 (184)
                      ..|+.|+.+.+.++. ++  .+......++.|+.++++.+...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            348899999987776 55  44455677889999999988553

>KOG3864|consensus

Probab=82.86  E-value=0.26  Score=35.78  Aligned_cols=80  Identities=18%  Similarity=0.217  Sum_probs=49.7

Q ss_pred             CCccEEEecCCccccC-chhhhCCCCCCEEEcccCc-cccch-hhhc-CCCCceEEEccccc-cccch-hhhcCCCCCCE
Q psy3785          52 LKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQ-LEMIN-EAVY-DLPHLYKFNVSNNM-IAKIS-DNIGNLTSLLV  125 (184)
Q Consensus        52 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~-l~~~~-~~~~-~l~~l~~L~l~~n~-~~~~~-~~~~~~~~L~~  125 (184)
                      ..++.++-+++.+... -+.+.+++.++.|.+.+|. +..+. ..+. ..++|+.|++++|. ||.-. ..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            3466677777776653 2456777778888877773 54332 2233 35688888888774 66432 45666677777


Q ss_pred             EEccCC
Q psy3785         126 LNISNN  131 (184)
Q Consensus       126 l~l~~n  131 (184)
                      +.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            666543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.23  E-value=0.78  Score=20.71  Aligned_cols=13  Identities=54%  Similarity=0.774  Sum_probs=4.9

Q ss_pred             CCCEEEcccCccc
Q psy3785          76 NLNELALNNNQLE   88 (184)
Q Consensus        76 ~L~~L~l~~n~l~   88 (184)
                      +|++|++++|.++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>KOG3864|consensus

Probab=81.10  E-value=0.69  Score=33.63  Aligned_cols=77  Identities=16%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             CCCEEEcccCccccch-hhhcCCCCceEEEccccc-cccc-hhhh-cCCCCCCEEEccCC-CCCCcc-hhhhcCCCCCEE
Q psy3785          76 NLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNM-IAKI-SDNI-GNLTSLLVLNISNN-KIESLP-ENIGYMKSLTHI  149 (184)
Q Consensus        76 ~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~-~~~~-~~~~-~~~~~L~~l~l~~n-~l~~l~-~~~~~~~~L~~l  149 (184)
                      .++.++-+++.|.... ..+.+++.++.+.+.++. +..- -+.+ +-.++|+.|++++| .|++-. ..+..+++|+.+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4455555555554332 334445555555555543 2210 1111 12355666666655 344221 124445555555


Q ss_pred             ecc
Q psy3785         150 DAS  152 (184)
Q Consensus       150 ~L~  152 (184)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.42  E-value=1.7  Score=20.40  Aligned_cols=16  Identities=31%  Similarity=0.501  Sum_probs=11.3

Q ss_pred             CCCCEEeccCCCCCCC
Q psy3785         144 KSLTHIDASHNTISYV  159 (184)
Q Consensus       144 ~~L~~l~L~~n~l~~~  159 (184)
                      ++|+.++++.|.|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4677777777777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 90  INEAVYDLPHLYKFNVSNNMI-AKISDNIGNLTSLLVLNISNNKIES-LPENIGYMKSLT 147
           I + +  +P+L+  N+ +N I   I D +G+L  L +L++S+NK++  +P+ +  +  LT
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 148 HIDASHNTISYVPWKLFSKFHQNRSSRF 175
            ID S+N +S  P     +F     ++F
Sbjct: 705 EIDLSNNNLSG-PIPEMGQFETFPPAKF 731

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 90  INEAVYDLPHLYKFNVSNNMI-AKISDNIGNLTSLLVLNISNNKIES-LPENIGYMKSLT 147
           I + +  +P+L+  N+ +N I   I D +G+L  L +L++S+NK++  +P+ +  +  LT
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 148 HIDASHNTISYVPWKLFSKFHQNRSSRF 175
            ID S+N +S  P     +F     ++F
Sbjct: 708 EIDLSNNNLSG-PIPEMGQFETFPPAKF 734

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 93  AVYD-LPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHI 149
            V+D L +L +  +  N +  + D +   LT+L  LN+++N+++SLP+ +   + +LT +
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 150 DASHNTISYVPWKLFSKFHQNRSSRF 175
           D S+N +  +P  +F K  Q +  R 
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRL 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 4e-22
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
                L L+   L   PD+   L++L  + ++   L  + + +     L    ++ N + 
Sbjct: 81  PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR 140

Query: 112 KISDNIGNLTSLLVLNIS-NNKIESLPENIG---------YMKSLTHIDASHNTISYVP 160
            +  +I +L  L  L+I    ++  LPE +           + +L  +      I  +P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLT--NLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
             ++       LK   D +   T      L L +  L    +  + L HL    +    +
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
            ++ D +     L  L ++ N + +LP +I  +  L  +     
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 2e-20
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMI---------NEAVYDLPHLYK 102
            L+ L L  N L+ LP  I  L  L EL++    +L  +         +     L +L  
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
             +    I  +  +I NL +L  L I N+ + +L   I ++  L  +D    
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 4e-20
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMINEAVYDLPHLYKFNVSN-NMI 110
            LK L ++ + L  L   I HL  L EL L     L            L +  + + + +
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 111 AKISDNIGNLTSLLVLNISNN-KIESLPENIGYMKSLTHIDASHNTISYVP 160
             +  +I  LT L  L++     +  LP  I  + +   I    +  + + 
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 2/110 (1%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDL--PHLYKFNVSNNMI 110
           + +       N         +  N          L+   + + D   P      + +  +
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            +  D    L+ L  + I    +  LP+ +     L  +  + N +  +P
Sbjct: 94  PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP 143

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 53  KLKVLNLQYNN-LKGLPDEIRHLTNLNELAL-NNNQLEMINEAVYDLPHLYKFNVSNN-M 109
           KL+ L+L+    L+  P        L  L L + + L  +   ++ L  L K ++     
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPEN 139
           ++++   I  L +  ++ +  +    L ++
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 6/100 (6%), Positives = 25/100 (25%), Gaps = 6/100 (6%)

Query: 64  LKGLPDEIRHLTNLNELALNN-NQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTS 122
           +        H +    L       L   ++ +      Y  + +       +    N  +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW---HSAWRQANSNN 57

Query: 123 LLVLNISNNKIESLPENIGY--MKSLTHIDASHNTISYVP 160
             +   +   +++  + +          ++     +   P
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP 97

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
           LKL  L +    L G+P ++     LNEL L++N+++ I          LY+  + +N I
Sbjct: 172 LKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
             I +     L +L  L++ NNK+  +P  +  +K L  +    N I+ V    F 
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI- 110
           KL+ L +  N+L  +P  +   ++L EL +++N++  + + V   L ++    +  N + 
Sbjct: 103 KLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 111 -AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
            +       +   L  L IS  K+  +P+++   ++L  +   HN I  +  +   ++ +
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSK 218

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            L  L L  N +  + ++    L  L +L ++ N L  I   +     L +  + +N I 
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIR 136

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENIGYMK--SLTHIDASHNTISYVPWKLFSKFH 168
           K+   +   L ++  + +  N +E+     G      L ++  S   ++ +P  L    +
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196

Query: 169 Q 169
           +
Sbjct: 197 E 197

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIAK 112
           L+V+      LK +P EI    +   L L NN +  + +     L HLY   + NN I+K
Sbjct: 35  LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           I +     L  L  L IS N +  +P N+    SL  +    N I  VP  +FS    
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.8 bits (207), Expect = 2e-19
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 23/131 (17%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLN-----------------ELALNNNQLEMINEAVY 95
            L+ L++  N L  LP     L  L                  EL ++ N+L  +     
Sbjct: 182 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV--- 238

Query: 96  DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNT 155
               L +  VS N +  +      L SL   ++  N++  LPE++ ++ S T ++   N 
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPSGLLSL---SVYRNQLTRLPESLIHLSSETTVNLEGNP 295

Query: 156 ISYVPWKLFSK 166
           +S    +   +
Sbjct: 296 LSERTLQALRE 306

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDL--------------P 98
           +L+ L +  N L  LP     L  L+  +     L  +   +  L              P
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP 141

Query: 99  HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
            L + +VS+N +A +      L     L   NN++ SLP        L  +  S N ++ 
Sbjct: 142 GLQELSVSDNQLASLPALPSELCK---LWAYNNQLTSLPMLPS---GLQELSVSDNQLAS 195

Query: 159 VP 160
           +P
Sbjct: 196 LP 197

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.5 bits (183), Expect = 3e-16
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 12/107 (11%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           L+ L++  N L  LP     L  L      NNQL  +         L + +VS+N +A +
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLW---AYNNQLTSLPM---LPSGLQELSVSDNQLASL 196

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
                 L     L   NN++ SLP        L  +  S N ++ +P
Sbjct: 197 PTLPSELYK---LWAYNNRLTSLPALPS---GLKELIVSGNRLTSLP 237

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.8 bits (181), Expect = 6e-16
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  L +  N L  LP     L  L+   +++NQL  +         L K    NN +  
Sbjct: 122 GLCKLWIFGNQLTSLPVLPPGLQELS---VSDNQLASLPA---LPSELCKLWAYNNQLTS 175

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           +      L  L   ++S+N++ SLP        L  + A +N ++ +P
Sbjct: 176 LPMLPSGLQEL---SVSDNQLASLPTLPS---ELYKLWAYNNRLTSLP 217

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.0 bits (179), Expect = 1e-15
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 12/108 (11%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            +  L +  NNL  LP     L  L    ++ NQL  +      L  L  F+        
Sbjct: 62  HITTLVIPDNNLTSLPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLT---H 115

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           +      L     L I  N++ SLP        L  +  S N ++ +P
Sbjct: 116 LPALPSGLCK---LWIFGNQLTSLPVLPP---GLQELSVSDNQLASLP 157

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.7 bits (160), Expect = 4e-13
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 74  LTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI 133
                 L +  + L  + + +    H+    + +N +  +      L +L    +S N++
Sbjct: 39  NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTL---EVSGNQL 93

Query: 134 ESLPENIGYMKSLTHIDASHNTISYVPWKL 163
            SLP     +  L+        +  +P  L
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALPSGL 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 28/120 (23%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +LK L +  N L  LP     L +L+   +  NQL         LP              
Sbjct: 242 ELKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLT-------RLP-------------- 277

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
             +++ +L+S   +N+  N +         ++ +T        I        S   + R+
Sbjct: 278 --ESLIHLSSETTVNLEGNPLSERTLQA--LREITSAPGYSGPIIRFDMAGASAPRETRA 333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 6e-19
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
           KL +L   YN L+G          L  L L  NQ+  I          +   + ++N + 
Sbjct: 331 KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390

Query: 112 KISDN--IGNLTSLLVLNISNNKIES--------LPENIGYMKSLTHIDASHNTISYVPW 161
            I +     +++ +  ++ S N+I S        L        +++ I+ S+N IS  P 
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 162 KLFSK 166
           +LFS 
Sbjct: 451 ELFST 455

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 53  KLKVLNLQYNNLKGL--PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
           K++++ + YNNLK       ++ +  L  L    NQLE    A      L   N++ N I
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFSKF 167
            +I  N  G    +  L+ ++NK++ +P       +  ++ ID S+N I  V  K F   
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 11/114 (9%)

Query: 52  LKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQL--------EMINEAVYDLPHLYK 102
           + +  +NL  N +   P E+    + L+ + L  N L        +  NE   +   L  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 103 FNVSNNMIAKISDNI--GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
            ++  N + K+SD+     L  L+ +++S N     P       +L      + 
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 53  KLKVLNLQYNNLKGLP--------DEIRHLTNLNELALNNNQLEMINE--AVYDLPHLYK 102
            L  +NL  N L  +P        +  ++   L  + L  N+L  +++      LP+L  
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNIS-------NNKIESLPENIGYMKSLTHIDASHNT 155
            ++S N  +K      N ++L    I        N  +   PE I    SLT +    N 
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 156 ISYVPWKLFSK 166
           I  V  K+   
Sbjct: 578 IRKVNEKITPN 588

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 12/125 (9%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSNNM 109
           KL  LNL YN +  +P         +  L+  +N+L+ I        +  +   + S N 
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 110 IAKISDN--------IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
           I  +                ++  +N+SNN+I   P+ +      L+ I+   N ++ +P
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 161 WKLFS 165
                
Sbjct: 474 KNSLK 478

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 12/126 (9%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYD---------LPHLYK 102
            L  + +        LP  ++ L  +  + +  N+     +   D            +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 103 FNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
             +  N +    +  ++  +  L +L    N++E      G    L  ++ ++N I+ +P
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIP 369

Query: 161 WKLFSK 166
                 
Sbjct: 370 ANFCGF 375

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 18/115 (15%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  ++L YN+    P +  + + L    + N +                    N  + +
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA----------------QGNRTLRE 557

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
             + I    SL  L I +N I  + E I    +++ +D   N    +       +
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
           LK   +    NN+  +   +  LT L +  + N+          ++  +           
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-- 240

Query: 111 AKISDNIGNLTSLLVLNIS-NNKIESLPENIGYMKSLTHIDASHNTISYVP 160
                   NL  L  + +     +  LP  +  +  +  I+ + N      
Sbjct: 241 --EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 13/116 (11%)

Query: 53  KLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQL------EMINEAVYDLPHLY 101
           +L+VL L  +  K       P  I    +  +                  E   DL    
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
               S+     I  +         +   +N I  + + +  +  L      ++   
Sbjct: 166 --INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 57  LNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS- 114
            + Q N      P+ I    +L +L + +N +  +NE +   P++   ++ +N    I  
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDL 604

Query: 115 DNIGNLTSLLVLNISNNKIESLP 137
             +       +  +  +K + + 
Sbjct: 605 SYVCPYIEAGMYMLFYDKTQDIR 627

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 2e-18
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
           +L +L LQ+NNL      + +   L E+ L+ N+LE I       +  L +  +SNN + 
Sbjct: 227 ELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
            ++     + +L VL++S+N +  +  N      L ++   HN+I  +       
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.7 bits (197), Expect = 4e-18
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            L  ++L YN L+ +       +  L  L ++NN+L  +N     +P L   ++S+N + 
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 308

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
            +  N      L  L + +N I +L  +     +L ++  SHN    
Sbjct: 309 HVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDC 353

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 5e-17
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMI 110
             K++  + + ++ LP  +      +  L LN+ Q+E I+   +     + K  +  N I
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
             +  ++  N+  L VL +  N + SLP  I      LT +  S+N +  +    F 
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.2 bits (188), Expect = 5e-17
 Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 4/118 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
           ++++LNL    ++ +      +   + +L +  N +  +   V  ++P L    +  N +
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
           + +   I  N   L  L++SNN +E + ++      SL ++  S N +++V   L   
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS 187

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 28/110 (25%), Positives = 58/110 (52%), Gaps = 9/110 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
           KL  L++  NNL+ + D+  +  T+L  L L++N+L  ++ ++  +P L+  NVS N+++
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLS 199

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
            ++       ++  L+ S+N I  +   +     LT +   HN ++   W
Sbjct: 200 TLA----IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW 243

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 57  LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISD 115
           +++Q  ++    ++I  L N   +   N+ +  +    +     +   N+++  I +I  
Sbjct: 28  IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 116 NI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
                  ++  L +  N I  LP ++   +  LT +    N +S +P  +F  
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 74  LTNLNELALNNNQLEMINEAVY------DLPHLYKFNVSNNMIAKISDNI-GNLTSLLVL 126
                +    +  ++M  + VY       L +       N+ + K+   +  +   + +L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 127 NISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           N+++ +IE +      Y  ++  +    N I Y+P  +F     
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.8 bits (199), Expect = 2e-18
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 10/118 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ +N   N L  LP+    L  L+   + NNQL  + E       L   +VS N++  
Sbjct: 141 LLEYINADNNQLTMLPELPTSLEVLS---VRNNQLTFLPEL---PESLEALDVSTNLLES 194

Query: 113 ISDNIGNLTSL----LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
           +              +      N+I  +PENI  +     I    N +S    +  S+
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.9 bits (189), Expect = 5e-17
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +   L L   NL  LPD +     +  L +  N L  + E    L +L   +  +N ++ 
Sbjct: 60  QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPELPASLEYL---DACDNRLST 114

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
           + +   +L  L   ++ NN++  LPE       L +I+A +N ++ +P   
Sbjct: 115 LPELPASLKHL---DVDNNQLTMLPELPA---LLEYINADNNQLTMLPELP 159

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 7e-17
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            LK L++  N L  LP+    L  +N    +NNQL M+ E       L   +V NN +  
Sbjct: 121 SLKHLDVDNNQLTMLPELPALLEYIN---ADNNQLTMLPEL---PTSLEVLSVRNNQLTF 174

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLT----HIDASHNTISYVP 160
           + +   +L     L++S N +ESLP                    N I+++P
Sbjct: 175 LPELPESLE---ALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP 223

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 7e-16
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           K  +     N    L  E   +   +EL LN   L  + + +   P +    ++ N +  
Sbjct: 38  KQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS 94

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           + +   +L  L   +  +N++ +LPE      SL H+D  +N ++ +P
Sbjct: 95  LPELPASLEYL---DACDNRLSTLPELPA---SLKHLDVDNNQLTMLP 136

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 1e-15
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 7/131 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHL----YKFNVSNN 108
            L+VL+++ N L  LP+    L  L+   ++ N LE +        H       F    N
Sbjct: 161 SLEVLSVRNNQLTFLPELPESLEALD---VSTNLLESLPAVPVRNHHSEETEIFFRCREN 217

Query: 109 MIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFH 168
            I  I +NI +L     + + +N + S        ++             +     +  H
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

Query: 169 QNRSSRFGCAL 179
           +  +       
Sbjct: 278 RPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 3e-12
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 57  LNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD--LPHLYKFNVSNNMIAKI 113
            N  YN + G   +         + AL           + +  +    +  ++   ++ +
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            DN+     + VL I+ N + SLPE      SL ++DA  N +S +P
Sbjct: 75  PDNLP--PQITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP 116

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.7 bits (199), Expect = 2e-18
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 52  LKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY--------DLPHLYK 102
           +    + L YN ++  P E+    + ++ + L+NN +  I E           +   L  
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 103 FNVSNNMIAKISDNI--GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
            ++  N +  +SD+     L  L  +++S N   S P        L      H 
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.9 bits (197), Expect = 6e-18
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 53  KLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
           K+++  + YNNL+  P    ++ +  L  L   +N++  + EA      L    +  N I
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNVKLTDLKLDYNQI 607

Query: 111 AKISDNIG-NLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVPWKLFSKF 167
            +I ++       +  L  S+NK++ +P   N   +  +  +D S+N I      +    
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 168 HQNRSSR 174
              +   
Sbjct: 668 DDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 14/121 (11%)

Query: 53  KLKVLNLQYNNLKG----------LPDEIRHLTNLNELALNNNQLEMI--NEAVYDLPHL 100
           +L+ LN+  N              L D+      +    +  N LE    + ++  +  L
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575

Query: 101 YKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY-MKSLTHIDASHNTISYV 159
              +  +N +  +    G    L  L +  N+IE +PE+       +  +  SHN + Y+
Sbjct: 576 GLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 160 P 160
           P
Sbjct: 635 P 635

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.4 bits (193), Expect = 2e-17
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 10/123 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
           KL +L+  +N ++ L         L +L L+ NQ+E I  +       +     S+N + 
Sbjct: 574 KLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 112 KISD--NIGNLTSLLVLNISNNKIESLPENIG------YMKSLTHIDASHNTISYVPWKL 163
            I +  N  ++  +  ++ S NKI S   NI          + + +  S+N I   P +L
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 164 FSK 166
           F+ 
Sbjct: 693 FAT 695

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.6 bits (191), Expect = 3e-17
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 17/131 (12%)

Query: 53  KLKVLNLQYNNLKGLPDE--------IRHLTNLNELALNNNQLEMINE--AVYDLPHLYK 102
            +  + L  N +  +P+          ++   L  + L  N+L  +++      LP+L  
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNIS-------NNKIESLPENIGYMKSLTHIDASHNT 155
            +VS N  +       N + L    I        N  +   P  I    SL  +    N 
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 156 ISYVPWKLFSK 166
           I  V  KL  +
Sbjct: 818 IRKVDEKLTPQ 828

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 3e-16
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 14/131 (10%)

Query: 44  NMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELAL-NNNQLEMINEAVYDLPHLY 101
             +     +  +  N  Y            +L +L ++ L N   +  + + +YDLP L 
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 102 KFNVSNNMI----------AKISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHI 149
             N++ N             +++D+      + +  +  N +E  P +  +  M  L  +
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 150 DASHNTISYVP 160
           D  HN + ++ 
Sbjct: 579 DCVHNKVRHLE 589

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 3e-16
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY--DLPHLYKFNVSNNM 109
           KL  L L YN ++ +P++       +  L  ++N+L+ I        +  +   + S N 
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 110 IAKISDNIG------NLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWK 162
           I     NI          +   + +S N+I+  P  +      ++ I  S+N ++ +P  
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 163 LFS 165
              
Sbjct: 716 SLK 718

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.7 bits (173), Expect = 7e-15
 Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 18/123 (14%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  +++ YN     P +  + + L    + + +                    N ++ +
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR----------------DAEGNRILRQ 797

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
               I    SL+ L I +N I  + E +     L  +D + N    +       + +   
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 173 SRF 175
              
Sbjct: 856 YVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 6e-14
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 31/140 (22%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNV------ 105
           LK   +    N +  +   I+ LT L  +   N+     N AV        +        
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484

Query: 106 ---------------SNNMIAKISDNIGNLTSLLVLNISNNKIES----------LPENI 140
                          +   + ++ D + +L  L  LNI+ N+  S          L ++ 
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544

Query: 141 GYMKSLTHIDASHNTISYVP 160
                +      +N +   P
Sbjct: 545 DTGPKIQIFYMGYNNLEEFP 564

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 33/141 (23%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQL------------------------ 87
           ++  L+L     KG +PD I  LT L  L+   +                          
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 88  --EMINEAVYDLPHLYKFNVSNNMIAK------ISDNIGNLTSLLVLNISNNKIESLPEN 139
                   +     L   ++  + I +      I  +         +    N+I  + + 
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443

Query: 140 IGYMKSLTHIDASHNTISYVP 160
           I  +  L  I  +++  +Y  
Sbjct: 444 IQRLTKLQIIYFANSPFTYDN 464

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 22/158 (13%), Positives = 39/158 (24%), Gaps = 54/158 (34%)

Query: 53  KLKVLNLQYNNLKGLPDEI--------------------------RHLTNLNELALNNNQ 86
           +LKVL+   ++                                   +   LN   L  + 
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407

Query: 87  LEMINEAVY-------DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI------ 133
           +    E           L          N I  IS  I  LT L ++  +N+        
Sbjct: 408 INRNPEMKPIKKDSRISLKDTQ-IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 134 --------------ESLPENIGYMKSLTHIDASHNTIS 157
                         E+   +   +K LT ++  +    
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.9 bits (197), Expect = 2e-18
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
            L  L L +N+L  +  E    + NL  L L++N L  ++E +  DL  L    + NN I
Sbjct: 65  NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDASHNTISYVPWKLFS 165
             +  N   ++  L  L +S N+I   P     +   +  L  +D S N +  +P     
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.1 bits (195), Expect = 5e-18
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 54  LKVLNLQYNNLKGLPDEI--RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
             +L+L +NNL  L  E     LTNL+ L L++N L  I+   +  +P+L   ++S+N +
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
             + + +  +L +L VL + NN I  +  N    M  L  +  S N IS  P +L  
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD----LPHLYKFNVSN 107
            L+VL L  N++  +       +  L +L L+ NQ+      +      LP L   ++S+
Sbjct: 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 108 NMIAKISDN-IGNLTSL--LVLNISNN 131
           N + K+    +  L +     L + NN
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 98  PHLYKFNVSNNMIAKISDNI--GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHN 154
            +    ++S+N ++++        LT+L  L +S+N +  +       + +L ++D S N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 155 TISYVPWKLFSK 166
            +  +   LFS 
Sbjct: 99  HLHTLDEFLFSD 110

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.4 bits (196), Expect = 8e-18
 Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI--RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNM 109
           +L+ L+ Q++NLK + +      L NL  L +++    +    +++ L  L    ++ N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 110 IAKI--SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
             +    D    L +L  L++S  ++E L       + SL  ++ + N +  VP  +F +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 167 FHQ 169
              
Sbjct: 517 LTS 519

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 4e-16
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 5/122 (4%)

Query: 53  KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
           +L+VL+L    ++ + D   + L++L+ L L  N ++ +    +  L  L K       +
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 111 AKISDN-IGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
           A + +  IG+L +L  LN+++N I+S   PE    + +L H+D S N I  +        
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 168 HQ 169
           HQ
Sbjct: 173 HQ 174

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI---NEAVYDLPHLYKFNVSNNMI 110
           LK L    N       E+  L +L  L L+ N L      +++ +    L   ++S N +
Sbjct: 327 LKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENI--GYMKSLTHIDASHNTISYVPWKLFSKFH 168
             +S N   L  L  L+  ++ ++ + E      +++L ++D SH         +F+   
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 169 Q 169
            
Sbjct: 446 S 446

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY--DLPHLYKFNVSNNMI 110
            LK L+L +N +  +      L  L  L   ++ L+ ++E      L +L   ++S+   
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 111 AKISDNI-GNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
               + I   L+SL VL ++ N  +   LP+    +++LT +D S   +  +    F+  
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 168 HQ 169
             
Sbjct: 494 SS 495

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.5 bits (173), Expect = 8e-15
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
            K L+L +N L+ L          L  L L+  +++ I + A   L HL    ++ N I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVP 160
            ++      L+SL  L      + SL    IG++K+L  ++ +HN I    
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
            L  L L  N ++ L       L++L +L      L  + N  +  L  L + NV++N+I
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 111 AKIS--DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLT----HIDASHNTISYVPWKL 163
                 +   NLT+L  L++S+NKI+S+    +  +  +      +D S N ++++    
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 164 FSKFH 168
           F +  
Sbjct: 197 FKEIR 201

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
              + L L        P     L +L  L   +N+       V DLP L   ++S N ++
Sbjct: 304 FGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLS 360

Query: 112 KI---SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
                S +    TSL  L++S N + ++  N   ++ L H+D  H+ +  + 
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 53  KLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
            L+VL +  N+ +   LPD    L NL  L L+  QLE +   A   L  L   N+++N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENIGYM 143
           +  + D I   LTSL  + +  N  +     I Y+
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 25/116 (21%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
                   N   +PD +    +   L L+ N L  +                       S
Sbjct: 10  ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLG----------------------S 45

Query: 115 DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
            +  +   L VL++S  +I+++ +     +  L+ +  + N I  +    FS    
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 13/122 (10%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL--EMINEAVYDLPHL------YKF 103
           L    L+L  N +  +         L++L L NN     ++   +  L  L         
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 104 NVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGY----MKSLTHIDASHNTISY 158
             +   + K   +    L +L +       ++   ++I      + +++       TI  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 159 VP 160
           V 
Sbjct: 297 VK 298

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 8e-18
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIA 111
           KL  + +   N+  +P  +    +L EL L+ N++  ++ A    L +L K  +S N I+
Sbjct: 172 KLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
            + +    N   L  L+++NNK+  +P  +   K +  +   +N IS +    F
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI- 110
           KL+ L L  N LK LP+++     L EL ++ N++  + ++V   L  +    +  N + 
Sbjct: 101 KLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 111 -AKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFH 168
            + I +     +  L  + I++  I ++P+ +    SLT +    N I+ V        +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 216

Query: 169 Q 169
            
Sbjct: 217 N 217

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.9 bits (164), Expect = 9e-14
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            L  L L +N++  + +    +  +L EL LNNN+L  +   + D  ++    + NN I+
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276

Query: 112 KISDN-------IGNLTSLLVLNISNNKIE--SLPENI-GYMKSLTHIDASHN 154
            I  N            S   +++ +N ++   +  +    +     +   + 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            L  L L  N +  +       L  L  L L+ NQL+ + E +     L +  V  N I 
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEIT 134

Query: 112 KISDNI-GNLTSLLVLNISNNKIES--LPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
           K+  ++   L  ++V+ +  N ++S  +       MK L++I  +   I+ +P  L   
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.6 bits (158), Expect = 6e-13
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 53  KLKVLNLQYNNLK--GLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
           ++ V+ L  N LK  G+ +   + +  L+ + + +  +  I + +   P L + ++  N 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK 203

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
           I K+       L +L  L +S N I ++          L  +  ++N +  VP  L  
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI---NEAVYDLPHLYKFNVSNNM 109
           L+ L +  N +  +   +   L  +  + L  N L+     N A   +  L    +++  
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
           I  I    G   SL  L++  NKI  +       + +L  +  S N+IS V     +
Sbjct: 183 ITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
           L+V+      L+ +P ++    +   L L NN++  I +  +  L +L+   + NN I+K
Sbjct: 33  LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
           IS      L  L  L +S N+++ LPE +   K+L  +    N I+ V   +F+
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFN 142

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY-------DLPHLYKFNV 105
            L+ L+L  N L  +P  +     +  + L+NN +  I    +               ++
Sbjct: 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

Query: 106 SNNMI--AKISDNI-GNLTSLLVLNISNNK 132
            +N +   +I  +    +     + + N K
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.6 bits (193), Expect = 1e-17
 Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
           +VL+L + +L  L   +  L  +  L L++N+L  +  A+  L  L     S+N +  + 
Sbjct: 444 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV- 501

Query: 115 DNIGNLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVP 160
           D + NL  L  L + NN+++       +     L  ++   N++    
Sbjct: 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 1e-14
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            +  L+L +N L+ LP  +  L  L  L  ++N LE ++  V +LP L +  + NN + +
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQ 522

Query: 113 ISD--NIGNLTSLLVLNISNNKIESLPENIGYMKSL 146
            +    + +   L++LN+  N +         +  +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 3e-14
 Identities = 19/118 (16%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 43  SNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102
           S +   +P+    + +L+   L           ++  L L +  L ++   +  L  +  
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTH 467

Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            ++S+N +  +   +  L  L VL  S+N +E++   +  +  L  +   +N +    
Sbjct: 468 LDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSA 524

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 34  ISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-- 91
              +    +S + QSE     ++  L+  N   L   I  +  L+ L      L+  +  
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411

Query: 92  EAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDA 151
           +AV  +   Y  ++ +  + + S        + VL++++  +  L  ++  +  +TH+D 
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDL 470

Query: 152 SHNTISYVPWKL 163
           SHN +  +P  L
Sbjct: 471 SHNRLRALPPAL 482

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 4/121 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
           +L  L+L    L+ L   + R L  L  L L +N L+ + +    DL +L    +  N I
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFH 168
           + + +     L SL  L +  N++  +  +    +  L  +    N +S +P +  +   
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 169 Q 169
            
Sbjct: 226 A 226

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 9/113 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L+ L LQ N L+ LPD+  R L NL  L L+ N++  + E  +  L  L +  +  N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
           A +  +   +L  L+ L +  N + +LP      +++L ++  + N     PW
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN-----PW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNM-I 110
            + + L  N +  +P    R   NL  L L++N L  I+ A    L  L + ++S+N  +
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
             +       L  L  L++    ++ L   +   + +L ++    N +  +P   F  
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELAL-NNNQLEMINEAV-YDLPHLYKFNVSNNM 109
            L +L L  N L  +       L  L +L L +N QL  ++ A  + L  L+  ++    
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
           + ++   +   L +L  L + +N +++LP++    + +LTH+    N IS VP + F   
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 168 HQ 169
           H 
Sbjct: 177 HS 178

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 57  LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISD 115
            +     L+ +P  I        + L+ N++  +   +     +L    + +N++A+I  
Sbjct: 16  TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 116 NI-GNLTSLLVLNISNN-KIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
                L  L  L++S+N ++ S+       +  L  +      +  +   LF     
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.0 bits (190), Expect = 2e-17
 Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
           + K+  +  ++LK     + +   N+ EL L+ N L  I    +     L   N+S+N++
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
            +  D + +L++L  L+++NN ++ L        S+  + A++N IS V      
Sbjct: 71  YETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQ 120

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 53  KLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            +K L+L  N L  +   ++   T L  L L++N L      +  L  L   +++NN + 
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQ 93

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
                +    S+  L+ +NN I  +  + G  +   +I  ++N I+ +         +
Sbjct: 94  ----ELLVGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSR 145

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 1/108 (0%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ LNLQYN +  +  ++     L  L L++N+L  +         +   ++ NN +  
Sbjct: 170 TLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           I   +    +L   ++  N          + K+      +  T+  + 
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
            ++ L+   NN+  +            + L NN++ M+ +        +   ++  N I 
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 112 KISDN--IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            ++      +  +L  LN+  N I  +   +     L  +D S N ++++ 
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMG 207

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ L+L  N ++ L        ++  L   NN +  ++ +           ++NN I  
Sbjct: 81  TLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITM 134

Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLF 164
           + D   G  + +  L++  N+I+++          +L H++  +N I  V  ++ 
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.9 bits (164), Expect = 8e-14
 Identities = 20/112 (17%), Positives = 42/112 (37%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KLK L+L  N L  +  E +    +  ++L NN+L +I +A+    +L  F++  N    
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
            +       +  V  ++   ++ L        ++  +              F
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 14/97 (14%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 66  GLPDEIRHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMIAKISDN-IGNLTSL 123
            + +  ++        + ++ L+    ++     ++ + ++S N +++IS   +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 124 LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            +LN+S+N +    + +  + +L  +D ++N +  + 
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL 96

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 7/58 (12%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           I +   N     +  ++++ ++    ++     ++  +D S N +S +     + F +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L VL++ +N L  LP    R L  L EL L  N+L+ +   +    P L K +++NN +
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
            ++   +   L +L  L +  N + ++P+       L       N     PW
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN-----PW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
            L  L+L +N L+ LP   + L  L  L ++ N+L  +       L  L +  +  N + 
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
            +   +      L  L+++NN +  LP  +   +++L  +    N++  +P   F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 6e-15
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L  LNL    L  L      L  L  L L++NQL+ +      LP L   +VS N +  
Sbjct: 56  RLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           +       L  L  L +  N++++LP  +      L  +  ++N ++ +P  L +    
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 7e-14
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 3/115 (2%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
             +L+L  N L           T L +L L+  +L  + +    LP L   ++S+N +  
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQS 91

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
           +      L +L VL++S N++ SLP      +  L  +    N +  +P  L + 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 52  LKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNM 109
           L L  L++ + NL  +P   +RHL  L  L L+ N +  I  ++ ++L  L +  +    
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTIS 157
           +A +       L  L VLN+S N++ +L E++   + +L  +    N ++
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
            ++L+L  N +K L  +      +L EL LN N +  +   A  +L +L    + +N + 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
            I   +   L++L  L+IS NKI  L + +   + +L  ++   N + Y+  + FS
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.1 bits (190), Expect = 5e-17
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L+ L L  N +  +      +L NL  L L +N+L++I   V+  L +L K ++S N I
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
             + D +  +L +L  L + +N +  +       + SL  +      ++ +P +  S
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.9 bits (187), Expect = 1e-16
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVS-NNM 109
            L+ L L+  NL  +P E   HL  L  L L +  +  I + +   L  L    +S    
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
           +  ++ N     +L  L+I++  + ++P   + ++  L  ++ S+N IS +   +  +  
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 169 Q 169
           +
Sbjct: 273 R 273

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 4e-16
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 53  KLKVLNLQYNN-LKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
           +LKVL + +   L  +     +  NL  L++ +  L  +   AV  L +L   N+S N I
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
           + I  ++   L  L  + +   ++  +       +  L  ++ S N ++ +   +F 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.6 bits (168), Expect = 4e-14
 Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIAKI 113
           + +         +P+ I   T    L L  N+++ +N+      PHL +  ++ N+++ +
Sbjct: 14  RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 114 SDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
                 NL +L  L + +N+++ +P  +   + +LT +D S N I  +   +F   + 
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 3e-17
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
            L+ LNL   NL+ +P+ +  L  L+EL L+ N L  I   +   L HL K  +  + I 
Sbjct: 186 NLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 112 KISDN-IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
            I  N   NL SL+ +N+++N +  LP ++   +  L  I   HN     PW
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN-----PW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 5e-17
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVS-NNM 109
            L  L L  N L  +P+    +L+ L EL L NN +E I       +P L + ++     
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFH 168
           ++ IS+     L++L  LN++   +  +P  +  +  L  +D S N +S +    F    
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 169 Q 169
            
Sbjct: 232 H 232

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.8 bits (184), Expect = 3e-16
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 53  KLKVLNLQ-YNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
            L+ L+L     L  + +     L+NL  L L    L  I   +  L  L + ++S N +
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL 219

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
           + I       L  L  L +  ++I+ +  N    ++SL  I+ +HN ++ +P  LF+  H
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279

Query: 169 Q 169
            
Sbjct: 280 H 280

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.0 bits (182), Expect = 4e-16
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
            L++L L  N+++ +       L NLN L L +N+L  I N A   L  L +  + NN I
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148

Query: 111 AKISDNI-GNLTSLLVLNIS-NNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
             I       + SL  L++    ++  + E     + +L +++ +   +  +P
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIA 111
            ++LNL  N ++ +     +HL +L  L L+ N +  I       L +L    + +N + 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASH-NTISYVPWKLFSK 166
            I +     L+ L  L + NN IES+P      + SL  +D      +SY+    F  
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIA 111
           +   +     NL+ +PD I   TN   L L+ NQ+++I   +   L HL    +S N I 
Sbjct: 44  QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
            I       L +L  L + +N++ ++P     Y+  L  +   +N I  +P   F+
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE--AVYDLPHLYKFNVSNNMI 110
            LK L+L +N +  +      L  L  L   ++ L+ ++E      L +L   ++S+   
Sbjct: 79  SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 111 AKISDNI-GNLTSLLVLNISNNK-IESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
               + I   L+SL VL ++ N   E+   +I   +++LT +D S   +  +    F+  
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 168 HQ 169
             
Sbjct: 199 SS 200

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI---NEAVYDLPHLYKFNVSNNM 109
              L L+ N L+ LP  +   LT L +L+L++N L      +++ +    L   ++S N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFS 165
           +  +S N   L  L  L+  ++ ++ + E      +++L ++D SH         +F+
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELAL-NNNQLEMINEAV-YDLPHLYKFNVSNNM 109
            L  L++ + + +   + I   L++L  L +  N+  E     +  +L +L   ++S   
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
           + ++S     +L+SL VLN+S+N   SL       + SL  +D S N I     +    F
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

Query: 168 HQN 170
             +
Sbjct: 247 PSS 249

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 53  KLKVLNLQYNN-LKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNM 109
            L+VL +  N+  +    +I   L NL  L L+  QLE ++      L  L   N+S+N 
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI--GYMKSLTHIDASHN 154
              +       L SL VL+ S N I +  +     +  SL  ++ + N
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.7 bits (171), Expect = 9e-15
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 53  KLKVLNLQYNNLKGL---PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
           +L  L+L  N L             T+L  L L+ N +  ++     L  L   +  ++ 
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112

Query: 110 IAKISDN--IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNT-ISYVPWKLFS 165
           + ++S+     +L +L+ L+IS+         I   + SL  +  + N+        +F+
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 166 KFHQ 169
           +   
Sbjct: 173 ELRN 176

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKI 113
             +      L  +P  I   ++   L L +N+L+ +   V+D L  L K ++S+N ++  
Sbjct: 10  TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 114 SDNIG---NLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
                     TSL  L++S N + ++  N   ++ L H+D  H+ +  + 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 117

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 4e-17
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE--AVYDLPHLYKFNVSNNM 109
             L+ L+L +N    +      L  L  L   ++ L+ + E  A   L  L   ++S   
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
                D I   LTSL  L ++ N  +   L        +LT +D S   +  + W +F  
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 167 FHQ 169
            H+
Sbjct: 496 LHR 498

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 54  LKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
            K ++L +N LK L      + + L  L L+  ++E I ++A + L HL    ++ N I 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 112 KISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVP 160
             S      LTSL  L     K+ SL    IG + +L  ++ +HN I    
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSNNM 109
           KL  L++ Y N K   D I   LT+LN L +  N  +    +    +  +L   ++S   
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
           + +IS  +   L  L +LN+S+N +  L  +    + SL+ +D S N I      L  
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 53  KLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
           +L+ L+ Q++ LK + +      L  L  L ++    ++  +     L  L    ++ N 
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 110 IAKI--SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
                 S+   N T+L  L++S  ++E +   +   +  L  ++ SHN + ++    +++
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 167 FHQ 169
            + 
Sbjct: 520 LYS 522

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)

Query: 53  KLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNM 109
            L  L +  N+ K   L +   + TNL  L L+  QLE I+  V   L  L   N+S+N 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 110 IAKISDN-IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTIS 157
           +  +  +    L SL  L+ S N+IE+    +  + KSL   + ++N+++
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            K + L++    LK  P     L  L  L L  N+  +  + V  LP L   ++S N ++
Sbjct: 307 FKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNALS 363

Query: 112 KISDNI---GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
                        SL  L++S N    +  N   ++ L H+D  H+T+  V 
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD---LPHLYKFNVSNNM 109
            LK L L  N       ++  L +L+ L L+ N L       Y       L   ++S N 
Sbjct: 329 FLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFSKF 167
              +S N   L  L  L+  ++ ++ + E      ++ L ++D S+         +F   
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 168 HQ 169
             
Sbjct: 448 TS 449

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 9/131 (6%)

Query: 53  KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMIN--EAVYDLPHLYKFNVSNNM 109
            L+ L      L  L    I  L  L +L + +N +          +L +L   ++S N 
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 110 IAKISDNI-----GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY-VPWKL 163
           I  I+ N       N    L L++S N I+ + +       L  +    N  S  +    
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 164 FSKFHQNRSSR 174
                     R
Sbjct: 225 LQNLAGLHVHR 235

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 53  KLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMI 110
            L  L+L    L+ +       L  L  L +++N L  ++ + Y  L  L   + S N I
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI 140
                 +     SL   N++NN +  + E+ 
Sbjct: 534 ETSKGILQHFPKSLAFFNLTNNSVACICEHQ 564

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 13/121 (10%)

Query: 54  LKVLNLQYNNLKGL-------PDEIRHLTNL--NELALNNNQLEMINEAV-YDLPHLYKF 103
           L V  L     K         P  +  L ++  +E  L        +    + L ++   
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
           +++   I  + D          L+I   +++  P     +  L  +  + N  S    K+
Sbjct: 291 SLAGVSIKYLEDVP-KHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKV 347

Query: 164 F 164
            
Sbjct: 348 A 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 25/116 (21%)

Query: 51  VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
           V+           L  +PD+I   ++   + L+ N L+++                    
Sbjct: 10  VVPNITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKIL-------------------- 47

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
              S +  N + L  L++S  +IE++ +     +  L+++  + N I       FS
Sbjct: 48  --KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 16/121 (13%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 52  LKLKVLNLQYNNLKG--LPDEIRHLTNLNELAL------NNNQLEMINEAVYD-LPHLYK 102
           +KL  L L+ N      +   +++L  L+   L      +   LE+   ++ + L  +  
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 103 FNVS---NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYV 159
                   N  +        L ++  ++++   I+ L +          +      +   
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRCQLKQF 322

Query: 160 P 160
           P
Sbjct: 323 P 323

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 6e-17
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 9/112 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
            LK LNL   N+K +P+ +  L  L EL ++ N    I   + + L  L K  V N+ ++
Sbjct: 197 NLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 112 KISDN-IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
            I  N    L SL+ LN+++N + SLP ++   ++ L  +   HN     PW
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN-----PW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 5e-16
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 53  KLKVLNLQ-YNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
            L  L+L     L+ + +     L NL  L L    ++ +   +  L  L +  +S N  
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230

Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
            +I       L+SL  L + N+++  +  N    + SL  ++ +HN +S +P  LF+   
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 169 Q 169
            
Sbjct: 291 Y 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
            L+VL L  N+++ +       L +LN L L +N L +I + A   L  L +  + NN I
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159

Query: 111 AKISDNI-GNLTSLLVLNIS-NNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
             I       + SL+ L++    K+E + E     + +L +++     I  +P
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIA 111
           +   +      L  +P  I   +N   L L  N ++MI       L HL    +  N I 
Sbjct: 55  QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           +I       L SL  L + +N +  +P     Y+  L  +   +N I  +P   F++   
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 8e-17
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
           +L +L LQ+NNL      + +   L E+ L+ N+LE I       +  L +  +SNN + 
Sbjct: 233 ELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
            ++     + +L VL++S+N +  +  N      L ++   HN+I  +       
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.7 bits (186), Expect = 1e-16
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            L  ++L YN L+ +       +  L  L ++NN+L  +N     +P L   ++S+N + 
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
            +  N      L  L + +N I +L  +     +L ++  SHN    
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDC 359

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.8 bits (181), Expect = 6e-16
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
             K++  + + ++ LP  +      +  L LN+ Q+E I+   +     + K  +  N I
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
             +  ++  N+  L VL +  N + SLP  I      LT +  S+N +  +    F 
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 6e-15
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
            L VL L+ N+L  LP  I  +   L  L+++NN LE I +        L    +S+N +
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
             +      + SL   N+S N + +L   I    ++  +DASHN+I+ V   +  +
Sbjct: 184 THVDL--SLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVNVE 233

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 21/135 (15%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
           KL  L++  NNL+ + D+  +  T+L  L L++N+L  ++ ++  +P L+  NVS N+++
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLS 205

Query: 112 KISDNI-----------------GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
            ++  I                      L +L + +N +      +     L  +D S+N
Sbjct: 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYN 264

Query: 155 TISYVPWKLFSKFHQ 169
            +  + +  F K  +
Sbjct: 265 ELEKIMYHPFVKMQR 279

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 57  LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISD 115
           +++Q  ++    ++I  L N   +   N+ +  +    +     +   N+++  I +I  
Sbjct: 34  IDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 92

Query: 116 NI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
                  ++  L +  N I  LP ++   +  LT +    N +S +P  +F  
Sbjct: 93  YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 9/121 (7%)

Query: 58  NLQYNNLKGLPDEIRHLTNL-NELALNNNQLEMINEAVY------DLPHLYKFNVSNNMI 110
             +YN     P+     +NL  +    +  ++M  + VY       L +       N+ +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFH 168
            K+   +  +   + +LN+++ +IE +      Y  ++  +    N I Y+P  +F    
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 169 Q 169
            
Sbjct: 124 L 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 9e-17
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L  L +  N +  L   + +L+ L  L +  NQ+  I  AV DL  L   NV +N I+ 
Sbjct: 222 RLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD 279

Query: 113 ISDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVP 160
           IS  + NL+ L  L ++NN++ +   E IG + +LT +  S N I+ + 
Sbjct: 280 IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 9e-17
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           K+  LNL  N+       + ++T LN L +  ++++ +   + +L  LY  +++ N I  
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIED 191

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           IS  + +LTSL       N+I  +   +  M  L  +   +N I+ + 
Sbjct: 192 IS-PLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLS 237

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 1e-16
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ LNL  N +  +   + +L  L  L +  N++  I  A+ +L +L +  ++ + I+ 
Sbjct: 67  NLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISD 124

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           IS  + NLT +  LN+  N   S    +  M  L ++  + + +  V 
Sbjct: 125 IS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 1e-16
 Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L       N +  +   + ++T LN L + NN++  +   + +L  L    +  N I+ 
Sbjct: 200 SLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISD 257

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
           I+  + +LT L +LN+ +N+I  +   +  +  L  +  ++N +     ++   
Sbjct: 258 IN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.3 bits (181), Expect = 5e-16
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  L+L YN ++ +   +  LT+L+      NQ+  I   V ++  L    + NN I  
Sbjct: 178 DLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITD 235

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           +S  + NL+ L  L I  N+I  +   +  +  L  ++   N IS + 
Sbjct: 236 LS-PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS 281

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 1e-15
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KL  L +  N +  +   +++LTNL EL LN + +  I   + +L  +Y  N+  N    
Sbjct: 89  KLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLS 146

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
               + N+T L  L ++ +K++ +   I  +  L  +  ++N I 
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIE 190

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            +  L +    +  +   I +LTNL  L LN NQ+  I   + +L  L    +  N I  
Sbjct: 45  SITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITD 102

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           IS  + NLT+L  L ++ + I  +   +  +  +  ++   N      
Sbjct: 103 IS-ALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL 148

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L  L +  N +  +   ++ LT L  L + +NQ+  I   + +L  L    ++NN +  
Sbjct: 244 QLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGN 301

Query: 113 IS-DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
              + IG LT+L  L +S N I  +   +  +  +   D ++  I 
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +     LQ  ++  +      L ++ +L +   ++  I + +  L +L   N++ N I  
Sbjct: 23  EGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITD 80

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           IS  + NL  L  L I  NKI  +   +  + +L  +  + + IS + 
Sbjct: 81  IS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDIS 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 8e-12
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
              L      +  +      L       L    +  +     +L  + K  V+   +A I
Sbjct: 2   AATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAGEKVASI 59

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
              I  LT+L  LN++ N+I  +   +  +  LT++    N I+ + 
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS 104

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
           +L+VL+L    ++ + D   + L++L+ L L  N ++ +    +  L  L K       +
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENIGY---MKSLTHIDASHNTISYVPWKLFSK 166
           A + +   G+L +L  LN+++N I+S      Y   + +L H+D S N I  +       
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 167 FHQ 169
            HQ
Sbjct: 172 LHQ 174

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.6 bits (171), Expect = 7e-15
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
            K L+L +N L+ L          L  L L+  +++ I +  Y  L HL    ++ N I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
            ++      L+SL  L      + SL     G++K+L  ++ +HN I    
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY--DLPHLYKFNVSNNM 109
            L+ L     NL  L +    HL  L EL + +N ++      Y  +L +L   ++S+N 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 110 IAKIS----DNIGNLTSL-LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
           I  I       +  +  L L L++S N +  +         L  +    N +  VP  +F
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIF 220

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 60  QYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKISDNI- 117
              N   +PD +    +   L L+ N L  +    +   P L   ++S   I  I D   
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 118 GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
            +L+ L  L ++ N I+SL       + SL  + A    ++ +          
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 57  LNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNN 108
           L+L  N +  +         L ELAL+ NQL+ + + ++D L  L K  +  N
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            +   L+     ++ +   +  L     LAL+ N +E I  ++  + +L   ++  N+I 
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIK 83

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
           KI +      +L  L IS N+I SL   I  + +L  +  S+N I+
Sbjct: 84  KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.5 bits (155), Expect = 5e-13
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
             K L L  NN++ +   +  + NL  L+L  N ++ I         L +  +S N IA 
Sbjct: 49  ACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS 107

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHN 154
           +S  I  L +L VL +SNNKI +  E   +  +  L  +  + N
Sbjct: 108 LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 87  LEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSL 146
            E     V       + +     I K+   +  L +   L +S N IE +  ++  M++L
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENL 72

Query: 147 THIDASHNTIS 157
             +    N I 
Sbjct: 73  RILSLGRNLIK 83

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 54  LKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
           + VLNL +N L+ L        + L  L +  N +  +  E    LP L   N+ +N ++
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 112 KISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
           ++SD      T+L  L++ +N I+ +  N     K+L  +D SHN +S        
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQL-EMINEAVYDLPHLYKFNVSNNMI 110
           +L  L++ +N +  L P+  + L  L  L L +N+L ++ ++      +L + ++ +N I
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109

Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
            KI +N      +L+ L++S+N + S        +++L  +  S+N I  +  +    F 
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 169 Q 169
            
Sbjct: 170 N 170

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 12/130 (9%)

Query: 53  KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAVY---------DLPHLYK 102
            L +L+L  NN+  + D+ +  L  L  L L +N L  + +             L HL+ 
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 103 FNVSNNMIAKISDN-IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
            N+ +N   +I      +L  L ++++  N + +LP ++     SL  ++   N I+ V 
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 161 WKLFSKFHQN 170
            K+F    +N
Sbjct: 601 KKVFGPAFRN 610

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 53  KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
            LKVLNLQ+N L  L D+     TNL EL L +N ++ I N       +L   ++S+N +
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN---IGYMKSLTHIDASHNTISYVPWKLFSK 166
           +         L +L  L +SNNKI++L      I    SL  ++ S N I       F  
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 167 FHQ 169
             +
Sbjct: 194 IGR 196

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 7/120 (5%)

Query: 53  KLKVLNLQYNNLKGL--PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
            L+VL+L  N +       E R L N+ E+ L+ N+   +   +   +P L +  +    
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

Query: 110 IAKISDN---IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
           +  +  +      L +L +L++SNN I ++ ++ +  ++ L  +D  HN ++ +      
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 42  ESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI--NEAVYDLP 98
            +    S     L +LNL  N +  +  +    L +L  L L  N++      +    L 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 99  HLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNNKIESLPEN---IGYMKSLTHIDASHN 154
           ++++  +S N   +++ N    + SL  L +    ++++  +      +++LT +D S+N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 155 TISYVPWKLFSKFHQ 169
            I+ +   +     +
Sbjct: 491 NIANINDDMLEGLEK 505

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAK 112
            +V +  +  L  +PD++   TN+  L L +NQL  +          L   +V  N I+K
Sbjct: 6   HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           +       L  L VLN+ +N++  L +    +  +LT +    N+I  +    F K   
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 5e-14
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
            L  L+L  N+++ +  +      NL  L L++N L          L +L +  +SNN I
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 111 AKISDN---IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSK 166
             +      I   +SL  L +S+N+I+         +  L  +  ++  +     +    
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 167 FHQNRS 172
              N S
Sbjct: 218 ELANTS 223

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI---NEAVYDLPH--LYKFNVS 106
            L+ LN++ N++ G+   +   L NL  L+L+N+   +    NE    L H  L+  N++
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 107 NNMIAKISDN-IGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKL 163
            N I+KI  +    L  L VL++  N+I      +    ++++  I  S+N    +    
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 164 FSKFHQ 169
           F+    
Sbjct: 450 FALVPS 455

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAV----YDLPHLYKFNVSN 107
            LK L L  N +K   P     +  L  L LNN QL                +   ++SN
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 108 NMIAKISDNIG---NLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKL 163
           + ++  S+        T+L +L++S N +  +  +   ++  L +    +N I ++    
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 164 FSKFHQ 169
                 
Sbjct: 292 LHGLFN 297

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQL----------EMINEAVYDLPHLY 101
           +L+   L+YNN++ L    +  L N+  L L  +            ++ + +   L  L 
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 102 KFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIG-----YMKSLTHIDASHNT 155
             N+ +N I  I  N+   L +L  L++SN+                   L  ++ + N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 156 ISYVPWKLFSKFHQ 169
           IS +    FS    
Sbjct: 393 ISKIESDAFSWLGH 406

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 15/145 (10%)

Query: 38  TGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEI---RHLTNLNELALNNNQLEMINEAV 94
             S    +        ++ L+L  + L    +        TNL  L L+ N L ++    
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 95  -YDLPHLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNN---------KIESLPEN-IGY 142
              LP L  F +  N I  +  + +  L ++  LN+  +          +  + +    +
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 143 MKSLTHIDASHNTISYVPWKLFSKF 167
           +K L H++   N I  +   +F+  
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGL 352

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI 110
            L +LNL+ N    +  +  + L  L  + L  N L  +  +V  +   L   N+  N+I
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 111 AKISDNI--GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
             +   +      +L  L++  N  +   E+I +   +  I+ +H  I  + 
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF--VNWINETHTNIPELS 646

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIR----HLTNLNELALNNNQLEMINEAVYD---LPHLYKFNV 105
           +L  L L    L     E        T++  L+L+N+QL   +   +      +L   ++
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 106 SNNMIAKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHN 154
           S N +  + ++    L  L    +  N I+ L  + +  + ++ +++   +
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 3e-16
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 8/108 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            LK++++  N+LK LPD    L  +      NNQLE + E + +LP L      NN + K
Sbjct: 154 FLKIIDVDNNSLKKLPDLPPSLEFIA---AGNNQLEELPE-LQNLPFLTAIYADNNSLKK 209

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           + D   +L S+      NN +E LPE +  +  LT I A +N +  +P
Sbjct: 210 LPDLPLSLESI---VAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP 253

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 8/108 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ L +  N L+ LP E+++ + L  + ++NN L+ + +     P L      NN + +
Sbjct: 132 LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE 187

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           + + + NL  L  +   NN ++ LP+      SL  I A +N +  +P
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELP 231

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +   L L    L  LP+   HL +L     + N L  + E    L  L   N +      
Sbjct: 72  QAHELELNNLGLSSLPELPPHLESLV---ASCNSLTELPELPQSLKSLLVDNNNLK---A 125

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           +SD    L  L    +SNN++E LPE +     L  ID  +N++  +P
Sbjct: 126 LSDLPPLLEYL---GVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLP 169

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 22/130 (16%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLN-----------------ELALNNNQLEMINEAVY 95
            L+ L    N+L  LP+  + L +L                   L ++NNQLE + E + 
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-LQ 150

Query: 96  DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNT 155
           +   L   +V NN + K+ D   +L  +      NN++E LPE +  +  LT I A +N+
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPSLEFI---AAGNNQLEELPE-LQNLPFLTAIYADNNS 206

Query: 156 ISYVPWKLFS 165
           +  +P    S
Sbjct: 207 LKKLPDLPLS 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 8e-14
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ LN++ N L  LP+  + LT L+      + L  +       P+LY  N S+N I  
Sbjct: 258 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRS 311

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
           + D   +L  L   N+SNNK+  LP        L  + AS N ++ VP    +
Sbjct: 312 LCDLPPSLEEL---NVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQN 358

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 18/122 (14%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ +    N L+ LP E+++L  L  +  +NN L+ + +     P L   NV +N +  
Sbjct: 216 SLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD 271

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGY--------------MKSLTHIDASHNTISY 158
           + +   +LT L V     + +  LP N+ Y                SL  ++ S+N +  
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE 331

Query: 159 VP 160
           +P
Sbjct: 332 LP 333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL---------EMINEAVYDLP---- 98
             L+      +NL  +P E  ++ +  E     ++          E    AV  L     
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 99  -HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
              ++  ++N  ++ + +   +L SL     S N +  LPE    +KSL   + +   +S
Sbjct: 71  RQAHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALS 127

Query: 158 YVPWKL 163
            +P  L
Sbjct: 128 DLPPLL 133

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 25/124 (20%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  LN   N ++ L D    L  LN   ++NN+L  +       P L +   S N +A+
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELN---VSNNKLIELPA---LPPRLERLIASFNHLAE 351

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMK----------------SLTHIDASHNTI 156
           + +   NL  L   ++  N +   P+    ++                +L  +    N +
Sbjct: 352 VPELPQNLKQL---HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 157 SYVP 160
              P
Sbjct: 409 REFP 412

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 13/108 (12%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L+ L   +N+L  +P+  ++L  L+   +  N L    +    +  L      N+ +A+
Sbjct: 338 RLERLIASFNHLAEVPELPQNLKQLH---VEYNPLREFPDIPESVEDLR----MNSHLAE 390

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           + +   NL     L++  N +   P+      S+  +  +   +    
Sbjct: 391 VPELPQNLK---QLHVETNPLREFPDIPE---SVEDLRMNSERVVDPY 432

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            LK L+++YN L+  PD    + +L      N+ L  + E      +L + +V  N + +
Sbjct: 358 NLKQLHVEYNPLREFPDIPESVEDLRM----NSHLAEVPEL---PQNLKQLHVETNPLRE 410

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
             D   ++     L +++ ++    E           D   +
Sbjct: 411 FPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.5 bits (183), Expect = 4e-16
 Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
           + K+  +  ++LK     + +   N+ EL L+ N L  I+   +     L   N+S+N++
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFS 165
            +  D + +L++L  L+++NN ++ L        S+  + A++N IS V      
Sbjct: 71  YETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRGQ 120

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 1e-14
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            +K L+L  N L  +   ++   T L  L L++N L      +  L  L   +++NN + 
Sbjct: 35  NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQ 93

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
                +    S+  L+ +NN I  +  +    +   +I  ++N I+ +         +
Sbjct: 94  ----ELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.6 bits (165), Expect = 8e-14
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ LNLQYN +  +  ++     L  L L++N+L  +         +   ++ NN +  
Sbjct: 170 TLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171
           I   +    +L   ++  N          + K+      +  T+  +  +   +     
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
            ++ L+   NN+  +            + L NN++ M+ +        +   ++  N I 
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 112 KISDN--IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            ++      +  +L  LN+  N I  +   +     L  +D S N ++++ 
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMG 207

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 1/123 (0%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KLK L+L  N L  +  E +    +  ++L NN+L +I +A+    +L  F++  N    
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTISYVPWKLFSKFHQNR 171
            +       +  V  ++   ++ L           T           +P     +    +
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 172 SSR 174
              
Sbjct: 312 RKE 314

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 21/115 (18%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ L+L  N ++ L        ++  L   NN +  ++ +           ++NN I  
Sbjct: 81  TLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITM 134

Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLF 164
           + D   G  + +  L++  N+I+++          +L H++  +N I  V  ++ 
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 14/97 (14%), Positives = 44/97 (45%), Gaps = 3/97 (3%)

Query: 66  GLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDN-IGNLTSL 123
            + +  ++        + ++ L+           ++ + ++S N +++IS   +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 124 LVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            +LN+S+N +    + +  + +L  +D ++N +  + 
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL 96

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 7/121 (5%), Positives = 27/121 (22%), Gaps = 8/121 (6%)

Query: 54  LKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEAVYD------LPHLYKFNVS 106
            +V  +    +K L        T            E +     D             +  
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY-MKSLTHIDASHNTISYVPWKLFS 165
            +   ++     N      ++    +  ++ + +    ++   ++     +         
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 166 K 166
            
Sbjct: 382 A 382

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 7/58 (12%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           I +   N     +  ++++ ++    ++     ++  +D S N +S +     + F +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 4/116 (3%)

Query: 54  LKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIA 111
            + L   +N L  +       L NL  L L   Q+  I  +       L    ++ N + 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
            +++       +L  L      I S+    +   K+L  +    N IS +      
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 53  KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
            L  L+L    +  + ++  +    L+ L L  N L  +   A+     L         I
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFH 168
           + I    + N  +L  L + +N I S+        + L  +D  +N I Y+  +  S   
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 169 Q 169
           Q
Sbjct: 178 Q 178

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 6/123 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMI- 110
            L+ L+L   +L  LP  +  L+ L +L L+ N+ E + +    + P L   ++  N   
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPENIG---YMKSLTHIDASHNTISYVPWKLFSK 166
            ++    + NL +L  L++S++ IE+          +  L  ++ S+N    +  + F +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 167 FHQ 169
             Q
Sbjct: 399 CPQ 401

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINE----AVYDLPHLYKFNVSN 107
            LKVLNL ++ L    +++   L  L  L L  N     N     ++  L  L    +S 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 108 NMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
             ++ I  +   +L  +  +++S+N++ S            +++ + N IS +   L   
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPI 545

Query: 167 FHQNRS 172
             Q R+
Sbjct: 546 LSQQRT 551

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 53  KLKVLNLQYNNLKGLP---DEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNN 108
            L+ L+L +++++       ++R+L++L  L L+ N+   +  EA  + P L   +++  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 109 MIAKISDN--IGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
            +          NL  L VLN+S++ ++   E +   + +L H++   N       +  +
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 166 KFHQNRS 172
                  
Sbjct: 471 SLQTLGR 477

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 8e-14
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
           +L  L L  N L  + +        L  L      +  I    +++   L    + +N I
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 111 AKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHI--DASHNTISYVPWKLFSK 166
           + I          L VL+  NN I  L +  +  ++  T++  + + N I+ +    F  
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 167 FH 168
             
Sbjct: 202 AV 203

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 51  VLKLKVLNLQYNNLKGLPDEI---RHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVS 106
           +  L +   +  + + +   +       ++  + L  +    I+    +    L + +++
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTIS 157
              ++++   +  L++L  L +S NK E+L +       SLTH+    NT  
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 52  LKLKVLNLQYNNLKGLPDE---IRHLTNLNELALNNNQLEMINEAVYD---LPHLYKFNV 105
              + LN        +  +      + +L      +   E I+ AV++      +   N+
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 106 SNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
             +    IS N     + L  L+++   +  LP  +  + +L  +  S N    +     
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA 321

Query: 165 SKFHQ 169
           S F  
Sbjct: 322 SNFPS 326

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 7/120 (5%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI---NEAVYDLPHLYKFNVSNN 108
                LNL  N++ G+            L     Q  ++         +  L+     + 
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 109 MIAKISDNI---GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
               IS  +       S+  +N+  +   ++  N       L  +D +   +S +P  L 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
           +L++L L + +L  +       L  +N + L++N+L   +            N+++N I+
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHIS 536

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI 140
            I  ++   L+    +N+  N ++    NI
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 25/112 (22%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
           K  N +   L  +P  +    +   L  + N L  I                       +
Sbjct: 15  KTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTI----------------------QN 50

Query: 115 DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
                L +L  L+++  +I  + E+       L  +  + N + ++     S
Sbjct: 51  TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 4e-16
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 8/122 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI----NEAVYDLPHLYKFNVSN 107
           K+K + ++ + +  +P    +HL +L  L L+ N +       +      P L    +S 
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 108 NMIAKISDNIG---NLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
           N +  +         L +L  L+IS N    +P++  + + +  ++ S   I  V   + 
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP 430

Query: 165 SK 166
             
Sbjct: 431 QT 432

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.8 bits (179), Expect = 1e-15
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  L++  N    +PD  +    +  L L++  + ++   +     L   +VSNN +  
Sbjct: 388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDS 445

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
            S     L  L  L IS NK+++LP+       L  +  S N +  VP  +F +   
Sbjct: 446 FSLF---LPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 4e-15
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 53  KLKVLNLQYNNLKGLPDE---IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
            L+ L L  N+L+ +      +  L NL  L ++ N    + ++      +   N+S+  
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421

Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
           I  +   I    +L VL++SNN ++S       +  L  +  S N +  +P      
Sbjct: 422 IRVVKTCI--PQTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLPDASLFP 473

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           K++ LNL    ++ +   I     L  L ++NN L+  +     LP L +  +S N +  
Sbjct: 411 KMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKT 465

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHN 154
           + D       LLV+ IS N+++S+P+ I   + SL  I    N
Sbjct: 466 LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L+VL L+ + +  +  +    L +L  L L++N L  ++ + +  L  L   N+  N  
Sbjct: 51  NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 111 AKISDN--IGNLTSLLVLNIS-NNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSK 166
             +       NLT+L  L I        +       + SL  ++    ++     +    
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 167 FHQ 169
              
Sbjct: 171 IRD 173

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 6/131 (4%)

Query: 53  KLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVS-NN 108
            L+ L+L  N+L  L       L++L  L L  N  + +       +L +L    +    
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 109 MIAKISDN-IGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSK 166
             ++I       LTSL  L I    + +     +  ++ + H+    +  +++       
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 167 FHQNRSSRFGC 177
               R      
Sbjct: 195 LSSVRYLELRD 205

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 9/118 (7%)

Query: 52  LKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNM 109
           + ++ L++    L      +   L  +  + + N+++ ++       L  L   ++S N+
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

Query: 110 IAKI----SDNIGNLTSLLVLNISNNKIESLPENIGY---MKSLTHIDASHNTISYVP 160
           + +     S   G   SL  L +S N + S+ +       +K+LT +D S NT   +P
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+VL++  NNL         L  L EL ++ N+L+ + +A    P L    +S N +  
Sbjct: 432 TLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQLKS 487

Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENIGYMK 144
           + D I   LTSL  + +  N  +     I Y+ 
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 15/122 (12%)

Query: 54  LKVLNLQYNNLKGLPDEIR---------HLTNLNELALNNNQLEMINEAVYD-LPHLYKF 103
           ++  +   N L                     +  L +    L      VY  L  + + 
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 104 NVSNNMIAKISDNIG-NLTSLLVLNISNNKIESL----PENIGYMKSLTHIDASHNTISY 158
            V N+ +  +  +   +L SL  L++S N +           G   SL  +  S N +  
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 159 VP 160
           + 
Sbjct: 376 MQ 377

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD---------LPHLYKFN 104
             + +  +N L  L   I  L+ +       N L   N +  D            + + +
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 105 VSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTISYVPWK 162
           +    +      +   L  +  + + N+K+  +P +   ++KSL  +D S N +     K
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 163 LFSKFHQNRS 172
             +      S
Sbjct: 353 NSACKGAWPS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 25/114 (21%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
             V + +  +   +P  +     +  L L+ N++  I                       
Sbjct: 7   SGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGD------------------- 45

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
              +    +L VL + +++I ++  +    + SL H+D S N +S +    F  
Sbjct: 46  ---LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 22/139 (15%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKF-------- 103
            +  L L  +    L +     L+++  L L +  L     +   +  +           
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 104 ----NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIG---------YMKSLTHID 150
               + S N + K+   I  L+ +   + + N +     +              ++  + 
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 151 ASHNTISYVPWKLFSKFHQ 169
                + Y    ++S   +
Sbjct: 293 IPQFYLFYDLSTVYSLLEK 311

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L  L L  N LK LP  +   LT L  L+L  N+L+ + + V+D L  L +  + NN +
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
            ++ +     LT L  L + NN+++ +PE     ++ L  +    N     PW
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN-----PW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L+ L +  N L+ LP  +   L NL EL L+ NQL+ +   V+D L  L   ++  N +
Sbjct: 86  NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
             +   +   LTSL  L + NN+++ +PE     +  L  +   +N +  VP   F
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.6 bits (171), Expect = 7e-15
 Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
           KL++L L  N L+ LP  I + L NL  L + +N+L+ +   V+D L +L +  +  N +
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
             +   +  +LT L  L++  N+++SLP+ +   + SL  +   +N +  VP   F K
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
            K L+LQ N L  LP +    LT L  L LN+N+L+ +   ++  L +L    V++N + 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
            +   +   L +L  L +  N+++SLP  +   +  LT++   +N +  +P  +F K
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 22/117 (18%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
               ++     L  +P  I    +  +L L +N+L  +    +  L  L    +++N + 
Sbjct: 17  NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
            +   I   L +L  L +++NK+++LP  +   + +L  +    N +  +P ++F  
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.6 bits (176), Expect = 6e-16
 Identities = 22/113 (19%), Positives = 59/113 (52%), Gaps = 9/113 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
           KL+ ++L  N +  L  +  + L +LN L L  N++  + +++++ L  L    ++ N I
Sbjct: 57  KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
             +  +   +L +L +L++ +NK++++ +     ++++  +  + N     P+
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN-----PF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.2 bits (175), Expect = 9e-16
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 55  KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
             + L+ N +K +P         L  + L+NNQ+  +    +  L  L    +  N I +
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
           +  ++   L SL +L ++ NKI  L  +    + +L  +    N +  +    FS 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L+ L L  N +  + D     LT+L +L L+ N L  I+  +++ L  L   ++S N I
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
             + D     L +L  L +  N+++S+P+ I   + SL  I    N     PW
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-----PW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLE--MINEAVYD-LPHLYKFNVSNN 108
            L +L L YN    L       L NL  L L    L+  +++   +  L  L    + +N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 109 MIAKISDNI--GNLTSLLVLNISNNKIESLPENIGYM---KSLTHIDASHNTISYVPWKL 163
            I KI       N+    VL+++ NK++S+ E        K  T +  S  T+  +    
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 164 FS 165
             
Sbjct: 200 LG 201

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 9e-12
 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 53  KLKVLNLQYNNLKGL--PDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNM 109
            L+ L ++      +   +  R L++L  L L+ NQ   +    ++ L +L    ++   
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114

Query: 110 I--AKISDNI-GNLTSLLVLNISNNKIESLPENI--GYMKSLTHIDASHNTISYVPWKLF 164
           +  A +S N    LTSL +L + +N I+ +        M+    +D + N +  +  +  
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

Query: 165 SKF 167
             F
Sbjct: 175 LNF 177

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 54  LKVLNLQYNNLKGLPDEIRH---LTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNM 109
               +  + N K   +        + +    L+ +++  + ++V+     L +  ++ N 
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
           I KI DN    LT LL LN+S N + S+   +   +  L  +D S+N I  +  + F   
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

Query: 168 HQ 169
             
Sbjct: 371 PN 372

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 54  LKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSNNMI 110
           +  ++L  N++  L +     L +L  L +      ++  N     L  L    +  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 111 AKISDNI-GNLTSLLVLNISNNKIES--LPENI-GYMKSLTHIDASHNTISYVP 160
            ++       L +L VL ++   ++   L  N    + SL  +    N I  + 
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 19/133 (14%)

Query: 53  KLKVLNLQYNNLKGLPDEIRH----LTNLNELALNN----------NQLEMINEAVYD-- 96
            +  L+L  N  K    +        T +  L L+N             +  +   +   
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 97  -LPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASH 153
               +   ++S + I  +  ++  + T L  L ++ N+I  + +N    +  L  ++ S 
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 154 NTISYVPWKLFSK 166
           N +  +  ++F  
Sbjct: 333 NFLGSIDSRMFEN 345

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 9e-16
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
           KL+ L L  N L+G +P E+ ++  L  L L+ N L   I   + +  +L   ++SNN +
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 111 A-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
             +I   IG L +L +L +SNN    ++P  +G  +SL  +D + N  +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 54  LKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI- 110
           L+ L LQ N   G +P  + + + L  L L+ N L   I  ++  L  L    +  NM+ 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 111 AKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
            +I   +  + +L  L +  N +   +P  +    +L  I  S+N ++
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 65.3 bits (160), Expect = 6e-13
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 13/115 (11%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLT-NLNELALNNNQL------EMINEAVYDLPHLYKFN 104
            LKVL+L +N   G LP+ + +L+ +L  L L++N         +          L +  
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ---NPKNTLQELY 400

Query: 105 VSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
           + NN    KI   + N + L+ L++S N +  ++P ++G +  L  +    N + 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQL--EMINEAVYDLPHLYKFNVSNNM 109
           +LK+LN+  N   G +P     L +L  L+L  N+   E+ +        L   ++S N 
Sbjct: 248 ELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305

Query: 110 IA-KISDNIGNLTSLLVLNISNNKIE-SLP-ENIGYMKSLTHIDASHNTIS 157
               +    G+ + L  L +S+N     LP + +  M+ L  +D S N  S
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 48  SEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNV 105
           ++ + K           +G   +++  L+  N   + +       +    +   +   ++
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639

Query: 106 SNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
           S NM++  I   IG++  L +LN+ +N I  S+P+ +G ++ L  +D S N + 
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
            L+ L L +N+L G +P  + + TNLN ++L+NN+L   I + +  L +L    +SNN  
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

Query: 111 A-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTI 156
           +  I   +G+  SL+ L+++ N    ++P  +         +      
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
                N+      G       +  ++  L ++ N L   I + +  +P+L+  N+ +N I
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 111 A-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
           +  I D +G+L  L +L++S+NK++  +P+ +  +  LT ID S+N +S
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 5e-11
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 38  TGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYD 96
           +G+       S+   +LK L +  N + G +   +    NL  L +++N        + D
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGD 221

Query: 97  LPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHN 154
              L   ++S N ++   S  I   T L +LNIS+N+    +P     +KSL ++  + N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

Query: 155 TIS 157
             +
Sbjct: 280 KFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 5e-11
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMIA 111
            L+ L++  NN       +   + L  L ++ N+L    + A+     L   N+S+N   
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN--- 257

Query: 112 KISDNI--GNLTSLLVLNISNNKIE-SLPENI-GYMKSLTHIDASHNTIS 157
           +    I    L SL  L+++ NK    +P+ + G   +LT +D S N   
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 26/131 (19%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE---------------------MI 90
            L +L L  N+  G +P E+    +L  L LN N                          
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574

Query: 91  NEAVYDLPHLYKFNVSNNMIA---KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSL 146
              + +     + + + N++      S+ +  L++    NI++               S+
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 147 THIDASHNTIS 157
             +D S+N +S
Sbjct: 635 MFLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 53  KLKVLNLQYNNLKGL--PDEIRHLTNLNELALNNNQLE----MINEAVYDLPHLYKFNVS 106
            LK LN+  N L           L +L  L L+ N +     +          L    +S
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 107 NNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
            N I+  +   +    +L  L++S+N     +P  +G   +L H+D S N +S
Sbjct: 187 GNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVYDLPHLYKFNVSNNMI 110
            L  ++L  N L G +P  I  L NL  L L+NN     I   + D   L   +++ N+ 
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

Query: 111 A-KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
              I   +   +  +  N    K       I           + N + +
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKR---YVYIKNDGMKKECHGAGNLLEF 596

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 54  LKVLNLQYNNLKG----LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
           +  ++L    L      +   +  LT L  L L+N+ +            L   ++S N 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 110 IAK---ISDNIGNLTSLLVLNISNNKIE-SLPENIGY-MKSLTHIDASHNTIS 157
           ++       ++G+ + L  LN+S+N ++     + G  + SL  +D S N+IS
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 72  RHLTNLNELALN-NNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISN 130
             +T+++  +   N     ++ ++  L  L    +SN+ I           SL  L++S 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 131 NKIE---SLPENIGYMKSLTHIDASHNTIS 157
           N +    +   ++G    L  ++ S NT+ 
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KL  L L  N +  +   +  LT L  L LN NQLE I   + +L +L    +  N I+ 
Sbjct: 266 KLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISD 323

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           IS  + +LT L  L   NNK+  +   +  + ++  + A HN IS + 
Sbjct: 324 IS-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLT 369

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  L L  N L+ +   I +L NL  L L  N +  I   V  L  L +    NN ++ 
Sbjct: 288 ALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSD 345

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
           +S ++ NLT++  L+  +N+I  L   +  +  +T +  +    +  P    + 
Sbjct: 346 VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKAN 397

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.1 bits (175), Expect = 5e-15
 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ L    N +  +   +  LTNL+EL+LN NQL+ I   +  L +L   +++NN I+ 
Sbjct: 200 NLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN 257

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           ++  +  LT L  L +  N+I ++   +  + +LT+++ + N +  + 
Sbjct: 258 LA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDIS 303

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.4 bits (173), Expect = 8e-15
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ L++  N +  +   +  LTNL  L   NNQ+  I   +  L +L + +++ N +  
Sbjct: 178 TLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKD 235

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           I   + +LT+L  L+++NN+I +L   +  +  LT +    N IS + 
Sbjct: 236 IG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS 281

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  L L  N +  +   +  LT+L +L+  N   ++    + +L  L + ++S+N ++ 
Sbjct: 135 NLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSD 191

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           IS  +  LT+L  L  +NN+I  +   +G + +L  +  + N +  + 
Sbjct: 192 IS-VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIG 237

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  +N   N L  +   +++LT L ++ +NNNQ+  I   + +L +L    + NN I  
Sbjct: 69  NLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITD 126

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           I   + NLT+L  L +S+N I  +   +  + SL  +   +      P
Sbjct: 127 ID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KL+ L    N +  +   + +LTN+N L+  +NQ+  +   + +L  + +  +++     
Sbjct: 332 KLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
              N     S+     +       P  I    S T  D + N  SY  
Sbjct: 390 APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 50  PVLKLKVL-NLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
           P+    +  +   N +         L    +  L    +     +  DL  +        
Sbjct: 2   PLGSATITQDTPINQIFTDT----ALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRL 56

Query: 109 MIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
            I  I   +  L +L  +N SNN++  +   +  +  L  I  ++N I+ + 
Sbjct: 57  GIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT 106

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 1/105 (0%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            +  L+  +N +  L   + +LT + +L LN+               +     +      
Sbjct: 354 NINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
               I +  S    +I+ N      E          I     T S
Sbjct: 413 APATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFS 457

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQL-EMINEAVYDLPHLYKFNVSNNMI 110
           +L+VL+L    ++ +     + L++L+ L L  N +  +   A   L  L K       +
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 111 AKISDN-IGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
           A + +  IG+L +L  LN+++N I+S   PE    + +L H+D S N I  +        
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 168 HQ 169
           HQ
Sbjct: 173 HQ 174

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLE--MINEAVYDLPHLYKFNVSNNM 109
            L  L++ + + +         L++L  L +  N  +   + +   +L +L   ++S   
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 110 IAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKF 167
           + ++S     +L+SL VLN+S+N   SL       + SL  +D S N I     +    F
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 168 HQN 170
             +
Sbjct: 542 PSS 544

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 6e-13
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 53  KLKVLNLQYNNLKGL---PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
            L+ L+L  N L             T+L  L L+ N +  ++     L  L   +  ++ 
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 110 IAKISDN--IGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISY-VPWKLFS 165
           + ++S+     +L +L+ L+IS+             + SL  +  + N+        +F+
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 166 KFHQ 169
           +   
Sbjct: 468 ELRN 471

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
             + L L        P     L +L  L   +N+       V DLP L   ++S N ++ 
Sbjct: 305 GWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSF 361

Query: 113 ---ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
               S +    TSL  L++S N + ++  N   ++ L H+D  H+ + 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMI 110
            L  L+L    L+ L P     L++L  L +++N    ++   Y  L  L   + S N I
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 111 AKISDNI--GNLTSLLVLNISNNKI 133
                       +SL  LN++ N  
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 14/129 (10%)

Query: 52  LKLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMINEAVYD----LPHLYKFNV 105
           ++L  L L+ N      +   I+ L  L    L   +              L  L    +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 106 SNNMIAK-------ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
               +A        I D    LT++   ++ +  IE +  +  Y     H++  +     
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQ 318

Query: 159 VPWKLFSKF 167
            P       
Sbjct: 319 FPTLKLKSL 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 13/122 (10%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL--EMINEAVYDLPHL-------YK 102
           L    L+L  N +  +         L++L L NN     ++   +  L  L        +
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI----GYMKSLTHIDASHNTISY 158
           F    N+       +  L +L +       ++   ++I      + +++       TI  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 159 VP 160
           V 
Sbjct: 297 VK 298

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 25/116 (21%)

Query: 51  VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
           V+          N   +PD +    +   L L+ N L  +                    
Sbjct: 6   VVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHL-------------------- 43

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS 165
              S +  +   L VL++S  +I+++ +     +  L+ +  + N I  +    FS
Sbjct: 44  --GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 3e-15
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 43  SNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102
           +++     +  L  L L  N +K L   ++ L  L  L+L +N +  I   +  LP L  
Sbjct: 78  TDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLES 135

Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
             + NN I  I+  +  LT L  L++ +N+I  +   +  +  L ++  S N IS
Sbjct: 136 LYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 1e-14
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            +  L L  N L  +   + +L NL  L L+ N+++ +  ++ DL  L   ++ +N I+ 
Sbjct: 66  NVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISD 123

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           I+  + +L  L  L + NNKI  +   +  +  L  +    N IS + 
Sbjct: 124 IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 169

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 1e-14
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KLK L+L++N +  +   + HL  L  L L NN++  I   +  L  L   ++ +N I+ 
Sbjct: 110 KLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD 167

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
           I   +  LT L  L +S N I  L   +  +K+L  ++         P    S      +
Sbjct: 168 IV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 173 SR 174
            +
Sbjct: 226 VK 227

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 3e-13
 Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +    NL+  ++         L +++++  NN+ ++ + + +  LP++ K  ++ N +  
Sbjct: 22  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTD 79

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
           I   + NL +L  L +  NKI+ L  ++  +K L  +   HN IS
Sbjct: 80  IK-PLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 8e-11
 Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           +         +K +           +  L    +        +L  + +   +N+ I  +
Sbjct: 1   MGETITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV 58

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
              I  L ++  L ++ NK+  + + +  +K+L  +    N I 
Sbjct: 59  Q-GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIK 100

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.3 bits (170), Expect = 4e-15
 Identities = 22/113 (19%), Positives = 55/113 (48%), Gaps = 9/113 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
           +L+ +N   N +  + +      + +NE+ L +N+LE +   ++  L  L    + +N I
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
             + ++    L+S+ +L++ +N+I ++       + SL+ ++   N     P+
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN-----PF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 55  KVLNLQYNNLKGLP--DEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
             L L  N    L      + L  L ++  +NN++  I E  ++    + +  +++N + 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFS 165
            +   +   L SL  L + +N+I  +  +    + S+  +    N I+ V    F 
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.2 bits (172), Expect = 1e-14
 Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 42  ESNMSQSEPVLKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINE-AVYDLPH 99
           + N         ++ L+L +  +  L   +   L +L  L L  N++  I + A Y L +
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 100 LYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTIS 157
           L   N+S N++ ++  +    L  +  +++  N I  + +    +++ L  +D   N ++
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 158 YVP 160
            + 
Sbjct: 376 TIH 378

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 9/127 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLE---MINEAVYDLPHLYKFNVSNN 108
            L++L+L  + +  L  +  + L +L EL L    L    + +    +L  L + ++S N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 109 MIAKI--SDNIGNLTSLLVLNISNNKIESLPENI---GYMKSLTHIDASHNTISYVPWKL 163
            I  +    + G L SL  ++ S+N+I  + E+       K+L+    + N++       
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 164 FSKFHQN 170
           + K    
Sbjct: 194 WGKCMNP 200

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 53  KLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMINE------AVYDLPHLYKFN 104
            L++L L  N       +       +L +L L  N L++  E          L HL    
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 105 VSNNMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL 163
           +++N +  +   +  +LT+L  L++++N++  L  N     +L  +D S N +      +
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDV 545

Query: 164 FS--KFHQNRSSRFGCALIMNDF 184
           F          ++F C   ++ F
Sbjct: 546 FVSLSVLDITHNKFICECELSTF 568

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 52  LKLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSN 107
           L   +++L  N L+ L     +  + +L  L LN N+      ++   + P L +  +  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 108 NMIAKI------SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
           NM+          D    L+ L VL +++N + SLP  +  ++ +L  +  + N ++ + 
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 161 WKLFSK 166
                 
Sbjct: 521 HNDLPA 526

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 54  LKVLNLQYNNLKGLPDEI---RHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNM 109
           +      ++N+K            +++  L L++  +  +N  V+  L  L   N++ N 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKF 167
           I KI+D     L +L VLN+S N +  L  +    +  + +ID   N I+ +  + F   
Sbjct: 302 INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 168 HQ 169
            +
Sbjct: 362 EK 363

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 8e-12
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSNNM 109
             + L L +N ++ +       L  L  L L +    +    EA  +LP+L   ++ ++ 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESL---PENIGYMKSLTHIDASHNTISYVP 160
           I  +  +    L  L  L +    +            +K+LT +D S N I  + 
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 6e-11
 Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 18/154 (11%)

Query: 34  ISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRH-------------LTNLNEL 80
           + S               + L++L++  N                          ++   
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 81  ALNNNQLEMINEAVYD---LPHLYKFNVSNNMIAKISDNI-GNLTSLLVLNISNNKIESL 136
               + ++  ++  +       +   ++S+  +  ++  +   L  L VLN++ NKI  +
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 137 PENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
            +     + +L  ++ S+N +  +    F    +
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLYKFNVSNNMIA-K 112
           ++   ++ NL  +P   + L     L L+ N +  +  +    L  L    + +      
Sbjct: 7   RIAFYRFCNLTQVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTIS 157
           I      NL +L +L++ ++KI  L  +    +  L  +      +S
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 7e-10
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY-DLPHLYKFNVSNNMI 110
            L+VLNL YN L  L       L  +  + L  N + +I +  +  L  L   ++ +N +
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
             I      + S+  + +S NK+ +LP+      +   I  S N +  +    F
Sbjct: 375 TTIH----FIPSIPDIFLSGNKLVTLPKIN---LTANLIHLSENRLENLDILYF 421

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 24/138 (17%)

Query: 52  LKLKVLNLQYNNLKGLPD-------EIRHLTNLNELALNNNQLEMI-------------N 91
             L   +L  N+L                   L  L ++ N   +               
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 92  EAVYDLPHLYKFNVSNNMIAKISDNI---GNLTSLLVLNISNNKIESLPENI-GYMKSLT 147
            ++    H+       + I     N       +S+  L++S+  + SL   +   +K L 
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293

Query: 148 HIDASHNTISYVPWKLFS 165
            ++ ++N I+ +  + F 
Sbjct: 294 VLNLAYNKINKIADEAFY 311

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 26/143 (18%)

Query: 53  KLKVLNLQYNNLKGLPDEI---RHLTNLNELALNNNQLEMINEAV-------YDLPHLYK 102
            LK ++   N +  + +          L+  +L  N L              +    L  
Sbjct: 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208

Query: 103 FNVSNNMIAKISDN-------------IGNLTSLLVLNISNNKIESLPENIGY---MKSL 146
            +VS N                     +     ++      + I+   +N        S+
Sbjct: 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268

Query: 147 THIDASHNTISYVPWKLFSKFHQ 169
            H+D SH  +  +  ++F     
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKD 291

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 54  LKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
            K L+L  N++  L   +I  L+ L  L L++N++  ++  V+     L   +VS+N + 
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
            IS     + SL  L++S N  + LP     G +  LT +  S      +     +  H 
Sbjct: 114 NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171

Query: 170 N 170
           +
Sbjct: 172 S 172

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 6e-12
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 28/130 (21%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDL--------------- 97
           +L+ L LQ N LK          N++ L   +  L  +N   YD                
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 98  ------------PHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMK 144
                       P +   ++ NN I  I  ++ +L +L  LN+++N+++S+P+ +   + 
Sbjct: 438 NMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497

Query: 145 SLTHIDASHN 154
           SL +I    N
Sbjct: 498 SLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 12/113 (10%), Positives = 34/113 (30%), Gaps = 7/113 (6%)

Query: 52  LKLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNM 109
            ++ +  L  ++   +        ++   L    N            L  L    +  N 
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 110 IAKISDNIGNLTSLLVLNISNNKIESLPENI-----GYMKSLTHIDASHNTIS 157
           +           ++  L   +  + SL  +       + +S+  ++ S N ++
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKI 113
            +++    NL  +P ++        L+L+ N +  +       L  L    +S+N I  +
Sbjct: 34  SMVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91

Query: 114 SDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
             ++      L  L++S+N+++++      M SL H+D S N    +P
Sbjct: 92  DFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDFDVLP 137

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 51  VLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNN 108
             K+KVL+L  N +  +P ++ HL  L EL + +NQL+ + + V+D L  L    + +N
Sbjct: 449 PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 11/117 (9%), Positives = 39/117 (33%), Gaps = 3/117 (2%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
           L + +++        + +      +N   L+ +    I+             N + N+  
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 112 KI-SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKF 167
                    L  L  L +  N +++  +     K+++ ++    +++ +    + + 
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 53  KLKVLNLQYNNLKGLPD--EIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF--NVSNN 108
            L+ L+L +N+   LP   E  +LT L  L L+  +   ++       HL     ++ + 
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181

Query: 109 MIAKISDNIGNLTSLLVLNISNNKIESLPENIG------YMKSLTHIDASHNTISYVPWK 162
            I         + +  VL++  +        +           L++I  +      +   
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241

Query: 163 LFSKFHQNRSSRF 175
           L            
Sbjct: 242 LSELTRGPTLLNV 254

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 16/128 (12%), Positives = 51/128 (39%), Gaps = 11/128 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L+ L +  ++L+    +  + + N++ L L+  Q  ++ E   D    +    + +  +
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 111 AKI---------SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
                       ++++    +   + I++  +  + + +  +  L  ++ S N +  VP 
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294

Query: 162 KLFSKFHQ 169
            +F +   
Sbjct: 295 GIFDRLTS 302

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 54  LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
           +K L+L  N +  + +   +   NL  L L +N +  I E  +  L  L   ++S N ++
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 112 KISDNI-GNLTSLLVLNISNNKIESLPENI--GYMKSLTHIDASHNT-ISYVPWKLFSKF 167
            +S +    L+SL  LN+  N  ++L E     ++  L  +   +    + +  K F+  
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 168 HQ 169
             
Sbjct: 174 TF 175

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 16/120 (13%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMIN---------EAVYDLPHLYK 102
            +  L L       L +      +++  L L +  L+  +          ++        
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
             +++  + ++   +  ++ LL L  S N+++S+P+ I   + SL  I    N     PW
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN-----PW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 6e-13
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L+ L L  N +  + ++    L +L  L L+ N L  ++ + +  L  L   N+  N  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 111 AKISDNI--GNLTSLLVLNISNN-KIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
             + +     +LT L +L + N      +       +  L  ++   + +     K    
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 167 FHQ 169
              
Sbjct: 197 IQN 199

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 56  VLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKIS 114
           +      +L  +P  +     +  L L+NN++  I+ +      +L    +++N I  I 
Sbjct: 35  ICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92

Query: 115 DNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVP 160
           ++   +L SL  L++S N + +L  +    + SLT ++   N    + 
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 52  LKLKVLNLQYNNLKGLP----DEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSN 107
           L+L+  +L   +   L     + +        + + +  L  + + +  +  L +   S 
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

Query: 108 NMIAKISDNI-GNLTSLLVLNISNNKIESLPENIGYMK 144
           N +  + D I   LTSL  + +  N  +     I Y+ 
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 324

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.9 bits (167), Expect = 3e-14
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)

Query: 53  KLKVLNLQYNNLKG---LPDEIRHLTNLNELAL-NNNQLE-MINEAVYDLPHLYKFNVSN 107
           ++  L+L   NL     +P  + +L  LN L +   N L   I  A+  L  L+   +++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 108 NMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
             ++  I D +  + +L+ L+ S N +  +LP +I  + +L  I    N IS
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNE-LALNNNQLE-MINEAVYDLPHLYKFNVSNNM 109
            L  +    N + G +PD     + L   + ++ N+L   I     +L +L   ++S NM
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208

Query: 110 IA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
           +    S   G+  +   ++++ N +   L + +G  K+L  +D  +N I 
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.1 bits (144), Expect = 5e-11
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)

Query: 57  LNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEM---INEAVYDLPHLYKFNVS--NNMI 110
            +       G L D       +N L L+   L     I  ++ +LP+L    +   NN++
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 111 AKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTIS 157
             I   I  LT L  L I++  +  ++P+ +  +K+L  +D S+N +S
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 52  LKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
           L L  ++L  N L+G          N  ++ L  N L      V    +L   ++ NN I
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

Query: 111 A-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHN 154
              +   +  L  L  LN+S N +   +P+  G ++       ++N
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            LK L L  N L  LP  +   LT L  L L  NQL ++  AV+D L HL +  +  N +
Sbjct: 65  NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
            ++   I  LT L  L +  N+++S+P      + SLTH     N     PW
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN-----PW 171

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 55  KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
           ++L L  N +  L   +   L NL EL L +NQL  +   V+D L  L   ++  N +  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF 164
           +   +   L  L  L +  NK+  LP  I  +  LTH+    N +  +P   F
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+VL L  N +  +   +  LTNL  L++ N Q+  +   + +L  L      +N I+ 
Sbjct: 130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD 187

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
           IS  + +L +L+ +++ NN+I  +   +    +L  +  ++ TI+  P    + 
Sbjct: 188 IS-PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNN 239

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            +K L+L    +  +   +  L+NL  L L+ NQ+  I   +  L +L   ++ N  ++ 
Sbjct: 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD 165

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           ++  + NL+ L  L   +NKI  +   +  + +L  +   +N IS V 
Sbjct: 166 LT-PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS 211

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           K+  L L  N LK +   I  L ++  L L + Q+  +   +  L +L    +  N I  
Sbjct: 86  KITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITN 143

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           IS  +  LT+L  L+I N ++  L   +  +  LT + A  N IS + 
Sbjct: 144 IS-PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDIS 189

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
               +    +N+         L  +  L+     +  I E V  L +L    + +N I  
Sbjct: 20  NAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITD 77

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
           ++  + NLT +  L +S N ++++   I  ++S+  +D +   I+
Sbjct: 78  LA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQIT 120

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 58  NLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNI 117
               N +   P     L N  ++A   + +        DL  +   +     +  I   +
Sbjct: 6   PTAINVIFPDP----ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GV 59

Query: 118 GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
             L +L+ L + +N+I  L   +  +  +T ++ S N + 
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLK 98

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 4/120 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KLK L+L++N +  +   + HL  L  L L NN++  I   +  L  L   ++ +N I+ 
Sbjct: 113 KLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD 170

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
           I   +  LT L  L +S N I  L   +  +K+L  ++         P    S      +
Sbjct: 171 IV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 8e-14
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L  L L  N +K L   ++ L  L  L+L +N +  I   +  LP L    + NN I  
Sbjct: 91  NLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITD 148

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
           I+  +  LT L  L++ +N+I  +   +  +  L ++  S N IS
Sbjct: 149 IT-VLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +    NL+  ++         L +++++  NN+ ++ + + +  LP++ K  ++ N +  
Sbjct: 25  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTD 82

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
           I   + NL +L  L +  NK++ L  ++  +K L  +   HN IS
Sbjct: 83  IK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGIS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 71  IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISN 130
                   +  L    +        +L  + +   +N+ I  +   I  L ++  L ++ 
Sbjct: 20  DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNG 77

Query: 131 NKIESLPENIGYMKSLTHIDASHNTIS 157
           NK+  + + +  +K+L  +    N + 
Sbjct: 78  NKLTDI-KPLANLKNLGWLFLDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KL  L+L+ N +  +   +  LT L  L L+ N +  +  A+  L +L    + +     
Sbjct: 157 KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 214

Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
              N   NL     +  ++  + + PE I         +   +   +  
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKPNVKWHLPEFTN 262

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 66.7 bits (162), Expect = 1e-13
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 9/126 (7%)

Query: 62  NNLKGLPDEIRHLTNLNELAL-NNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDNI-G 118
           +        +    NL EL + N   L+ +    +  L  L    +  + +  ++ +   
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77

Query: 119 NLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN------TISYVPWKLFSKFHQNRS 172
               L  LN+S N +ESL        SL  +  S N       + ++             
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPE 137

Query: 173 SRFGCA 178
            +  C 
Sbjct: 138 QKLQCH 143

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
           +L+ L +  + L+ +  +       L+ L L+ N LE ++        L +  +S N
Sbjct: 57  ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAKI 113
             L L  N    +P E+ +  +L  + L+NN++  ++   +  +  L    +S N +  I
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 114 SDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
                  L SL +L++  N I  +PE     + +L+H+    N     P 
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN-----PL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD----LPHLYKFN 104
           +L  L L YN L+ +P      L +L  L+L+ N + ++ E  ++    L HL    
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 54  LKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
             +LN+  N +  L    I  L+ L  L +++N+++ ++ +V+     L   ++S+N + 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           KIS       +L  L++S N  ++LP     G M  L  +  S   +        +  + 
Sbjct: 83  KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 170 NR 171
           ++
Sbjct: 141 SK 142

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIR--HLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
            L+ L++  N++     +       +L  L +++N L          P +   ++ +N I
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKI 433

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHN 154
             I   +  L +L  LN+++N+++S+P+ I   + SL  I    N
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 5e-11
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 8/123 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEIR---HLTNLNELALNNNQLEMI--NEAVYDLPHLYKFNVSN 107
           +L+ L LQ N LK L         + +L +L ++ N +              L   N+S+
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 108 NMIAKISDNIGNLTSLL-VLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
           N++         L   + VL++ +NKI+S+P+ +  +++L  ++ + N +  VP  +F +
Sbjct: 409 NILTDTIF--RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466

Query: 167 FHQ 169
              
Sbjct: 467 LTS 469

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L +  +  +        I    +N+N      +   M++      +      + SNN++
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 111 AKI-SDNIGNLTSLLVLNISNNKIESLPENIGY---MKSLTHIDASHNTISYVP 160
                +N G+LT L  L +  N+++ L +       MKSL  +D S N++SY  
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
           KL++L + +N ++ L   + +    L  L L++N+L  I+   +   +L   ++S N   
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFD 103

Query: 112 KISDN--IGNLTSLLVLNISNNKIESLP 137
            +      GN++ L  L +S   +E   
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSS 131

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 3/135 (2%)

Query: 53  KLKVLNLQYNNLKGLPD--EIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMI 110
            LK L+L +N    LP   E  +++ L  L L+   LE  +       ++ K  +     
Sbjct: 91  NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 111 AKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
               ++   L      ++            I  +   T  +   + I  V       +  
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 170 NRSSRFGCALIMNDF 184
           +  ++      +++ 
Sbjct: 211 SILAKLQTNPKLSNL 225

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 4/116 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
           KL  LNL YN L+ L   +   LT L  L L NNQL  +   V+D L  L K  +  N +
Sbjct: 60  KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
             +   +   LT L  L ++ N+++S+P      + +L  +  S N +  VP   F
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
           +L  L L  N L  LP  +  HLT L++L L  NQL+ +   V+D L  L +  ++ N +
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
             I       LT+L  L++S N+++S+P      +  L  I    N      +
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN-----QF 191

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
           ++ + L+L+   +  + +    L   + +  ++N++  + +    L  L    V+NN I 
Sbjct: 19  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC 77

Query: 112 KISDNIG-NLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVP 160
           +I + +   L  L  L ++NN +  L +   +  +KSLT++    N ++   
Sbjct: 78  RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.8 bits (153), Expect = 5e-13
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 56  VLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISD 115
           ++ L    ++    +  +     EL L   ++ +I      L      + S+N I K+ D
Sbjct: 1   MVKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-D 58

Query: 116 NIGNLTSLLVLNISNNKIESLPENIG-YMKSLTHIDASHNTIS 157
               L  L  L ++NN+I  + E +   +  LT +  ++N++ 
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
           +   ++   N ++ L      L  L  L +NNN++  I E +   LP L +  ++NN + 
Sbjct: 43  QFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

Query: 112 KISD--NIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDASHNTIS 157
           ++ D   + +L SL  L I  N + +        I  +  +  +D     + 
Sbjct: 102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 82  LNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIG 141
           L    +E       +     + ++    I  I +    L     ++ S+N+I  L +   
Sbjct: 4   LTAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFP 61

Query: 142 YMKSLTHIDASHNTISYVPWKLFSKFHQ 169
            ++ L  +  ++N I  +   L      
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPD 89

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
            L+ L +   ++       +  LT+L  L ++++  +      +  LP +   ++S N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
                 +  L  L  LNI  + +      I     L  + A   TI 
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIA 111
            +K L +   +     + I  L+NL  L +    +       +  L  L   ++S++   
Sbjct: 67  NIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 112 KIS-DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
                 I  L  +  +++S N   +    +  +  L  ++   + + 
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
             LN               + +L  + L N  +  +   +    ++    ++N      +
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYN 82

Query: 115 DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTIS 157
             I  L++L  L I    + S    N+  + SLT +D SH+   
Sbjct: 83  -PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 53  KLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            L +L++ ++        +I  L  +N + L+ N        +  LP L   N+  + + 
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH 172

Query: 112 KISDNIGNLTSLLVLNISNNKIESL 136
                I +   L  L   +  I   
Sbjct: 173 DYR-GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 74  LTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI 133
                   L  +    I EA   +  L    ++N  +  ++  I    ++  L I+N   
Sbjct: 22  FKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA 78

Query: 134 ESLPENIGYMKSLTHIDASHNTIS 157
            +    I  + +L  +      ++
Sbjct: 79  TNY-NPISGLSNLERLRIMGKDVT 101

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            LK L+L +N +  L   ++ LT L EL++N N+L+ +N        L +  + NN +  
Sbjct: 64  NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRD 120

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
              ++ +L +L +L+I NNK++S+   +G++  L  +D   N I+
Sbjct: 121 TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KL+ L++  N LK L         L+ L L+NN+L    +++  L +L   ++ NN +  
Sbjct: 86  KLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKS 142

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170
           I   +G L+ L VL++  N+I +    +  +K +  ID +       P K   + +  
Sbjct: 143 IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
             L  L L  N L+     + HL NL  L++ NN+L+ I   +  L  L   ++  N I 
Sbjct: 106 ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEIT 163

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPEN 139
                +  L  +  ++++  K  + P  
Sbjct: 164 NTG-GLTRLKKVNWIDLTGQKCVNEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 71  IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISN 130
              L N  +  L    +  +  +  +L  +  FN  N+ I  ++  +   T+L  L++S+
Sbjct: 15  DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSH 72

Query: 131 NKIESLPENIGYMKSLTHIDASHNTIS 157
           N+I  L   +  +  L  +  + N + 
Sbjct: 73  NQISDL-SPLKDLTKLEELSVNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L++L+++ N LK +   +  L+ L  L L+ N++      +  L  +   +++      
Sbjct: 129 NLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC-- 184

Query: 113 ISDNIGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFS 165
           +++ +     L + N   +       P  I    S            Y     + 
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYK 239

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 12/150 (8%)

Query: 29  LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQL 87
           L    +S  T        Q      LKVL++   +      +++R    L+ L L++N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 88  ----EMINEAV-YDLPHLYKFNVSNNMIAKISDNI----GNLTSLLVLNISNNKIESLPE 138
                +I+       P L    + N  +   S            L  L++S+N +     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 139 NIG--YMKSLTHIDASHNTISYVPWKLFSK 166
                +   L  ++ S   +  VP  L +K
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAK 275

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 8e-09
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 13/119 (10%)

Query: 53  KLKVLNLQYNNLKGLPDEI-----RHLTNLNELALNNNQLEMINEAVY----DLPHLYKF 103
            L  L+L  N   G    I          L  LAL N  +E  +            L   
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 104 NVSNNMIAKISDNIG--NLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           ++S+N +   +        + L  LN+S   ++ +P+ +     L+ +D S+N +   P
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP 290

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHL----TNLNELALNNNQLEMINEAV--YDLPHLYKFNVS 106
            L+VL L+   ++        L      L  L L++N L     A        L   N+S
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTI 156
              + ++   +     L VL++S N+++  P     +  + ++    N  
Sbjct: 262 FTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 29  LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNL--KGLPDEIRHL--TNLNELALNN 84
           L       DT +     +     L LK L ++   +  + L   +R L  + L EL L N
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 85  NQL---EMINEAVYDLPHLYKFNVSNNMIAKISDNIGNL-----TSLLVLNISNNKIESL 136
            ++             P L   N+ N   A     +  L       L VL+I+     + 
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 137 PEN-IGYMKSLTHIDASHNTIS 157
               +    +L+ +D S N   
Sbjct: 165 SCEQVRVFPALSTLDLSDNPEL 186

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 26/142 (18%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 25  ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNN 84
           AS +   +E+ +     E  ++       L  L+   +++  +   I  LT L +L   +
Sbjct: 21  ASEVAAAFEMQATDTISEEQLA------TLTSLDCHNSSITDMT-GIEKLTGLTKLICTS 73

Query: 85  NQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMK 144
           N +  ++  +    +L      +N +  +  ++  LT L  LN   NK+  L   +    
Sbjct: 74  NNITTLD--LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTKLD--VSQNP 127

Query: 145 SLTHIDASHNTISYVPWKLFSK 166
            LT+++ + NT++ +     ++
Sbjct: 128 LLTYLNCARNTLTEIDVSHNTQ 149

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L  L+   N      D +   T L  L  + N++  ++  V     L + N   N I K
Sbjct: 149 QLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK 205

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
           +  ++     L  L+ S+NK+  +   +  +  LT+ D S N ++ +     SK
Sbjct: 206 L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L  L+  +N +  L   +     LN L  + N +  ++  +     L   + S+N + +
Sbjct: 171 QLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE 226

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           I  ++  LT L   + S N +  L  +   +  LT +      +  + 
Sbjct: 227 I--DVTPLTQLTYFDCSVNPLTELDVST--LSKLTTLHCIQTDLLEID 270

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L +L+ Q   +  L   +     L  L LNN +L  ++  V     L   +  N  I  
Sbjct: 298 QLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD 353

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLT------HIDASHNTISYVP 160
            S ++G + +L     +  +  ++P+      SLT       +D   N ++  P
Sbjct: 354 FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 7/114 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KL  LN   N L  L   +     L  L    N L  I+  V     L + +   N    
Sbjct: 107 KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT 162

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
             D +   T L  L+ S NKI  L   +   K L  ++   N I+ +      +
Sbjct: 163 KLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQ 213

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +L   +   N L  L      L+ L  L      L  I+  +     L  F        K
Sbjct: 234 QLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIK 289

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
             D + + T L +L+     I  L   +     L ++  ++  ++ +     +K
Sbjct: 290 ELD-VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELDVSHNTK 340

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 74  LTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKI 133
             +    A      + I+E    L  L   +  N+ I  +   I  LT L  L  ++N I
Sbjct: 20  FASEVAAAFEMQATDTISEE--QLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNI 76

Query: 134 ESLPENIGYMKSLTHIDASHNTISYVP 160
            +L   +    +LT++    N ++ + 
Sbjct: 77  TTLD--LSQNTNLTYLACDSNKLTNLD 101

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 54  LKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQ-LEMI-NEAVYDLPHLYKFNVSN-NM 109
              L      L+ +         +L ++ ++ N  LE+I  +   +LP L++  +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNT-ISYVPWKLFSK 166
           +  I+     NL +L  L ISN  I+ LP+    +      +D   N  I  +    F  
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 167 FHQN 170
               
Sbjct: 152 LSFE 155

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALN-NNQLEMINEAVYD--LPHLYKFNVSNN 108
            L+ L +    +K LPD    H      L +  N  +  I    +           ++ N
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

Query: 109 MIAKISDNIGNLTSLLVLNIS-NNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
            I +I ++  N T L  LN+S NN +E LP ++         +D S   I  +P      
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMI-NEAVYDLPHLYKFNVSNNMI 110
           +  +L L  N ++ + +   + T L+EL L +NN LE + N+  +        ++S   I
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
             +      NL  L   +  N K   LP  +  + +L     ++ 
Sbjct: 215 HSLPSYGLENLKKLRARSTYNLK--KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 52  LKLKVLNLQYNN-LKGLPDE-IRHLT-NLNELALNNNQLEMINEAVYDLPHLYKFNVS-N 107
           L+  +L++Q N  +  +       L+     L LN N ++ I+ + ++   L + N+S N
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187

Query: 108 NMIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNT 155
           N + ++ +++    +  ++L+IS  +I SLP      +K L      +  
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKI 113
           +V   Q + +  +P ++    N  EL     +L +I + A      L K  +S N + ++
Sbjct: 12  RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 114 --SDNIGNLTSLLVLNISN-NKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
             +D   NL  L  + I   N +  +       + +L ++  S+  I ++P        Q
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 170 NR 171
             
Sbjct: 130 KV 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 29/111 (26%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
           +L  L+L  N ++ LPD +   LT L  L L+ N+L+ +   V+D               
Sbjct: 53  QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD--------------- 97

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
                   LT L  L +  N+++S+P+ I   + SL  I    N     PW
Sbjct: 98  -------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-----PW 136

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 54  LKVLNLQYNNLKGLP-DEIRHLTNLNELALN-NNQLEMINEAV-YDLPHLYKFNVSNN-M 109
            + L L   +L+ +P     +L N++ + ++ +  L+ +     Y+L  +    + N   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 110 IAKISDNI-GNLTSLLVLNISNNKIESLPEN--IGYMKSLTHIDASHNT-ISYVPWKLFS 165
           +  I  +    L  L  L I N  ++  P+   +        ++ + N  ++ +P   F 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152

Query: 166 K 166
            
Sbjct: 153 G 153

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 53  KLKVLNLQYNNLKGLPDE--IRHLTNLNELAL-NNNQLEMINEAVYD--LPHLYKFNVSN 107
            LK L +    LK  PD   +        L + +N  +  I    +           + N
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 108 NMIAKISDNIGNLTSLLVLNIS-NNKIESLPENI--GYMKSLTHIDASHNTISYVPWKLF 164
           N    +     N T L  + ++ N  +  + ++   G     + +D S  +++ +P K  
Sbjct: 166 NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

Query: 165 SK 166
             
Sbjct: 226 EH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 16/112 (14%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVS-NNMIA 111
            +   +   +++ +P       +   L L    L  I   A  +LP++ +  VS +  + 
Sbjct: 13  EEDFRVTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 112 KISDNI-GNLTSLLVLNISNNK-IESLPENI-GYMKSLTHIDASHNTISYVP 160
           ++  +   NL+ +  + I N + +  +  +    +  L  +   +  +   P
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMINEAVYD--LPHLYKFNVSNNMI 110
              L L  N    +     + T L+ + L  N  L +I++  +          +VS   +
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

Query: 111 AKISDNI-GNLTSLLVLN 127
             +      +L  L+  N
Sbjct: 218 TALPSKGLEHLKELIARN 235

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 29/111 (26%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            L  L L+ N L G+        +++ EL L  N+++ I+  ++                
Sbjct: 55  HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL--------------- 99

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
                   L  L  LN+ +N+I  +      ++ SLT ++ + N     P+
Sbjct: 100 -------GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-----PF 138

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 9/113 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            LK L L  N L+ LPD +   LTNL  L L +NQL+ + + V+D L +L + ++S N +
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
             + + +   LT L  L +  N+++S+P+ +   + SL +I    N     PW
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-----PW 217

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMI 110
            L  L L  N L+ LP+ +   LTNL EL L  NQL+ + + V+D L +L   N+++N +
Sbjct: 86  NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145

Query: 111 AKISDNI-GNLTSLLVLNISNNKIESLPE 138
             +   +   LT+L  L++S N+++SLPE
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPE 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 50  PVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNN 108
            +  +  +    +++K +   I++L N+  LAL  N+L  I  +    L +L    ++ N
Sbjct: 39  ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95

Query: 109 MIAKISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLFSK 166
            +  + + +   LT+L  L +  N+++SLP+ +   + +LT+++ +HN +  +P  +F K
Sbjct: 96  QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 29/111 (26%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
            L  LNL  N L+ LP+ +   LT L ELALN NQL+ + + V+D               
Sbjct: 77  SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD--------------- 121

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
                   LT L  L +  N+++S+P+ +   + SL +I    N     PW
Sbjct: 122 -------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-----PW 160

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 4/114 (3%)

Query: 55  KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
             L+L+ N+LK LP+ +   LT+L +L L  N+L+ +   V++ L  L   N+S N +  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 113 ISDNI-GNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPWKLF 164
           + + +   LT L  L ++ N+++SLP+ +   +  L  +    N +  VP  +F
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 29/109 (26%)

Query: 55  KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           +VL L  N +  L   +   LT L  L L+NNQL ++   V+D                 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD----------------- 75

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
                 LT L  L++++N+++S+P      +KSLTHI   +N     PW
Sbjct: 76  -----KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN-----PW 114

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.7 bits (109), Expect = 9e-07
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD----LPHLYKFN 104
           +L  L+L  N L  LP  +   LT L +L+LN+NQL+ I    +D    L H++  N
Sbjct: 55  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 72  RHLTNLNELALNNNQLEMIN--EAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNIS 129
           R  +++ EL L+N++           +   L   +  N  +  I+ N+  L  L  L +S
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELS 72

Query: 130 NNKIESLPENIG-YMKSLTHIDASHNTIS 157
           +N++    E +     +LTH++ S N I 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 49  EPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
             V +L + N + N  K L         L  L+  N  L  I   +  L  L K  +S+N
Sbjct: 17  SDVKELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN 74

Query: 109 MIAKISDNIG-NLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVP 160
            ++   + +     +L  LN+S NKI+ L     +  +++L  +D  +  ++ + 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 8/105 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
           +L+ L+     L  + + +  L  L +L L++N++    E + +  P+L   N+S N I 
Sbjct: 43  ELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

Query: 112 KISD--NIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHID 150
            +S    +  L +L  L++ N ++ +L +        +  LT++D
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIA 111
            L+ L+L    L  + + +  L  L +L L+ N++    + + + LP+L   N+S N + 
Sbjct: 50  NLEFLSLINVGLISVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 112 KISD--NIGNLTSLLVLNISNNKIESLPEN----IGYMKSLTHID 150
            IS    +  L  L  L++ N ++ +L +        +  LT++D
Sbjct: 109 DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 56  VLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISD 115
           VL+   +N   +        NL  L+L N  L  +   +  LP L K  +S N I    D
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLD 88

Query: 116 NIG-NLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVP 160
            +   L +L  LN+S NK++ +     +  ++ L  +D  +  ++ + 
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 83  NNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY 142
               LE+ N     +  L   N  +N   KI        +L  L++ N  + S+  N+  
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPK 69

Query: 143 MKSLTHIDASHNTISYVPWKLFSKFHQ 169
           +  L  ++ S N I      L  K   
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPN 96

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVY--DLPHLYKFNVSNNM 109
           KLK L L  N + G  D +   L NL  L L+ N+L+ I+       L  L   ++ N  
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 110 IAKISDN----IGNLTSLLVLNISNNKIESLPE 138
           +  ++D        L  L  L+  + + +  P+
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 29/109 (26%)

Query: 55  KVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
           + L L  N +  L   +  HL NL +L  N+N+L  I   V+D                 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD----------------- 78

Query: 114 SDNIGNLTSLLVLNISNNKIESLPENI-GYMKSLTHIDASHNTISYVPW 161
                 LT L  L++++N ++S+P      +KSLTHI   +N     PW
Sbjct: 79  -----KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN-----PW 117

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQLEMINEAVYD----LPHLYKFN 104
            L+ L    N L  +P  +   LT L +L LN+N L+ I    +D    L H+Y +N
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 26/130 (20%)

Query: 54  LKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLPHLYKF 103
           ++  +L+ + +     K +   +    ++ E+ L+ N +       ++E +     L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 104 NVSNNMIAKISDNIG-----------NLTSLLVLNISNNKI-----ESLPENIGYMKSLT 147
             S+    ++ D I                L  + +S+N       E L + +     L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 148 HIDASHNTIS 157
           H+   +N + 
Sbjct: 126 HLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 14/129 (10%), Positives = 42/129 (32%), Gaps = 27/129 (20%)

Query: 54  LKVLNLQYNNL-----KGLPDEIRHLTNLNELALNNNQL------EMINEAVYDLPHLYK 102
           L+ +    N L     K      +    L+ + +  N +       ++ E +     L  
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 103 FNVSNNMI-----AKISDNIGNLTSLLVLNISNNKI---------ESLPENIGYMKSLTH 148
            ++ +N       + ++  + +  +L  L +++  +         ++  +       L  
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--LENIGLQT 278

Query: 149 IDASHNTIS 157
           +   +N I 
Sbjct: 279 LRLQYNEIE 287

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 54  LKVLNLQYNNL--KGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLPHLYKFNVS 106
           ++ L++Q   L      + +  L     + L++  L     + I+ A+   P L + N+ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 107 NNMI-----AKISDNIGNL-TSLLVLNISNNKI-----ESLPENIGYMKSLTHIDASHNT 155
           +N +       +   +      +  L++ N  +       L   +  + +L  +  S N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 156 ISYVPWKLFSKFHQNRSSR 174
           +     +L  +   +   R
Sbjct: 125 LGDAGLQLLCEGLLDPQCR 143

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 54 LKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQL 87
             L L  NNL  LP  +   L  L    L  N  
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.74
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.74
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.72
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.72
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.72
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.7
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.7
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.69
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.64
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.64
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.42
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.77
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.76

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=7.1e-21  Score=146.66  Aligned_cols=141  Identities=23%  Similarity=0.230  Sum_probs=82.3

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccc-cchhhh
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE-MINEAV   94 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~   94 (184)
                      +..++..+..++.|+.|++++|.+.  .+|..+..+++|++|++++|.++.+|..+..+++|++|++++|++. .+|..+
T Consensus        93 l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A           93 LPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             CSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred             chhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence            3455555666667777777766665  5566666666677777777766666666666666666666665432 444433


Q ss_pred             cC---------CCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785          95 YD---------LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        95 ~~---------l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      ..         +++|++|++++|.++.+|..++.++.|+.+++++|.++.+|..++.+++|+.+++++|.+.+
T Consensus       171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~  243 (328)
T 4fcg_A          171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR  243 (328)
T ss_dssp             EEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC
T ss_pred             hhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh
Confidence            22         55555555555555555555555555555555555555555445555555555555554444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=5.9e-20  Score=136.32  Aligned_cols=163  Identities=24%  Similarity=0.306  Sum_probs=112.6

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-h
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-E   92 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~   92 (184)
                      .+.++|..+.  +.++.|++++|.+.. ..+..+..+++|++|++++|.+++++ ..+..+++|++|++++|.++.++ .
T Consensus        25 ~l~~~p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  101 (251)
T 3m19_A           25 SLDSVPSGIP--ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG  101 (251)
T ss_dssp             CCSSCCSCCC--TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CccccCCCCC--CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence            3444554443  567777777777765 44556777777778888777777754 34677777778888777777665 3


Q ss_pred             hhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785          93 AVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQN  170 (184)
Q Consensus        93 ~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l  170 (184)
                      .+..+++|++|++++|.++.++. .+..++.|+.|++++|.++.++. .+..+++|+.+++++|.+++++...+..++.+
T Consensus       102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            34567777777777777776654 35677777777777777777665 46677777777777777777776666666777


Q ss_pred             cccccccccc
Q psy3785         171 RSSRFGCALI  180 (184)
Q Consensus       171 ~~~~~~~~~~  180 (184)
                      +.+.++.|.+
T Consensus       182 ~~L~l~~N~~  191 (251)
T 3m19_A          182 QTITLFGNQF  191 (251)
T ss_dssp             CEEECCSCCB
T ss_pred             CEEEeeCCce
Confidence            7666655443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=1.7e-19  Score=136.10  Aligned_cols=161  Identities=20%  Similarity=0.265  Sum_probs=127.5

Q ss_pred             ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCC
Q psy3785          20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDL   97 (184)
Q Consensus        20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l   97 (184)
                      +..+..+++|+.|++++|.......+..+..+++|++|++++|.++++ |..+..+++|++|++++|.++.++.. +..+
T Consensus        73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  152 (285)
T 1ozn_A           73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL  152 (285)
T ss_dssp             TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence            456677788888888888633324467777888888888888888886 55577888888888888888877643 6678


Q ss_pred             CCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785          98 PHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus        98 ~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      ++|+.|++++|.++.++. .+..++.|+.+++++|.++.+ |..+..+++|+.+++++|.+++++...+..++.++.+.+
T Consensus       153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence            889999999988887764 578888999999999988866 666788899999999999999988887888888887777


Q ss_pred             ccccc
Q psy3785         176 GCALI  180 (184)
Q Consensus       176 ~~~~~  180 (184)
                      +.|.+
T Consensus       233 ~~N~~  237 (285)
T 1ozn_A          233 NDNPW  237 (285)
T ss_dssp             CSSCE
T ss_pred             cCCCc
Confidence            65544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=4.5e-20  Score=142.17  Aligned_cols=139  Identities=17%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhC---------CCCCCEEEcccCcc
Q psy3785          18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRH---------LTNLNELALNNNQL   87 (184)
Q Consensus        18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~---------l~~L~~L~l~~n~l   87 (184)
                      .++..++.+++|+.|++++|.+.  .+|..+..+++|++|++++|.+.+ +|..+..         +++|++|++++|.+
T Consensus       118 ~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l  195 (328)
T 4fcg_A          118 ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI  195 (328)
T ss_dssp             CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred             chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc
Confidence            44444555555555555555544  345555555555555555543332 3433322         44555555555554


Q ss_pred             ccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC
Q psy3785          88 EMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        88 ~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      +.+|..+..+++|+.|++++|.++.+|+.+..++.|+.+++++|.+. .+|..++.+++|+.+++++|.+.+
T Consensus       196 ~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred             CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence            44444444444555555555544444444444444444444444433 333334444444444444444333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=4.6e-19  Score=132.86  Aligned_cols=156  Identities=21%  Similarity=0.275  Sum_probs=117.1

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccch-hhhcCCCC
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMIN-EAVYDLPH   99 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~   99 (184)
                      .+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|.++.++ ..+..+++
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  134 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK  134 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence            56677888888888887763 333445677888888888888887754 3577788888888888888665 34567888


Q ss_pred             ceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785         100 LYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC  177 (184)
Q Consensus       100 l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~  177 (184)
                      |++|++++|.++.++. .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.++.+|...+..++.++.+.++.
T Consensus       135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence            8888888888887754 467788888888888888877653 66788888888888888888777777777777666654


Q ss_pred             c
Q psy3785         178 A  178 (184)
Q Consensus       178 ~  178 (184)
                      |
T Consensus       215 N  215 (270)
T 2o6q_A          215 N  215 (270)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=9.3e-20  Score=138.17  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=108.1

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPH   99 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~   99 (184)
                      ..+..+++|+.|++++|.+..  ++.. ..+++|+.|++++|.++.+|..+..+++|++|++++|+++.+| ..+..+++
T Consensus        49 ~~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~  125 (290)
T 1p9a_G           49 ATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE  125 (290)
T ss_dssp             GGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT
T ss_pred             HHhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC
Confidence            445667777777777777653  2332 5677777888888877777777777788888888888888776 44667778


Q ss_pred             ceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785         100 LYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG  176 (184)
Q Consensus       100 l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~  176 (184)
                      |++|++++|.++.+|. .+..+++|+.+++++|.++.+|.. +..+++|+.+++++|.++.+|..++.. ..++.+.+.
T Consensus       126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-~~L~~l~L~  203 (290)
T 1p9a_G          126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLH  203 (290)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CCCSEEECC
T ss_pred             CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc-ccCCeEEeC
Confidence            8888888888877654 456777888888888888877654 456778888888888888887766553 244444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=6.2e-19  Score=132.13  Aligned_cols=163  Identities=22%  Similarity=0.340  Sum_probs=139.4

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchh-
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINE-   92 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~-   92 (184)
                      .+..+|..+  .+.++.|++++|.+.. ..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|. 
T Consensus        27 ~l~~ip~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  103 (270)
T 2o6q_A           27 KLTAIPSNI--PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG  103 (270)
T ss_dssp             CCSSCCSCC--CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccCCCC--CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence            344555544  3689999999999875 4456889999999999999999998765 5789999999999999998874 


Q ss_pred             hhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785          93 AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQN  170 (184)
Q Consensus        93 ~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l  170 (184)
                      .+..+++|++|++++|.++.++ ..+..++.|+.+++++|.++.++.. +..+++|+.+++++|.++.++...+..++.|
T Consensus       104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  183 (270)
T 2o6q_A          104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL  183 (270)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence            4567999999999999999875 4578999999999999999988765 6889999999999999999988888888899


Q ss_pred             cccccccccc
Q psy3785         171 RSSRFGCALI  180 (184)
Q Consensus       171 ~~~~~~~~~~  180 (184)
                      +.+.++.+.+
T Consensus       184 ~~L~L~~N~l  193 (270)
T 2o6q_A          184 KTLKLDNNQL  193 (270)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEECCCCcC
Confidence            9888877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=5.4e-19  Score=133.26  Aligned_cols=159  Identities=20%  Similarity=0.226  Sum_probs=120.5

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-cccC-chhhhCCCCCCEEEcccCccccc-hhhhcCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDL   97 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l-p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l   97 (184)
                      ..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|. +..+ |..+..+++|++|++++|.++.+ +..+..+
T Consensus        50 ~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  128 (285)
T 1ozn_A           50 ASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL  128 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             HHcccCCCCCEEECCCCccce-eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence            346777888888888887664 446677778888888888886 7776 56677788888888888888866 3556678


Q ss_pred             CCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785          98 PHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus        98 ~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      ++|++|++++|.++.++. .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.+++++...+..++.|+.+.+
T Consensus       129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (285)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence            888888888888887754 477788888888888888877653 677888888888888888865555566777777777


Q ss_pred             ccccc
Q psy3785         176 GCALI  180 (184)
Q Consensus       176 ~~~~~  180 (184)
                      +.+.+
T Consensus       209 ~~n~l  213 (285)
T 1ozn_A          209 FANNL  213 (285)
T ss_dssp             CSSCC
T ss_pred             CCCcC
Confidence            76654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=6.7e-19  Score=133.44  Aligned_cols=151  Identities=21%  Similarity=0.248  Sum_probs=77.9

Q ss_pred             ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcc
Q psy3785          27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVS  106 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~  106 (184)
                      +.++.|++++|.+.. ..+..+..+++|+.|++++|.++.++.. ..+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus        31 ~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence            455555555555443 2344455555555555555555554332 44555555555555555555444455555555555


Q ss_pred             ccccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785         107 NNMIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       107 ~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      +|+++.++ ..+..++.|+.+++++|.++.+|.. +..+++|+.+++++|.++.+|...+..++.|+.+.++.|.
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence            55555443 3345555555555555555544432 3445555555555555555555555555555555554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=1.2e-19  Score=138.98  Aligned_cols=158  Identities=20%  Similarity=0.320  Sum_probs=91.5

Q ss_pred             cccCCCcCccccEEEeec-CCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc
Q psy3785          19 LVGSASASALLYTYEISS-DTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY   95 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~   95 (184)
                      ++..+..++.|+.|++++ |.+.+ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.++ .+|..+.
T Consensus        68 ~~~~l~~l~~L~~L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           68 IPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             cChhHhCCCCCCeeeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            455566666666666663 55544 456666666666666666666663 5666666666666666666666 4555566


Q ss_pred             CCCCceEEEccccccc-cchhhhcCCC-CCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccc
Q psy3785          96 DLPHLYKFNVSNNMIA-KISDNIGNLT-SLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS  172 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~-~~~~~~~~~~-~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~  172 (184)
                      .+++|++|++++|.++ .+|..+..++ .|+.+++++|.++ .+|..+..++ |+.+++++|.+++.+...+..++.++.
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~  225 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence            6666666666666665 4555566655 6666666666655 4444444443 555555555555433333344444444


Q ss_pred             cccccc
Q psy3785         173 SRFGCA  178 (184)
Q Consensus       173 ~~~~~~  178 (184)
                      +.++.+
T Consensus       226 L~L~~N  231 (313)
T 1ogq_A          226 IHLAKN  231 (313)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            444333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=1.5e-18  Score=127.15  Aligned_cols=142  Identities=25%  Similarity=0.295  Sum_probs=124.2

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA   93 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~   93 (184)
                      .+..+|..+  .++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.++.++..
T Consensus        30 ~l~~ip~~~--~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  106 (229)
T 3e6j_A           30 RHASVPAGI--PTNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA  106 (229)
T ss_dssp             CCSSCCSCC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CcCccCCCC--CCCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence            345566544  4899999999999886 5578889999999999999999998754 68899999999999999988754


Q ss_pred             -hcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCC
Q psy3785          94 -VYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYV  159 (184)
Q Consensus        94 -~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~  159 (184)
                       +..+++|+.|++++|.++.+|..+..++.|+.+++++|.++.++. .+..+++|+.+++++|++.+.
T Consensus       107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence             568999999999999999999889999999999999999998875 478899999999999999873

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=1.2e-18  Score=130.69  Aligned_cols=156  Identities=24%  Similarity=0.326  Sum_probs=124.9

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh-hcCCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA-VYDLP   98 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~l~   98 (184)
                      ..+..+++|+.|++++|.+.+   .+.+..+++|++|++++|.+++++.. +..+++|++|++++|.++.++.. +..++
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  133 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT  133 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCC---CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cccccCCCCcEEECCCCCCCC---chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence            346678889999999888775   24677888999999999998887544 67888999999999988877644 56788


Q ss_pred             CceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785          99 HLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG  176 (184)
Q Consensus        99 ~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~  176 (184)
                      +|++|++++|.++.+++ .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.+++++...+..++.|+.+.++
T Consensus       134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence            89999999998887754 467888899999999988877654 5778889999999999988877777777888877776


Q ss_pred             ccc
Q psy3785         177 CAL  179 (184)
Q Consensus       177 ~~~  179 (184)
                      .|.
T Consensus       214 ~N~  216 (272)
T 3rfs_A          214 DNP  216 (272)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=4.2e-18  Score=130.02  Aligned_cols=149  Identities=21%  Similarity=0.266  Sum_probs=83.2

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY  101 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~  101 (184)
                      .+..+++|+.|++++|.+..  +++ +..+++|++|++++|.+++++ .+..+++|+.|++++|.++.++. +..+++|+
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  132 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ  132 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred             hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence            35556666666666666553  233 556666666666666666654 35556666666666666665543 45555666


Q ss_pred             EEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785         102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      .|++++|.++.++. +..++.|+.+++++|.++.++. +..+++|+.+++++|.+++++.  +..++.|+.+.++.+.
T Consensus       133 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          133 VLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred             EEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence            66666666555433 5555555555555555555444 4455555555555555555443  3344444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=4.2e-19  Score=135.87  Aligned_cols=159  Identities=20%  Similarity=0.269  Sum_probs=87.1

Q ss_pred             ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc
Q psy3785          18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY   95 (184)
Q Consensus        18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~   95 (184)
                      .++..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.++ .+|..+.
T Consensus        92 ~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  170 (313)
T 1ogq_A           92 PIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             cCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence            355556667777777777776654 456666666666667766666663 5666666666666666666666 5555555


Q ss_pred             CCC-CceEEEccccccc-cchh-----------------------hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEe
Q psy3785          96 DLP-HLYKFNVSNNMIA-KISD-----------------------NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHID  150 (184)
Q Consensus        96 ~l~-~l~~L~l~~n~~~-~~~~-----------------------~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~  150 (184)
                      .+. +|+.|++++|.++ .+|.                       .+..++.|+.+++++|.++..+..+..+++|+.++
T Consensus       171 ~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~  250 (313)
T 1ogq_A          171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD  250 (313)
T ss_dssp             CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred             hhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEE
Confidence            555 5666666665554 2233                       33344444444444444443322234445555555


Q ss_pred             ccCCCCCC-CcHHHhhhhhcccccccccc
Q psy3785         151 ASHNTISY-VPWKLFSKFHQNRSSRFGCA  178 (184)
Q Consensus       151 L~~n~l~~-~~~~~~~~~~~l~~~~~~~~  178 (184)
                      +++|.+++ +|. .+..++.++.+.++.|
T Consensus       251 Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          251 LRNNRIYGTLPQ-GLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCSSCCEECCCG-GGGGCTTCCEEECCSS
T ss_pred             CcCCcccCcCCh-HHhcCcCCCEEECcCC
Confidence            55555553 333 2233444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=4.1e-18  Score=126.36  Aligned_cols=138  Identities=23%  Similarity=0.319  Sum_probs=122.9

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccchhh-hcCCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEA-VYDLP   98 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~   98 (184)
                      ..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+| ..+..+++|++|++++|.++.++.. +..++
T Consensus        53 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  131 (251)
T 3m19_A           53 ATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT  131 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC
Confidence            457889999999999999886 55677889999999999999999986 4578899999999999999988755 56799


Q ss_pred             CceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCC
Q psy3785          99 HLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYV  159 (184)
Q Consensus        99 ~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~  159 (184)
                      +|+.|++++|.++.+++ .+..++.|+.+++++|.++.++. .+..+++|+.+++++|++.+.
T Consensus       132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999999998865 68899999999999999998875 578899999999999999875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.78  E-value=1.2e-18  Score=147.57  Aligned_cols=159  Identities=24%  Similarity=0.368  Sum_probs=89.9

Q ss_pred             cccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc-
Q psy3785          19 LVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY-   95 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~-   95 (184)
                      ++..+..+++|+.|++++|.+.+ .+|..++.+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+. 
T Consensus       482 ~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          482 IPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred             CCHHHhcCCCCCEEEccCCccCC-cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence            33444555555555555555554 445555555566666666665553 4555555566666666655554 3332221 


Q ss_pred             ---------------------------------------------------------------------CCCCceEEEcc
Q psy3785          96 ---------------------------------------------------------------------DLPHLYKFNVS  106 (184)
Q Consensus        96 ---------------------------------------------------------------------~l~~l~~L~l~  106 (184)
                                                                                           .+++++.|+++
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs  640 (768)
T 3rgz_A          561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS  640 (768)
T ss_dssp             TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred             ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence                                                                                 12345566666


Q ss_pred             ccccc-cchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC-CcHHHhhhhhccccccccccc
Q psy3785         107 NNMIA-KISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY-VPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       107 ~n~~~-~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      +|.++ .+|..++.++.|+.+++++|.++ .+|..++.++.|+.+++++|.+++ +|. .+..+..|+.+.++.|.
T Consensus       641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCSEEECCSSE
T ss_pred             CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECcCCc
Confidence            66655 44666666666666666666666 556666666666666666666665 443 33445555555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=2.8e-18  Score=122.90  Aligned_cols=151  Identities=14%  Similarity=0.114  Sum_probs=129.4

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCcccc-chhhhcCCCCceE
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEM-INEAVYDLPHLYK  102 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~l~~  102 (184)
                      +.++.|+.+++++|.+.  .+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            56789999999999987  445 6888999999999999877764 68889999999999999985 5677788999999


Q ss_pred             EEcccccccc-chhhhcCCCCCCEEEccCCC-CCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         103 FNVSNNMIAK-ISDNIGNLTSLLVLNISNNK-IESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       103 L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~-l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      |++++|.++. .+..+..++.|+.+++++|. ++.++ .+..+++|+.+++++|.++.++  .+..++.|+.+.+.+|.+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            9999999985 57789999999999999998 88887 5888999999999999999987  456778899999888876


Q ss_pred             c
Q psy3785         181 M  181 (184)
Q Consensus       181 ~  181 (184)
                      -
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=7.6e-19  Score=131.87  Aligned_cols=157  Identities=21%  Similarity=0.238  Sum_probs=100.2

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccchh-hhcCCCC
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINE-AVYDLPH   99 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~   99 (184)
                      .+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+++++ ..+..+++|++|++++|.++.++. .+..+++
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             HhccccCCcEEECCCCcCCc-cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence            55667777777777776553 33445666677777777777776653 446666667777777666665543 4555666


Q ss_pred             ceEEEcccccccc--chhhhcCCCCCCEEEccCCCCCCcc----------------------------hhhhcCCCCCEE
Q psy3785         100 LYKFNVSNNMIAK--ISDNIGNLTSLLVLNISNNKIESLP----------------------------ENIGYMKSLTHI  149 (184)
Q Consensus       100 l~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l~~l~----------------------------~~~~~~~~L~~l  149 (184)
                      |++|++++|.++.  +|..+..++.|+.+++++|.++.++                            .......+|+.+
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L  205 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL  205 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEE
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEE
Confidence            6666666666664  4556666666666666666665432                            222223367778


Q ss_pred             eccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785         150 DASHNTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       150 ~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      ++++|.++++|...+..++.++.+.++.|.
T Consensus       206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             ECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             ECCCCceeecCHhHhcccccccEEEccCCc
Confidence            888888888777777777777766665443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=4.4e-19  Score=130.60  Aligned_cols=157  Identities=15%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             CCCcCccccEEEeecCC-CCCCCCcccccCCCCccEEEecC-CccccCc-hhhhCCCCCCEEEcccCccccchhhhcCCC
Q psy3785          22 SASASALLYTYEISSDT-GSGESNMSQSEPVLKLKVLNLQY-NNLKGLP-DEIRHLTNLNELALNNNQLEMINEAVYDLP   98 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~   98 (184)
                      .+..+++|+.|++++|. +.. ..+..+..+++|++|++++ |.++.+| ..+..+++|++|++++|.++.+|. +..+.
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccc
Confidence            45566666666666665 332 2233555666666666666 6666654 335566666666666666666554 44455


Q ss_pred             Cce---EEEcccc-ccccchh-hhcCCCCCC-EEEccCCCCCCcchhhhcCCCCCEEeccCCC-CCCCcHHHhhhh-hcc
Q psy3785          99 HLY---KFNVSNN-MIAKISD-NIGNLTSLL-VLNISNNKIESLPENIGYMKSLTHIDASHNT-ISYVPWKLFSKF-HQN  170 (184)
Q Consensus        99 ~l~---~L~l~~n-~~~~~~~-~~~~~~~L~-~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~-l~~~~~~~~~~~-~~l  170 (184)
                      +++   .+++++| .++.++. .+.+++.|+ .+++++|.++.+|......++|+.+++++|+ ++.++...+..+ +.+
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L  207 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP  207 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence            554   6666666 6665543 356666666 6666666666665543333566666666663 666655555555 566


Q ss_pred             cccccccccc
Q psy3785         171 RSSRFGCALI  180 (184)
Q Consensus       171 ~~~~~~~~~~  180 (184)
                      +.+.++.+.+
T Consensus       208 ~~L~l~~N~l  217 (239)
T 2xwt_C          208 SLLDVSQTSV  217 (239)
T ss_dssp             SEEECTTCCC
T ss_pred             cEEECCCCcc
Confidence            6555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=5.8e-18  Score=129.27  Aligned_cols=155  Identities=20%  Similarity=0.273  Sum_probs=131.7

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY   95 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~   95 (184)
                      +..++. +..+++|+.|++++|.+..  + +.+..+++|++|++++|.+++++. +..+++|+.|++++|.++.++. +.
T Consensus        75 i~~~~~-~~~l~~L~~L~L~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~  148 (308)
T 1h6u_A           75 ITDLAP-LKNLTKITELELSGNPLKN--V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LA  148 (308)
T ss_dssp             CCCCGG-GTTCCSCCEEECCSCCCSC--C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred             CCCChh-HccCCCCCEEEccCCcCCC--c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-cc
Confidence            344444 7889999999999999875  3 468889999999999999999865 8889999999999999998765 67


Q ss_pred             CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785          96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      .+++|+.|++++|.++.++. +..++.|+.+++++|.++.++. +..++.|+.+++++|.+++++.  +..++.|+.+.+
T Consensus       149 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l  224 (308)
T 1h6u_A          149 GLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL  224 (308)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred             CCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEc
Confidence            88999999999999998866 8899999999999999998876 7888999999999999999874  566778887777


Q ss_pred             ccccc
Q psy3785         176 GCALI  180 (184)
Q Consensus       176 ~~~~~  180 (184)
                      +.+.+
T Consensus       225 ~~N~i  229 (308)
T 1h6u_A          225 TNQTI  229 (308)
T ss_dssp             EEEEE
T ss_pred             cCCee
Confidence            76654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.78  E-value=1.4e-18  Score=121.35  Aligned_cols=137  Identities=20%  Similarity=0.270  Sum_probs=122.1

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCcccc-chhhhcCCCCceE
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEM-INEAVYDLPHLYK  102 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~l~~  102 (184)
                      ...+.++.|++++|.+....+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|+.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            45688999999999988557888889999999999999999988 678889999999999999997 6666667999999


Q ss_pred             EEccccccccch--hhhcCCCCCCEEEccCCCCCCcch----hhhcCCCCCEEeccCCCCCCCcH
Q psy3785         103 FNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDASHNTISYVPW  161 (184)
Q Consensus       103 L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~----~~~~~~~L~~l~L~~n~l~~~~~  161 (184)
                      |++++|.++.++  ..+..++.|+.+++++|.++.++.    .+..+++|+.+++++|.+..+|.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            999999999875  678999999999999999998876    68889999999999999988775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=5.9e-18  Score=124.05  Aligned_cols=147  Identities=23%  Similarity=0.293  Sum_probs=126.7

Q ss_pred             ccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEcc
Q psy3785          29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVS  106 (184)
Q Consensus        29 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~  106 (184)
                      -+.++.+++...  .+|..+.  ++|+.|++++|.++++ |..+..+++|+.|++++|.++.+|.. +..+++|+.|+++
T Consensus        21 ~~~v~c~~~~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA--SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC--ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            346777766655  5666543  8899999999999997 66789999999999999999988754 5689999999999


Q ss_pred             ccccccchh-hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785         107 NNMIAKISD-NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       107 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      +|.++.++. .+..++.|+.+++++|.++.+|..+..+++|+.+++++|.++.++...+..++.++.+.+..|.
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            999998864 4789999999999999999999989999999999999999999988888888888877776554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=6.9e-18  Score=127.90  Aligned_cols=150  Identities=21%  Similarity=0.245  Sum_probs=118.8

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY  101 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~  101 (184)
                      .+..+++|+.|++++|.+.+  +++ +..+++|++|++++|.++++|. +..+++|+.|++++|.++.++ .+..+++|+
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~  137 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLE  137 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCC
T ss_pred             hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCC
Confidence            46677888888888888774  333 7788888888888888888654 778888888888888888763 466788888


Q ss_pred             EEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      .|++++|.++.+ +.+..++.|+.+++++|.++.++. +..+++|+.+++++|.++.++.  +..++.|+.+.++++.+
T Consensus       138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEE
T ss_pred             EEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcc
Confidence            888888888877 567788888899998888887766 7788888999999998888764  56677777777776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=3.9e-18  Score=140.63  Aligned_cols=154  Identities=23%  Similarity=0.306  Sum_probs=130.4

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE-   92 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~-   92 (184)
                      .+.++|..+  .+.++.|++++|.+.. ..+..+.++++|++|++++|.++++|+ .|.++++|++|++++|+++.+|. 
T Consensus        42 ~l~~vP~~l--p~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~  118 (635)
T 4g8a_A           42 NFYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG  118 (635)
T ss_dssp             CCSSCCSSS--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred             CcCccCCCC--CcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence            456677655  3589999999999884 445689999999999999999999865 58999999999999999998874 


Q ss_pred             hhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCC--cchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhc
Q psy3785          93 AVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ  169 (184)
Q Consensus        93 ~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~  169 (184)
                      .+..+.+|++|++++|.++.+++ .+++++.|+.|++++|.++.  +|..++.++.|+.+++++|.+++++...+..+..
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  198 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  198 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence            56789999999999999998865 58999999999999999984  5677889999999999999999976655555544


Q ss_pred             cc
Q psy3785         170 NR  171 (184)
Q Consensus       170 l~  171 (184)
                      +.
T Consensus       199 l~  200 (635)
T 4g8a_A          199 MP  200 (635)
T ss_dssp             CT
T ss_pred             hh
Confidence            43

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=3.8e-18  Score=124.36  Aligned_cols=142  Identities=19%  Similarity=0.299  Sum_probs=122.5

Q ss_pred             ccccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchh
Q psy3785          14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINE   92 (184)
Q Consensus        14 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~   92 (184)
                      ..+..+|..+.  +.++.|++++|.+.. ..+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|.
T Consensus        21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~   97 (220)
T 2v9t_B           21 KGLTEIPTNLP--ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK   97 (220)
T ss_dssp             SCCSSCCSSCC--TTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CCcCcCCCccC--cCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH
Confidence            34555666553  789999999999875 4455788899999999999999996 7789999999999999999998886


Q ss_pred             h-hcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCC
Q psy3785          93 A-VYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        93 ~-~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~  158 (184)
                      . +..+++|+.|++++|.++.+ +..+..++.|+.+++++|.++.++. .+..+++|+.+++++|++..
T Consensus        98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            5 46799999999999999977 5678899999999999999998875 47789999999999999977

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=6.7e-18  Score=131.55  Aligned_cols=152  Identities=22%  Similarity=0.292  Sum_probs=127.1

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCccccc-CCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccchh
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSE-PVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINE   92 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~   92 (184)
                      .+..+|..+  .+.++.|++++|.+.. ..+..+. .+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.++.
T Consensus        29 ~l~~iP~~~--~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~  105 (361)
T 2xot_A           29 QLPNVPQSL--PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE  105 (361)
T ss_dssp             CCSSCCSSC--CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CcCccCccC--CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH
Confidence            455566544  3468999999999875 4455565 8999999999999999975 558999999999999999998864


Q ss_pred             -hhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcchhh----hcCCCCCEEeccCCCCCCCcHHHhhh
Q psy3785          93 -AVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPENI----GYMKSLTHIDASHNTISYVPWKLFSK  166 (184)
Q Consensus        93 -~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~~~----~~~~~L~~l~L~~n~l~~~~~~~~~~  166 (184)
                       .+..+++|+.|++++|.++.+ +..+.+++.|+.|++++|.++.+|...    ..+++|+.++|++|.|+.+|...+..
T Consensus       106 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  185 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK  185 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh
Confidence             567899999999999999977 567999999999999999999998764    56899999999999999999776666


Q ss_pred             hhc
Q psy3785         167 FHQ  169 (184)
Q Consensus       167 ~~~  169 (184)
                      ++.
T Consensus       186 l~~  188 (361)
T 2xot_A          186 LPA  188 (361)
T ss_dssp             SCH
T ss_pred             ccH
Confidence            554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.77  E-value=4.8e-18  Score=127.49  Aligned_cols=153  Identities=23%  Similarity=0.302  Sum_probs=130.0

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-hh
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EA   93 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~~   93 (184)
                      +..+|..+  .+.++.|++++|.+.. ..+..+..+++|++|++++|.+++++ ..+..+++|++|++++|.++.++ ..
T Consensus        19 l~~ip~~l--~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           19 FYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CSSCCSSS--CTTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccCCCC--CCCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            44455544  3579999999999875 34558889999999999999999975 46889999999999999999776 56


Q ss_pred             hcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCC--cchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785          94 VYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN  170 (184)
Q Consensus        94 ~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l  170 (184)
                      +..+++|++|++++|.++.++. .+..++.|+.+++++|.++.  +|..+..+++|+.+++++|.+++++...+..+..+
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence            7789999999999999998754 68899999999999999986  67889999999999999999999777666666655


Q ss_pred             c
Q psy3785         171 R  171 (184)
Q Consensus       171 ~  171 (184)
                      +
T Consensus       176 ~  176 (276)
T 2z62_A          176 P  176 (276)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.77  E-value=6.3e-18  Score=143.27  Aligned_cols=162  Identities=23%  Similarity=0.277  Sum_probs=123.5

Q ss_pred             ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccc-cchhhhc
Q psy3785          18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLE-MINEAVY   95 (184)
Q Consensus        18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~   95 (184)
                      .++..+..++.|+.|++++|.+.+ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.++ .+|..+.
T Consensus       457 ~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  535 (768)
T 3rgz_A          457 EIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG  535 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             cCCHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence            345556667777777777777766 567777788888888888888875 6777888888888888888877 6677777


Q ss_pred             CCCCceEEEccccccc-cchhhh---------------------------------------------------------
Q psy3785          96 DLPHLYKFNVSNNMIA-KISDNI---------------------------------------------------------  117 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~-~~~~~~---------------------------------------------------------  117 (184)
                      .+++|+.|++++|.++ .+|..+                                                         
T Consensus       536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  615 (768)
T 3rgz_A          536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI  615 (768)
T ss_dssp             GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred             CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence            8888888888888766 444322                                                         


Q ss_pred             -------------cCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC-CcHHHhhhhhccccccccccccc
Q psy3785         118 -------------GNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY-VPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       118 -------------~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                                   +.++.++.+++++|.++ .+|..++.++.|+.+++++|.+++ +|. .+..++.|+.+.++.|.+.
T Consensus       616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCE
T ss_pred             ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCccc
Confidence                         23456788899999888 778888999999999999999997 665 4466778888888877653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.77  E-value=1.4e-18  Score=132.12  Aligned_cols=160  Identities=18%  Similarity=0.181  Sum_probs=88.5

Q ss_pred             ccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCcccc--chhhh
Q psy3785          18 SLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEM--INEAV   94 (184)
Q Consensus        18 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~--~~~~~   94 (184)
                      .++..+..+++|+.|++++|.+........+..+++|++|++++|.+... +..+..+++|++|++++|.++.  +|..+
T Consensus        92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  171 (306)
T 2z66_A           92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  171 (306)
T ss_dssp             EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence            34444555566666666666554322223555566666666666666553 3445556666666666666553  45555


Q ss_pred             cCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhh-hccc
Q psy3785          95 YDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKF-HQNR  171 (184)
Q Consensus        95 ~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~-~~l~  171 (184)
                      ..+++|++|++++|.++.+ |..+..++.|+.+++++|.++.++. .+..+++|+.+++++|.+++.+...+... ..++
T Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  251 (306)
T 2z66_A          172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  251 (306)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred             hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence            5566666666666666654 4455666666666666666665543 34556666666666666666333222222 3455


Q ss_pred             cccccc
Q psy3785         172 SSRFGC  177 (184)
Q Consensus       172 ~~~~~~  177 (184)
                      .+.++.
T Consensus       252 ~L~L~~  257 (306)
T 2z66_A          252 FLNLTQ  257 (306)
T ss_dssp             EEECTT
T ss_pred             EEEccC
Confidence            444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=135.14  Aligned_cols=158  Identities=18%  Similarity=0.207  Sum_probs=117.4

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchh--hhcCCC
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINE--AVYDLP   98 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~l~   98 (184)
                      .+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++++|.. +..+++|++|++++|.++.+|.  .+..++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~  149 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT  149 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT
T ss_pred             HhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC
Confidence            56777788888888777664 4456677778888888888888877655 6777888888888888777765  455677


Q ss_pred             CceEEEcccc-ccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785          99 HLYKFNVSNN-MIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus        99 ~l~~L~l~~n-~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      +|++|++++| .++.+ +..+..++.|+.+++++|.++.+ |..+..+++|+.+++++|.++.+|...+...+.++.+.+
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  229 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL  229 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred             CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence            8888888877 46655 35677778888888888887755 566777788888888888887777777777777777777


Q ss_pred             ccccc
Q psy3785         176 GCALI  180 (184)
Q Consensus       176 ~~~~~  180 (184)
                      +.+.+
T Consensus       230 ~~n~l  234 (353)
T 2z80_A          230 RDTDL  234 (353)
T ss_dssp             ESCBC
T ss_pred             CCCcc
Confidence            66554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=3.8e-18  Score=127.57  Aligned_cols=149  Identities=21%  Similarity=0.286  Sum_probs=111.8

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY  101 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~  101 (184)
                      .+..++.|+.|++++|.+..  ++ .+..+++|+.|++++|.+++++. +..+++|+.|++++|+++.+|....  ++|+
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~  109 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLS  109 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred             chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence            45677888888888887763  34 57778888888888888888766 7788888888888888887764322  7788


Q ss_pred             EEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      .|++++|.++.++ .+..++.|+.+++++|.++.++ .+..+++|+.+++++|.++++  ..+..++.|+.+.++++.+
T Consensus       110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          110 RLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             EEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            8888888887764 4777888888888888888775 467788888888888888877  3445566676666665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.2e-18  Score=148.94  Aligned_cols=164  Identities=16%  Similarity=0.207  Sum_probs=124.8

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCC----------------CCccccc--CCCCccEEEecCCcccc-CchhhhCCC
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGE----------------SNMSQSE--PVLKLKVLNLQYNNLKG-LPDEIRHLT   75 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~----------------~~~~~~~--~l~~L~~L~l~~n~l~~-lp~~~~~l~   75 (184)
                      .+..+|..++.+++|+.|++++|.+.++                .+|+.++  .+++|+.|++++|.+.+ +|..+.+++
T Consensus       436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~  515 (876)
T 4ecn_A          436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP  515 (876)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred             cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence            4445777888888999999999887752                2788877  88889999998888665 788888888


Q ss_pred             CCCEEEcccCc-ccc--chhhhcC-------CCCceEEEccccccccchh--hhcCCCCCCEEEccCCCCCCcchhhhcC
Q psy3785          76 NLNELALNNNQ-LEM--INEAVYD-------LPHLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNNKIESLPENIGYM  143 (184)
Q Consensus        76 ~L~~L~l~~n~-l~~--~~~~~~~-------l~~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~l~~~~~~~  143 (184)
                      +|+.|++++|+ ++.  +|..+..       +++|+.|++++|.++.+|.  .++.++.|+.|++++|.++.+| .++.+
T Consensus       516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L  594 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN  594 (876)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred             CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence            88888888887 774  6654443       3488888888888887777  7888888888888888888777 67777


Q ss_pred             CCCCEEeccCCCCCCCcHHHhhhhhc-ccccccccccc
Q psy3785         144 KSLTHIDASHNTISYVPWKLFSKFHQ-NRSSRFGCALI  180 (184)
Q Consensus       144 ~~L~~l~L~~n~l~~~~~~~~~~~~~-l~~~~~~~~~~  180 (184)
                      ++|+.+++++|.++.+|..+.. ++. |+.+.++.+.+
T Consensus       595 ~~L~~L~Ls~N~l~~lp~~l~~-l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          595 VKLTDLKLDYNQIEEIPEDFCA-FTDQVEGLGFSHNKL  631 (876)
T ss_dssp             SEESEEECCSSCCSCCCTTSCE-ECTTCCEEECCSSCC
T ss_pred             CcceEEECcCCccccchHHHhh-ccccCCEEECcCCCC
Confidence            7888888888888877765433 334 66666665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.76  E-value=3.4e-19  Score=148.26  Aligned_cols=162  Identities=13%  Similarity=0.189  Sum_probs=115.2

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCC-----------------Cccccc--CCCCccEEEecCCcccc-CchhhhCC
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGES-----------------NMSQSE--PVLKLKVLNLQYNNLKG-LPDEIRHL   74 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~-lp~~~~~l   74 (184)
                      .+..+|..++.+++|+.|++++|.+.+ .                 +|+.++  ++++|++|++++|.+.+ +|..+.++
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCccCCHHHhcccCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            455577778888888888888888775 2                 788877  88888888888888776 68778888


Q ss_pred             CCCCEEEcccCc-ccc--chhhhcCC------CCceEEEccccccccchh--hhcCCCCCCEEEccCCCCC-Ccchhhhc
Q psy3785          75 TNLNELALNNNQ-LEM--INEAVYDL------PHLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNNKIE-SLPENIGY  142 (184)
Q Consensus        75 ~~L~~L~l~~n~-l~~--~~~~~~~l------~~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~-~l~~~~~~  142 (184)
                      ++|++|++++|+ ++.  +|..+..+      ++|+.|++++|.++.+|.  .++.++.|+.+++++|.++ .+| .++.
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~  351 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS  351 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence            888888888887 773  67666554      778888888888777776  7777888888888887777 666 5555


Q ss_pred             CCCCCEEeccCCCCCCCcHHHhhhhhc-cccccccccc
Q psy3785         143 MKSLTHIDASHNTISYVPWKLFSKFHQ-NRSSRFGCAL  179 (184)
Q Consensus       143 ~~~L~~l~L~~n~l~~~~~~~~~~~~~-l~~~~~~~~~  179 (184)
                      +++|+.+++++|.++.+|..+ ..+.. |+.+.++.+.
T Consensus       352 l~~L~~L~L~~N~l~~lp~~l-~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          352 EIKLASLNLAYNQITEIPANF-CGFTEQVENLSFAHNK  388 (636)
T ss_dssp             EEEESEEECCSSEEEECCTTS-EEECTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCccccccHhh-hhhcccCcEEEccCCc
Confidence            556666666666665555542 22333 5444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=7.1e-18  Score=134.92  Aligned_cols=158  Identities=20%  Similarity=0.243  Sum_probs=85.0

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchh-hhcCCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINE-AVYDLP   98 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~l~   98 (184)
                      ..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|. .+..++
T Consensus        93 ~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  171 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP  171 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             HHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence            445666677777777766654 3445666666777777777766666443 5566667777777666665543 333444


Q ss_pred             CceEEEcccc-ccccchh-hhcCCCCCCEEEccCCCCCCcc-----------------------hhhhcCCCCCEEeccC
Q psy3785          99 HLYKFNVSNN-MIAKISD-NIGNLTSLLVLNISNNKIESLP-----------------------ENIGYMKSLTHIDASH  153 (184)
Q Consensus        99 ~l~~L~l~~n-~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~-----------------------~~~~~~~~L~~l~L~~  153 (184)
                      +|+.|++++| .++.++. .+.+++.|+.+++++|.++.+|                       ..+..+++|+.+++++
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN  251 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred             cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence            5555555442 2333322 3444444555555444444443                       3344445555555555


Q ss_pred             CCCCCCcHHHhhhhhccccccccccc
Q psy3785         154 NTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       154 n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      |.++.++...+..++.|+.+.++.|.
T Consensus       252 n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          252 SQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcCceECHHHhcCCCCCCEEECCCCc
Confidence            55555444444444555555554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=9.6e-18  Score=134.16  Aligned_cols=156  Identities=22%  Similarity=0.270  Sum_probs=116.3

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch--------------------------hhhCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD--------------------------EIRHL   74 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~--------------------------~~~~l   74 (184)
                      ..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|.                          .+..+
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  195 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL  195 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             hhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence            456677788888888877663 334456667777777777777766543                          24445


Q ss_pred             CCCCEEEcccCccccchhhhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEecc
Q psy3785          75 TNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDAS  152 (184)
Q Consensus        75 ~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~  152 (184)
                      ++|+.|++++|.++.+|. +..+++|+.|++++|.++.+ |..+.+++.|+.+++++|.++.+ +..+..+++|+.++++
T Consensus       196 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          196 FNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             TTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence            566666666666665542 45667788888888888766 56788999999999999999966 4557889999999999


Q ss_pred             CCCCCCCcHHHhhhhhcccccccccc
Q psy3785         153 HNTISYVPWKLFSKFHQNRSSRFGCA  178 (184)
Q Consensus       153 ~n~l~~~~~~~~~~~~~l~~~~~~~~  178 (184)
                      +|.++.+|...+..++.++.+.++.|
T Consensus       275 ~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          275 HNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             SSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             CCcCCccChHHhccccCCCEEEccCC
Confidence            99999999888888888887776544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.76  E-value=4.6e-19  Score=147.41  Aligned_cols=160  Identities=18%  Similarity=0.259  Sum_probs=131.3

Q ss_pred             cccCCC--cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-ccc--CchhhhCC------CCCCEEEcccCcc
Q psy3785          19 LVGSAS--ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKG--LPDEIRHL------TNLNELALNNNQL   87 (184)
Q Consensus        19 ~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~--lp~~~~~l------~~L~~L~l~~n~l   87 (184)
                      +|..++  .+++|+.|++++|.+.+ .+|..++.+++|++|++++|. +++  +|..+..+      ++|+.|++++|.+
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            888888  99999999999999887 789999999999999999998 886  78888776      8999999999999


Q ss_pred             ccchh--hhcCCCCceEEEccccccc-cchhhhcCCCCCCEEEccCCCCCCcchhhhcCCC-CCEEeccCCCCCCCcHHH
Q psy3785          88 EMINE--AVYDLPHLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIESLPENIGYMKS-LTHIDASHNTISYVPWKL  163 (184)
Q Consensus        88 ~~~~~--~~~~l~~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~-L~~l~L~~n~l~~~~~~~  163 (184)
                      +.+|.  .+..+++|+.|++++|.++ .+| .++.++.|+.+++++|.++.+|..+..++. |+.+++++|.++.+|..+
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~  396 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF  396 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhh
Confidence            98887  8889999999999999988 777 777788888888888888888877777887 888888888888877643


Q ss_pred             hhh-hhcccccccccccc
Q psy3785         164 FSK-FHQNRSSRFGCALI  180 (184)
Q Consensus       164 ~~~-~~~l~~~~~~~~~~  180 (184)
                      ... +..++.+.++.+.+
T Consensus       397 ~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          397 DAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             CTTCSSCEEEEECCSSCT
T ss_pred             hhcccCccCEEECcCCcC
Confidence            221 22455555554433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=8.7e-18  Score=122.47  Aligned_cols=142  Identities=17%  Similarity=0.280  Sum_probs=120.3

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE-   92 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~-   92 (184)
                      .+..+|..+  .+.++.|++++|.+.....+..+..+++|+.|++++|.+++++. .+..+++|++|++++|.++.++. 
T Consensus        22 ~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~   99 (220)
T 2v70_A           22 KLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK   99 (220)
T ss_dssp             CCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred             CcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh
Confidence            344555544  34578999999998863334557889999999999999999754 68999999999999999998764 


Q ss_pred             hhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCC
Q psy3785          93 AVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        93 ~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      .+..+++|++|++++|.++.+ |..+..++.|+.+++++|.++.+ |..+..+++|+.+++++|++.+
T Consensus       100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            477899999999999999977 56788999999999999999987 5678889999999999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=7.1e-18  Score=134.49  Aligned_cols=137  Identities=24%  Similarity=0.337  Sum_probs=72.8

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-hhcCCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE-AVYDLP   98 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~   98 (184)
                      ..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|.++.++. .+..++
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  160 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP  160 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred             HHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence            445566666666666666553 334556666666666666666666543 35666666666666666665542 333455


Q ss_pred             CceEEEcccc-ccccchh-hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCC
Q psy3785          99 HLYKFNVSNN-MIAKISD-NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYV  159 (184)
Q Consensus        99 ~l~~L~l~~n-~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~  159 (184)
                      +|++|++++| .++.++. .+.+++.|+.|++++|.++.+|. +..+++|+.+++++|.++++
T Consensus       161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEE
T ss_pred             ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCcc
Confidence            5555555542 2333322 34444555555555554444432 33344444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=9.9e-18  Score=133.66  Aligned_cols=155  Identities=24%  Similarity=0.319  Sum_probs=104.0

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hh-------------------------hCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EI-------------------------RHL   74 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~-------------------------~~l   74 (184)
                      ..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+..++. .+                         ..+
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  184 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL  184 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             hhccCCccCCEEECCCCcCCe-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence            455667777788877777663 334456667777777777777665433 23                         444


Q ss_pred             CCCCEEEcccCccccchhhhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEecc
Q psy3785          75 TNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDAS  152 (184)
Q Consensus        75 ~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~  152 (184)
                      ++|+.|++++|.++.+|. +..+++|+.|++++|.++.+ +..+.+++.|+.+++++|.++.++ ..+..+++|+.++++
T Consensus       185 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (440)
T 3zyj_A          185 SNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA  263 (440)
T ss_dssp             SSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred             cccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence            555555555555555542 44556666677777766655 456777777788888888777554 446778888888888


Q ss_pred             CCCCCCCcHHHhhhhhccccccccc
Q psy3785         153 HNTISYVPWKLFSKFHQNRSSRFGC  177 (184)
Q Consensus       153 ~n~l~~~~~~~~~~~~~l~~~~~~~  177 (184)
                      +|.++.++...+..++.|+.+.++.
T Consensus       264 ~N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          264 HNNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             TSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCCCccChhHhccccCCCEEEcCC
Confidence            8888888887777777777666643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=1.9e-17  Score=118.59  Aligned_cols=137  Identities=18%  Similarity=0.211  Sum_probs=116.9

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCcccc-chhh
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEM-INEA   93 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~-~~~~   93 (184)
                      +..++ .+..+++|+.|++++|.+..   ++.+..+++|++|++++|.+++ .+..+..+++|++|++++|.++. .+..
T Consensus        56 i~~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~  131 (197)
T 4ezg_A           56 VTDLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK  131 (197)
T ss_dssp             CSCCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH
T ss_pred             ccChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH
Confidence            34444 57789999999999996543   4578889999999999999997 57778999999999999999995 5677


Q ss_pred             hcCCCCceEEEccccc-cccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785          94 VYDLPHLYKFNVSNNM-IAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        94 ~~~l~~l~~L~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      +..+++|++|++++|. ++.++ .+..++.|+.+++++|.++.++ .+..+++|+.+++++|++..
T Consensus       132 l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          132 INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            8899999999999998 88886 6889999999999999999887 67889999999999999865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.75  E-value=1.5e-17  Score=124.70  Aligned_cols=155  Identities=23%  Similarity=0.334  Sum_probs=135.1

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh-hcCCCCce
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLY  101 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~  101 (184)
                      ...++.++.++++++.+..   .+.+..+++|++|++++|.+.+++ .+..+++|++|++++|.++.++.. +..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            3568899999999998764   345788999999999999999875 688999999999999999987654 57899999


Q ss_pred             EEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785         102 KFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       102 ~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      +|++++|.++.+++ .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.+++++...+..++.|+.+.++.+.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            99999999998854 578999999999999999988765 6789999999999999999988888888999988888776


Q ss_pred             cc
Q psy3785         180 IM  181 (184)
Q Consensus       180 ~~  181 (184)
                      +.
T Consensus       193 l~  194 (272)
T 3rfs_A          193 LK  194 (272)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.5e-17  Score=121.16  Aligned_cols=147  Identities=18%  Similarity=0.244  Sum_probs=125.2

Q ss_pred             cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccc
Q psy3785          30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSN  107 (184)
Q Consensus        30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~  107 (184)
                      +.++.+++...  .+|..+.  +++++|++++|.++.++. .+..+++|+.|++++|.++.+ |..+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~--~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT--EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS--SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC--cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            46777777665  5666543  689999999999999765 688899999999999999977 67788999999999999


Q ss_pred             cccccchhh-hcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         108 NMIAKISDN-IGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       108 n~~~~~~~~-~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      |.++.+|.. +..++.|+.+++++|.++.++ ..+..+++|+.+++++|.+++++...+..++.++.+.++.|.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999988754 688999999999999999774 5688899999999999999999888888888888777765543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=2.1e-18  Score=147.49  Aligned_cols=160  Identities=19%  Similarity=0.226  Sum_probs=136.0

Q ss_pred             cccCCC--cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-ccc--CchhhhCCC-------CCCEEEcccCc
Q psy3785          19 LVGSAS--ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKG--LPDEIRHLT-------NLNELALNNNQ   86 (184)
Q Consensus        19 ~~~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~--lp~~~~~l~-------~L~~L~l~~n~   86 (184)
                      +|..++  .+++|+.|++++|.+.+ .+|..+..+++|+.|++++|. +++  +|..+..++       +|+.|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            788877  99999999999999887 789999999999999999998 886  787776665       99999999999


Q ss_pred             cccchh--hhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCC-CCEEeccCCCCCCCcHHH
Q psy3785          87 LEMINE--AVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKS-LTHIDASHNTISYVPWKL  163 (184)
Q Consensus        87 l~~~~~--~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~-L~~l~L~~n~l~~~~~~~  163 (184)
                      ++.+|.  .+..+++|+.|++++|.++.+| .++.++.|+.+++++|.++.+|..+..++. |+.+++++|.++.+|..+
T Consensus       560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~  638 (876)
T 4ecn_A          560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF  638 (876)
T ss_dssp             CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred             CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence            999988  8899999999999999999888 789999999999999999999988888888 999999999999888543


Q ss_pred             hhhh-hcccccccccccc
Q psy3785         164 FSKF-HQNRSSRFGCALI  180 (184)
Q Consensus       164 ~~~~-~~l~~~~~~~~~~  180 (184)
                      .... ..|+.+.++.+.+
T Consensus       639 ~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          639 NAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             CTTCSSCEEEEECCSSCT
T ss_pred             hccccCCCCEEECcCCcC
Confidence            2211 2255555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=6e-18  Score=129.28  Aligned_cols=151  Identities=16%  Similarity=0.165  Sum_probs=78.2

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCC-----CCccEEEecCCccccCc-hhhhCCCCCCEEEcccCcccc---chhhh
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPV-----LKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEM---INEAV   94 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~---~~~~~   94 (184)
                      ..+++|+.|++++|.+.+.  |..+..+     ++|++|++++|.+++++ ..+..+++|++|++++|++..   ++..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            5566666666666665542  4444444     55666666666665543 445556666666666665432   22232


Q ss_pred             --cCCCCceEEEccccccccch----hhhcCCCCCCEEEccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcHHHhhh
Q psy3785          95 --YDLPHLYKFNVSNNMIAKIS----DNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPWKLFSK  166 (184)
Q Consensus        95 --~~l~~l~~L~l~~n~~~~~~----~~~~~~~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~~~~~~  166 (184)
                        ..+++|++|++++|.++.++    ..+..++.|+.+++++|.++..+  ..+..+++|+.+++++|.++.+|..++  
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--
Confidence              44556666666666555322    12234555566666665555432  223334555555555555555554433  


Q ss_pred             hhccccccccccc
Q psy3785         167 FHQNRSSRFGCAL  179 (184)
Q Consensus       167 ~~~l~~~~~~~~~  179 (184)
                       +.++.+.++.|.
T Consensus       274 -~~L~~L~Ls~N~  285 (312)
T 1wwl_A          274 -AKLSVLDLSYNR  285 (312)
T ss_dssp             -SEEEEEECCSSC
T ss_pred             -CCceEEECCCCC
Confidence             444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.75  E-value=1.7e-17  Score=134.56  Aligned_cols=154  Identities=19%  Similarity=0.312  Sum_probs=130.0

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc---CchhhhCCCCCCEEEcccCcccc-chhh-hcCCC
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG---LPDEIRHLTNLNELALNNNQLEM-INEA-VYDLP   98 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L~~L~l~~n~l~~-~~~~-~~~l~   98 (184)
                      ..++.|+.|++++|.+.+ .+|..+..+++|++|++++|.+++   +|..+..+++|++|++++|.++. +|.. +..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCT-TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccCh-hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            578899999999999886 568888999999999999999996   45678899999999999999996 8764 56788


Q ss_pred             CceEEEccccccc-cchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785          99 HLYKFNVSNNMIA-KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC  177 (184)
Q Consensus        99 ~l~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~  177 (184)
                      +|+.|++++|.++ .+|..+.  +.|+.+++++|.++.+|..+..+++|+.+++++|.++.+|...+..++.++.+.++.
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence            9999999999986 3444443  689999999999999998888999999999999999999887777778888777765


Q ss_pred             ccc
Q psy3785         178 ALI  180 (184)
Q Consensus       178 ~~~  180 (184)
                      |.+
T Consensus       478 N~~  480 (520)
T 2z7x_B          478 NPW  480 (520)
T ss_dssp             SCB
T ss_pred             CCC
Confidence            544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.75  E-value=6.8e-18  Score=139.22  Aligned_cols=161  Identities=20%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCcccc--chh
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEM--INE   92 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~--~~~   92 (184)
                      +..++..+..+++|+.|++++|.+.+......+..+++|++|++++|.+.+ .|..+..+++|++|++++|.++.  +|.
T Consensus       388 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  467 (606)
T 3vq2_A          388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN  467 (606)
T ss_dssp             EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence            344556666777777777777776652222566677777777777777776 35566777777777777777764  456


Q ss_pred             hhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785          93 AVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN  170 (184)
Q Consensus        93 ~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l  170 (184)
                      .+..+++|+.|++++|.++.+ |..+..++.|+.+++++|.++.+ |..+..+++|+.+++++|.++.+|..+......+
T Consensus       468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L  547 (606)
T 3vq2_A          468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL  547 (606)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTC
T ss_pred             hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccC
Confidence            666677777777777777755 45567777777777777777755 5556777777777777777777766533322345


Q ss_pred             cccccc
Q psy3785         171 RSSRFG  176 (184)
Q Consensus       171 ~~~~~~  176 (184)
                      +.+.++
T Consensus       548 ~~l~l~  553 (606)
T 3vq2_A          548 AFFNLT  553 (606)
T ss_dssp             CEEECC
T ss_pred             cEEEcc
Confidence            555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=3.2e-18  Score=130.81  Aligned_cols=150  Identities=20%  Similarity=0.187  Sum_probs=127.8

Q ss_pred             ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc---Cchhh--hCCCCCCEEEcccCccccc---hhh-hcCC
Q psy3785          27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG---LPDEI--RHLTNLNELALNNNQLEMI---NEA-VYDL   97 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---lp~~~--~~l~~L~~L~l~~n~l~~~---~~~-~~~l   97 (184)
                      ++|++|++++|.+.. ..+..+..+++|++|++++|.+.+   +|..+  ..+++|++|++++|.++.+   +.. +..+
T Consensus       149 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR  227 (312)
T ss_dssp             TTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence            899999999999876 556889999999999999999775   34455  7899999999999999944   333 3478


Q ss_pred             CCceEEEccccccccch--hhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785          98 PHLYKFNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus        98 ~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      ++|+.|++++|.++..+  ..+..++.|+.+++++|.++.+|..+.  ++|+.+++++|.++++|.  +..++.++.+.+
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L  303 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSL  303 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEEC
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh--HhhCCCCCEEec
Confidence            99999999999998654  456678999999999999999988666  889999999999999976  678899999999


Q ss_pred             cccccc
Q psy3785         176 GCALIM  181 (184)
Q Consensus       176 ~~~~~~  181 (184)
                      +.|.+.
T Consensus       304 ~~N~l~  309 (312)
T 1wwl_A          304 KGNPFL  309 (312)
T ss_dssp             TTCTTT
T ss_pred             cCCCCC
Confidence            888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.75  E-value=2.3e-18  Score=130.99  Aligned_cols=138  Identities=22%  Similarity=0.279  Sum_probs=99.3

Q ss_pred             CcccccCCCCccEEEecCCccccCch--hhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEcccccccc--chhhhc
Q psy3785          44 NMSQSEPVLKLKVLNLQYNNLKGLPD--EIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAK--ISDNIG  118 (184)
Q Consensus        44 ~~~~~~~l~~L~~L~l~~n~l~~lp~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~--~~~~~~  118 (184)
                      +|..+..+++|++|++++|.+++++.  .+..+++|++|++++|.++.. +..+..+++|++|++++|.++.  +|..+.
T Consensus        93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  172 (306)
T 2z66_A           93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  172 (306)
T ss_dssp             EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence            34445566667777777776666543  466677777777777777644 3445567778888888887764  466777


Q ss_pred             CCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785         119 NLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       119 ~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      .++.|+.+++++|.++.+ |..+..+++|+.+++++|.+++++...+..++.|+.+.++.+.+.
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence            888888888888888866 456777888888888888888877666677778887777766553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=2.6e-17  Score=126.43  Aligned_cols=155  Identities=19%  Similarity=0.249  Sum_probs=76.9

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCc
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHL  100 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l  100 (184)
                      .+..+++|+.|++++|.+.. ..|..+..+++|++|++++|.++.+|..+.  ++|++|++++|.++.++ ..+..+++|
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L  147 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM  147 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             hhccCCCCCEEECCCCcCCe-eCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccc
Confidence            34555666666666665553 335555556666666666665555544332  34555555555544433 234445555


Q ss_pred             eEEEcccccccc---chhhhcCCCCCCEEEccCCC---------------------CCCc-chhhhcCCCCCEEeccCCC
Q psy3785         101 YKFNVSNNMIAK---ISDNIGNLTSLLVLNISNNK---------------------IESL-PENIGYMKSLTHIDASHNT  155 (184)
Q Consensus       101 ~~L~l~~n~~~~---~~~~~~~~~~L~~l~l~~n~---------------------l~~l-~~~~~~~~~L~~l~L~~n~  155 (184)
                      +.|++++|.++.   .+..+..++.|+.+++++|.                     ++.+ +..+..+++|+.+++++|.
T Consensus       148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  227 (330)
T 1xku_A          148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS  227 (330)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred             cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            555555555431   12334444444444444443                     3332 2334455555555555555


Q ss_pred             CCCCcHHHhhhhhccccccccccc
Q psy3785         156 ISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       156 l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      +++++...+..++.++.+.++.+.
T Consensus       228 l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          228 ISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             CCEECTTTGGGSTTCCEEECCSSC
T ss_pred             CceeChhhccCCCCCCEEECCCCc
Confidence            555444444445555555554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=6.3e-18  Score=124.40  Aligned_cols=149  Identities=19%  Similarity=0.199  Sum_probs=124.6

Q ss_pred             cccccc-CCCcCccccEEEeec-CCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCC---EEEcccC-cccc
Q psy3785          16 LVSLVG-SASASALLYTYEISS-DTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLN---ELALNNN-QLEM   89 (184)
Q Consensus        16 ~~~~~~-~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~---~L~l~~n-~l~~   89 (184)
                      +..++. .+..+++|+.|++++ |.+.. ..+..+..+++|++|++++|.++++|. +..+++++   +|++++| .++.
T Consensus        68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~  145 (239)
T 2xwt_C           68 LQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS  145 (239)
T ss_dssp             CCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred             cceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh
Confidence            445554 567899999999998 77764 445678889999999999999999987 88888888   9999999 9998


Q ss_pred             chh-hhcCCCCce-EEEccccccccchhhhcCCCCCCEEEccCCC-CCCcch-hhhcC-CCCCEEeccCCCCCCCcHHHh
Q psy3785          90 INE-AVYDLPHLY-KFNVSNNMIAKISDNIGNLTSLLVLNISNNK-IESLPE-NIGYM-KSLTHIDASHNTISYVPWKLF  164 (184)
Q Consensus        90 ~~~-~~~~l~~l~-~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~-l~~l~~-~~~~~-~~L~~l~L~~n~l~~~~~~~~  164 (184)
                      +|. .+..+++++ .+++++|.++.+|......+.|+.+++++|. ++.++. .+..+ ++|+.+++++|.++.+|...+
T Consensus       146 i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~  225 (239)
T 2xwt_C          146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL  225 (239)
T ss_dssp             ECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred             cCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence            875 467899999 9999999999887654444899999999995 998865 46778 899999999999999987644


Q ss_pred             hh
Q psy3785         165 SK  166 (184)
Q Consensus       165 ~~  166 (184)
                      ..
T Consensus       226 ~~  227 (239)
T 2xwt_C          226 EH  227 (239)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=6.8e-17  Score=116.45  Aligned_cols=143  Identities=23%  Similarity=0.304  Sum_probs=120.8

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA   93 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~   93 (184)
                      .+..++..+  .+.++.|++++|.+.. ..+..+..+++|++|++++|.++++|.. +..+++|++|++++|.++.++..
T Consensus        18 ~l~~~p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   94 (208)
T 2o6s_A           18 GRTSVPTGI--PAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG   94 (208)
T ss_dssp             CCSSCCSCC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CccCCCCCC--CCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence            344455444  5689999999999874 4455678899999999999999998655 68899999999999999988754


Q ss_pred             -hcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC-Cc
Q psy3785          94 -VYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY-VP  160 (184)
Q Consensus        94 -~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~-~~  160 (184)
                       +..+++|++|++++|.++.++. .+..++.|+.+++++|.++.++.. +..+++|+.+++++|++.+ .|
T Consensus        95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence             5689999999999999998865 478899999999999999988765 6789999999999999887 44

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=1.2e-17  Score=114.33  Aligned_cols=127  Identities=18%  Similarity=0.281  Sum_probs=97.2

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCcccc-chhhhcCCCCceEE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEM-INEAVYDLPHLYKF  103 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~l~~L  103 (184)
                      ..++++.+++++|.+....+|..+..+++|++|++++|.++++ ..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            4577888888888877446777778888888888888888877 567778888888888888886 66665567788888


Q ss_pred             Eccccccccch--hhhcCCCCCCEEEccCCCCCCcch----hhhcCCCCCEEecc
Q psy3785         104 NVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHIDAS  152 (184)
Q Consensus       104 ~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~----~~~~~~~L~~l~L~  152 (184)
                      ++++|.++.++  ..+..++.|+.+++++|.++.++.    .+..+++|+.++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888887654  567778888888888888776654    46777788887765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=1.7e-17  Score=127.57  Aligned_cols=140  Identities=20%  Similarity=0.297  Sum_probs=97.3

Q ss_pred             CCcCccccEEEeecCCCCC-CCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccc-hhhhcCCCCc
Q psy3785          23 ASASALLYTYEISSDTGSG-ESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHL  100 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l  100 (184)
                      +..++.|+.+++++|.+.. ...+..+..+++|++|++++|.++.+|..+.  ++|++|++++|.++.+ +..+..+++|
T Consensus       141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L  218 (330)
T 1xku_A          141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL  218 (330)
T ss_dssp             HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence            3456666666666666542 1334556666777777777777776665443  5677777777777755 4566677788


Q ss_pred             eEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHh
Q psy3785         101 YKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLF  164 (184)
Q Consensus       101 ~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~  164 (184)
                      +.|++++|.++.++ ..+..++.|+.+++++|.++.+|..+..++.|+.+++++|.+++++...+
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            88888888877664 35777778888888888888777777777888888888888887766554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.74  E-value=7.8e-18  Score=128.49  Aligned_cols=152  Identities=18%  Similarity=0.170  Sum_probs=89.9

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc---Cc--hhhhCCCCCCEEEcccCccccchhh----hc
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG---LP--DEIRHLTNLNELALNNNQLEMINEA----VY   95 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---lp--~~~~~l~~L~~L~l~~n~l~~~~~~----~~   95 (184)
                      .+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.+   ++  ..+..+++|++|++++|.++.++..    +.
T Consensus       143 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            35566666666666543 334555666666666666666543   21  1224556666666666666544431    23


Q ss_pred             CCCCceEEEccccccccc-hhhhcCC---CCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccc
Q psy3785          96 DLPHLYKFNVSNNMIAKI-SDNIGNL---TSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR  171 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~-~~~~~~~---~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~  171 (184)
                      .+++|++|++++|.++.. |+.+..+   +.|+.+++++|.++.+|..+.  ++|+.+++++|.++++|.  +..++.++
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~  297 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVD  297 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCS
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch--hhhCCCcc
Confidence            456666677777666654 5444444   467777777777766665443  567777777777776544  34556666


Q ss_pred             cccccccccc
Q psy3785         172 SSRFGCALIM  181 (184)
Q Consensus       172 ~~~~~~~~~~  181 (184)
                      .+.++.|.+.
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            6666666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.74  E-value=1.6e-17  Score=133.52  Aligned_cols=146  Identities=21%  Similarity=0.289  Sum_probs=65.5

Q ss_pred             cccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEc
Q psy3785          28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNV  105 (184)
Q Consensus        28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l  105 (184)
                      .++.|++++|.+.. ..+..+..+++|++|++++|.++++ |..+.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus        33 ~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            44555555554443 2233444445555555555544443 33444444555555555544444422 234444555555


Q ss_pred             cccccccc-hhhhcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccc
Q psy3785         106 SNNMIAKI-SDNIGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSR  174 (184)
Q Consensus       106 ~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~  174 (184)
                      ++|.++.+ +..+..+++|+.+++++|.++.++ ..+..+++|+.+++++|.++.++...+..++.|+.+.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR  182 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence            54444433 233444444444444444444332 2334444444444444444444444443334443333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.74  E-value=2.7e-17  Score=132.16  Aligned_cols=158  Identities=20%  Similarity=0.267  Sum_probs=139.3

Q ss_pred             ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccc-hhhhcCC
Q psy3785          20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI-NEAVYDL   97 (184)
Q Consensus        20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~l   97 (184)
                      +..+..+++|+.|++++|.+.. ..|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.++.+ +..+..+
T Consensus        49 ~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  127 (477)
T 2id5_A           49 QDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL  127 (477)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             HhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence            4578899999999999998875 5588899999999999999999998765 78899999999999999966 4667789


Q ss_pred             CCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785          98 PHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus        98 ~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      ++|+.|++++|.++.+ +..+..++.|+.+++++|.++.++. .+..+++|+.+++++|.+..++...+..+..|+.+.+
T Consensus       128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred             ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence            9999999999999876 5678999999999999999998875 4788999999999999999987777778888888877


Q ss_pred             ccc
Q psy3785         176 GCA  178 (184)
Q Consensus       176 ~~~  178 (184)
                      +.+
T Consensus       208 ~~~  210 (477)
T 2id5_A          208 SHW  210 (477)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.73  E-value=4.5e-17  Score=129.94  Aligned_cols=127  Identities=27%  Similarity=0.415  Sum_probs=78.8

Q ss_pred             ccEEEecCCcccc-CchhhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccC
Q psy3785          54 LKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISN  130 (184)
Q Consensus        54 L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~  130 (184)
                      |+.+++++|.+.+ .|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+ +..+..++.|+.+++++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            4444444444443 234455666677777777766654 34555666777777777776655 44566677777777777


Q ss_pred             CCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         131 NKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       131 n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      |.++.+ |..+..+++|+.+++++|.++++|...+..++.|+.+.++.|.+
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            777655 44566677777777777777776666666666666666654433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=2.4e-17  Score=135.90  Aligned_cols=152  Identities=20%  Similarity=0.238  Sum_probs=108.2

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccc-hhh
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEA   93 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~-~~~   93 (184)
                      +..+|..+  .+.++.|++++|.+.+ ..+..+..+++|+.|++++|.++++ |..|.++++|++|++++|.++.+ |..
T Consensus        23 l~~ip~~~--~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           23 LSKVPDDI--PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             CSSCCTTS--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred             cccCCCCC--CCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence            44555544  2677888888877764 4455677778888888888877775 45577778888888888877766 566


Q ss_pred             hcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCC--CcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785          94 VYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIE--SLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN  170 (184)
Q Consensus        94 ~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~--~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l  170 (184)
                      +..+++|++|++++|.++.++ ..+++++.|+.+++++|.++  ++|..++.+++|+.+++++|.+++++...+..+..+
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            777778888888888777664 56777788888888888777  457777777888888888888777554444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=6.7e-17  Score=133.48  Aligned_cols=83  Identities=25%  Similarity=0.268  Sum_probs=51.6

Q ss_pred             CCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785          97 LPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus        97 l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      +++|+.|++++|.++.+ |..++.++.|+.|++++|.++.+|..+..+++|+.+++++|.++.+|..+ ..++.|+.+.+
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L  331 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYL  331 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEEC
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEEC
Confidence            34455555555555533 44566666677777777766666655566777777777777777776654 44566666666


Q ss_pred             ccccc
Q psy3785         176 GCALI  180 (184)
Q Consensus       176 ~~~~~  180 (184)
                      +.+.+
T Consensus       332 ~~N~l  336 (597)
T 3oja_B          332 DHNSI  336 (597)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            55543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.73  E-value=9e-17  Score=126.10  Aligned_cols=82  Identities=26%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             CCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785          98 PHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG  176 (184)
Q Consensus        98 ~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~  176 (184)
                      ++|+.|++++|.++.+ |..+..++.|+.+++++|.++.++.....+++|+.+++++|.++.+|..+ ..++.|+.+.++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~  326 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLD  326 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECC
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcCCEEECC
Confidence            4455555555555433 44556666666666666666666555556677777777777777766543 345566666665


Q ss_pred             cccc
Q psy3785         177 CALI  180 (184)
Q Consensus       177 ~~~~  180 (184)
                      .+.+
T Consensus       327 ~N~i  330 (390)
T 3o6n_A          327 HNSI  330 (390)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            5543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=8.5e-17  Score=121.90  Aligned_cols=150  Identities=19%  Similarity=0.216  Sum_probs=131.8

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK  102 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  102 (184)
                      .+.++.|+.+++++|.+..  + +.+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.++. +..+++|++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~--~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS--V-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS  116 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred             hhhcCcccEEEccCCCccc--C-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence            3568899999999998874  3 357889999999999999999876 8999999999999999998765 788999999


Q ss_pred             EEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785         103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       103 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      |++++|.++.+ +.+..++.|+.+++++|.++.+ ..+..+++|+.+++++|.+++++.  +..++.|+.+.++.+.+.
T Consensus       117 L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          117 LSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            99999999987 4588899999999999999988 568889999999999999999876  677888998888877653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=5.3e-17  Score=118.29  Aligned_cols=147  Identities=18%  Similarity=0.198  Sum_probs=123.9

Q ss_pred             cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-c-hhhhCCCCCCEEEcccCccccchh-hhcCCCCceEEEcc
Q psy3785          30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-P-DEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVS  106 (184)
Q Consensus        30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~  106 (184)
                      +.++++++.+.  .+|..+.  ..+++|++++|.++.+ + ..+..+++|+.|++++|.++.++. .+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~--~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN--KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc--cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            57888888876  5676543  4578999999999997 3 347899999999999999998864 67789999999999


Q ss_pred             ccccccch-hhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         107 NNMIAKIS-DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       107 ~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      +|.++.++ ..+..++.|+.|++++|.++.+ |..+..+++|+.+++++|.+++++...+..++.++.+.++.|.+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            99999875 4588999999999999999977 56688899999999999999998767777788888777765543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.73  E-value=6.7e-17  Score=126.85  Aligned_cols=107  Identities=21%  Similarity=0.284  Sum_probs=88.6

Q ss_pred             hhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEE
Q psy3785          71 IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHI  149 (184)
Q Consensus        71 ~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l  149 (184)
                      +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.++..+..++.|+.+++++|.++.+|..+..++.|+.+
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L  323 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL  323 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence            44556777888888877755 56778899999999999999988877888999999999999999999888889999999


Q ss_pred             eccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         150 DASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       150 ~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      ++++|.++.++   ...++.++.+.+..|.+
T Consensus       324 ~L~~N~i~~~~---~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          324 YLDHNSIVTLK---LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             ECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred             ECCCCccceeC---chhhccCCEEEcCCCCc
Confidence            99999999986   35566777776665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=7.7e-17  Score=133.25  Aligned_cols=150  Identities=21%  Similarity=0.247  Sum_probs=122.5

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY  101 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~  101 (184)
                      .+..+++|+.|++++|.+.+  +++ +..+++|+.|++++|.+.++| .+..+++|+.|++++|.++.++ .+..+++|+
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~  134 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE  134 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCS
T ss_pred             HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccC
Confidence            57788999999999998774  333 778899999999999988876 5788889999999999988764 466788999


Q ss_pred             EEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         102 KFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      .|++++|.++.+ ..+..++.|+.|++++|.++.++. +..++.|+.|+|++|.|++++.  +..++.|+.+.+.++.+
T Consensus       135 ~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          135 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCSEEE
T ss_pred             EEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH--HccCCCCCEEEccCCcC
Confidence            999999988877 568888999999999999887766 7888899999999999988753  56677777777766544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=8.3e-17  Score=132.72  Aligned_cols=158  Identities=20%  Similarity=0.196  Sum_probs=122.0

Q ss_pred             ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCcccc--ch--hhh
Q psy3785          20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEM--IN--EAV   94 (184)
Q Consensus        20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~--~~--~~~   94 (184)
                      +..+..+++|+.|++++|.+.+...+..+..+++|++|++++|.+... |..+..+++|++|++++|.++.  ++  ..+
T Consensus       393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  472 (606)
T 3t6q_A          393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL  472 (606)
T ss_dssp             TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred             HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence            445666777788888777776544444577788888888888888774 5567788888888888888774  22  446


Q ss_pred             cCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccc
Q psy3785          95 YDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS  172 (184)
Q Consensus        95 ~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~  172 (184)
                      ..+++|+.|++++|.++.+ |..+..++.|+.+++++|.++.. |..+..++.| .+++++|.+++++...+..++.++.
T Consensus       473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~  551 (606)
T 3t6q_A          473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT  551 (606)
T ss_dssp             GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred             ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence            6788899999999888866 56788889999999999998854 5668888889 9999999999987777777888887


Q ss_pred             cccccc
Q psy3785         173 SRFGCA  178 (184)
Q Consensus       173 ~~~~~~  178 (184)
                      +.++.|
T Consensus       552 L~l~~N  557 (606)
T 3t6q_A          552 INLRQN  557 (606)
T ss_dssp             EECTTC
T ss_pred             EeCCCC
Confidence            776544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.72  E-value=1.7e-17  Score=135.32  Aligned_cols=153  Identities=20%  Similarity=0.222  Sum_probs=112.6

Q ss_pred             cCccccEEEeecCCCCCCCC---cccccCCCCccEEEecCCccccCc---hhhhCCCCCCEEEcccCccccchhhhcCCC
Q psy3785          25 ASALLYTYEISSDTGSGESN---MSQSEPVLKLKVLNLQYNNLKGLP---DEIRHLTNLNELALNNNQLEMINEAVYDLP   98 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~   98 (184)
                      .+++|+.|++++|.+.+ .+   +..++.+++|+.|++++|.+++++   ..+..+++|++|++++|.++.+|..+..++
T Consensus       332 ~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  410 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVE-EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE  410 (549)
T ss_dssp             HCTTCCEEECCSSCCCH-HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred             cCccccEEEccCCcccc-ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccc
Confidence            57788888888887765 22   233566777888888888877764   346777788888888888777777666677


Q ss_pred             CceEEEccccccccchhhh------------------cCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCc
Q psy3785          99 HLYKFNVSNNMIAKISDNI------------------GNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP  160 (184)
Q Consensus        99 ~l~~L~l~~n~~~~~~~~~------------------~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~  160 (184)
                      +|++|++++|.++.++..+                  ..++.|+.+++++|.++.+|. ...++.|+.+++++|.+++++
T Consensus       411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~  489 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVP  489 (549)
T ss_dssp             TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCC
T ss_pred             cccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcC
Confidence            7777777777776544321                  267788888888888888876 456888999999999999977


Q ss_pred             HHHhhhhhccccccccccc
Q psy3785         161 WKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       161 ~~~~~~~~~l~~~~~~~~~  179 (184)
                      ...+..++.++.+.++.|.
T Consensus       490 ~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          490 DGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             TTGGGGCTTCCEEECCSSC
T ss_pred             HHHHhcCcccCEEEecCCC
Confidence            7777777888877776554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=1.4e-16  Score=133.11  Aligned_cols=155  Identities=23%  Similarity=0.315  Sum_probs=123.6

Q ss_pred             CCCcCccccEEEeecCCCCC-CCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccchh-------
Q psy3785          22 SASASALLYTYEISSDTGSG-ESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMINE-------   92 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~~-------   92 (184)
                      .+..++.|+.+++++|.... ...|..+..+++|+.|++++|.++++|. .+..+++|+.|++++|.++.++.       
T Consensus       449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  528 (680)
T 1ziw_A          449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP  528 (680)
T ss_dssp             TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred             hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc
Confidence            34445566666666665542 2567788889999999999999999764 47889999999999999886532       


Q ss_pred             --hhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhh-hh
Q psy3785          93 --AVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFS-KF  167 (184)
Q Consensus        93 --~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~-~~  167 (184)
                        .+..+++|+.|++++|.++.+|. .+.+++.|+.+++++|.++.+|.. +..++.|+.+++++|.+++++...+. .+
T Consensus       529 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  608 (680)
T 1ziw_A          529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF  608 (680)
T ss_dssp             CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred             chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc
Confidence              25678899999999999998875 588999999999999999988765 56789999999999999998887766 67


Q ss_pred             hcccccccc
Q psy3785         168 HQNRSSRFG  176 (184)
Q Consensus       168 ~~l~~~~~~  176 (184)
                      +.++.+.++
T Consensus       609 ~~L~~l~l~  617 (680)
T 1ziw_A          609 RNLTELDMR  617 (680)
T ss_dssp             TTCSEEECT
T ss_pred             cccCEEEcc
Confidence            777766554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.72  E-value=3.6e-17  Score=125.85  Aligned_cols=156  Identities=19%  Similarity=0.277  Sum_probs=77.3

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchh-hhcCCCCc
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-AVYDLPHL  100 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l  100 (184)
                      .+..+++|+.|++++|.+.. ..|..+..+++|++|++++|.++.+|..+.  ++|++|++++|.++.++. .+..+++|
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             HhhCCCCCcEEECCCCccCc-cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence            34455555555555555443 334445555555555555555555544332  455555555555554442 24455555


Q ss_pred             eEEEcccccccc--c-hhhhcCC--------------------CCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCC
Q psy3785         101 YKFNVSNNMIAK--I-SDNIGNL--------------------TSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTI  156 (184)
Q Consensus       101 ~~L~l~~n~~~~--~-~~~~~~~--------------------~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l  156 (184)
                      +.|++++|.++.  . +..+..+                    +.|+.+++++|.++.++ ..+..+++|+.+++++|.+
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l  229 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI  229 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred             CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            555555555532  1 2222222                    23344444444444333 2345555666666666666


Q ss_pred             CCCcHHHhhhhhcccccccccccc
Q psy3785         157 SYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       157 ~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      ++++...+..++.++.+.++.+.+
T Consensus       230 ~~~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          230 RMIENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             CCCCTTGGGGCTTCCEEECCSSCC
T ss_pred             CcCChhHhhCCCCCCEEECCCCcC
Confidence            665554555555666555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.72  E-value=1.5e-17  Score=128.96  Aligned_cols=164  Identities=16%  Similarity=0.200  Sum_probs=136.4

Q ss_pred             ccccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchh
Q psy3785          14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINE   92 (184)
Q Consensus        14 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~   92 (184)
                      ..+..+|..+  .+.++.|++++|.+.. ..+..+..+++|+.|++++|.++++ |..+..+++|++|++++|.++.+|.
T Consensus        41 ~~l~~iP~~~--~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  117 (353)
T 2z80_A           41 GSLNSIPSGL--TEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS  117 (353)
T ss_dssp             TTCSSCCTTC--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred             CCcccccccc--cccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence            3455566544  3589999999999874 3445788999999999999999996 5568999999999999999998876


Q ss_pred             h-hcCCCCceEEEccccccccchh--hhcCCCCCCEEEccCC-CCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhh
Q psy3785          93 A-VYDLPHLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNN-KIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKF  167 (184)
Q Consensus        93 ~-~~~l~~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n-~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~  167 (184)
                      . +..+++|++|++++|.++.+|.  .+..++.|+.+++++| .++.++ ..+..+++|+.+++++|.+++++...+..+
T Consensus       118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  197 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI  197 (353)
T ss_dssp             HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence            5 7789999999999999998876  6889999999999999 577664 567889999999999999999655566777


Q ss_pred             hcccccccccccc
Q psy3785         168 HQNRSSRFGCALI  180 (184)
Q Consensus       168 ~~l~~~~~~~~~~  180 (184)
                      +.++.+.++.+.+
T Consensus       198 ~~L~~L~l~~n~l  210 (353)
T 2z80_A          198 QNVSHLILHMKQH  210 (353)
T ss_dssp             SEEEEEEEECSCS
T ss_pred             ccCCeecCCCCcc
Confidence            8888888776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.72  E-value=1.1e-16  Score=131.21  Aligned_cols=153  Identities=18%  Similarity=0.272  Sum_probs=125.7

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc---hhhhCCCCCCEEEcccCcccc-chhh-hcCCC
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP---DEIRHLTNLNELALNNNQLEM-INEA-VYDLP   98 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~l~~n~l~~-~~~~-~~~l~   98 (184)
                      ..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+++++   ..+..+++|+.|++++|.++. +|.. +..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCT-TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCcccc-chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            578899999999999886 67888899999999999999999764   457889999999999999986 7754 55788


Q ss_pred             CceEEEcccccccc-chhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785          99 HLYKFNVSNNMIAK-ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC  177 (184)
Q Consensus        99 ~l~~L~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~  177 (184)
                      +|+.|++++|.++. +|..+.  +.|+.+++++|.++.+|..++.++.|+.+++++|.++.+|...+..++.++.+.++.
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD  506 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence            89999999998863 333332  688999999999998888877889999999999999998887677777887777665


Q ss_pred             cc
Q psy3785         178 AL  179 (184)
Q Consensus       178 ~~  179 (184)
                      |.
T Consensus       507 N~  508 (562)
T 3a79_B          507 NP  508 (562)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.72  E-value=1.8e-17  Score=135.09  Aligned_cols=158  Identities=17%  Similarity=0.177  Sum_probs=79.2

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccc--hhhhcCCC
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMI--NEAVYDLP   98 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~--~~~~~~l~   98 (184)
                      .++.+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++++.. +..+++|++|++++|.++.+  |..+..++
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  123 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT  123 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred             hhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence            34455555555555555443 2334455555555555555555554332 55555555555555555422  33344455


Q ss_pred             CceEEEccccc-cccch-hhhcCCCCCCEEEccCCCCCC-cchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785          99 HLYKFNVSNNM-IAKIS-DNIGNLTSLLVLNISNNKIES-LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus        99 ~l~~L~l~~n~-~~~~~-~~~~~~~~L~~l~l~~n~l~~-l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      +|++|++++|. ++.++ ..+.+++.|+.+++++|.++. .|..++.++.|+.++++.|.+..+|...+..++.++.+.+
T Consensus       124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL  203 (549)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred             CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence            55555555554 33443 244555555555555555552 3444444455555555555554444444445566666665


Q ss_pred             ccccc
Q psy3785         176 GCALI  180 (184)
Q Consensus       176 ~~~~~  180 (184)
                      +.+.+
T Consensus       204 ~~n~l  208 (549)
T 2z81_A          204 RDTNL  208 (549)
T ss_dssp             ESCBC
T ss_pred             cCCcc
Confidence            55443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=9.8e-17  Score=132.50  Aligned_cols=106  Identities=22%  Similarity=0.284  Sum_probs=87.7

Q ss_pred             hhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEE
Q psy3785          71 IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHI  149 (184)
Q Consensus        71 ~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l  149 (184)
                      +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+|..+..++.|+.|++++|.++.+|..+..+++|+.+
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL  329 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence            44566777777788877755 56788899999999999999998888888999999999999999999888899999999


Q ss_pred             eccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785         150 DASHNTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       150 ~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      ++++|.++.++.   ..++.|+.+.++.|.
T Consensus       330 ~L~~N~l~~~~~---~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          330 YLDHNSIVTLKL---STHHTLKNLTLSHND  356 (597)
T ss_dssp             ECCSSCCCCCCC---CTTCCCSEEECCSSC
T ss_pred             ECCCCCCCCcCh---hhcCCCCEEEeeCCC
Confidence            999999999863   455666666665443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.72  E-value=8.1e-17  Score=131.67  Aligned_cols=153  Identities=23%  Similarity=0.305  Sum_probs=126.6

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-h
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-E   92 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~   92 (184)
                      .+..+|..+  .+.++.|++++|.+.. ..+..+..+++|+.|++++|.+++++ ..+.++++|++|++++|.++.++ .
T Consensus        18 ~l~~ip~~l--~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (570)
T 2z63_A           18 NFYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (570)
T ss_dssp             CCSSCCSSS--CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CccccCCCc--cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence            355566544  4579999999999875 44667888999999999999999874 56888999999999999998775 6


Q ss_pred             hhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCC--cchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhc
Q psy3785          93 AVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIES--LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ  169 (184)
Q Consensus        93 ~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~  169 (184)
                      .+..+++|++|++++|.++.++. .+++++.|+.+++++|.++.  +|..++.+++|+.+++++|.+++++...+..+..
T Consensus        95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  174 (570)
T 2z63_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred             hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence            67789999999999999988764 68899999999999999885  6888899999999999999999876655555655


Q ss_pred             c
Q psy3785         170 N  170 (184)
Q Consensus       170 l  170 (184)
                      +
T Consensus       175 L  175 (570)
T 2z63_A          175 M  175 (570)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.8e-17  Score=126.44  Aligned_cols=159  Identities=14%  Similarity=0.130  Sum_probs=115.9

Q ss_pred             cccCC--CcCccccEEEeecCCCCCCCCc----ccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCcccc--
Q psy3785          19 LVGSA--SASALLYTYEISSDTGSGESNM----SQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEM--   89 (184)
Q Consensus        19 ~~~~~--~~~~~l~~l~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~--   89 (184)
                      .+..+  ..+++|+.|++++|.+.+ ..+    ..+..+++|++|++++|.+.+++ ..+..+++|++|++++|++..  
T Consensus       107 ~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  185 (310)
T 4glp_A          107 MPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER  185 (310)
T ss_dssp             CCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred             hhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch
Confidence            34444  677888888888888775 222    23346788888888888888764 567788888888888888653  


Q ss_pred             -chhh--hcCCCCceEEEccccccccchh----hhcCCCCCCEEEccCCCCCCc-chhhhcC---CCCCEEeccCCCCCC
Q psy3785          90 -INEA--VYDLPHLYKFNVSNNMIAKISD----NIGNLTSLLVLNISNNKIESL-PENIGYM---KSLTHIDASHNTISY  158 (184)
Q Consensus        90 -~~~~--~~~l~~l~~L~l~~n~~~~~~~----~~~~~~~L~~l~l~~n~l~~l-~~~~~~~---~~L~~l~L~~n~l~~  158 (184)
                       ++..  +..+++|++|++++|.++.++.    .++.++.|+.+++++|.++.. |..+..+   ++|+.+++++|.++.
T Consensus       186 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~  265 (310)
T 4glp_A          186 GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ  265 (310)
T ss_dssp             HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS
T ss_pred             hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc
Confidence             3322  2467888888888888876544    246778889999999988865 6655555   688899999999988


Q ss_pred             CcHHHhhhhhccccccccccccc
Q psy3785         159 VPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      +|..++   +.|+.+.++.|.+.
T Consensus       266 lp~~~~---~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          266 VPKGLP---AKLRVLDLSSNRLN  285 (310)
T ss_dssp             CCSCCC---SCCSCEECCSCCCC
T ss_pred             hhhhhc---CCCCEEECCCCcCC
Confidence            877554   67777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=1.1e-17  Score=140.97  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=105.5

Q ss_pred             CcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCC
Q psy3785          44 NMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSL  123 (184)
Q Consensus        44 ~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L  123 (184)
                      .+..+..++.|+.|++++|.+..+|..+..+++|++|+|++|.++.+|..+..+++|++|++++|.++.+|..++.++.|
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence            46678888999999999999999998888999999999999999999988889999999999999999999889999999


Q ss_pred             CEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC-CcHHH
Q psy3785         124 LVLNISNNKIESLPENIGYMKSLTHIDASHNTISY-VPWKL  163 (184)
Q Consensus       124 ~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~  163 (184)
                      +.|++++|.++.+|..++.+++|+.|+|++|.|++ +|..+
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            99999999999999889999999999999999998 44444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=3.7e-16  Score=120.61  Aligned_cols=148  Identities=27%  Similarity=0.337  Sum_probs=88.6

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFN  104 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~  104 (184)
                      .++.|+.+++++|.+..  ++. +..+++|++|++++|.+++++. +..+++|++|++++|.++.++ .+..+++|+.|+
T Consensus       197 ~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~  271 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLN  271 (347)
T ss_dssp             GCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred             CCCccceeecccCCCCC--Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEE
Confidence            34444444444444332  111 4555666666666666666544 566666666666666666553 345566677777


Q ss_pred             ccccccccchhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         105 VSNNMIAKISDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       105 l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      +++|.++.++ .+..++.|+.+++++|.++.. +..+..+++|+.+++++|.+++++.  +..++.++.+.++.+.+
T Consensus       272 l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          272 VGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             ccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            7777666553 356667777777777776644 3446667777777777777777544  45566666666665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.70  E-value=1.4e-16  Score=131.39  Aligned_cols=161  Identities=19%  Similarity=0.178  Sum_probs=118.5

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccc-hh
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NE   92 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~-~~   92 (184)
                      .+..+|..+.  +.++.|++++|.+.. ..|..+..+++|++|++++|.+.++ |..|.++++|++|++++|.++.+ |.
T Consensus        23 ~l~~iP~~l~--~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   99 (606)
T 3t6q_A           23 GLNEIPGTLP--NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET   99 (606)
T ss_dssp             CCSSCCTTSC--TTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred             CcccCcCCCC--CcCcEEEccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh
Confidence            3455665553  367888888888775 4467788888888888888888875 66688888888888888888755 56


Q ss_pred             hhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcc-hhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc
Q psy3785          93 AVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLP-ENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN  170 (184)
Q Consensus        93 ~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l  170 (184)
                      .+..+++|++|++++|.++.+ +..++.++.|+.+++++|.++.++ ..+..+++|+.+++++|.+++++...+..+..+
T Consensus       100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  179 (606)
T 3t6q_A          100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA  179 (606)
T ss_dssp             TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred             hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence            677788888888888888876 456778888888888888888652 233447888888888888888766666666666


Q ss_pred             c--ccccccc
Q psy3785         171 R--SSRFGCA  178 (184)
Q Consensus       171 ~--~~~~~~~  178 (184)
                      +  .+.++.+
T Consensus       180 ~~l~L~l~~n  189 (606)
T 3t6q_A          180 TNLSLNLNGN  189 (606)
T ss_dssp             CSEEEECTTC
T ss_pred             ceeEEecCCC
Confidence            6  4444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.70  E-value=2e-16  Score=132.11  Aligned_cols=162  Identities=16%  Similarity=0.211  Sum_probs=123.1

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchh-
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINE-   92 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~-   92 (184)
                      .+..+|..+.  ++++.|++++|.+.. ..+..+..+++|+.|++++|.++++ |..+.++++|++|++++|.++.+|. 
T Consensus        15 ~L~~ip~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~   91 (680)
T 1ziw_A           15 KLTQVPDDLP--TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK   91 (680)
T ss_dssp             CCSSCCSCSC--TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred             CccccccccC--CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence            3455665553  688888998888775 4455688888888899888888886 5667888888888888888888875 


Q ss_pred             hhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhh--hh
Q psy3785          93 AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSK--FH  168 (184)
Q Consensus        93 ~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~--~~  168 (184)
                      .+..+++|++|++++|.++.++ ..++++++|+.+++++|.++.. +..+..+++|+.+++++|.+++++...+..  ..
T Consensus        92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  171 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS  171 (680)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred             hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence            4777888888888888888775 5688888888888888888855 445677888888888888888866655443  35


Q ss_pred             ccccccccccc
Q psy3785         169 QNRSSRFGCAL  179 (184)
Q Consensus       169 ~l~~~~~~~~~  179 (184)
                      .++.+.++.+.
T Consensus       172 ~L~~L~L~~n~  182 (680)
T 1ziw_A          172 SLKKLELSSNQ  182 (680)
T ss_dssp             EESEEECTTCC
T ss_pred             cccEEECCCCc
Confidence            66666665553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.70  E-value=5.4e-16  Score=119.70  Aligned_cols=151  Identities=17%  Similarity=0.281  Sum_probs=104.5

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF  103 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L  103 (184)
                      ..+++|+.+++++|.+..  ++. +..+++|+.+++.+|.+.+++. +..+++|++|++++|.++.++. +..+++|++|
T Consensus       174 ~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  248 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWL  248 (347)
T ss_dssp             GGCTTCSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             ccCCCCCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE
Confidence            344455555555554442  222 4445555555555555555433 5667778888888887776655 6677888888


Q ss_pred             EccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785         104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      ++++|.++.+ +.+..++.|+.+++++|.++.++ .+..+++|+.+++++|.+++.+...+..++.++.+.++++.+.
T Consensus       249 ~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          249 EIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             ECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             ECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            8888887766 34777888888888888888774 4677888888888888888877677777888888887776553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=4.9e-16  Score=111.94  Aligned_cols=147  Identities=24%  Similarity=0.334  Sum_probs=122.6

Q ss_pred             cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh-hcCCCCceEEEccc
Q psy3785          30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVSN  107 (184)
Q Consensus        30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~~  107 (184)
                      +.++.+++...  .+|..+  .+++++|++++|.+++++.. +..+++|++|++++|.++.++.. +..+++|++|++++
T Consensus        10 ~~v~c~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT--SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc--CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            35555555544  455543  46899999999999998654 78899999999999999988754 56899999999999


Q ss_pred             cccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         108 NMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       108 n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      |.++.++. .+..++.|+.+++++|.++.++.. +..+++|+.+++++|.+++++...+..++.++.+.++.|.+
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            99998865 478999999999999999988765 68899999999999999999888888888888888876643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.70  E-value=9.5e-17  Score=109.82  Aligned_cols=124  Identities=22%  Similarity=0.206  Sum_probs=110.1

Q ss_pred             CCCccEEEecCCccc--cCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcccccccc-chhhhcCCCCCCEEE
Q psy3785          51 VLKLKVLNLQYNNLK--GLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK-ISDNIGNLTSLLVLN  127 (184)
Q Consensus        51 l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~-~~~~~~~~~~L~~l~  127 (184)
                      .++++.|++++|.++  .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. +|..+..++.|+.++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            478999999999999  5888889999999999999999987 667789999999999999997 777788899999999


Q ss_pred             ccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcH---HHhhhhhccccccc
Q psy3785         128 ISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPW---KLFSKFHQNRSSRF  175 (184)
Q Consensus       128 l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~---~~~~~~~~l~~~~~  175 (184)
                      +++|.++.++  ..+..+++|+.+++++|.+++++.   ..+..++.|+.+.+
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            9999999875  678999999999999999999776   57777778876654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=1.1e-16  Score=111.60  Aligned_cols=130  Identities=21%  Similarity=0.179  Sum_probs=114.7

Q ss_pred             CCCCccEEEecCCccc--cCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcccccccc-chhhhcCCCCCCEE
Q psy3785          50 PVLKLKVLNLQYNNLK--GLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK-ISDNIGNLTSLLVL  126 (184)
Q Consensus        50 ~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~-~~~~~~~~~~L~~l  126 (184)
                      ..++++.|++++|.++  .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. +|..+..++.|+.+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3478999999999999  6888888999999999999999987 667789999999999999997 67777789999999


Q ss_pred             EccCCCCCCcc--hhhhcCCCCCEEeccCCCCCCCcH---HHhhhhhcccccccccccc
Q psy3785         127 NISNNKIESLP--ENIGYMKSLTHIDASHNTISYVPW---KLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       127 ~l~~n~l~~l~--~~~~~~~~L~~l~L~~n~l~~~~~---~~~~~~~~l~~~~~~~~~~  180 (184)
                      ++++|.++.++  ..+..+++|+.+++++|.++.+|.   ..+..++.++.+.+..+.+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            99999999876  678899999999999999999876   5778888888888776544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.8e-16  Score=118.45  Aligned_cols=139  Identities=25%  Similarity=0.294  Sum_probs=119.8

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY   95 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~   95 (184)
                      +..++ .+..+++|+.|++++|.+.+  +++ +..+++|+.|++++|.++++|....  ++|+.|++++|.++.++ .+.
T Consensus        53 i~~l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~  125 (263)
T 1xeu_A           53 IQSLA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLI  125 (263)
T ss_dssp             CCCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGT
T ss_pred             cccch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhc
Confidence            34444 67789999999999999874  444 8899999999999999999865433  89999999999999875 477


Q ss_pred             CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHH
Q psy3785          96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL  163 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~  163 (184)
                      .+++|+.|++++|.++.++ .+..++.|+.+++++|.++.+ ..+..+++|+.+++++|.++..|...
T Consensus       126 ~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~~  191 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVKY  191 (263)
T ss_dssp             TCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred             CcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcccc
Confidence            8999999999999999886 688999999999999999987 56788999999999999998876543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.69  E-value=5.2e-17  Score=124.33  Aligned_cols=146  Identities=15%  Similarity=0.185  Sum_probs=111.4

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhh-hCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEI-RHLTNLNELALNNNQLEMINEAVYDLPHLYK  102 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~-~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  102 (184)
                      .++.|+.|++++|.+.. ..+..+..+++|++|++++|.++++ +..+ ..+++|++|++++|.++.++.. ..+++|+.
T Consensus       118 ~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~  195 (317)
T 3o53_A          118 RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKT  195 (317)
T ss_dssp             CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCE
T ss_pred             ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCE
Confidence            35678888888888775 4455777788899999999888875 4444 4678899999999988877543 34788899


Q ss_pred             EEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCC-CCcHHHhhhhhcccc
Q psy3785         103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS-YVPWKLFSKFHQNRS  172 (184)
Q Consensus       103 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~-~~~~~~~~~~~~l~~  172 (184)
                      |++++|.++.+|+.+..++.|+.+++++|.++.+|..+..+++|+.+++++|++. +.....+..++.++.
T Consensus       196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~  266 (317)
T 3o53_A          196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT  266 (317)
T ss_dssp             EECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred             EECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence            9999998888877788888899999999988888887888888999999999888 333333344444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.69  E-value=1.5e-16  Score=122.33  Aligned_cols=157  Identities=19%  Similarity=0.255  Sum_probs=121.3

Q ss_pred             ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCcccc--c-hhhhc
Q psy3785          20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEM--I-NEAVY   95 (184)
Q Consensus        20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~--~-~~~~~   95 (184)
                      +..+..+++|+.|++++|.+.  .+|..+.  ++|++|++++|.++.+|. .+..+++|++|++++|.++.  . +..+.
T Consensus        95 ~~~~~~l~~L~~L~L~~n~l~--~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  170 (332)
T 2ft3_A           95 EKAFSPLRKLQKLYISKNHLV--EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD  170 (332)
T ss_dssp             GGGSTTCTTCCEEECCSSCCC--SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred             HhHhhCcCCCCEEECCCCcCC--ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence            566788899999999998876  4555544  788888888888888754 47778888888888887752  1 22222


Q ss_pred             CC--------------------CCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccC
Q psy3785          96 DL--------------------PHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASH  153 (184)
Q Consensus        96 ~l--------------------~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~  153 (184)
                      .+                    ++++.|++++|.++.++ ..+..++.|+.+++++|.++.++. .+..+++|+.+++++
T Consensus       171 ~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  250 (332)
T 2ft3_A          171 GLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN  250 (332)
T ss_dssp             SCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             CCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence            22                    46777777777777664 568899999999999999997764 688899999999999


Q ss_pred             CCCCCCcHHHhhhhhccccccccccccc
Q psy3785         154 NTISYVPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       154 n~l~~~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      |.++.+|.. +..++.|+.+.++.|.+.
T Consensus       251 N~l~~lp~~-l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          251 NKLSRVPAG-LPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             SCCCBCCTT-GGGCTTCCEEECCSSCCC
T ss_pred             CcCeecChh-hhcCccCCEEECCCCCCC
Confidence            999999886 466788888888776653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.69  E-value=5.3e-17  Score=114.23  Aligned_cols=134  Identities=19%  Similarity=0.237  Sum_probs=111.8

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCC-CCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhh-cCCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPV-LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLP   98 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~   98 (184)
                      ..+.....|+.|++++|.+.  .++. +..+ ++|+.|++++|.++++ ..+..+++|++|++++|.++.+|..+ ..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            34556788999999999887  3444 4444 4899999999999987 56788899999999999999887544 6789


Q ss_pred             CceEEEccccccccchh--hhcCCCCCCEEEccCCCCCCcchh----hhcCCCCCEEeccCCCCCC
Q psy3785          99 HLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNNKIESLPEN----IGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        99 ~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~l~~~----~~~~~~L~~l~L~~n~l~~  158 (184)
                      +|++|++++|.++.+|.  .+..++.|+.+++++|.++.+|..    +..++.|+.++++.|.+..
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999999988876  788899999999999999888764    7889999999999988755

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=3.4e-16  Score=128.44  Aligned_cols=137  Identities=25%  Similarity=0.280  Sum_probs=72.4

Q ss_pred             CccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEc
Q psy3785          26 SALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNV  105 (184)
Q Consensus        26 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l  105 (184)
                      +++|+.|++++|.+.+  +|. +..  +|+.|++++|.++++|.   .+++|+.|++++|.++.+|.   .+++|+.|++
T Consensus        99 l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  167 (571)
T 3cvr_A           99 PASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSV  167 (571)
T ss_dssp             CTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred             cCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEEC
Confidence            3444555555544442  333 222  45555555555555444   34455555555555555444   3445666666


Q ss_pred             cccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCC-------CEEeccCCCCCCCcHHHhhhhhcccccccccc
Q psy3785         106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSL-------THIDASHNTISYVPWKLFSKFHQNRSSRFGCA  178 (184)
Q Consensus       106 ~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L-------~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~  178 (184)
                      ++|.++.+|. +.  +.|+.|++++|.++.+|. +..  +|       +.+++++|.|+.+|..++. ++.++.+.++.|
T Consensus       168 s~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N  240 (571)
T 3cvr_A          168 RNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDN  240 (571)
T ss_dssp             CSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSS
T ss_pred             CCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCC
Confidence            6666555554 33  556666666666665555 322  44       6666666666666665555 566666666555


Q ss_pred             cc
Q psy3785         179 LI  180 (184)
Q Consensus       179 ~~  180 (184)
                      .+
T Consensus       241 ~l  242 (571)
T 3cvr_A          241 PL  242 (571)
T ss_dssp             SC
T ss_pred             cC
Confidence            44

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.68  E-value=2.1e-16  Score=111.20  Aligned_cols=131  Identities=20%  Similarity=0.247  Sum_probs=112.9

Q ss_pred             cccCCCCccEEEecCCccccCchhhhCCC-CCCEEEcccCccccchhhhcCCCCceEEEccccccccchhh-hcCCCCCC
Q psy3785          47 QSEPVLKLKVLNLQYNNLKGLPDEIRHLT-NLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDN-IGNLTSLL  124 (184)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~-~~~~~~L~  124 (184)
                      .+.++++|++|++++|.++.+|. +..+. +|+.|++++|.++.+ ..+..+++|++|++++|.++.+|+. +..++.|+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            45668899999999999999865 45554 999999999999987 5677899999999999999988754 48999999


Q ss_pred             EEEccCCCCCCcch--hhhcCCCCCEEeccCCCCCCCcHH---Hhhhhhccccccccccc
Q psy3785         125 VLNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVPWK---LFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       125 ~l~l~~n~l~~l~~--~~~~~~~L~~l~L~~n~l~~~~~~---~~~~~~~l~~~~~~~~~  179 (184)
                      .+++++|.++.+|.  .+..+++|+.+++++|+++.+|..   ++..++.++.+....+.
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999999998887  688999999999999999998875   67778888887776554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=8.1e-16  Score=109.85  Aligned_cols=125  Identities=20%  Similarity=0.294  Sum_probs=105.9

Q ss_pred             cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEcccc
Q psy3785          30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNN  108 (184)
Q Consensus        30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n  108 (184)
                      +.++.+++.+.  .+|..+  .+++++|++++|.++.+|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~--~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK--VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS--SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC--cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46777777765  566654  36899999999999999988999999999999999999876 45778999999999999


Q ss_pred             ccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC
Q psy3785         109 MIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       109 ~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~  158 (184)
                      .++.++ ..+..++.|+.+++++|.++.++.. +..+++|+.+++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            999875 4688999999999999999988764 7778999999999999876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=6e-16  Score=110.37  Aligned_cols=125  Identities=24%  Similarity=0.291  Sum_probs=102.4

Q ss_pred             cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh--hhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEcc
Q psy3785          30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE--IRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVS  106 (184)
Q Consensus        30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~--~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~  106 (184)
                      +.++++++.+.  .+|..+..  ++++|++++|.+++++..  +..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~--~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK--EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS--SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC--cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            67888888775  56665443  889999999999887643  78889999999999998876 5677788999999999


Q ss_pred             ccccccch-hhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCC
Q psy3785         107 NNMIAKIS-DNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       107 ~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      +|.++.++ ..+.+++.|+.+++++|.++.+ |..+..+++|+.+++++|++++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99988775 4578889999999999999865 5667888899999999999887

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.67  E-value=6.4e-16  Score=123.27  Aligned_cols=134  Identities=23%  Similarity=0.269  Sum_probs=120.6

Q ss_pred             CccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccc-hhhhcCCCCceEE
Q psy3785          26 SALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKF  103 (184)
Q Consensus        26 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L  103 (184)
                      .+.|+.+++++|.+.+ ..|..+..+++|++|++++|.++++ |..+..+++|++|++++|.++.+ |..+..+++|++|
T Consensus       274 ~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             TSCCCEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             ccCceEEEecCccccc-cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            3689999999999886 6688899999999999999999986 66789999999999999999977 5667789999999


Q ss_pred             Eccccccccc-hhhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC-Cc
Q psy3785         104 NVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY-VP  160 (184)
Q Consensus       104 ~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~-~~  160 (184)
                      ++++|.++.+ |..+.+++.|+.+++++|.++.+|.. +..+++|+.+++++|++++ +|
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999977 67899999999999999999988764 5789999999999999999 66

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=8.5e-17  Score=131.55  Aligned_cols=151  Identities=21%  Similarity=0.270  Sum_probs=79.3

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc--hhhhCCCCCCEEEcccCcccc-chhhhcCCCCce
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP--DEIRHLTNLNELALNNNQLEM-INEAVYDLPHLY  101 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~l~  101 (184)
                      .+++|+.+++++|.+.  .++..+..+++|++|++++|.+.+.+  ..+..+++|++|++++|.++. .|..+..+++|+
T Consensus       371 ~~~~L~~L~l~~n~l~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  448 (570)
T 2z63_A          371 GTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  448 (570)
T ss_dssp             TCSCCCEEECCSCSEE--EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             ccCccCEEECCCCccc--cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence            3444444444444433  12223445555555555555555432  234555555555555555553 234444555666


Q ss_pred             EEEccccccc--cchhhhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785         102 KFNVSNNMIA--KISDNIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC  177 (184)
Q Consensus       102 ~L~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~  177 (184)
                      .|++++|.++  .+|..+..++.|+.+++++|.++.+ |..+..+++|+.+++++|.+++++...+..++.++.+.++.
T Consensus       449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence            6666666554  3455555566666666666666544 44455556666666666666665555555555555554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.67  E-value=2.8e-16  Score=127.46  Aligned_cols=138  Identities=18%  Similarity=0.223  Sum_probs=121.5

Q ss_pred             cccCCCcCccccEEEeecCCCCCC-CCcccccCCCCccEEEecCCcccc-Cchh-hhCCCCCCEEEcccCccc-cchhhh
Q psy3785          19 LVGSASASALLYTYEISSDTGSGE-SNMSQSEPVLKLKVLNLQYNNLKG-LPDE-IRHLTNLNELALNNNQLE-MINEAV   94 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~-lp~~-~~~l~~L~~L~l~~n~l~-~~~~~~   94 (184)
                      ++..+..+++|+.|++++|.+.+- .+|..+..+++|++|++++|.+++ +|.. +..+++|+.|++++|.++ .+|..+
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  419 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL  419 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence            567788999999999999998741 345678899999999999999998 8865 778899999999999987 444443


Q ss_pred             cCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC
Q psy3785          95 YDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        95 ~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~  158 (184)
                      .  ++|+.|++++|+++.+|..+..++.|+.+++++|.++.+|.. +..+++|+.+++++|++++
T Consensus       420 ~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          420 P--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             C--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             c--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            2  689999999999999998888999999999999999999876 7889999999999999998

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=6.2e-16  Score=127.87  Aligned_cols=150  Identities=19%  Similarity=0.216  Sum_probs=131.9

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK  102 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  102 (184)
                      ...++.|+.|++++|.+..  ++ .+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.+| .+..+++|+.
T Consensus        39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred             hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence            4578899999999999774  33 68889999999999999999876 889999999999999999876 5778999999


Q ss_pred             EEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785         103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       103 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      |++++|.++.++ .+..++.|+.|++++|.++.+ ..+..+++|+.|+|++|.+++++.  +..++.|+.+.++++.+.
T Consensus       114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          114 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            999999999874 588999999999999999988 568899999999999999999766  677889998888877653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.66  E-value=1.1e-15  Score=118.93  Aligned_cols=148  Identities=26%  Similarity=0.308  Sum_probs=124.1

Q ss_pred             cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hh-CCCCCCEEEcccCccccch-hhhcCCCCceEEEcc
Q psy3785          30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IR-HLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVS  106 (184)
Q Consensus        30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~-~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~  106 (184)
                      +.++.+++...  .+|..+.  ..++.|++++|.+++++.. +. .+++|+.|++++|.++.++ ..+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~--~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP--NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS--SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC--ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            57888888766  5666543  4589999999999997655 55 8999999999999999886 557789999999999


Q ss_pred             ccccccchh-hhcCCCCCCEEEccCCCCCCc-chhhhcCCCCCEEeccCCCCCCCcHHHh---hhhhccccccccccccc
Q psy3785         107 NNMIAKISD-NIGNLTSLLVLNISNNKIESL-PENIGYMKSLTHIDASHNTISYVPWKLF---SKFHQNRSSRFGCALIM  181 (184)
Q Consensus       107 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~L~~n~l~~~~~~~~---~~~~~l~~~~~~~~~~~  181 (184)
                      +|.++.++. .+..++.|+.|++++|.++.+ +..+..+++|+.|+|++|.|+.+|...+   ..++.|+.+.++.|.+.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999998854 688999999999999999977 4568889999999999999999998887   45788888888777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=2.1e-16  Score=127.66  Aligned_cols=130  Identities=15%  Similarity=0.190  Sum_probs=83.2

Q ss_pred             CccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhh-CCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785          26 SALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIR-HLTNLNELALNNNQLEMINEAVYDLPHLYKF  103 (184)
Q Consensus        26 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L  103 (184)
                      ++.|+.|++++|.+.+ ..|..+..+++|+.|++++|.++++ |..+. .+++|++|++++|.++.+|.. ..+++|+.|
T Consensus       119 l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L  196 (487)
T 3oja_A          119 GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTL  196 (487)
T ss_dssp             CSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEE
Confidence            4455666666666554 3455556666677777777766663 44443 566677777777766655432 246667777


Q ss_pred             EccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCC
Q psy3785         104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS  157 (184)
Q Consensus       104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~  157 (184)
                      ++++|.++.+|+.+..++.|+.+++++|.++.+|..+..++.|+.+++++|++.
T Consensus       197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             ECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            777777766665566667777777777777766666666667777777777766

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=1.9e-15  Score=129.37  Aligned_cols=161  Identities=21%  Similarity=0.224  Sum_probs=123.9

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccc-cC-chhhhCCCCCCEEEcccCccccc-h
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLK-GL-PDEIRHLTNLNELALNNNQLEMI-N   91 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l-p~~~~~l~~L~~L~l~~n~l~~~-~   91 (184)
                      .+..+|.   -.+.++.|++++|.+.. ..+..+..+++|+.|++++|... .+ |..+.++++|++|++++|.++.+ |
T Consensus        15 ~L~~vP~---lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           15 NLTQVPQ---VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CSSCCCS---SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCC---CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            4555665   45789999999998875 55788888999999999999544 46 67788899999999999998866 6


Q ss_pred             hhhcCCCCceEEEcccccccc-chhh--hcCCCCCCEEEccCCCCCCc--chhhhcCCCCCEEeccCCCCCCCcHHHhhh
Q psy3785          92 EAVYDLPHLYKFNVSNNMIAK-ISDN--IGNLTSLLVLNISNNKIESL--PENIGYMKSLTHIDASHNTISYVPWKLFSK  166 (184)
Q Consensus        92 ~~~~~l~~l~~L~l~~n~~~~-~~~~--~~~~~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~  166 (184)
                      ..+..+++|++|++++|.++. ++..  +++++.|+.|++++|.++.+  +..++.+++|+.+++++|.++++....+..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            778889999999999998874 4443  88899999999999998855  346888999999999999998843333333


Q ss_pred             h--hccccccccccc
Q psy3785         167 F--HQNRSSRFGCAL  179 (184)
Q Consensus       167 ~--~~l~~~~~~~~~  179 (184)
                      +  ..++.+.++.+.
T Consensus       171 l~~~~L~~L~L~~n~  185 (844)
T 3j0a_A          171 LQGKTLSFFSLAANS  185 (844)
T ss_dssp             HHHCSSCCCEECCSB
T ss_pred             ccCCccceEECCCCc
Confidence            3  556655555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=2.8e-15  Score=120.26  Aligned_cols=143  Identities=25%  Similarity=0.326  Sum_probs=70.5

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFN  104 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~  104 (184)
                      .+++|+.|++++|.+.+  +++ +..+++|++|++++|.+++++. +..+++|+.|++++|.++.++. +..+++|+.|+
T Consensus       241 ~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~  315 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLT  315 (466)
T ss_dssp             GCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEE
T ss_pred             cCCCCCEEECCCCcccc--chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEE
Confidence            34444444444444432  111 4444555555555555554433 4445555555555555554433 34455555555


Q ss_pred             ccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785         105 VSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG  176 (184)
Q Consensus       105 l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~  176 (184)
                      +++|.++.+++ +..++.|+.+++++|.++.++ .+..+++|+.+++++|.+++.+.  +..++.++.+.++
T Consensus       316 L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  383 (466)
T 1o6v_A          316 LYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN  383 (466)
T ss_dssp             CCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred             CcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence            55555554433 445555555555555555442 34555566666666666655433  3444445444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=1.8e-16  Score=133.59  Aligned_cols=119  Identities=26%  Similarity=0.269  Sum_probs=104.0

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY   95 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~   95 (184)
                      +...+..+..++.|+.|++++|.+.  .+|..+..+++|+.|++++|.++.+|..+..+++|++|+|++|.++.+|..+.
T Consensus       213 ~~~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~  290 (727)
T 4b8c_D          213 MVMPKDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG  290 (727)
T ss_dssp             ---------CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred             eecChhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence            3345666788999999999999987  67888889999999999999999999999999999999999999999999899


Q ss_pred             CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCc
Q psy3785          96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESL  136 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l  136 (184)
                      .+.+|++|++++|.++.+|..++.++.|+.|++++|.++..
T Consensus       291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            99999999999999999998899999999999999999844

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.64  E-value=9.9e-17  Score=122.79  Aligned_cols=153  Identities=20%  Similarity=0.239  Sum_probs=90.1

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh----------
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA----------   93 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~----------   93 (184)
                      ...++|+.|++++|.+.. ..|..+..+++|+.|++++|.+++++. +..+++|++|++++|.++.++..          
T Consensus        31 ~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~  108 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN  108 (317)
T ss_dssp             TTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred             ccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence            345677888888777765 445667777778888888887776543 66777777777777776654421          


Q ss_pred             -------hcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcc-hhh-hcCCCCCEEeccCCCCCCCcHHH
Q psy3785          94 -------VYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLP-ENI-GYMKSLTHIDASHNTISYVPWKL  163 (184)
Q Consensus        94 -------~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~-~~~-~~~~~L~~l~L~~n~l~~~~~~~  163 (184)
                             ...+++|++|++++|.++.++ ..+..++.|+.+++++|.++.++ ..+ ..++.|+.+++++|.++.++...
T Consensus       109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  188 (317)
T 3o53_A          109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV  188 (317)
T ss_dssp             SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred             CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc
Confidence                   012344555555555555443 24555566666666666666442 222 34566666666666666553322


Q ss_pred             hhhhhcccccccccccc
Q psy3785         164 FSKFHQNRSSRFGCALI  180 (184)
Q Consensus       164 ~~~~~~l~~~~~~~~~~  180 (184)
                        .++.++.+.++.+.+
T Consensus       189 --~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          189 --VFAKLKTLDLSSNKL  203 (317)
T ss_dssp             --CCTTCCEEECCSSCC
T ss_pred             --ccccCCEEECCCCcC
Confidence              245555555554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.64  E-value=5.2e-15  Score=118.75  Aligned_cols=149  Identities=23%  Similarity=0.267  Sum_probs=72.1

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK  102 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  102 (184)
                      +..+++|+.|++++|.+.+ . ++ ++.+++|+.|++++|.+.+++ .+..+++|+.|++++|.++.++. +..+++|+.
T Consensus       195 l~~l~~L~~L~l~~n~l~~-~-~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  269 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISD-I-TP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTE  269 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCC-C-GG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             hccCCCCCEEEecCCcccc-c-cc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCE
Confidence            4455666666666665543 1 11 344555555555555555442 24444555555555555444332 334444444


Q ss_pred             EEccccccccchh---------------------hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcH
Q psy3785         103 FNVSNNMIAKISD---------------------NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW  161 (184)
Q Consensus       103 L~l~~n~~~~~~~---------------------~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~  161 (184)
                      |++++|.++.++.                     .+..++.|+.+++++|.++.++. +..+++|+.+++++|.+++++ 
T Consensus       270 L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-  347 (466)
T 1o6v_A          270 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-  347 (466)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-
T ss_pred             EECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-
Confidence            4444444444333                     14444555555555555554433 344555555555555555542 


Q ss_pred             HHhhhhhccccccccccc
Q psy3785         162 KLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~  179 (184)
                       .+..++.++.+.++++.
T Consensus       348 -~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          348 -SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             -GGTTCTTCCEEECCSSC
T ss_pred             -hhccCCCCCEEeCCCCc
Confidence             23344555555554443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.64  E-value=1.1e-15  Score=125.31  Aligned_cols=140  Identities=21%  Similarity=0.270  Sum_probs=121.4

Q ss_pred             cccCCCcCccccEEEeecCCCCCC-CCcccccCCCCccEEEecCCcccc-Cchh-hhCCCCCCEEEcccCcccc-chhhh
Q psy3785          19 LVGSASASALLYTYEISSDTGSGE-SNMSQSEPVLKLKVLNLQYNNLKG-LPDE-IRHLTNLNELALNNNQLEM-INEAV   94 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~-lp~~-~~~l~~L~~L~l~~n~l~~-~~~~~   94 (184)
                      ++..+..+++|+.|++++|.+... .+|..+..+++|++|++++|.+++ +|.. +..+++|+.|++++|.++. +|..+
T Consensus       369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  448 (562)
T 3a79_B          369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL  448 (562)
T ss_dssp             TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred             hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence            567788999999999999998752 235678899999999999999998 8765 7788999999999999873 33332


Q ss_pred             cCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCC-Cc
Q psy3785          95 YDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISY-VP  160 (184)
Q Consensus        95 ~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~-~~  160 (184)
                      .  ++|+.|++++|+++.+|..+..++.|+.+++++|.++.+|.. +..++.|+.+++++|++.+ .+
T Consensus       449 ~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          449 P--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             C--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             c--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            2  689999999999999998888999999999999999999987 8889999999999999998 44

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.64  E-value=3.1e-15  Score=119.99  Aligned_cols=127  Identities=25%  Similarity=0.264  Sum_probs=67.0

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCce
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY  101 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~  101 (184)
                      .+..+++|+.|++++|.+.+  ++  ++.+++|++|++++|.+++++  +..+++|++|++++|.++.+|  +..+++|+
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~  130 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLT  130 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred             hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCC
Confidence            45556666666666666553  22  455666666666666666654  555666666666666666553  44556666


Q ss_pred             EEEccccccccchhhhcCCCCCCEEEccCC-CCCCcchhhhcCCCCCEEeccCCCCCCCc
Q psy3785         102 KFNVSNNMIAKISDNIGNLTSLLVLNISNN-KIESLPENIGYMKSLTHIDASHNTISYVP  160 (184)
Q Consensus       102 ~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n-~l~~l~~~~~~~~~L~~l~L~~n~l~~~~  160 (184)
                      +|++++|.++.++  ++.++.|+.+++++| .+..+  .++.++.|+.+++++|.++++|
T Consensus       131 ~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          131 YLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             EEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC
T ss_pred             EEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec
Confidence            6666666655442  334444444444444 12222  1333444455555555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=5.2e-16  Score=125.38  Aligned_cols=152  Identities=20%  Similarity=0.235  Sum_probs=90.6

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh-----------
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA-----------   93 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-----------   93 (184)
                      ..++|+.|++++|.+.. ..|..+..+++|+.|++++|.+++.++ +..+++|++|++++|.++.+|..           
T Consensus        32 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N  109 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (487)
T ss_dssp             TGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             cCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence            45578888888887765 445677777888888888888776543 67777777777777777655421           


Q ss_pred             ------hcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCc-chhhh-cCCCCCEEeccCCCCCCCcHHHh
Q psy3785          94 ------VYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESL-PENIG-YMKSLTHIDASHNTISYVPWKLF  164 (184)
Q Consensus        94 ------~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~-~~~~L~~l~L~~n~l~~~~~~~~  164 (184)
                            ...+++|+.|++++|.++.+ |..++.++.|+.|++++|.++.+ |..+. .++.|+.+++++|.+++++... 
T Consensus       110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-  188 (487)
T 3oja_A          110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-  188 (487)
T ss_dssp             CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-
T ss_pred             cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-
Confidence                  01234555555555555544 33455556666666666666543 33332 4566666666666666543322 


Q ss_pred             hhhhcccccccccccc
Q psy3785         165 SKFHQNRSSRFGCALI  180 (184)
Q Consensus       165 ~~~~~l~~~~~~~~~~  180 (184)
                       .++.|+.+.++.|.+
T Consensus       189 -~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          189 -VFAKLKTLDLSSNKL  203 (487)
T ss_dssp             -CCTTCCEEECCSSCC
T ss_pred             -cCCCCCEEECCCCCC
Confidence             245555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.63  E-value=2.2e-15  Score=123.68  Aligned_cols=142  Identities=31%  Similarity=0.335  Sum_probs=103.0

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY   95 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~   95 (184)
                      +..++..+  .++|+.|++++|.+.  .+|   ..+++|+.|++++|.++++|. +.+  +|+.|++++|.++.+|.   
T Consensus        71 L~~lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---  137 (571)
T 3cvr_A           71 LSSLPDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---  137 (571)
T ss_dssp             CSCCCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---
T ss_pred             CCccCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---
Confidence            34455444  367888888888776  455   346788888888888888776 544  78888888888887766   


Q ss_pred             CCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcc-----
Q psy3785          96 DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN-----  170 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l-----  170 (184)
                      .+++|+.|++++|.++.+|.   .++.|+.|++++|.++.+|. +.  ++|+.+++++|.|+.+|. +..   .+     
T Consensus       138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~---~L~~~~~  207 (571)
T 3cvr_A          138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV---RNHHSEE  207 (571)
T ss_dssp             CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-----------
T ss_pred             cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH---hhhcccc
Confidence            56788888888888887766   56788888888888888777 44  788888888888888777 332   44     


Q ss_pred             --cccccccccc
Q psy3785         171 --RSSRFGCALI  180 (184)
Q Consensus       171 --~~~~~~~~~~  180 (184)
                        +.+.++.|.+
T Consensus       208 ~L~~L~Ls~N~l  219 (571)
T 3cvr_A          208 TEIFFRCRENRI  219 (571)
T ss_dssp             CCEEEECCSSCC
T ss_pred             cceEEecCCCcc
Confidence              6666665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.2e-15  Score=107.62  Aligned_cols=124  Identities=29%  Similarity=0.420  Sum_probs=109.8

Q ss_pred             ccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCC
Q psy3785          54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNK  132 (184)
Q Consensus        54 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~  132 (184)
                      -+.++++++.++.+|..+.  +.++.|++++|.++.+|..+..+++|+.|++++|.++.++ ..+.+++.|+.|++++|.
T Consensus        12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            3678999999999987653  5899999999999999988889999999999999999885 568999999999999999


Q ss_pred             CCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785         133 IESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       133 l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      ++.++. .+..+++|+.+++++|.|+.+|...+..++.++.+.++.|.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            998865 58889999999999999999999888888888877776543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.62  E-value=1.4e-15  Score=125.44  Aligned_cols=138  Identities=20%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccc-c-chhhhcCCC
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLE-M-INEAVYDLP   98 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~-~-~~~~~~~l~   98 (184)
                      .+..++.|+.+++..++......+..+..+..++.++++.|.+..+ +..+..++.++.|++++|.+. . .|..+..++
T Consensus       415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence            3344455555555444433322333344444555555555554443 223344445555555554322 1 233344444


Q ss_pred             CceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCC
Q psy3785          99 HLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYV  159 (184)
Q Consensus        99 ~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~  159 (184)
                      +|+.|++++|+++.+ |..+.+++.|+.|++++|+++.++. .+..+++|+.+++++|.|+++
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  557 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  557 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence            555555555554443 2344445555555555555544432 244445555555555555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=1.5e-14  Score=101.62  Aligned_cols=129  Identities=22%  Similarity=0.271  Sum_probs=106.8

Q ss_pred             ccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchh-hhCCCCCCEEEcccCccccchhh-hcCCCCceEEEcc
Q psy3785          29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDE-IRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVS  106 (184)
Q Consensus        29 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~  106 (184)
                      .+.++.+++...  .+|..+  .++++.|++++|.++++|.. +..+++|++|++++|.++.++.. +..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS--SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc--cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            357777777765  455443  36899999999999997654 68899999999999999988754 5689999999999


Q ss_pred             ccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcH
Q psy3785         107 NNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPW  161 (184)
Q Consensus       107 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~  161 (184)
                      +|.++.++. .+..++.|+.+++++|.++.+|.. +..+++|+.+++++|++.+...
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999998865 478899999999999999988765 5778999999999999998443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=2.8e-15  Score=123.12  Aligned_cols=119  Identities=21%  Similarity=0.263  Sum_probs=103.1

Q ss_pred             CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCC
Q psy3785          53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNK  132 (184)
Q Consensus        53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~  132 (184)
                      .|+.|++++|.++++|. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+| .++.++.|+.|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            57889999999999987 88999999999999999999988889999999999999999887 78999999999999999


Q ss_pred             CCCc--chhhhcCCCCCEEeccCCCCCCCcHH---Hhhhhhccccc
Q psy3785         133 IESL--PENIGYMKSLTHIDASHNTISYVPWK---LFSKFHQNRSS  173 (184)
Q Consensus       133 l~~l--~~~~~~~~~L~~l~L~~n~l~~~~~~---~~~~~~~l~~~  173 (184)
                      ++.+  |..++.+++|+.+++++|+++++|..   +...++.|+.+
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            9977  78899999999999999999986543   34445666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.61  E-value=1.1e-14  Score=116.73  Aligned_cols=61  Identities=25%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCcccc
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEM   89 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~   89 (184)
                      ++.+++|+.|++++|.+.+.  +  ++.+++|++|++++|.++++|  +..+++|++|++++|.++.
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC
T ss_pred             cccCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce
Confidence            45555666666666655531  1  445555555555555555543  4445555555555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=3.4e-16  Score=120.26  Aligned_cols=155  Identities=14%  Similarity=0.162  Sum_probs=85.1

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccC-ccc--cchhhhcC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNN-QLE--MINEAVYD   96 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n-~l~--~~~~~~~~   96 (184)
                      ..+..+++|+.|++++|.+.+..++..+..+++|++|++++|.+++ .+..+..+++|++|++++| .++  .++..+..
T Consensus        87 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~  166 (336)
T 2ast_B           87 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  166 (336)
T ss_dssp             CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence            3344566666666666665442255555666666666666666654 4455555666666666666 455  24444445


Q ss_pred             CCCceEEEcccc-cccc--chhhhcCCC-CCCEEEccCC--CCC--CcchhhhcCCCCCEEeccCCC-CCC-CcHHHhhh
Q psy3785          97 LPHLYKFNVSNN-MIAK--ISDNIGNLT-SLLVLNISNN--KIE--SLPENIGYMKSLTHIDASHNT-ISY-VPWKLFSK  166 (184)
Q Consensus        97 l~~l~~L~l~~n-~~~~--~~~~~~~~~-~L~~l~l~~n--~l~--~l~~~~~~~~~L~~l~L~~n~-l~~-~~~~~~~~  166 (184)
                      +++|++|++++| .++.  ++..+..++ .|+.+++++|  .++  .++..+..+++|+.+++++|. ++. .+. .+..
T Consensus       167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~  245 (336)
T 2ast_B          167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQ  245 (336)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGG
T ss_pred             CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhC
Confidence            666666666666 5552  344455555 6666666666  232  344445555666666666665 443 222 2233


Q ss_pred             hhcccccccc
Q psy3785         167 FHQNRSSRFG  176 (184)
Q Consensus       167 ~~~l~~~~~~  176 (184)
                      ++.|+.+.++
T Consensus       246 l~~L~~L~l~  255 (336)
T 2ast_B          246 LNYLQHLSLS  255 (336)
T ss_dssp             CTTCCEEECT
T ss_pred             CCCCCEeeCC
Confidence            3555544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=4.5e-15  Score=121.95  Aligned_cols=120  Identities=22%  Similarity=0.279  Sum_probs=108.2

Q ss_pred             cccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccc
Q psy3785          28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSN  107 (184)
Q Consensus        28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~  107 (184)
                      .|+.|++++|.+..  +|. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+| .+..+++|+.|++++
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            58899999999874  566 89999999999999999999999999999999999999999998 788999999999999


Q ss_pred             cccccc--hhhhcCCCCCCEEEccCCCCCCcchh----hhcCCCCCEEec
Q psy3785         108 NMIAKI--SDNIGNLTSLLVLNISNNKIESLPEN----IGYMKSLTHIDA  151 (184)
Q Consensus       108 n~~~~~--~~~~~~~~~L~~l~l~~n~l~~l~~~----~~~~~~L~~l~L  151 (184)
                      |.++.+  |..++.++.|+.+++++|.++.+|+.    ...+++|+.+++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999977  88899999999999999999976543    445889998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=2.4e-18  Score=123.32  Aligned_cols=113  Identities=27%  Similarity=0.295  Sum_probs=79.4

Q ss_pred             CcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCC
Q psy3785          44 NMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSL  123 (184)
Q Consensus        44 ~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L  123 (184)
                      +|..+..+++|++|++++|.++++| .+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+| .+..++.|
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L  117 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNL  117 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred             hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence            3346667777777777777777776 666777777777777777776655555667777777777777665 46666777


Q ss_pred             CEEEccCCCCCCcch--hhhcCCCCCEEeccCCCCCC
Q psy3785         124 LVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       124 ~~l~l~~n~l~~l~~--~~~~~~~L~~l~L~~n~l~~  158 (184)
                      +.+++++|.++.++.  .+..+++|+.+++++|++++
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            777777777776553  46667777777777777755

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=2.4e-15  Score=107.23  Aligned_cols=125  Identities=23%  Similarity=0.321  Sum_probs=107.6

Q ss_pred             ccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh--hcCCCCceEEEccccccccc-hhhhcCCCCCCEEEccC
Q psy3785          54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA--VYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISN  130 (184)
Q Consensus        54 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~--~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~  130 (184)
                      -+.++++++.++.+|..+..  +++.|++++|.++.++..  +..+++|++|++++|.++.+ |..+.+++.|+.+++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            37899999999999986644  899999999999988753  77899999999999999977 67899999999999999


Q ss_pred             CCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         131 NKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       131 n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      |.++.++.. +..+++|+.+++++|.+++++...+..++.++.+.++.|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            999977654 78899999999999999997666777778888777766543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.59  E-value=5.2e-15  Score=126.60  Aligned_cols=140  Identities=22%  Similarity=0.260  Sum_probs=115.5

Q ss_pred             cccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCcccc-chhh--h
Q psy3785          19 LVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEM-INEA--V   94 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~-~~~~--~   94 (184)
                      .+..++.+++|+.|++++|.......|..+.++++|+.|++++|.++++ |..+.++++|++|++++|.++. +|..  +
T Consensus        40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence            3577889999999999999766544478899999999999999999986 7789999999999999999884 4544  7


Q ss_pred             cCCCCceEEEccccccccc--hhhhcCCCCCCEEEccCCCCCCc-chhhhcC--CCCCEEeccCCCCCC
Q psy3785          95 YDLPHLYKFNVSNNMIAKI--SDNIGNLTSLLVLNISNNKIESL-PENIGYM--KSLTHIDASHNTISY  158 (184)
Q Consensus        95 ~~l~~l~~L~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~--~~L~~l~L~~n~l~~  158 (184)
                      ..+++|++|++++|.++.+  +..++++++|+.|++++|.++.+ +..+..+  ++|+.+++++|.+.+
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence            7899999999999999865  35789999999999999998854 4445444  677777777777766

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.59  E-value=1.2e-14  Score=116.54  Aligned_cols=123  Identities=28%  Similarity=0.394  Sum_probs=58.3

Q ss_pred             ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCC-------
Q psy3785          27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPH-------   99 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~-------   99 (184)
                      ++|+.|++++|.+.+  +| .++.+++|++|++++|.++++|..+   .+|++|++++|.++.+| .+..+++       
T Consensus       131 ~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence            355555555555442  33 3455555555555555555444321   24444444444444443 2334444       


Q ss_pred             -------------ceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCc
Q psy3785         100 -------------LYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP  160 (184)
Q Consensus       100 -------------l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~  160 (184)
                                   +++|++++|.++.+|. ++.++.|+.+++++|.++.+|..   .++|+.+++++|.++++|
T Consensus       204 ~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~  273 (454)
T 1jl5_A          204 NNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLP  273 (454)
T ss_dssp             SSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccC
Confidence                         4444444444444442 44555555555555555544431   234445555555444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.58  E-value=4.8e-16  Score=121.87  Aligned_cols=43  Identities=19%  Similarity=0.065  Sum_probs=23.1

Q ss_pred             CCcCccccEEEeecCCCCCC---CCcccccCCCCccEEEecCCccc
Q psy3785          23 ASASALLYTYEISSDTGSGE---SNMSQSEPVLKLKVLNLQYNNLK   65 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~   65 (184)
                      +..+++|+.|++++|.+...   .++..+..+++|+.|++++|.++
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            34556666666666665542   13444455555555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=1.9e-15  Score=116.01  Aligned_cols=158  Identities=16%  Similarity=0.138  Sum_probs=102.2

Q ss_pred             cccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCC-cccc--CchhhhCCCCCCEEEcccC-cccc--chh
Q psy3785          19 LVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYN-NLKG--LPDEIRHLTNLNELALNNN-QLEM--INE   92 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~l~~n-~l~~--~~~   92 (184)
                      ++..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++| .+++  ++..+..+++|++|++++| .++.  ++.
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            44455677788888888877554 45666677788888888887 5664  5555677778888888887 7763  455


Q ss_pred             hhcCCC-CceEEEccccc--cc--cchhhhcCCCCCCEEEccCCC-CC-CcchhhhcCCCCCEEeccCCC-CCCCcHHHh
Q psy3785          93 AVYDLP-HLYKFNVSNNM--IA--KISDNIGNLTSLLVLNISNNK-IE-SLPENIGYMKSLTHIDASHNT-ISYVPWKLF  164 (184)
Q Consensus        93 ~~~~l~-~l~~L~l~~n~--~~--~~~~~~~~~~~L~~l~l~~n~-l~-~l~~~~~~~~~L~~l~L~~n~-l~~~~~~~~  164 (184)
                      .+..++ +|++|++++|.  ++  .++..+..+++|+.+++++|. ++ ..+..+..+++|+.+++++|. +....-..+
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence            566677 77888887773  33  445566677777777777777 54 445556667777777777775 211111123


Q ss_pred             hhhhccccccccc
Q psy3785         165 SKFHQNRSSRFGC  177 (184)
Q Consensus       165 ~~~~~l~~~~~~~  177 (184)
                      ..++.|+.+.+++
T Consensus       269 ~~~~~L~~L~l~~  281 (336)
T 2ast_B          269 GEIPTLKTLQVFG  281 (336)
T ss_dssp             GGCTTCCEEECTT
T ss_pred             hcCCCCCEEeccC
Confidence            3455555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=4.3e-14  Score=99.25  Aligned_cols=126  Identities=22%  Similarity=0.358  Sum_probs=109.1

Q ss_pred             CccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEccccccccchh-hhcCCCCCCEEEccC
Q psy3785          53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISN  130 (184)
Q Consensus        53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~  130 (184)
                      ..+.++++++.+..+|..+.  ++++.|++++|.++.++.. +..+++|++|++++|.++.++. .+..++.|+.+++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            35789999999999986653  6899999999999988754 5689999999999999998865 478999999999999


Q ss_pred             CCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         131 NKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       131 n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      |.++.++.. +..+++|+.+++++|.++++|...+..++.++.+.++.|.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            999988765 67899999999999999999988888888888888876654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.55  E-value=3.9e-14  Score=113.52  Aligned_cols=137  Identities=21%  Similarity=0.264  Sum_probs=86.3

Q ss_pred             ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcc
Q psy3785          27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVS  106 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~  106 (184)
                      ++|+.|++++|.+.+  ++..   .++|++|++++|.++++| .+..+++|++|++++|.++.+|..   ..+|++|+++
T Consensus       111 ~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~  181 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAG  181 (454)
T ss_dssp             TTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred             CCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECc
Confidence            455555555555442  2221   157888888888888877 477888888888888888776643   3478888888


Q ss_pred             ccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccc
Q psy3785         107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCA  178 (184)
Q Consensus       107 ~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~  178 (184)
                      +|.++.+| .+++++.|+.+++++|.++.+|..   .++|+.+++++|.++.+|.  +..++.++.+.++.+
T Consensus       182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          182 NNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNN  247 (454)
T ss_dssp             SSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSS
T ss_pred             CCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCC
Confidence            88888776 477777777777777776655432   1345555555555555442  334444444444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.55  E-value=1.3e-14  Score=112.45  Aligned_cols=158  Identities=22%  Similarity=0.198  Sum_probs=81.1

Q ss_pred             ccccccc-CCCcCccccEEEeecCCCCCCCCcccccCCCCccE-EEecCCccccC-chhhhCCCCCCEEEcccCccccch
Q psy3785          15 RLVSLVG-SASASALLYTYEISSDTGSGESNMSQSEPVLKLKV-LNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMIN   91 (184)
Q Consensus        15 ~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~   91 (184)
                      .+..++. .++.+++|+.|++++|.+.....+..+.+++++.+ +.+.+|++..+ |..+..+++|++|++++|.++.+|
T Consensus        41 ~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~  120 (350)
T 4ay9_X           41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP  120 (350)
T ss_dssp             CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred             cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCC
Confidence            3444543 35666777777777766554222334555555544 44455666665 334566666666666666655433


Q ss_pred             h-hhcCCC--------------------------CceEEEccccccccchhhhcCCCCCCEEEccC-CCCCCcchh-hhc
Q psy3785          92 E-AVYDLP--------------------------HLYKFNVSNNMIAKISDNIGNLTSLLVLNISN-NKIESLPEN-IGY  142 (184)
Q Consensus        92 ~-~~~~l~--------------------------~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~-n~l~~l~~~-~~~  142 (184)
                      . .+....                          .++.|++++|+++.++........++.+++.+ |.++.+|.. +..
T Consensus       121 ~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~  200 (350)
T 4ay9_X          121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG  200 (350)
T ss_dssp             CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred             chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhcc
Confidence            2 111111                          23444445555444444333334455555542 444455432 345


Q ss_pred             CCCCCEEeccCCCCCCCcHHHhhhhhcccc
Q psy3785         143 MKSLTHIDASHNTISYVPWKLFSKFHQNRS  172 (184)
Q Consensus       143 ~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~  172 (184)
                      +++|+.+++++|.|+.+|...+..+..|+.
T Consensus       201 l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~  230 (350)
T 4ay9_X          201 ASGPVILDISRTRIHSLPSYGLENLKKLRA  230 (350)
T ss_dssp             EECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred             CcccchhhcCCCCcCccChhhhccchHhhh
Confidence            566666666666666666555554444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.55  E-value=8.3e-14  Score=115.47  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=35.8

Q ss_pred             CCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccc
Q psy3785          98 PHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGC  177 (184)
Q Consensus        98 ~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~  177 (184)
                      ++|+.|++++|.++.+|   ..++.|+.+++++|.++.+|.   .+++|+.+++++|.|+.+|.. +..++.|+.+.++.
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~  293 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEG  293 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCS
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecC
Confidence            34444555555444443   233445555555555554443   344455555555555555543 33344455444444


Q ss_pred             cc
Q psy3785         178 AL  179 (184)
Q Consensus       178 ~~  179 (184)
                      |.
T Consensus       294 N~  295 (622)
T 3g06_A          294 NP  295 (622)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=8.2e-14  Score=115.51  Aligned_cols=131  Identities=24%  Similarity=0.240  Sum_probs=80.6

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhh
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV   94 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~   94 (184)
                      .+..+|..+.  ++|+.|++++|.+.  .+|.   .+++|+.|++++|.++.+|.   .+++|++|++++|.++.+|.  
T Consensus        51 ~L~~lp~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--  118 (622)
T 3g06_A           51 GLTTLPDCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--  118 (622)
T ss_dssp             CCSCCCSCCC--TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--
T ss_pred             CcCccChhhC--CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--
Confidence            3445555443  67777777777766  3444   45677777777777777765   45677777777777766655  


Q ss_pred             cCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhh-----------------hcCCCCCEEeccCCCCC
Q psy3785          95 YDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENI-----------------GYMKSLTHIDASHNTIS  157 (184)
Q Consensus        95 ~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~-----------------~~~~~L~~l~L~~n~l~  157 (184)
                       .+++|+.|++++|.++.+|..   +++|+.|++++|.++.+|...                 ..+++|+.+++++|.++
T Consensus       119 -~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          119 -LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             -CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC
Confidence             345566666666666655442   255556666655555443221                 22366777777777777


Q ss_pred             CCcH
Q psy3785         158 YVPW  161 (184)
Q Consensus       158 ~~~~  161 (184)
                      ++|.
T Consensus       195 ~l~~  198 (622)
T 3g06_A          195 SLPT  198 (622)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=8.4e-17  Score=115.27  Aligned_cols=137  Identities=18%  Similarity=0.188  Sum_probs=116.5

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY   95 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~   95 (184)
                      +..++..+..++.|+.|++++|.+..  +| .+..+++|+.|++++|.++.+|..+..+++|++|++++|.++.+| .+.
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~  112 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE  112 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence            34444577889999999999999875  56 888899999999999999999988888899999999999999887 567


Q ss_pred             CCCCceEEEccccccccchh--hhcCCCCCCEEEccCCCCCCcch-----------hhhcCCCCCEEeccCCCCCC
Q psy3785          96 DLPHLYKFNVSNNMIAKISD--NIGNLTSLLVLNISNNKIESLPE-----------NIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~l~~-----------~~~~~~~L~~l~L~~n~l~~  158 (184)
                      .+++|+.|++++|.++.++.  .+..++.|+.+++++|.+...++           .+..++.|+.++  ++.++.
T Consensus       113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            78899999999999997754  78899999999999999874422           267899999987  777766

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=7.4e-14  Score=98.06  Aligned_cols=105  Identities=29%  Similarity=0.387  Sum_probs=64.7

Q ss_pred             cEEEecCCccccCchhhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccchhh-hcCCCCCCEEEccCCC
Q psy3785          55 KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISDN-IGNLTSLLVLNISNNK  132 (184)
Q Consensus        55 ~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~~~~-~~~~~~L~~l~l~~n~  132 (184)
                      +.++++++.++.+|..+.  ++++.|++++|.++.+ |..+..+++|++|++++|+++.+|.. +..++.|+.+++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            456666666666665443  5666666666666655 34455566666666666666666543 4566666666666666


Q ss_pred             CCCcchh-hhcCCCCCEEeccCCCCCCCcH
Q psy3785         133 IESLPEN-IGYMKSLTHIDASHNTISYVPW  161 (184)
Q Consensus       133 l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~  161 (184)
                      ++.+|.. +..+++|+.+++++|++...+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            6666543 5566667777777776666443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=7.4e-14  Score=97.65  Aligned_cols=105  Identities=25%  Similarity=0.351  Sum_probs=73.7

Q ss_pred             ccEEEecCCccccCchhhhCCCCCCEEEcccCccccc-hhhhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCC
Q psy3785          54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMI-NEAVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNN  131 (184)
Q Consensus        54 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n  131 (184)
                      .+.+++++|.++.+|..+.  ++++.|++++|.++.+ |..+..+++|++|++++|+++.+++ .+..++.|+.+++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4567777777777766552  5677777777777766 3455667777777777777776654 3567777777777777


Q ss_pred             CCCCcchh-hhcCCCCCEEeccCCCCCCCc
Q psy3785         132 KIESLPEN-IGYMKSLTHIDASHNTISYVP  160 (184)
Q Consensus       132 ~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~  160 (184)
                      .++.++.. +..+++|+.+++++|+++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            77777653 667777888888888777643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.52  E-value=1.8e-14  Score=112.86  Aligned_cols=162  Identities=10%  Similarity=0.096  Sum_probs=89.5

Q ss_pred             cccCCCcCccccEEEeecCCCCCC---CCcccccCC---------CCccEEEecCCcccc--Cc---hhhhCCCCCCEEE
Q psy3785          19 LVGSASASALLYTYEISSDTGSGE---SNMSQSEPV---------LKLKVLNLQYNNLKG--LP---DEIRHLTNLNELA   81 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~l---------~~L~~L~l~~n~l~~--lp---~~~~~l~~L~~L~   81 (184)
                      ++..+..+++|+.|++++|.+...   .++..+..+         ++|+.|++++|.++.  ++   ..+..+++|++|+
T Consensus       114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  193 (386)
T 2ca6_A          114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK  193 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence            333445566667777766665421   234444444         566666666666652  33   3455566666666


Q ss_pred             cccCccc------cchhhhcCCCCceEEEccccccc-----cchhhhcCCCCCCEEEccCCCCCC-----cchhhh--cC
Q psy3785          82 LNNNQLE------MINEAVYDLPHLYKFNVSNNMIA-----KISDNIGNLTSLLVLNISNNKIES-----LPENIG--YM  143 (184)
Q Consensus        82 l~~n~l~------~~~~~~~~l~~l~~L~l~~n~~~-----~~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~--~~  143 (184)
                      +++|.++      .++..+..+++|+.|++++|.++     .+|..+..++.|+.|++++|.++.     ++..+.  .+
T Consensus       194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  273 (386)
T 2ca6_A          194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN  273 (386)
T ss_dssp             CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred             CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence            6666665      12224445666666666666663     345555666666666666666652     233332  25


Q ss_pred             CCCCEEeccCCCCCC-----CcHHHhhhhhcccccccccccc
Q psy3785         144 KSLTHIDASHNTISY-----VPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       144 ~~L~~l~L~~n~l~~-----~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      ++|+.+++++|.++.     +|..++..++.|+.+.++.+.+
T Consensus       274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            666666666666665     5554444455666555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.48  E-value=3.5e-14  Score=110.51  Aligned_cols=157  Identities=16%  Similarity=0.174  Sum_probs=82.1

Q ss_pred             CCcCc-cccEEEeecCCCCCCCCcccccCC-----CCccEEEecCCccccCc-hh----hhCC-CCCCEEEcccCccccc
Q psy3785          23 ASASA-LLYTYEISSDTGSGESNMSQSEPV-----LKLKVLNLQYNNLKGLP-DE----IRHL-TNLNELALNNNQLEMI   90 (184)
Q Consensus        23 ~~~~~-~l~~l~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~lp-~~----~~~l-~~L~~L~l~~n~l~~~   90 (184)
                      +..++ .|+.|++++|.+.+ ..+..+..+     ++|++|++++|.+++.+ ..    +... ++|++|++++|.++..
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            34444 56666666666554 223333332     56666666666666532 21    3333 5666666666666643


Q ss_pred             hh-h----hcC-CCCceEEEccccccc-----cchhhhcCCC-CCCEEEccCCCCCCcch-----hhhcC-CCCCEEecc
Q psy3785          91 NE-A----VYD-LPHLYKFNVSNNMIA-----KISDNIGNLT-SLLVLNISNNKIESLPE-----NIGYM-KSLTHIDAS  152 (184)
Q Consensus        91 ~~-~----~~~-l~~l~~L~l~~n~~~-----~~~~~~~~~~-~L~~l~l~~n~l~~l~~-----~~~~~-~~L~~l~L~  152 (184)
                      +. .    +.. ..+|++|++++|.++     .++..+...+ .|+.+++++|.++....     .+... ++|+.++++
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence            31 1    222 236666666666665     2233344444 66777777766653321     23344 367777777


Q ss_pred             CCCCCC-----CcHHHhhhhhcccccccccccc
Q psy3785         153 HNTISY-----VPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       153 ~n~l~~-----~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      +|.++.     ++..+....+.++.+.++.|.+
T Consensus       205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             CCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            777666     2222222234566666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.47  E-value=3.1e-14  Score=110.80  Aligned_cols=151  Identities=15%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             ccccEEEeecCCCCCCCCcc----cccCC-CCccEEEecCCccccCch-h----hhC-CCCCCEEEcccCccc-----cc
Q psy3785          27 ALLYTYEISSDTGSGESNMS----QSEPV-LKLKVLNLQYNNLKGLPD-E----IRH-LTNLNELALNNNQLE-----MI   90 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~----~~~~l-~~L~~L~l~~n~l~~lp~-~----~~~-l~~L~~L~l~~n~l~-----~~   90 (184)
                      +.|+.|++++|.+.+ ..+.    .+..+ ++|++|++++|.+++.+. .    +.. .++|++|++++|.++     .+
T Consensus        80 ~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            566666666666543 2222    12233 566666666666665322 1    222 236666666666665     22


Q ss_pred             hhhhcCCC-CceEEEccccccccch-----hhhcCC-CCCCEEEccCCCCCC-----cchhhhc-CCCCCEEeccCCCCC
Q psy3785          91 NEAVYDLP-HLYKFNVSNNMIAKIS-----DNIGNL-TSLLVLNISNNKIES-----LPENIGY-MKSLTHIDASHNTIS  157 (184)
Q Consensus        91 ~~~~~~l~-~l~~L~l~~n~~~~~~-----~~~~~~-~~L~~l~l~~n~l~~-----l~~~~~~-~~~L~~l~L~~n~l~  157 (184)
                      +..+...+ +|++|++++|.++..+     ..+..+ +.|+.+++++|.++.     ++..+.. .++|+.+++++|.++
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            33333343 6666666666665331     123344 366666666666654     3444444 335666666666666


Q ss_pred             CCcHH----Hhhhhhcccccccccc
Q psy3785         158 YVPWK----LFSKFHQNRSSRFGCA  178 (184)
Q Consensus       158 ~~~~~----~~~~~~~l~~~~~~~~  178 (184)
                      ..+..    .+..+..++.+.++.+
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccC
Confidence            64331    2233345555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=9.4e-13  Score=92.38  Aligned_cols=105  Identities=24%  Similarity=0.270  Sum_probs=89.0

Q ss_pred             cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEccc
Q psy3785          30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVSN  107 (184)
Q Consensus        30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~~  107 (184)
                      +.++++++.+.  .+|..+.  ++|++|++++|.++++ |..+..+++|+.|++++|+++.+|.. +..+++|+.|++++
T Consensus        15 ~~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            67888888875  6677654  7899999999999997 56688999999999999999988865 46899999999999


Q ss_pred             cccccchhh-hcCCCCCCEEEccCCCCCCcch
Q psy3785         108 NMIAKISDN-IGNLTSLLVLNISNNKIESLPE  138 (184)
Q Consensus       108 n~~~~~~~~-~~~~~~L~~l~l~~n~l~~l~~  138 (184)
                      |.++.+|+. +..++.|+.+++++|.+...+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999988764 8889999999999999885543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=1e-12  Score=91.80  Aligned_cols=103  Identities=27%  Similarity=0.319  Sum_probs=87.0

Q ss_pred             ccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchhh-hcCCCCceEEEcc
Q psy3785          29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINEA-VYDLPHLYKFNVS  106 (184)
Q Consensus        29 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~  106 (184)
                      .+.++++++.+.  .+|..+  .+++++|++++|.++++ |..+..+++|++|++++|+++.+|.. +..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~--~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA--SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC--ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            467888888876  566655  37899999999999997 56688899999999999999988755 4689999999999


Q ss_pred             ccccccchh-hhcCCCCCCEEEccCCCCCC
Q psy3785         107 NNMIAKISD-NIGNLTSLLVLNISNNKIES  135 (184)
Q Consensus       107 ~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~  135 (184)
                      +|.++.+++ .+..++.|+.+++++|.++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999998865 58889999999999998873

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.42  E-value=4.1e-13  Score=104.03  Aligned_cols=159  Identities=18%  Similarity=0.224  Sum_probs=111.6

Q ss_pred             cccccc-ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecC-CccccCchh-hhCCC-CCCEEEcccCcccc
Q psy3785          14 ARLVSL-VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQY-NNLKGLPDE-IRHLT-NLNELALNNNQLEM   89 (184)
Q Consensus        14 ~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~-~~~l~-~L~~L~l~~n~l~~   89 (184)
                      ..+..+ +..+..+++|+.+++++|.+.. ..+..+....++..+++.+ +.+..++.. +..+. .++.|++++|.++.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            334444 3445677777777777777664 2233444455666777754 456666543 44443 68889999999999


Q ss_pred             chhhhcCCCCceEEEccc-cccccchh-hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCC-CCCCCcHHHhhh
Q psy3785          90 INEAVYDLPHLYKFNVSN-NMIAKISD-NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN-TISYVPWKLFSK  166 (184)
Q Consensus        90 ~~~~~~~l~~l~~L~l~~-n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n-~l~~~~~~~~~~  166 (184)
                      +|...+...+++.+.+.+ |.++.+|. .+.+++.|+.+++++|+++.+|..  .+..|..+.+.++ .++.+|.  +..
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~--l~~  244 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT--LEK  244 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC--TTT
T ss_pred             CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC--chh
Confidence            988877788999999975 67888875 578999999999999999999863  3556666665554 5777874  455


Q ss_pred             hhccccccccc
Q psy3785         167 FHQNRSSRFGC  177 (184)
Q Consensus       167 ~~~l~~~~~~~  177 (184)
                      +.+|+...+..
T Consensus       245 l~~L~~l~l~~  255 (350)
T 4ay9_X          245 LVALMEASLTY  255 (350)
T ss_dssp             CCSCCEEECSC
T ss_pred             CcChhhCcCCC
Confidence            66666555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.36  E-value=4.2e-13  Score=107.05  Aligned_cols=159  Identities=16%  Similarity=0.162  Sum_probs=115.6

Q ss_pred             CCcCccccEEEeecCCCCCC---CCcccccCCCCccEEEecCCccccC-chhh-hCCC----CCCEEEcccCccc-----
Q psy3785          23 ASASALLYTYEISSDTGSGE---SNMSQSEPVLKLKVLNLQYNNLKGL-PDEI-RHLT----NLNELALNNNQLE-----   88 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~-~~l~----~L~~L~l~~n~l~-----   88 (184)
                      +..+++|+.+++++|.+...   .++..+..+++|++|++++|.+++. +..+ ..++    +|++|++++|.++     
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            56788899999999987642   3466777789999999999988762 2232 3344    6999999999888     


Q ss_pred             cchhhhcCCCCceEEEccccccccc-hh----h-hcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCC
Q psy3785          89 MINEAVYDLPHLYKFNVSNNMIAKI-SD----N-IGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTIS  157 (184)
Q Consensus        89 ~~~~~~~~l~~l~~L~l~~n~~~~~-~~----~-~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~  157 (184)
                      .++..+..+++|++|++++|.++.. +.    . ....++|+.+++++|.++.     ++..+..+++|+.+++++|.++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            3467777889999999999988732 22    2 2235679999999998884     3455677899999999999987


Q ss_pred             CC-cHHHhhh----hhccccccccccccc
Q psy3785         158 YV-PWKLFSK----FHQNRSSRFGCALIM  181 (184)
Q Consensus       158 ~~-~~~~~~~----~~~l~~~~~~~~~~~  181 (184)
                      .. +..+...    ...++.+.++.+.+.
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  212 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVT  212 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence            73 3333333    337777777766543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=7e-12  Score=96.74  Aligned_cols=90  Identities=23%  Similarity=0.261  Sum_probs=45.4

Q ss_pred             CcccccCCCCccEEEecC-CccccCc-hhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccchhhhcCC
Q psy3785          44 NMSQSEPVLKLKVLNLQY-NNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKISDNIGNL  120 (184)
Q Consensus        44 ~~~~~~~l~~L~~L~l~~-n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~~~~~~~  120 (184)
                      +|. +..+.+|++|++++ |.++.+| ..|..+++|+.|+|++|+++.++ ..+..+++|+.|++++|.++.+|+.....
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  102 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG  102 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence            444 55555555555553 5555543 33555555555555555555443 23445555555555555555554322222


Q ss_pred             CCCCEEEccCCCCC
Q psy3785         121 TSLLVLNISNNKIE  134 (184)
Q Consensus       121 ~~L~~l~l~~n~l~  134 (184)
                      ..|+.|++.+|.+.
T Consensus       103 ~~L~~l~l~~N~~~  116 (347)
T 2ifg_A          103 LSLQELVLSGNPLH  116 (347)
T ss_dssp             CCCCEEECCSSCCC
T ss_pred             CCceEEEeeCCCcc
Confidence            22555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.31  E-value=3.7e-13  Score=107.35  Aligned_cols=37  Identities=14%  Similarity=0.165  Sum_probs=17.1

Q ss_pred             CCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCCC
Q psy3785         122 SLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       122 ~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      .|+.+++++|.++.     ++..+..+++|+.+++++|.++.
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            44444444444442     22333444555555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=2.3e-12  Score=100.79  Aligned_cols=133  Identities=18%  Similarity=0.164  Sum_probs=89.3

Q ss_pred             ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-----chhh-hCCCCCCEEEcccCcccc-----chhhhc
Q psy3785          27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-----PDEI-RHLTNLNELALNNNQLEM-----INEAVY   95 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-----p~~~-~~l~~L~~L~l~~n~l~~-----~~~~~~   95 (184)
                      +.|+.|++++|.+.+..+......+++|+.|++++|.+++.     ...+ ...++|++|++++|.++.     ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            57788888888765433333333356778888888877752     2222 235678888888888763     334445


Q ss_pred             CCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCCCC
Q psy3785          96 DLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTISYV  159 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~~  159 (184)
                      ..++|++|++++|.++.     ++..+...+.|+.|++++|.++.     +...+...+.|+.++|++|.|+..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            67778888888888763     24456667788888888888873     234455677888888888887763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.22  E-value=2.7e-11  Score=92.99  Aligned_cols=100  Identities=16%  Similarity=0.183  Sum_probs=81.1

Q ss_pred             CCCCCEEEcccCccccchh-hhcCCCCceEEEccccccccch-hhhcCCCCCC-EEEccCCCCCCcc-hhhhcCCCCCEE
Q psy3785          74 LTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLL-VLNISNNKIESLP-ENIGYMKSLTHI  149 (184)
Q Consensus        74 l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~-~l~l~~n~l~~l~-~~~~~~~~L~~l  149 (184)
                      +++|+.+++++|.++.+|. .|..+.+|+.+.+++| ++.++ ..|.+|..|+ .+.+.+ .++.++ ..+..+++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            6788999999888888874 4557889999999887 77775 4688888898 899888 777775 447788999999


Q ss_pred             eccCCCCCCCcHHHhhhhhccccccc
Q psy3785         150 DASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus       150 ~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      +++.|.++.++...|..+++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999988888888888876653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=5.9e-11  Score=91.51  Aligned_cols=94  Identities=19%  Similarity=0.146  Sum_probs=46.3

Q ss_pred             ccccccCCCcCccccEEEeec-CCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccchhh
Q psy3785          16 LVSLVGSASASALLYTYEISS-DTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMINEA   93 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~~~   93 (184)
                      +..+|. +..+++|+.|++++ |.+.. ..+..+..+++|+.|++++|.+++++ ..|..+++|+.|+|++|.++.+|..
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence            344444 55555555555553 44432 22344555555555555555555542 2345555555555555555555433


Q ss_pred             hcCCCCceEEEccccccc
Q psy3785          94 VYDLPHLYKFNVSNNMIA  111 (184)
Q Consensus        94 ~~~l~~l~~L~l~~n~~~  111 (184)
                      ......|+.|++.+|.+.
T Consensus        99 ~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           99 TVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             TTCSCCCCEEECCSSCCC
T ss_pred             HcccCCceEEEeeCCCcc
Confidence            332222555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=2.7e-12  Score=100.34  Aligned_cols=156  Identities=13%  Similarity=0.096  Sum_probs=113.9

Q ss_pred             CccccEEEeecCCCCCCC---CcccccC-CCCccEEEecCCcccc--CchhhhCCCCCCEEEcccCccccch-----hhh
Q psy3785          26 SALLYTYEISSDTGSGES---NMSQSEP-VLKLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLEMIN-----EAV   94 (184)
Q Consensus        26 ~~~l~~l~l~~~~~~~~~---~~~~~~~-l~~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~~~~-----~~~   94 (184)
                      ++.++.+++++|.+....   +...+.. .++|++|++++|.++.  +..-...+++++.|++++|.++...     ..+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467899999999987422   2222332 3689999999999986  2222233568999999999998432     222


Q ss_pred             -cCCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCCCCcH-H
Q psy3785          95 -YDLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTISYVPW-K  162 (184)
Q Consensus        95 -~~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~~~~-~  162 (184)
                       ...++|++|++++|.++.     ++..+..++.|+.|++++|.++.     +...+...+.|+.++|++|.|+.... .
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             246789999999999974     34556788999999999999983     34556778899999999999987432 2


Q ss_pred             Hh---hhhhccccccccccccc
Q psy3785         163 LF---SKFHQNRSSRFGCALIM  181 (184)
Q Consensus       163 ~~---~~~~~l~~~~~~~~~~~  181 (184)
                      +.   ...+.|+.+.++.|.+-
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            22   34477888888877653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.17  E-value=5e-11  Score=91.46  Aligned_cols=149  Identities=13%  Similarity=0.161  Sum_probs=99.2

Q ss_pred             CccccEEEeecCCCCC-------------------CCCcccccC--------CCCccEEEecCCccccCch-hhhCCCCC
Q psy3785          26 SALLYTYEISSDTGSG-------------------ESNMSQSEP--------VLKLKVLNLQYNNLKGLPD-EIRHLTNL   77 (184)
Q Consensus        26 ~~~l~~l~l~~~~~~~-------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~lp~-~~~~l~~L   77 (184)
                      +++|+.||+++|.+..                   ...+..+..        +++|+.+.+.. .++.+++ .|..+++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            6778888888887661                   011224445        77888888887 7777754 47778888


Q ss_pred             CEEEcccCccccchhh-hc-------------------------------------------------------------
Q psy3785          78 NELALNNNQLEMINEA-VY-------------------------------------------------------------   95 (184)
Q Consensus        78 ~~L~l~~n~l~~~~~~-~~-------------------------------------------------------------   95 (184)
                      +.+++.+|.++.++.. |.                                                             
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            8888887765332211 11                                                             


Q ss_pred             -----------------CCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCC-EEeccCCC
Q psy3785          96 -----------------DLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLT-HIDASHNT  155 (184)
Q Consensus        96 -----------------~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~-~l~L~~n~  155 (184)
                                       .+++|+.+++++|.++.+++ .|.+|..|+.+++.+| ++.++.. +..+++|+ .+.+.+ .
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence                             14567777777777777753 5777777888887776 6666543 66677787 777777 6


Q ss_pred             CCCCcHHHhhhhhccccccccc
Q psy3785         156 ISYVPWKLFSKFHQNRSSRFGC  177 (184)
Q Consensus       156 l~~~~~~~~~~~~~l~~~~~~~  177 (184)
                      ++.++...|..+..|+.+.+..
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECS
T ss_pred             ceEEchhhhhCCccCCEEEeCC
Confidence            7777777777777777666643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.07  E-value=2.9e-11  Score=99.23  Aligned_cols=132  Identities=11%  Similarity=0.045  Sum_probs=64.6

Q ss_pred             CccccEEEeecCCCCCCCCcccccC-CCCccEEEec----CCccccCc------hhhhCCCCCCEEEcccCc--cc-cch
Q psy3785          26 SALLYTYEISSDTGSGESNMSQSEP-VLKLKVLNLQ----YNNLKGLP------DEIRHLTNLNELALNNNQ--LE-MIN   91 (184)
Q Consensus        26 ~~~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~lp------~~~~~l~~L~~L~l~~n~--l~-~~~   91 (184)
                      +++|+.|+++.+.+.+ ..+..+.. +++|+.|+++    .+.+++.|      ..+..+++|+.|++++|.  ++ ...
T Consensus       377 ~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          377 CQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             CTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             CccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            4445555554444433 11222222 4455555553    33444321      113445556666654332  33 111


Q ss_pred             hhhc-CCCCceEEEcccccccc--chhhhcCCCCCCEEEccCCCCC--CcchhhhcCCCCCEEeccCCCCCC
Q psy3785          92 EAVY-DLPHLYKFNVSNNMIAK--ISDNIGNLTSLLVLNISNNKIE--SLPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        92 ~~~~-~l~~l~~L~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~l~--~l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      ..+. .+++|++|++++|.++.  ++..+..+++|+.|++++|.++  .++.....+++|+.+++++|.++.
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            2222 35566666666666652  3344456666666666666655  233334556666666666666655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.06  E-value=9.2e-11  Score=96.26  Aligned_cols=82  Identities=13%  Similarity=0.086  Sum_probs=37.9

Q ss_pred             cCccccEEEeecCCCCCCC---CcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCccccchhhhcC
Q psy3785          25 ASALLYTYEISSDTGSGES---NMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEMINEAVYD   96 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~   96 (184)
                      .+++|+.|++++|.+.+..   ++.....+++|+.|++++|.+++     ++..+..+++|++|++++|.+..++..+..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            3445555555555443211   22223334555555555555542     222334455555555555555544444444


Q ss_pred             CCCceEEEcc
Q psy3785          97 LPHLYKFNVS  106 (184)
Q Consensus        97 l~~l~~L~l~  106 (184)
                      +++|+.+.++
T Consensus       242 ~~~L~~L~l~  251 (592)
T 3ogk_B          242 AANLEEFCGG  251 (592)
T ss_dssp             CTTCCEEEEC
T ss_pred             hhHHHhhccc
Confidence            4445554444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.96  E-value=1.2e-09  Score=77.20  Aligned_cols=114  Identities=15%  Similarity=0.175  Sum_probs=86.2

Q ss_pred             cccccCCCCccEEEecCC-cccc-----CchhhhCCCCCCEEEcccCcccc-----chhhhcCCCCceEEEcccccccc-
Q psy3785          45 MSQSEPVLKLKVLNLQYN-NLKG-----LPDEIRHLTNLNELALNNNQLEM-----INEAVYDLPHLYKFNVSNNMIAK-  112 (184)
Q Consensus        45 ~~~~~~l~~L~~L~l~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~l~~l~~L~l~~n~~~~-  112 (184)
                      ...+...+.|++|++++| .++.     +...+...++|++|++++|.+..     +...+...++|++|++++|.++. 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344556778888888888 7775     45556667888999999998872     33445556789999999998883 


Q ss_pred             ----chhhhcCCCCCCEEEc--cCCCCCC-----cchhhhcCCCCCEEeccCCCCCC
Q psy3785         113 ----ISDNIGNLTSLLVLNI--SNNKIES-----LPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       113 ----~~~~~~~~~~L~~l~l--~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                          +...+...+.|+.+++  ++|.+..     +...+...+.|+.+++++|.+..
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence                3556777888999999  8898883     44556778899999999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.93  E-value=2.1e-10  Score=94.10  Aligned_cols=41  Identities=17%  Similarity=0.082  Sum_probs=18.1

Q ss_pred             CccccEEEeecCC-CCCCCCcccccCCCCccEEEecCCcccc
Q psy3785          26 SALLYTYEISSDT-GSGESNMSQSEPVLKLKVLNLQYNNLKG   66 (184)
Q Consensus        26 ~~~l~~l~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~   66 (184)
                      +++|+.|++++|. +....++.....+++|++|++++|.+++
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence            4455555555552 2211123333344555555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.80  E-value=7e-10  Score=90.96  Aligned_cols=81  Identities=19%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             CcCccccEEEeecCCCCCCC---CcccccCCCCccEEEecCCc--ccc--CchhhhCCCCCCEEEcccC-ccccchhhhc
Q psy3785          24 SASALLYTYEISSDTGSGES---NMSQSEPVLKLKVLNLQYNN--LKG--LPDEIRHLTNLNELALNNN-QLEMINEAVY   95 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~--l~~--lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~   95 (184)
                      ..+++|+.|++++|.+.+..   ++.....+++|+.|++++|.  ++.  ++.-+..+++|++|++++| .++.++..+.
T Consensus       153 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~  232 (594)
T 2p1m_B          153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ  232 (594)
T ss_dssp             HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred             HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence            46788888888888755422   23333356688888888876  221  2222344677888888777 3334444344


Q ss_pred             CCCCceEEE
Q psy3785          96 DLPHLYKFN  104 (184)
Q Consensus        96 ~l~~l~~L~  104 (184)
                      .+++|+.+.
T Consensus       233 ~~~~L~~L~  241 (594)
T 2p1m_B          233 RAPQLEELG  241 (594)
T ss_dssp             HCTTCSEEE
T ss_pred             cCCcceEcc
Confidence            444455544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.77  E-value=2.9e-09  Score=75.23  Aligned_cols=114  Identities=11%  Similarity=0.102  Sum_probs=91.2

Q ss_pred             cCCCcCccccEEEeecC-CCCCC---CCcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCcccc--
Q psy3785          21 GSASASALLYTYEISSD-TGSGE---SNMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEM--   89 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~-~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~--   89 (184)
                      ..+...+.|+.|++++| .+...   .+...+...++|++|++++|.+++     +...+...++|++|++++|.++.  
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34457889999999999 76642   245566777899999999999985     45666777899999999999983  


Q ss_pred             ---chhhhcCCCCceEEEc--ccccccc-----chhhhcCCCCCCEEEccCCCCC
Q psy3785          90 ---INEAVYDLPHLYKFNV--SNNMIAK-----ISDNIGNLTSLLVLNISNNKIE  134 (184)
Q Consensus        90 ---~~~~~~~l~~l~~L~l--~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~  134 (184)
                         +...+....+|++|++  ++|.++.     +...+...+.|+.+++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               4456667789999999  8899983     3456677789999999999876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.72  E-value=6.1e-08  Score=76.41  Aligned_cols=57  Identities=7%  Similarity=0.021  Sum_probs=24.6

Q ss_pred             hhcCCCCCCEEEccCCCCC-----Ccch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccc
Q psy3785         116 NIGNLTSLLVLNISNNKIE-----SLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSS  173 (184)
Q Consensus       116 ~~~~~~~L~~l~l~~n~l~-----~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~  173 (184)
                      .|.+|+.|+.+.+.++.+.     .++. .+..+++|+.+.+. +.++.++...|..+..|+.+
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l  328 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQL  328 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEE
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEE
Confidence            3445555555555444332     2221 23344444444444 22444444444444444433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=3.5e-08  Score=76.75  Aligned_cols=61  Identities=20%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             CCCceEEEcccccccc-chhh---hcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCC
Q psy3785          97 LPHLYKFNVSNNMIAK-ISDN---IGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTIS  157 (184)
Q Consensus        97 l~~l~~L~l~~n~~~~-~~~~---~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~  157 (184)
                      +++|+.|++.+|.++. .+..   ...+++|+.|+++.|.++.     ++..+..+++|+.++++.|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4555555555555441 1111   1234555555555555542     1222334455555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.64  E-value=6.9e-08  Score=75.10  Aligned_cols=162  Identities=15%  Similarity=0.100  Sum_probs=108.3

Q ss_pred             cccccCCCcCccccEEEeecCCCCC--------CCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccc
Q psy3785          17 VSLVGSASASALLYTYEISSDTGSG--------ESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLE   88 (184)
Q Consensus        17 ~~~~~~~~~~~~l~~l~l~~~~~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~   88 (184)
                      ..+..+...+++|+.|.+.+.....        ..+...+..+|+|+.|.+.++.-..++. + .+++|+.|.+..+.++
T Consensus       129 ~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          129 DGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLP  206 (362)
T ss_dssp             HHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCC
T ss_pred             HHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCC
Confidence            3455666678899999997654311        1345556778999999999884223443 3 3789999999998876


Q ss_pred             cch-hhhc--CCCCceEEEccc--cc------cccchhhh--cCCCCCCEEEccCCCCCC-cchhh---hcCCCCCEEec
Q psy3785          89 MIN-EAVY--DLPHLYKFNVSN--NM------IAKISDNI--GNLTSLLVLNISNNKIES-LPENI---GYMKSLTHIDA  151 (184)
Q Consensus        89 ~~~-~~~~--~l~~l~~L~l~~--n~------~~~~~~~~--~~~~~L~~l~l~~n~l~~-l~~~~---~~~~~L~~l~L  151 (184)
                      .-. ..+.  .+++|+.|.++.  +.      +..+...+  ..+++|+.|++.+|.+.. .+..+   ..++.|+.|+|
T Consensus       207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL  286 (362)
T 2ra8_A          207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI  286 (362)
T ss_dssp             HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred             hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence            321 2332  689999999853  11      22222222  357999999999998872 33333   24778999999


Q ss_pred             cCCCCCCC-cHHHh---hhhhcccccccccccc
Q psy3785         152 SHNTISYV-PWKLF---SKFHQNRSSRFGCALI  180 (184)
Q Consensus       152 ~~n~l~~~-~~~~~---~~~~~l~~~~~~~~~~  180 (184)
                      +.|.++.. ...+.   ..++.|+.+.++++.+
T Consensus       287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            99998872 23333   3457778777776655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.63  E-value=2.7e-07  Score=72.71  Aligned_cols=127  Identities=13%  Similarity=0.191  Sum_probs=73.8

Q ss_pred             ccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccchh-hhcCCCCC
Q psy3785          46 SQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKISD-NIGNLTSL  123 (184)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L  123 (184)
                      ..+..+.+|+.+++..|.++.++........|+.+.+..+ ++.++ ..|..+.+|+.+.+..+ ++.++. .|.+ ..|
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L  250 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI  250 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence            3455555666666666655555444333455666666532 45554 33335556666666553 444432 3333 456


Q ss_pred             CEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCC-----CCcHHHhhhhhcccccccc
Q psy3785         124 LVLNISNNKIESLPE-NIGYMKSLTHIDASHNTIS-----YVPWKLFSKFHQNRSSRFG  176 (184)
Q Consensus       124 ~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~-----~~~~~~~~~~~~l~~~~~~  176 (184)
                      +.+.+ .+.++.++. .+..+++|+.+.+.+|.+.     .++...|..+.+|+.+.+.
T Consensus       251 ~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          251 TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            66666 344555543 4667888888888887765     4777788877777766554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=1e-06  Score=65.62  Aligned_cols=64  Identities=27%  Similarity=0.427  Sum_probs=45.2

Q ss_pred             CCCCceEEEccccccccc---hhhhcCCCCCCEEEccCCCCCCcchhhhcCC--CCCEEeccCCCCCC-Cc
Q psy3785          96 DLPHLYKFNVSNNMIAKI---SDNIGNLTSLLVLNISNNKIESLPENIGYMK--SLTHIDASHNTISY-VP  160 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~---~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~--~L~~l~L~~n~l~~-~~  160 (184)
                      .+++|+.|++++|.++.+   +..+..++.|+.|+|++|.++.+.. +..++  .|+.++|++|++++ +|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccC
Confidence            467788888888887754   3455677888888888888886632 33333  78888888888876 54

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=3.9e-06  Score=62.49  Aligned_cols=93  Identities=23%  Similarity=0.284  Sum_probs=65.2

Q ss_pred             EEecCCccccCch----hhhCCCCCCEEEcccCccccch---hhhcCCCCceEEEccccccccch--hhhcCCCCCCEEE
Q psy3785          57 LNLQYNNLKGLPD----EIRHLTNLNELALNNNQLEMIN---EAVYDLPHLYKFNVSNNMIAKIS--DNIGNLTSLLVLN  127 (184)
Q Consensus        57 L~l~~n~l~~lp~----~~~~l~~L~~L~l~~n~l~~~~---~~~~~l~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~  127 (184)
                      ++++.|....++.    ...++++|++|+|++|+++.++   ..+..+++|+.|++++|.++.+.  ..+..+ .|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            4555664333221    2255788999999999988654   44557889999999999988652  234444 899999


Q ss_pred             ccCCCCC-Ccc-------hhhhcCCCCCEEe
Q psy3785         128 ISNNKIE-SLP-------ENIGYMKSLTHID  150 (184)
Q Consensus       128 l~~n~l~-~l~-------~~~~~~~~L~~l~  150 (184)
                      +.+|.+. .+|       ..+..+|+|+.||
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            9999987 343       2367788888886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.10  E-value=8e-06  Score=57.94  Aligned_cols=111  Identities=17%  Similarity=0.227  Sum_probs=78.3

Q ss_pred             cccCCCCccEEEecCC-cccc-----CchhhhCCCCCCEEEcccCcccc-----chhhhcCCCCceEEEcccccccc---
Q psy3785          47 QSEPVLKLKVLNLQYN-NLKG-----LPDEIRHLTNLNELALNNNQLEM-----INEAVYDLPHLYKFNVSNNMIAK---  112 (184)
Q Consensus        47 ~~~~l~~L~~L~l~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~l~~l~~L~l~~n~~~~---  112 (184)
                      .+..-+.|++|+++++ .+..     +.+.+..-++|+.|+|++|.+..     +...+..-..|+.|++++|.|+.   
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3445577888888875 7764     45556667788999999888872     33444455688999999998882   


Q ss_pred             --chhhhcCCCCCCEEEccCCC---CC-----CcchhhhcCCCCCEEeccCCCCC
Q psy3785         113 --ISDNIGNLTSLLVLNISNNK---IE-----SLPENIGYMKSLTHIDASHNTIS  157 (184)
Q Consensus       113 --~~~~~~~~~~L~~l~l~~n~---l~-----~l~~~~~~~~~L~~l~L~~n~l~  157 (184)
                        +.+.+..-..|+.|+++++.   +.     .+...+...+.|..++++.|.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              34566777789999998653   33     23445677888999998876544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.92  E-value=2.3e-05  Score=54.59  Aligned_cols=83  Identities=12%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             CCccEEEecCCccccC-chhhhCCCCCCEEEcccCc-cccch-hhhcCC----CCceEEEccccc-cccc-hhhhcCCCC
Q psy3785          52 LKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQ-LEMIN-EAVYDL----PHLYKFNVSNNM-IAKI-SDNIGNLTS  122 (184)
Q Consensus        52 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~l----~~l~~L~l~~n~-~~~~-~~~~~~~~~  122 (184)
                      ..|+.|++++|.++.. -..+..+++|+.|++++|. ++... ..+..+    ++|++|++++|. ++.- -..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4566666666666542 1334556667777777763 55221 223332    357777777764 6632 134556777


Q ss_pred             CCEEEccCCC-CC
Q psy3785         123 LLVLNISNNK-IE  134 (184)
Q Consensus       123 L~~l~l~~n~-l~  134 (184)
                      |+.|+++++. ++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            7777777763 44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=4.7e-05  Score=52.99  Aligned_cols=82  Identities=9%  Similarity=0.025  Sum_probs=43.8

Q ss_pred             ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCc-cccC-chhhhCC----CCCCEEEcccCc-cccch-hhhcCCC
Q psy3785          27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNN-LKGL-PDEIRHL----TNLNELALNNNQ-LEMIN-EAVYDLP   98 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l-p~~~~~l----~~L~~L~l~~n~-l~~~~-~~~~~l~   98 (184)
                      ..|+.+|++++.+++..+ ..+..+++|+.|++++|. +++- -..+..+    ++|+.|++++|. ++.-. ..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            356666666666554332 334556666666666663 5541 1223332    246666666663 55221 2334566


Q ss_pred             CceEEEccccc
Q psy3785          99 HLYKFNVSNNM  109 (184)
Q Consensus        99 ~l~~L~l~~n~  109 (184)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            66666666663

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.78  E-value=1.4e-05  Score=56.66  Aligned_cols=110  Identities=18%  Similarity=0.181  Sum_probs=82.7

Q ss_pred             CcCccccEEEeecC-CCCCC---CCcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCcccc-----
Q psy3785          24 SASALLYTYEISSD-TGSGE---SNMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEM-----   89 (184)
Q Consensus        24 ~~~~~l~~l~l~~~-~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----   89 (184)
                      ..-+.|+.|+++++ .+.+.   .+...+.....|+.|++++|.+++     +.+.+..-++|++|+|++|.|..     
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45678999999986 55431   245667778899999999999995     45666777899999999999982     


Q ss_pred             chhhhcCCCCceEEEcccc---ccc-----cchhhhcCCCCCCEEEccCCCC
Q psy3785          90 INEAVYDLPHLYKFNVSNN---MIA-----KISDNIGNLTSLLVLNISNNKI  133 (184)
Q Consensus        90 ~~~~~~~l~~l~~L~l~~n---~~~-----~~~~~~~~~~~L~~l~l~~n~l  133 (184)
                      +...+..-..|+.|+++++   .+.     .+...+..-++|+.+++..|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3345555667999999865   444     2344566778999999987654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.74  E-value=0.00019  Score=55.56  Aligned_cols=141  Identities=13%  Similarity=0.132  Sum_probs=86.3

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-hhhcCCCCceE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYK  102 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~  102 (184)
                      ....++.+.+..+-..  .....+..+..|+.+.+..+ ++.+. ..+..+..++.+.+..+ ++.++ ..+..+.+|+.
T Consensus       215 ~~~~l~~i~~~~~~~~--i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          215 YGKNLKKITITSGVTT--LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TCSSCSEEECCTTCCE--ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             cccccceeeeccceeE--EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            3444555554433211  22334555677777777654 45553 34666777888877543 55555 34456778888


Q ss_pred             EEccccccccch-hhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccc
Q psy3785         103 FNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR  171 (184)
Q Consensus       103 L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~  171 (184)
                      +.+.++.++.++ ..|.+|..|+.+.+..+ ++.+.. .+..+.+|+.+.+..+ ++.+....|..+..++
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK  359 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence            888877777774 46778888888888644 666654 3566778887777544 5556666665554433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.60  E-value=0.00026  Score=55.26  Aligned_cols=104  Identities=13%  Similarity=0.257  Sum_probs=60.2

Q ss_pred             cccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchh-hhcCCCCceEEEccccccccch-hhhcCCCCC
Q psy3785          47 QSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINE-AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSL  123 (184)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L  123 (184)
                      .+..+..|+.+.+..+.. .+ ...+.++..|+.+.+. +.++.++. .|..+.+|+.+.+.++ ++.+. ..|.+|..|
T Consensus       260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            455566666666654432 23 2335566667777664 34555553 3445667777777653 55553 356667777


Q ss_pred             CEEEccCCCCCCcch-hhhcCCCCCEEeccCC
Q psy3785         124 LVLNISNNKIESLPE-NIGYMKSLTHIDASHN  154 (184)
Q Consensus       124 ~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n  154 (184)
                      +.+.+..+ ++.+.. .+..+++|+.+.+.++
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            77777543 555543 3556677777776665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.47  E-value=0.0016  Score=50.70  Aligned_cols=122  Identities=13%  Similarity=0.179  Sum_probs=63.4

Q ss_pred             ccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccch-hhhcCCCCCCE
Q psy3785          48 SEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLV  125 (184)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~  125 (184)
                      +..+..++.+.+..+...--...+.....++.+......   ++ ..+..+.+|+.+.+..+ ++.++ ..|.+|..|+.
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            334455555555444221112223444444444443332   22 22334566666666543 44453 34666677777


Q ss_pred             EEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785         126 LNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus       126 l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      +++..+ ++.+.. .+..+.+|+.+.+..+ ++.++...|..+.+|+.+.+
T Consensus       325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            776533 555543 3556677777777655 66666666666666665444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.42  E-value=0.0017  Score=50.19  Aligned_cols=126  Identities=13%  Similarity=0.141  Sum_probs=91.8

Q ss_pred             cccCCCCccEEEecCCccccCc-hhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccch-hhhcCCCCC
Q psy3785          47 QSEPVLKLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSL  123 (184)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L  123 (184)
                      .+.....++.+.+..+ +..++ ..+..+..|+.+.+..+ ++.++ ..+..+.+++.+.+..+ ++.++ ..+.+|..|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3344556766666544 33333 44677788999988765 66665 44556788999988654 55564 468899999


Q ss_pred             CEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785         124 LVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG  176 (184)
Q Consensus       124 ~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~  176 (184)
                      +.+.+.++.++.++. .+..+.+|+.+.+..+ ++.+....|..+.+|+.+.+.
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            999999998988865 4778899999999654 777888888888888766653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.38  E-value=0.0015  Score=50.99  Aligned_cols=124  Identities=15%  Similarity=0.106  Sum_probs=87.6

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCceE
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYK  102 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~  102 (184)
                      .....++.+.+..+...  .....+..+..++.+......+..  ..+..+.+|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus       250 ~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          250 YGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             cccccceeEEcCCCcce--eeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            34556666666554432  234456667788888776655433  34677889999998765 66776 44557889999


Q ss_pred             EEccccccccch-hhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCC
Q psy3785         103 FNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHN  154 (184)
Q Consensus       103 L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n  154 (184)
                      +.+..+ ++.++ .+|.+|..|+.+.+..+ ++.+.. .+..+++|+.+.+..+
T Consensus       325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            999754 77774 57889999999999776 777754 4778899999988654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.22  E-value=0.0035  Score=48.81  Aligned_cols=106  Identities=15%  Similarity=0.252  Sum_probs=74.6

Q ss_pred             hhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcch-hhhcCCC
Q psy3785          69 DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPE-NIGYMKS  145 (184)
Q Consensus        69 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~  145 (184)
                      ..|..+..|+.+.+..+.. .++ ..+..+..|+.+.+. +.++.++ ..|.+|..|+.+.+..+ ++.+.. .+..+.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            3466777888888876543 343 445567888888886 3466664 46778888888888754 666654 3667888


Q ss_pred             CCEEeccCCCCCCCcHHHhhhhhcccccccccc
Q psy3785         146 LTHIDASHNTISYVPWKLFSKFHQNRSSRFGCA  178 (184)
Q Consensus       146 L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~  178 (184)
                      |+.+.+-.+ ++.+....|..+.+|+.+.+..+
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            888888544 77788888888888877666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.07  E-value=0.00087  Score=44.18  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=13.7

Q ss_pred             CCEEEcccCccccchhh-hcCCCCceEEEcccccc
Q psy3785          77 LNELALNNNQLEMINEA-VYDLPHLYKFNVSNNMI  110 (184)
Q Consensus        77 L~~L~l~~n~l~~~~~~-~~~l~~l~~L~l~~n~~  110 (184)
                      ++.|+|++|+++.+|.. +..+++|+.+++.+|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44444444444444322 22334444444444433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.76  E-value=0.0023  Score=42.10  Aligned_cols=55  Identities=11%  Similarity=0.123  Sum_probs=41.6

Q ss_pred             CEEEcccCccc--cchhhhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCC
Q psy3785          78 NELALNNNQLE--MINEAVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIE  134 (184)
Q Consensus        78 ~~L~l~~n~l~--~~~~~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  134 (184)
                      ..++.+++.++  .+|..+.  .++++|++++|.++.++. .+..++.|+.++|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777788877  7775432  368888999998888864 5677888888888888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.8 bits (126), Expect = 5e-10
 Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 55  KVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKIS 114
           +VL+L + +L  L   +  L  +  L L++N+L  +  A+  L  L     S+N +  + 
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 115 DNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYVP 160
                   L  L + NN+++     + +     L  ++   N++    
Sbjct: 60  GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 3e-08
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 71  IRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISN 130
                +L EL ++NN+L  +       P L +   S N +A++ +   NL     L++  
Sbjct: 280 CDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPELPQNLKQ---LHVEY 333

Query: 131 NKIESLPENIGYMKSL 146
           N +   P+    ++ L
Sbjct: 334 NPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
            L+ LN+  N L  LP     L  L     + N L  + E      +L + +V  N + +
Sbjct: 285 SLEELNVSNNKLIELPALPPRLERLI---ASFNHLAEVPE---LPQNLKQLHVEYNPLRE 338

Query: 113 ISDNIGNLTSL 123
             D   ++  L
Sbjct: 339 FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 3e-07
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 83  NNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGY 142
            N     I       P L + NVSNN + ++      L     L  S N +  +PE    
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLAEVPELPQ- 324

Query: 143 MKSLTHIDASHNTISYVP 160
             +L  +   +N +   P
Sbjct: 325 --NLKQLHVEYNPLREFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           +   L L    L  LP+   HL +L     + N L  + E       L    V NN +  
Sbjct: 39  QAHELELNNLGLSSLPELPPHLESLV---ASCNSLTELPEL---PQSLKSLLVDNNNL-- 90

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQN 170
               + +L  LL     +N        +     L  ID  +N++  +P    S     
Sbjct: 91  --KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLY 101
           +L+ L   +N+L  +P+  ++L  L+   +  N L    +    +  L 
Sbjct: 305 RLERLIASFNHLAEVPELPQNLKQLH---VEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 99  HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
             ++  ++N  ++ + +   +L SL     S N +  LPE    +KSL   + +   +S 
Sbjct: 39  QAHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 159 VPWKLFSKFHQNRSSRFGCALIMNDF 184
           +P  L      N        L  + F
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSF 121

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 8e-04
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 99  HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY 158
                   N    +I        SL  LN+SNNK+  LP        L  + AS N ++ 
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAE 318

Query: 159 VP 160
           VP
Sbjct: 319 VP 320

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 75  TNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIE 134
              +EL LNN  L  + E     PHL     S N + ++ +   +L S   L + NN ++
Sbjct: 38  RQAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQSLKS---LLVDNNNLK 91

Query: 135 SLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           +L +       L ++  S+N +  +P    S F +
Sbjct: 92  ALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLK 123

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 3e-08
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA 111
           L          N       I +L NL  L L  N +  I   V  L  L +   +NN ++
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVS 342

Query: 112 KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
            +S ++ NLT++  L+  +N+I  L   +  +  +T +  +  
Sbjct: 343 DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 7e-08
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAK 112
           KL  L L  N +  +          N     N         + +L +L    +  N I+ 
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISD 321

Query: 113 ISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP 160
           IS  + +LT L  L  +NNK+  +   +  + ++  + A HN IS + 
Sbjct: 322 IS-PVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLT 367

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 96  DLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNT 155
           DL  +         I  I D +  L +L  +N SNN++  +   +  +  L  I  ++N 
Sbjct: 42  DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ 99

Query: 156 ISYVPW 161
           I+ +  
Sbjct: 100 IADITP 105

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYD-LPHLYKFNVSNNMIAK 112
           L+V+      L+ +P ++    +   L L NN++  I +  +  L +L+   + NN I+K
Sbjct: 12  LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 113 ISDN-IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171
           IS      L  L  L +S N+++ LPE +        +    N I+ V   +F+  +Q  
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMI 127

Query: 172 S 172
            
Sbjct: 128 V 128

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLP----HLYKFNVSNN 108
           KL+ L L  N LK LP+++     L EL ++ N++  + ++V++       +        
Sbjct: 80  KLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 109 MIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFH 168
                +     +  L  + I++  I ++P+ +    SLT +    N I+ V        +
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 195

Query: 169 Q 169
            
Sbjct: 196 N 196

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 9/117 (7%)

Query: 53  KLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQL-EMINEAVYDLPHLYKFNVSNNMI 110
            L  L+L  N +       ++ L NL +L L+ N +  + N ++ + PHL + +++NN +
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 111 AKISDNIGNLTSLLVLNISNNKIESLPEN-------IGYMKSLTHIDASHNTISYVP 160
            K+   + +   + V+ + NN I ++  N            S + +    N + Y  
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 83  NNNQLEMINEAVYDLPHLYKFNVS--NNMIAKISDNIGNLTSLLVLNISNNKIESLPENI 140
             N+L+ +   +       +      NN+    +  +  L +L  L +  N + ++P+  
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 141 GYMKSLTHIDASHN 154
                L       N
Sbjct: 192 FGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 117 IGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQ 169
           +  + S L +N     + +LP ++   K  T +  S N +          + +
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTR 56

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 58  NLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIA---KIS 114
            L+   ++ L   +    + ++ AL+   L    + +         N  ++M A    I 
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIE 61

Query: 115 DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRS 172
           +NI  L SL + N    +++ +   +    +L  ++ S N +         K  +   
Sbjct: 62  ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI 113
                L    L+  PD +        L   ++    +     ++P L   N+SNN + ++
Sbjct: 22  GSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 80

Query: 114 SD---NIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISYVPWKLFS 165
            D    +    +L +LN+S N+++S  E +      L  +    N++S       +
Sbjct: 81  DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW 161
           +  +I + +    N      L++   KI  +      +     ID S N I  +  
Sbjct: 4   TAELIEQAAQYT-NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 43  SNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK 102
              +Q    ++ + L+L+   +  + +    L   + +  ++N++  + +    L  L  
Sbjct: 9   EQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKT 67

Query: 103 FNVSNNMIA-KISDNIGNLTSLLVLNISNNKIESLP--ENIGYMKSLTHIDASHNTISYV 159
             V+NN I          L  L  L ++NN +  L   + +  +KSLT++    N ++  
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 160 PWKLFSKFHQ 169
                   ++
Sbjct: 128 KHYRLYVIYK 137

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 2/110 (1%)

Query: 63  NLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTS 122
            L     +  +     EL L   ++ +I      L      + S+N I K+ D    L  
Sbjct: 6   ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRR 64

Query: 123 LLVLNISNNKIES-LPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNR 171
           L  L ++NN+I          +  LT +  ++N++  +         ++ 
Sbjct: 65  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 114

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 106 SNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
           +N +   +   +  L  L  LN+S N +       G ++       ++N
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 53  KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL 87
            L  LN+ +NNL G   +  +L   +  A  NN+ 
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 58  NLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN 108
           +L+ N + G LP  +  L  L+ L ++ N L        +L        +NN
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 9e-05
 Identities = 15/138 (10%), Positives = 37/138 (26%), Gaps = 7/138 (5%)

Query: 52  LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQL-----EMINEAVYDLPHLYKFNVS 106
             LK+  +   + K +   +    ++ E+ L+ N +       ++E +     L     S
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSK 166
           +    ++ D I     LL+  +       L        +                     
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCP--KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 167 FHQNRSSRFGCALIMNDF 184
            + + +     A      
Sbjct: 126 LYLHNNGLGPQAGAKIAR 143

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 3/104 (2%)

Query: 54  LKVLNLQYNNLKGLPDEIRHLTNLNELAL-NNNQLEMINEAVY-DLPHLYKFNVSNNMIA 111
              L    +        +    NL EL + N   L+ +       L  L    +  + + 
Sbjct: 10  SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 112 -KISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHN 154
               D       L  LN+S N +ESL        SL  +  S N
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 53  KLKVLNLQYNNLKGLP-DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMI 110
            L  L L  N +  +P    R L +L+ L L+ N++  ++  A  DL  L    +  N +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 111 AKI-SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTIS 157
           + + ++ +  L +L  L +++N              L     S + + 
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 9e-04
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 20/84 (23%)

Query: 52  LKLKVLNLQYNNL--KGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM 109
           L ++ L++Q   L      + +  L     + L++  L                  +   
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL------------------TEAR 43

Query: 110 IAKISDNIGNLTSLLVLNISNNKI 133
              IS  +    +L  LN+ +N++
Sbjct: 44  CKDISSALRVNPALAELNLRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 8/82 (9%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 100 LYKFNVSNNMI--AKISDNIGNLTSLLVLNISNNKI-----ESLPENIGYMKSLTHIDAS 152
           +   ++    +  A+ ++ +  L    V+ + +  +     + +   +    +L  ++  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 153 HNTISYVPWKLFSKFHQNRSSR 174
            N +  V      +  Q  S +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCK 85

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 99  HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASH 153
            L      +N I+ IS  + +L +L+ +++ NN+I  +   +    +L  +  ++
Sbjct: 174 KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 97  LPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTI 156
           L +  K     + +        +L  +  L+     + ++ E + Y+ +L  ++   N I
Sbjct: 18  LANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQI 75

Query: 157 SYVPW 161
           + +  
Sbjct: 76  TDLAP 80

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 53  KLKVLNLQYNNLKGLPDEI-RHLTNLNELALNNNQ 86
              +L++    +  LP     +L  L   +  N +
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.99
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.68
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.4
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.75

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-18  Score=127.88  Aligned_cols=150  Identities=19%  Similarity=0.219  Sum_probs=95.7

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccch-hhhcCCCCce
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLY  101 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~  101 (184)
                      +..+++|+.|++++|.+.  .++ .++.+++|+.|++++|+++..+..+..+++|+.|+++++.+..++ ..+..+.+++
T Consensus        51 f~~l~~L~~L~L~~N~l~--~l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~  127 (266)
T d1p9ag_          51 LMPYTRLTQLNLDRAELT--KLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (266)
T ss_dssp             GTTCTTCCEEECTTSCCC--EEE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             hhcccccccccccccccc--ccc-cccccccccccccccccccccccccccccccccccccccccceeeccccccccccc
Confidence            445555555555555543  222 223455555555555555555555555555666666655555443 3333556666


Q ss_pred             EEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccc
Q psy3785         102 KFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFG  176 (184)
Q Consensus       102 ~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~  176 (184)
                      .+.+++|.++.++ ..+..++.++.+++++|.++.++.. +..+++|+.++|++|.|+.+|..++. ...++.+.++
T Consensus       128 ~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~-~~~L~~L~L~  203 (266)
T d1p9ag_         128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLH  203 (266)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEECC
T ss_pred             cccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCC-CCCCCEEEec
Confidence            6666666666664 3456778889999999999877644 67788999999999999999887664 5666666665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.8e-18  Score=124.90  Aligned_cols=150  Identities=21%  Similarity=0.236  Sum_probs=70.7

Q ss_pred             cccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccc
Q psy3785          28 LLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSN  107 (184)
Q Consensus        28 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~  107 (184)
                      .++.|++++|.+.. ..+..+..+++|++|++++|.++.+|. +..+++|++|++++|+++..+..+..+++|+.+++++
T Consensus        32 ~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          32 DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCC-cCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            44555555554442 122334445555555555555544432 2344455555555555544444444445555555555


Q ss_pred             cccccch-hhhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccc
Q psy3785         108 NMIAKIS-DNIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCAL  179 (184)
Q Consensus       108 n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~  179 (184)
                      +.+..++ ..+..+..+..+++.+|.++.++.. +..++.++.+++++|.++.++...+..+..|+.+.++.|.
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCC
Confidence            5444332 2334444555555555555544332 2334445555555555555444444444555544444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=3.6e-17  Score=107.32  Aligned_cols=114  Identities=21%  Similarity=0.291  Sum_probs=59.0

Q ss_pred             EEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCC
Q psy3785          56 VLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIES  135 (184)
Q Consensus        56 ~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~  135 (184)
                      +|++++|.++.++. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.++ .+..++.|+.+++++|.++.
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCC
Confidence            34555555554432 44455555555555555555544445555555555555555443 25555556666666665554


Q ss_pred             cch--hhhcCCCCCEEeccCCCCCC---CcHHHhhhhhccc
Q psy3785         136 LPE--NIGYMKSLTHIDASHNTISY---VPWKLFSKFHQNR  171 (184)
Q Consensus       136 l~~--~~~~~~~L~~l~L~~n~l~~---~~~~~~~~~~~l~  171 (184)
                      ++.  .+..+++|+.+++++|+++.   .+..+...++.++
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~  120 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  120 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcc
Confidence            432  34555666666666665543   2334444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.70  E-value=4.6e-17  Score=122.47  Aligned_cols=158  Identities=21%  Similarity=0.293  Sum_probs=89.9

Q ss_pred             ccccCCCcCccccEEEeec-CCCCCCCCcccccCCCCccEEEecCCcccc-------------------------Cchhh
Q psy3785          18 SLVGSASASALLYTYEISS-DTGSGESNMSQSEPVLKLKVLNLQYNNLKG-------------------------LPDEI   71 (184)
Q Consensus        18 ~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------lp~~~   71 (184)
                      .+++.++.++.|++|++++ |.+.+ .+|+.++++++|++|++++|.+.+                         +|..+
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l  145 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             CCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence            3555666666666666665 44444 456666666666666666665443                         23444


Q ss_pred             hCCCCCCEEEcccCccc-cchhhhcCCCC------------------------------------------------ceE
Q psy3785          72 RHLTNLNELALNNNQLE-MINEAVYDLPH------------------------------------------------LYK  102 (184)
Q Consensus        72 ~~l~~L~~L~l~~n~l~-~~~~~~~~l~~------------------------------------------------l~~  102 (184)
                      .+++.++.+++++|.++ .+|..+..+..                                                ++.
T Consensus       146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~  225 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             ccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55555555555555544 33333332222                                                223


Q ss_pred             EEccccccccchhhhcCCCCCCEEEccCCCCC-CcchhhhcCCCCCEEeccCCCCCC-CcHHHhhhhhcccccccccc
Q psy3785         103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIE-SLPENIGYMKSLTHIDASHNTISY-VPWKLFSKFHQNRSSRFGCA  178 (184)
Q Consensus       103 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~~~~~~~~  178 (184)
                      ++++++.++..++.++.++.++.+++++|.++ .+|..++.+++|+.++|++|++++ +|.  +..+..++.+.+..|
T Consensus       226 l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANN  301 (313)
T ss_dssp             EECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSS
T ss_pred             cccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCCC
Confidence            33333332222333455667777777777777 677777777777888888877775 664  234556666655544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.6e-16  Score=110.38  Aligned_cols=143  Identities=22%  Similarity=0.281  Sum_probs=77.5

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF  103 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L  103 (184)
                      ..+++|+.|++++|.+.+  ++ .+..+++|++|++++|+++++| .+..+++|+.+++.+|.+..++ .+..++.++.+
T Consensus        65 ~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l  139 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESL  139 (210)
T ss_dssp             GGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEE
T ss_pred             hhCCCCCEEeCCCccccC--cc-ccccCccccccccccccccccc-cccccccccccccccccccccc-ccccccccccc
Confidence            345555555555555442  22 2344555555555555555544 2444555555555555544432 23344555555


Q ss_pred             EccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccc
Q psy3785         104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus       104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      .+++|.++..+ .+..++.|+.+++++|.+++++. +..+++|+.+++++|.++.++.  +..+++|+.+++
T Consensus       140 ~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~L  207 (210)
T d1h6ta2         140 YLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL  207 (210)
T ss_dssp             ECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEE
T ss_pred             ccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChh--hcCCCCCCEEEc
Confidence            55555554332 24456667777777776666543 5566677777777777766652  344555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=9.3e-16  Score=108.30  Aligned_cols=131  Identities=27%  Similarity=0.378  Sum_probs=81.9

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK  102 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  102 (184)
                      +..+++|++|++++|.+.+  ++ .+..+++|+.|++++|.+..++. +..+++|+.++++++....++ .+..+++++.
T Consensus        58 l~~l~nL~~L~Ls~N~l~~--~~-~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~  132 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTD--IT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNR  132 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             cccCCCcCcCccccccccC--cc-cccCCcccccccccccccccccc-ccccccccccccccccccccc-ccchhhhhHH
Confidence            4456666666666666553  22 25566666666666666666542 556666666666666655442 2445666777


Q ss_pred             EEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCc
Q psy3785         103 FNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP  160 (184)
Q Consensus       103 L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~  160 (184)
                      +++++|.+..++ .+..++.++.+++.+|.++.++. ++.+++|+.+++++|+++.++
T Consensus       133 L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         133 LELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             EECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             hhhhhhhhcccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc
Confidence            777777666553 35666677777777776666643 566677777777777776664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.7e-16  Score=113.96  Aligned_cols=164  Identities=20%  Similarity=0.228  Sum_probs=124.5

Q ss_pred             ccccccc-CCCcCccccEEEeecCCCCC------------------------CCCcccccCCCCccEEEecCCccccCc-
Q psy3785          15 RLVSLVG-SASASALLYTYEISSDTGSG------------------------ESNMSQSEPVLKLKVLNLQYNNLKGLP-   68 (184)
Q Consensus        15 ~~~~~~~-~~~~~~~l~~l~l~~~~~~~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~lp-   68 (184)
                      .+..++. .+..+++|+.++++++.+..                        ...+..+.++++|++|++.+|.+..++ 
T Consensus        43 ~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~  122 (284)
T d1ozna_          43 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP  122 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccc
Confidence            4455553 46778888888887776321                        112556777788888999888887764 


Q ss_pred             hhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCc-chhhhcCCC
Q psy3785          69 DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESL-PENIGYMKS  145 (184)
Q Consensus        69 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~  145 (184)
                      ..+.....|+.+++++|.++.+| ..+..+.+++.|++++|.++.++ ..+.+++.|+.+++++|.++.+ |..+..+++
T Consensus       123 ~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence            44666778889999999888876 44557788899999998888774 5677888899999999988865 566788888


Q ss_pred             CCEEeccCCCCCCCcHHHhhhhhcccccccccc
Q psy3785         146 LTHIDASHNTISYVPWKLFSKFHQNRSSRFGCA  178 (184)
Q Consensus       146 L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~  178 (184)
                      ++.+++++|.+.+++...+.....++.+.++.|
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccCEEEecCC
Confidence            999999999998888888888888887776543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.2e-16  Score=103.43  Aligned_cols=116  Identities=23%  Similarity=0.332  Sum_probs=99.5

Q ss_pred             cEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccc
Q psy3785          30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNM  109 (184)
Q Consensus        30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~  109 (184)
                      |+|++++|++.  .++ .+..+++|++|++++|.++++|+.+..+++|++|++++|.++.+|. +..+++++.+++++|+
T Consensus         1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCc
Confidence            67999999997  444 5788999999999999999999889999999999999999998864 7889999999999999


Q ss_pred             cccch--hhhcCCCCCCEEEccCCCCCCcc---h-hhhcCCCCCEE
Q psy3785         110 IAKIS--DNIGNLTSLLVLNISNNKIESLP---E-NIGYMKSLTHI  149 (184)
Q Consensus       110 ~~~~~--~~~~~~~~L~~l~l~~n~l~~l~---~-~~~~~~~L~~l  149 (184)
                      ++.++  ..+..++.|+.+++++|.++..+   . ....+|+++.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99775  46889999999999999987443   2 24557777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.3e-17  Score=110.93  Aligned_cols=125  Identities=19%  Similarity=0.253  Sum_probs=70.9

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhh-cCCCCce
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAV-YDLPHLY  101 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~l~  101 (184)
                      +.....++.|++++|.+.  .++.....+++|+.|++++|.++.++ .+..+++|++|++++|.++.++..+ ..+++++
T Consensus        14 ~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            344555666666666655  33444445566666666666666553 3555666666666666666554332 3456666


Q ss_pred             EEEccccccccch--hhhcCCCCCCEEEccCCCCCCcch----hhhcCCCCCEEe
Q psy3785         102 KFNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPE----NIGYMKSLTHID  150 (184)
Q Consensus       102 ~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~----~~~~~~~L~~l~  150 (184)
                      +|++++|.++.++  ..+..++.|+.+++.+|.++..+.    .+..+|+|+.+|
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6666666665443  245556666666666666654442    245556666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=8.8e-16  Score=114.88  Aligned_cols=65  Identities=25%  Similarity=0.317  Sum_probs=34.6

Q ss_pred             CceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHH
Q psy3785          99 HLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKL  163 (184)
Q Consensus        99 ~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~  163 (184)
                      .++.|++++|.++.+ +..+.+++.|+.|++++|+++++|..+..+++|+.+++++|+|+.++...
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             cccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhh
Confidence            333444444444333 23344555666666666666666555555666666666666666655433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.8e-16  Score=107.64  Aligned_cols=127  Identities=20%  Similarity=0.244  Sum_probs=108.2

Q ss_pred             cccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhh-hcCCCCCCE
Q psy3785          47 QSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDN-IGNLTSLLV  125 (184)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~-~~~~~~L~~  125 (184)
                      .+.++..+++|++++|+++.++..+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+++. +..++.++.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            356778899999999999999876778999999999999999884 477899999999999999988654 567999999


Q ss_pred             EEccCCCCCCcch--hhhcCCCCCEEeccCCCCCCCcH---HHhhhhhcccccc
Q psy3785         126 LNISNNKIESLPE--NIGYMKSLTHIDASHNTISYVPW---KLFSKFHQNRSSR  174 (184)
Q Consensus       126 l~l~~n~l~~l~~--~~~~~~~L~~l~L~~n~l~~~~~---~~~~~~~~l~~~~  174 (184)
                      +++++|.++.++.  .+..+++|+.+++++|+++..|.   .++..++.|+.+.
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999998764  47889999999999999988774   4556667776543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.3e-15  Score=106.27  Aligned_cols=148  Identities=22%  Similarity=0.288  Sum_probs=127.5

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEE
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKF  103 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L  103 (184)
                      ..+++++.|+++++.+..  + +++..+++|++|++++|.+++++. +..+++|+.|++++|.+..++. +..++.|+.+
T Consensus        37 ~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-cccccccccc
Confidence            457899999999999874  3 457889999999999999999865 8899999999999999988764 6789999999


Q ss_pred             EccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhcccccccccccc
Q psy3785         104 NVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       104 ~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                      +++++....++ .+..++.|+.+++++|.++.++. +..++.++.+++++|.++.++.  +..++.|+.+.++.+.+
T Consensus       112 ~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         112 TLFNNQITDID-PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV  184 (199)
T ss_dssp             ECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc-ccchhhhhHHhhhhhhhhccccc-ccccccccccccccccccCCcc--ccCCCCCCEEECCCCCC
Confidence            99999887663 47789999999999999987764 7889999999999999999864  56778899888888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=1.1e-16  Score=112.62  Aligned_cols=107  Identities=27%  Similarity=0.325  Sum_probs=56.0

Q ss_pred             CCccEEEecCCcccc-C-chhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEccccccccch-hhhcCCCCCCEEE
Q psy3785          52 LKLKVLNLQYNNLKG-L-PDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLN  127 (184)
Q Consensus        52 ~~L~~L~l~~n~l~~-l-p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~  127 (184)
                      +++++|++++|.++. + +..|..+++|+.|++++|.+..++ ..+..+++|++|++++|+++.++ ..|.+++.|+.|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            345555555555543 2 223455555555555555555443 33334555555555555555553 2345555555555


Q ss_pred             ccCCCCCCcchh-hhcCCCCCEEeccCCCCCC
Q psy3785         128 ISNNKIESLPEN-IGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       128 l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~  158 (184)
                      +++|.++.++.. +..+++|+++++++|++..
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCccccccCHHHhcCCccccccccccccccc
Confidence            555555555432 4445555555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.65  E-value=4.2e-16  Score=117.13  Aligned_cols=155  Identities=19%  Similarity=0.235  Sum_probs=105.0

Q ss_pred             cCccccEEEeecCCCCCC-CCcccccCCCCccEEEecC-Ccccc-CchhhhCCCCCCEEEcccCccccch-hhhcCCCCc
Q psy3785          25 ASALLYTYEISSDTGSGE-SNMSQSEPVLKLKVLNLQY-NNLKG-LPDEIRHLTNLNELALNNNQLEMIN-EAVYDLPHL  100 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~-n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l  100 (184)
                      .-.+++.|+++++...+. .+|+.++++++|++|++++ |.+++ +|..+.++++|++|++++|++..++ ..+..+.+|
T Consensus        48 ~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             CcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            344799999999998874 4789999999999999986 78885 8999999999999999999887432 333344444


Q ss_pred             eEEEccccccc-cchhhhcCCCCCCEEEcc--------------------------------------------------
Q psy3785         101 YKFNVSNNMIA-KISDNIGNLTSLLVLNIS--------------------------------------------------  129 (184)
Q Consensus       101 ~~L~l~~n~~~-~~~~~~~~~~~L~~l~l~--------------------------------------------------  129 (184)
                      +.+++++|.+. .+|..+..++.++.++++                                                  
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~  207 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44444444332 223333333333333332                                                  


Q ss_pred             ----------------------CCCCCCcchhhhcCCCCCEEeccCCCCCC-CcHHHhhhhhcccccccccccc
Q psy3785         130 ----------------------NNKIESLPENIGYMKSLTHIDASHNTISY-VPWKLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       130 ----------------------~n~l~~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~l~~~~~~~~~~  180 (184)
                                            +|.+...+..++.++.++.+++++|++++ +|.++ ..++.|+.+.++.|.+
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l-~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHH-hCCCCCCEEECcCCcc
Confidence                                  22222223334557788899999999985 88765 4567888888877654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.6e-15  Score=106.82  Aligned_cols=148  Identities=19%  Similarity=0.226  Sum_probs=126.7

Q ss_pred             cCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEE
Q psy3785          25 ASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFN  104 (184)
Q Consensus        25 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~  104 (184)
                      .+..++.++++++.+..   ..++..+++|++|++++|.+++++. +..+++|++|++++|+++.++ .+..+++|+.++
T Consensus        44 ~L~~L~~L~l~~~~i~~---l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCC---chhHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-cccccccccccc
Confidence            46789999999999874   2357889999999999999999864 678999999999999999887 477899999999


Q ss_pred             ccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHHHhhhhhccccccccccccc
Q psy3785         105 VSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       105 l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      +++|.+..++ .+.+++.++.+++++|.++..+ ....+++|+.+++++|.+++++.  +..++.++.+.++++.+.
T Consensus       119 l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCC
Confidence            9999988764 4788899999999999998665 36778999999999999999864  567788998888888763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.7e-15  Score=106.40  Aligned_cols=147  Identities=19%  Similarity=0.225  Sum_probs=115.3

Q ss_pred             ccccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccC-chhhhCCCCCCEEEcccCccccchh
Q psy3785          14 ARLVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGL-PDEIRHLTNLNELALNNNQLEMINE   92 (184)
Q Consensus        14 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~   92 (184)
                      .++.++|..+  .+.+++|++++|.+.....+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|+++.+|.
T Consensus        18 ~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~   95 (192)
T d1w8aa_          18 RGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN   95 (192)
T ss_dssp             SCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS
T ss_pred             CCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCH
Confidence            4566777765  368999999999997645567778899999999999999986 4568889999999999999998874


Q ss_pred             -hhcCCCCceEEEccccccccch-hhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC-CcHH
Q psy3785          93 -AVYDLPHLYKFNVSNNMIAKIS-DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY-VPWK  162 (184)
Q Consensus        93 -~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~-~~~~  162 (184)
                       .|..+++|++|++++|+++.++ ..|..++.|+.+++++|.+........-...++...+..+.+.. .|..
T Consensus        96 ~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~  168 (192)
T d1w8aa_          96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred             HHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChh
Confidence             5668999999999999999885 56889999999999999988443221111224445566676665 5543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-15  Score=111.26  Aligned_cols=138  Identities=22%  Similarity=0.294  Sum_probs=120.4

Q ss_pred             ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCch-hhhCCCCCCEEEcccCccccch-hhhcCC
Q psy3785          20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPD-EIRHLTNLNELALNNNQLEMIN-EAVYDL   97 (184)
Q Consensus        20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~l   97 (184)
                      +..++.+++|+.+++++|.... ..+..+....+|+.+++.+|.++.+|. .+..+++++.|++++|.++.++ ..+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l  176 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             chhhcccccCCEEecCCccccc-ccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc
Confidence            4557788999999999998764 446667778999999999999999864 4778899999999999999886 556689


Q ss_pred             CCceEEEccccccccc-hhhhcCCCCCCEEEccCCCCCCcch-hhhcCCCCCEEeccCCCCCC
Q psy3785          98 PHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNISNNKIESLPE-NIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        98 ~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~L~~n~l~~  158 (184)
                      ++|+.+.+++|+++.+ |..+..++.++.+++++|.+..++. .++.+++|+.+++++|++.+
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            9999999999999876 6789999999999999999998764 57889999999999999987

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=1.7e-14  Score=103.52  Aligned_cols=146  Identities=19%  Similarity=0.271  Sum_probs=88.1

Q ss_pred             CCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchh---------
Q psy3785          22 SASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE---------   92 (184)
Q Consensus        22 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~---------   92 (184)
                      .+..+++|+.+++++|.+.+  + ..+..+++++.+++.+|.++.++ .+..+++|+.+.++++....++.         
T Consensus        58 ~l~~l~~L~~L~ls~n~i~~--~-~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  133 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQITD--L-APLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV  133 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCCC--C-GGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCE
T ss_pred             hHhcCCCCcEeecCCceeec--c-ccccccccccccccccccccccc-cccccccccccccccccccccchhccccchhh
Confidence            45677778888887777664  2 23666777777777777777654 35666777777777665443211         


Q ss_pred             ------------hhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCc
Q psy3785          93 ------------AVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVP  160 (184)
Q Consensus        93 ------------~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~  160 (184)
                                  .+..+++++.+.+++|.++..+. +.+++.|+.+++++|.++.++. +..+++|+.+++++|++++++
T Consensus       134 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             hhchhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCc
Confidence                        12234455666666665554432 5566666666666666666543 455666666666666666654


Q ss_pred             HHHhhhhhccccccc
Q psy3785         161 WKLFSKFHQNRSSRF  175 (184)
Q Consensus       161 ~~~~~~~~~l~~~~~  175 (184)
                      .  +..++.|+.+.+
T Consensus       212 ~--l~~l~~L~~L~l  224 (227)
T d1h6ua2         212 P--LANTSNLFIVTL  224 (227)
T ss_dssp             G--GTTCTTCCEEEE
T ss_pred             c--cccCCCCCEEEe
Confidence            3  344455554443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=3.5e-14  Score=108.60  Aligned_cols=146  Identities=23%  Similarity=0.311  Sum_probs=94.0

Q ss_pred             CcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchh-----------
Q psy3785          24 SASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINE-----------   92 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~-----------   92 (184)
                      ..++.|+.+++++|.+..   .+.+..+++++.+++.+|.+++++. +..+++|++++++++.++.++.           
T Consensus       216 ~~~~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~  291 (384)
T d2omza2         216 GILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLE  291 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccCCCCEEECCCCCCCC---cchhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCcccccccccccc
Confidence            455667777777776553   2345566677777777776666543 5556666666666666554321           


Q ss_pred             ----------hhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcHH
Q psy3785          93 ----------AVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPWK  162 (184)
Q Consensus        93 ----------~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~~  162 (184)
                                .+..+++++.+++++|+++.+++ +..+++|+.+++++|.++.++ .+..+++|+.+++++|+++++++ 
T Consensus       292 ~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         292 LNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             CCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             ccccccccccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-
Confidence                      23345667777777777766643 667777888888888777765 36677778888888887777654 


Q ss_pred             Hhhhhhccccccccc
Q psy3785         163 LFSKFHQNRSSRFGC  177 (184)
Q Consensus       163 ~~~~~~~l~~~~~~~  177 (184)
                       +..++.|+.+.++.
T Consensus       369 -l~~l~~L~~L~L~~  382 (384)
T d2omza2         369 -LANLTRITQLGLND  382 (384)
T ss_dssp             -GTTCTTCSEEECCC
T ss_pred             -hccCCCCCEeeCCC
Confidence             44556666666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=3.9e-14  Score=105.73  Aligned_cols=146  Identities=19%  Similarity=0.265  Sum_probs=120.4

Q ss_pred             cCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccCccccch-hhhcCCC
Q psy3785          21 GSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNNQLEMIN-EAVYDLP   98 (184)
Q Consensus        21 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~   98 (184)
                      ..+..+++|+.+++++|.+.  .++..+  +++++.|++.+|.... .+..+..++.+++|++++|.++.++ ..+..++
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~--~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~  219 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNIT--TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP  219 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCC--SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred             cccccccccCccccccCCcc--ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc
Confidence            44567789999999999876  445442  6789999999999887 4677888999999999999999775 5566799


Q ss_pred             CceEEEccccccccchhhhcCCCCCCEEEccCCCCCCcchh-------hhcCCCCCEEeccCCCCCC--CcHHHhhhhhc
Q psy3785          99 HLYKFNVSNNMIAKISDNIGNLTSLLVLNISNNKIESLPEN-------IGYMKSLTHIDASHNTISY--VPWKLFSKFHQ  169 (184)
Q Consensus        99 ~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~~-------~~~~~~L~~l~L~~n~l~~--~~~~~~~~~~~  169 (184)
                      +|++|++++|.++.+|+.+.+++.|+.+++++|+++.++..       ....++|+.+++++|++..  ++...|.....
T Consensus       220 ~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~  299 (305)
T d1xkua_         220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  299 (305)
T ss_dssp             TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             cceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccccc
Confidence            99999999999999998999999999999999999977543       3456789999999999874  77766665444


Q ss_pred             c
Q psy3785         170 N  170 (184)
Q Consensus       170 l  170 (184)
                      .
T Consensus       300 ~  300 (305)
T d1xkua_         300 R  300 (305)
T ss_dssp             G
T ss_pred             C
Confidence            3

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=2.4e-13  Score=97.38  Aligned_cols=150  Identities=20%  Similarity=0.285  Sum_probs=122.6

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceE
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYK  102 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~  102 (184)
                      .+.+.+|+.+++.+|.+.  .+ +.+..+++|+.|++++|.+.+++. +.++++++++++++|.++.++ .+..+++|+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~--~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVT--TI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHHTCCEEECTTSCCC--CC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEECCCCCCC--cc-hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-cccccccccc
Confidence            356789999999999987  44 468899999999999999998753 788999999999999998775 4667899999


Q ss_pred             EEccccccccch---------------------hhhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCCCcH
Q psy3785         103 FNVSNNMIAKIS---------------------DNIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISYVPW  161 (184)
Q Consensus       103 L~l~~n~~~~~~---------------------~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~  161 (184)
                      +.++++....++                     ..+..++.++.+++++|.+...+. ++.+++|+.+++++|.+++++.
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~  190 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP  190 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             cccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCccCCChh
Confidence            999988765221                     124567788999999998876654 6789999999999999999865


Q ss_pred             HHhhhhhcccccccccccc
Q psy3785         162 KLFSKFHQNRSSRFGCALI  180 (184)
Q Consensus       162 ~~~~~~~~l~~~~~~~~~~  180 (184)
                        +..+++|+.+.++++.+
T Consensus       191 --l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         191 --LASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             --GGGCTTCCEEECTTSCC
T ss_pred             --hcCCCCCCEEECcCCcC
Confidence              56678899888888765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=3.4e-13  Score=102.97  Aligned_cols=154  Identities=23%  Similarity=0.270  Sum_probs=124.4

Q ss_pred             ccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCC
Q psy3785          20 VGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPH   99 (184)
Q Consensus        20 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~   99 (184)
                      ......+++++.++++++.+..  ++ .....++|+++++.+|.+++++ .+..++.++.+++.+|.++.++. +..+++
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~--~~-~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~  264 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISD--IT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTK  264 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCC--CG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred             ccccccccccceeeccCCccCC--CC-cccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-cccccc
Confidence            3455678899999999998875  22 2456789999999999999875 57788999999999999997754 667889


Q ss_pred             ceEEEccccccccchh---------------------hhcCCCCCCEEEccCCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785         100 LYKFNVSNNMIAKISD---------------------NIGNLTSLLVLNISNNKIESLPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       100 l~~L~l~~n~~~~~~~---------------------~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      |++++++++.++.+++                     .+..++.++.+++++|++++++. +..+++|+.+++++|.++.
T Consensus       265 L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred             CCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCC
Confidence            9999999988764422                     24556788888898898887764 7889999999999999999


Q ss_pred             CcHHHhhhhhccccccccccccc
Q psy3785         159 VPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       159 ~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      ++.  +..++.|+.+.+++|.+.
T Consensus       344 l~~--l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         344 VSS--LANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCC
T ss_pred             Chh--HcCCCCCCEEECCCCcCC
Confidence            873  566889999999887653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.47  E-value=9.3e-16  Score=108.32  Aligned_cols=128  Identities=25%  Similarity=0.250  Sum_probs=76.9

Q ss_pred             ccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcccc
Q psy3785          29 LYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNN  108 (184)
Q Consensus        29 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n  108 (184)
                      .+.++++........++..+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|.....+++|+.|++++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc
Confidence            3444554443333344556666666777777777666664 356666677777777766666543333445666777776


Q ss_pred             ccccchhhhcCCCCCCEEEccCCCCCCcch--hhhcCCCCCEEeccCCCCCC
Q psy3785         109 MIAKISDNIGNLTSLLVLNISNNKIESLPE--NIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       109 ~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~L~~n~l~~  158 (184)
                      .++.++ .+..++.|+.+++++|.++.++.  .+..+++|+.+++++|++..
T Consensus       104 ~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         104 QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccc-cccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            666553 35555666777777776665542  35666667777777766544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.3e-13  Score=90.42  Aligned_cols=106  Identities=21%  Similarity=0.175  Sum_probs=77.5

Q ss_pred             CccEEEecCCccccCchhhhCCCCCCEEEcccC-ccccch-hhhcCCCCceEEEccccccccc-hhhhcCCCCCCEEEcc
Q psy3785          53 KLKVLNLQYNNLKGLPDEIRHLTNLNELALNNN-QLEMIN-EAVYDLPHLYKFNVSNNMIAKI-SDNIGNLTSLLVLNIS  129 (184)
Q Consensus        53 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~L~~l~l~  129 (184)
                      ..+.++..++.+.+.|..+..+++++.|+++++ .++.++ ..+..+++|+.|++++|+++.+ +..|..++.|+.++++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344566777777777777777777888888655 477775 4456677888888888888777 4557778888888888


Q ss_pred             CCCCCCcchhhhcCCCCCEEeccCCCCCC
Q psy3785         130 NNKIESLPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       130 ~n~l~~l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      +|+++.+|..+.....++.++|++|++..
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCCCcccChhhhccccccccccCCCcccC
Confidence            88888877665555678888888888864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.44  E-value=6.9e-16  Score=108.99  Aligned_cols=137  Identities=18%  Similarity=0.196  Sum_probs=110.8

Q ss_pred             ccccccCCCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhc
Q psy3785          16 LVSLVGSASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVY   95 (184)
Q Consensus        16 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~   95 (184)
                      +..++.+++.+++|+.|++++|.+.  .++ .+..+++|+.|++++|.++.+|.....+++|+.|++++|.++.++ .+.
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~--~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~  112 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIE  112 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEES--CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHH
T ss_pred             hhhhhhHHhcccccceeECcccCCC--Ccc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccc
Confidence            3344556778999999999999987  343 588899999999999999998766565678999999999999875 356


Q ss_pred             CCCCceEEEccccccccch--hhhcCCCCCCEEEccCCCCCCcch-----------hhhcCCCCCEEeccCCCCCC
Q psy3785          96 DLPHLYKFNVSNNMIAKIS--DNIGNLTSLLVLNISNNKIESLPE-----------NIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~l~~-----------~~~~~~~L~~l~L~~n~l~~  158 (184)
                      .+++|+.|++++|.++.++  ..+..++.|+.+++++|.+...+.           .+..+|+|+.+|  +..++.
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~  186 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTT
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCH
Confidence            7889999999999999775  468999999999999998763221           156789999886  555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.5e-12  Score=93.76  Aligned_cols=153  Identities=22%  Similarity=0.214  Sum_probs=79.7

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecC-CccccC-chhhhCCCCCCEEEcccCccccchh--hhcCCC
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQY-NNLKGL-PDEIRHLTNLNELALNNNQLEMINE--AVYDLP   98 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l-p~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~   98 (184)
                      +..+++|+++++++|.+.....+..+..++.++++.+.. +.+..+ +..+.++++|+.+++.+|.++..+.  .+..+.
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~  128 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ  128 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSS
T ss_pred             hhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            456666666666666655422233455556666665543 344443 3345666677777776666653321  111122


Q ss_pred             -------------------------CceEEEccccccccchhhhcCCCCCCEE-EccCCCCCCcchh-hhcCCCCCEEec
Q psy3785          99 -------------------------HLYKFNVSNNMIAKISDNIGNLTSLLVL-NISNNKIESLPEN-IGYMKSLTHIDA  151 (184)
Q Consensus        99 -------------------------~l~~L~l~~n~~~~~~~~~~~~~~L~~l-~l~~n~l~~l~~~-~~~~~~L~~l~L  151 (184)
                                               .++.+.+.+|+++.++........+..+ .+.+|.++++|.. +..+++|+.+++
T Consensus       129 ~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI  208 (242)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEEC
T ss_pred             ccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEEC
Confidence                                     2333444444444333322233333333 3445556666543 455677777777


Q ss_pred             cCCCCCCCcHHHhhhhhccccccc
Q psy3785         152 SHNTISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus       152 ~~n~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      ++|.|+.+|.+.+..+..|+.+.+
T Consensus       209 s~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         209 SRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             CCCcCCccCHHHHcCCcccccCcC
Confidence            777777766666666666655443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.1e-12  Score=90.96  Aligned_cols=136  Identities=18%  Similarity=0.228  Sum_probs=93.7

Q ss_pred             CCcCccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCc-hhhhCCC-CCCEEEcccCccccchhhhcCCCCc
Q psy3785          23 ASASALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLP-DEIRHLT-NLNELALNNNQLEMINEAVYDLPHL  100 (184)
Q Consensus        23 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~l  100 (184)
                      +..+++|+.++++++.+........+..+..++.+...++.+..++ ..+..++ .++.+++.+|+++.++.......++
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l  178 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL  178 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCE
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhh
Confidence            4566777777777776654333334444556666666666666654 3344443 6888999999999888766667776


Q ss_pred             eEEE-ccccccccchh-hhcCCCCCCEEEccCCCCCCcchh-hhcCCCCCEEeccCCCCCCCc
Q psy3785         101 YKFN-VSNNMIAKISD-NIGNLTSLLVLNISNNKIESLPEN-IGYMKSLTHIDASHNTISYVP  160 (184)
Q Consensus       101 ~~L~-l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~  160 (184)
                      ..+. +.+|.++.+|. .+.++++|+.+++++|+++++|.. +..++.|+.+++.  .+..+|
T Consensus       179 ~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~--~l~~lp  239 (242)
T d1xwdc1         179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLKKLP  239 (242)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE--SSSCSC
T ss_pred             hccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC--CCCcCC
Confidence            6664 57778998865 578999999999999999998763 5556666555543  355554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-11  Score=83.17  Aligned_cols=103  Identities=21%  Similarity=0.258  Sum_probs=79.8

Q ss_pred             cEEEeecCCCCCCCCcccccCCCCccEEEecCC-ccccCc-hhhhCCCCCCEEEcccCccccch-hhhcCCCCceEEEcc
Q psy3785          30 YTYEISSDTGSGESNMSQSEPVLKLKVLNLQYN-NLKGLP-DEIRHLTNLNELALNNNQLEMIN-EAVYDLPHLYKFNVS  106 (184)
Q Consensus        30 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~lp-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~l~~L~l~  106 (184)
                      +.++.+++...  ..|..+..++++++|++.++ .++.++ ..|..+++|+.|++++|+++.++ ..+..++++++|+++
T Consensus        11 ~~l~c~~~~~~--~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL--DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC--TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc--cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            44666666655  55777777888899998766 488775 45788889999999999988885 556688899999999


Q ss_pred             ccccccchhhhcCCCCCCEEEccCCCCC
Q psy3785         107 NNMIAKISDNIGNLTSLLVLNISNNKIE  134 (184)
Q Consensus       107 ~n~~~~~~~~~~~~~~L~~l~l~~n~l~  134 (184)
                      +|+++.+|........++.+++++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccccccccccCCCccc
Confidence            9999888765555557889999998875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.6e-10  Score=85.27  Aligned_cols=150  Identities=14%  Similarity=0.125  Sum_probs=67.9

Q ss_pred             CccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-CchhhhCCCCCCEEEcccC-cccc--chhhhcCCCCce
Q psy3785          26 SALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-LPDEIRHLTNLNELALNNN-QLEM--INEAVYDLPHLY  101 (184)
Q Consensus        26 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~l~~n-~l~~--~~~~~~~l~~l~  101 (184)
                      ...|++|+++++.+....+...+..+++|++|++.++.+++ .+..+..+++|++|+++++ .++.  +..-+..+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34555555555544433333344445555555555555443 2333444455555555553 2331  111122344444


Q ss_pred             EEEcccc-ccc------------------------------cchhhhcCCCCCCEEEccCC-CCC-CcchhhhcCCCCCE
Q psy3785         102 KFNVSNN-MIA------------------------------KISDNIGNLTSLLVLNISNN-KIE-SLPENIGYMKSLTH  148 (184)
Q Consensus       102 ~L~l~~n-~~~------------------------------~~~~~~~~~~~L~~l~l~~n-~l~-~l~~~~~~~~~L~~  148 (184)
                      +|+++++ .++                              .+.....+++.|+.+++++| .++ .....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            5544443 122                              11222344566666666664 344 23344556666666


Q ss_pred             EeccCC-CCCCCcHHHhhhhhccccccc
Q psy3785         149 IDASHN-TISYVPWKLFSKFHQNRSSRF  175 (184)
Q Consensus       149 l~L~~n-~l~~~~~~~~~~~~~l~~~~~  175 (184)
                      ++++++ .++.-.-..+..++.|+.+.+
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            666664 444321112233445554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.2e-10  Score=82.94  Aligned_cols=147  Identities=16%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             CcCccccEEEeecCC-CCCCCCcccccCCCCccEEEecCC-cccc--CchhhhC-CCCCCEEEcccCc--cc--cchhhh
Q psy3785          24 SASALLYTYEISSDT-GSGESNMSQSEPVLKLKVLNLQYN-NLKG--LPDEIRH-LTNLNELALNNNQ--LE--MINEAV   94 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--lp~~~~~-l~~L~~L~l~~n~--l~--~~~~~~   94 (184)
                      +..++|+.|+++++. +++..+......+++|++|++++| .+++  +...+.. .+.|+.|+++++.  ++  .+..-+
T Consensus        92 ~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~  171 (284)
T d2astb2          92 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  171 (284)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             hcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccc
Confidence            344555555555533 221112222334555666666554 2332  2222222 2456666666542  33  222233


Q ss_pred             cCCCCceEEEccccc-cc-cchhhhcCCCCCCEEEccCC-CCC-CcchhhhcCCCCCEEeccCCCCCC-CcHHHhhhhhc
Q psy3785          95 YDLPHLYKFNVSNNM-IA-KISDNIGNLTSLLVLNISNN-KIE-SLPENIGYMKSLTHIDASHNTISY-VPWKLFSKFHQ  169 (184)
Q Consensus        95 ~~l~~l~~L~l~~n~-~~-~~~~~~~~~~~L~~l~l~~n-~l~-~l~~~~~~~~~L~~l~L~~n~l~~-~~~~~~~~~~~  169 (184)
                      ..+++|++|+++++. ++ .....+.++++|+++++++| .++ .-...+..+++|+.++++++ ++. .-..+...++.
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~  250 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH  250 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc
Confidence            457899999999874 66 33566788999999999996 566 23345788999999999987 433 22334455555


Q ss_pred             cc
Q psy3785         170 NR  171 (184)
Q Consensus       170 l~  171 (184)
                      ++
T Consensus       251 L~  252 (284)
T d2astb2         251 LQ  252 (284)
T ss_dssp             SE
T ss_pred             cc
Confidence            54

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.94  E-value=2e-10  Score=86.74  Aligned_cols=163  Identities=12%  Similarity=0.092  Sum_probs=89.6

Q ss_pred             cccCCCcCccccEEEeecCCCCCCC---CcccccCCCCccEEEecCCcccc-----------------------------
Q psy3785          19 LVGSASASALLYTYEISSDTGSGES---NMSQSEPVLKLKVLNLQYNNLKG-----------------------------   66 (184)
Q Consensus        19 ~~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~-----------------------------   66 (184)
                      +...+...++|+.+++++|.+....   +...+...++|++|++++|.+..                             
T Consensus        85 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~  164 (344)
T d2ca6a1          85 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  164 (344)
T ss_dssp             HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             HHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceee
Confidence            3444455667777777777665422   23333445666667666665421                             


Q ss_pred             -------------CchhhhCCCCCCEEEcccCcccc------chhhhcCCCCceEEEcccccccc-----chhhhcCCCC
Q psy3785          67 -------------LPDEIRHLTNLNELALNNNQLEM------INEAVYDLPHLYKFNVSNNMIAK-----ISDNIGNLTS  122 (184)
Q Consensus        67 -------------lp~~~~~l~~L~~L~l~~n~l~~------~~~~~~~l~~l~~L~l~~n~~~~-----~~~~~~~~~~  122 (184)
                                   +...+...++++.|++++|.++.      +...+...++++.|++++|.++.     +...+..++.
T Consensus       165 l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         165 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             cccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccccc
Confidence                         11223344566667776666652      11233456667777777776652     2344566677


Q ss_pred             CCEEEccCCCCCC-----cchhhhc--CCCCCEEeccCCCCCC-----CcHHHhhhhhccccccccccccc
Q psy3785         123 LLVLNISNNKIES-----LPENIGY--MKSLTHIDASHNTISY-----VPWKLFSKFHQNRSSRFGCALIM  181 (184)
Q Consensus       123 L~~l~l~~n~l~~-----l~~~~~~--~~~L~~l~L~~n~l~~-----~~~~~~~~~~~l~~~~~~~~~~~  181 (184)
                      |+.+++++|.++.     +...+..  .+.|+.+++++|.|+.     +...+....+.++.+.+++|.+.
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            7777777777662     1122322  3457777777777655     11222223455666666666653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.93  E-value=4.8e-09  Score=78.32  Aligned_cols=122  Identities=27%  Similarity=0.377  Sum_probs=85.7

Q ss_pred             ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEcc
Q psy3785          27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVS  106 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~  106 (184)
                      .+++.|+++++..+  .+|+.   .++|++|++++|+++.+|..   ..+|+.|++.+|+++.++.-   .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccc
Confidence            35778888888765  56653   46788888888888888754   35788888888888766531   2358888888


Q ss_pred             ccccccchhhhcCCCCCCEEEccCCCCCCcch-------------------hhhcCCCCCEEeccCCCCCCCc
Q psy3785         107 NNMIAKISDNIGNLTSLLVLNISNNKIESLPE-------------------NIGYMKSLTHIDASHNTISYVP  160 (184)
Q Consensus       107 ~n~~~~~~~~~~~~~~L~~l~l~~n~l~~l~~-------------------~~~~~~~L~~l~L~~n~l~~~~  160 (184)
                      +|.++.+|. ++.++.|+.+++.++.+...+.                   .+..++.++.+.+..|.+...+
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             ccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccc
Confidence            888887765 5677888888888877653322                   1234555667777777665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.91  E-value=5.9e-10  Score=84.02  Aligned_cols=144  Identities=19%  Similarity=0.141  Sum_probs=89.6

Q ss_pred             cccccccCCCcCccccEEEeecCCCCCCC---------CcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEE
Q psy3785          15 RLVSLVGSASASALLYTYEISSDTGSGES---------NMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNEL   80 (184)
Q Consensus        15 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~---------~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L   80 (184)
                      ....+...+...+.++.++++++......         +...+...++|+.|++++|.++.     +...+...++|+.|
T Consensus        47 ~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  126 (344)
T d2ca6a1          47 AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL  126 (344)
T ss_dssp             HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchhe
Confidence            34556677788999999999987643211         23345667899999999999886     34455667899999


Q ss_pred             EcccCcccc-----c-------------------------------------hhhhcCCCCceEEEcccccccc------
Q psy3785          81 ALNNNQLEM-----I-------------------------------------NEAVYDLPHLYKFNVSNNMIAK------  112 (184)
Q Consensus        81 ~l~~n~l~~-----~-------------------------------------~~~~~~l~~l~~L~l~~n~~~~------  112 (184)
                      ++++|.+..     +                                     ...+...+.++.+++++|.++.      
T Consensus       127 ~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~  206 (344)
T d2ca6a1         127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL  206 (344)
T ss_dssp             ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred             ecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccc
Confidence            998887541     0                                     0011123445555555555541      


Q ss_pred             chhhhcCCCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCCC
Q psy3785         113 ISDNIGNLTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       113 ~~~~~~~~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      +...+..++.|+.+++++|.++.     +...+..++.|+.+++++|.|+.
T Consensus       207 l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         207 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            11234455666666666666541     23345566666666666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.91  E-value=3.4e-09  Score=79.19  Aligned_cols=100  Identities=30%  Similarity=0.356  Sum_probs=84.5

Q ss_pred             CCccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccchhhhcCCCCCCEEEccCC
Q psy3785          52 LKLKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKISDNIGNLTSLLVLNISNN  131 (184)
Q Consensus        52 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~L~~l~l~~n  131 (184)
                      .++++|+++++.++.+|+.   .++|++|++++|+++.+|..   ..+|+.|++++|+++.++..   .+.|+.+++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            3688999999999999863   46899999999999998864   46899999999999877532   146999999999


Q ss_pred             CCCCcchhhhcCCCCCEEeccCCCCCCCcH
Q psy3785         132 KIESLPENIGYMKSLTHIDASHNTISYVPW  161 (184)
Q Consensus       132 ~l~~l~~~~~~~~~L~~l~L~~n~l~~~~~  161 (184)
                      .+..+|. .+.++.|+.++++++.+...+.
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccc-hhhhccceeecccccccccccc
Confidence            9999885 5778999999999999887554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.9e-09  Score=82.08  Aligned_cols=108  Identities=19%  Similarity=0.228  Sum_probs=77.6

Q ss_pred             ccccEEEeecCCCCCCCCcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCcccc-----chhhhc-
Q psy3785          27 ALLYTYEISSDTGSGESNMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLEM-----INEAVY-   95 (184)
Q Consensus        27 ~~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----~~~~~~-   95 (184)
                      ++|+.||++++++.+..+...+..+++++.|++.+|.++.     ++..+...++|+.|++++|.++.     +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4678888888888875556666667888888888888774     45556778888888888888762     122222 


Q ss_pred             CCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCC
Q psy3785          96 DLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIE  134 (184)
Q Consensus        96 ~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~  134 (184)
                      ...++++|++++|.++.     ++..+..++.|+.+++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23468888888888763     3445677888888888888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=9.9e-09  Score=79.03  Aligned_cols=106  Identities=17%  Similarity=0.274  Sum_probs=84.4

Q ss_pred             CccEEEecCCcccc--CchhhhCCCCCCEEEcccCccc-----cchhhhcCCCCceEEEccccccccc-----hhhhc-C
Q psy3785          53 KLKVLNLQYNNLKG--LPDEIRHLTNLNELALNNNQLE-----MINEAVYDLPHLYKFNVSNNMIAKI-----SDNIG-N  119 (184)
Q Consensus        53 ~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~~l~~L~l~~n~~~~~-----~~~~~-~  119 (184)
                      +|++|+++++++++  +..-+..++++++|++++|.++     .+...+..+++|+.|++++|.++..     ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            58999999999997  3445677889999999999988     3345567889999999999998732     22332 3


Q ss_pred             CCCCCEEEccCCCCCC-----cchhhhcCCCCCEEeccCCCCCC
Q psy3785         120 LTSLLVLNISNNKIES-----LPENIGYMKSLTHIDASHNTISY  158 (184)
Q Consensus       120 ~~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~L~~n~l~~  158 (184)
                      ...|+.+++++|.+++     ++..+..++.|+.+++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            3579999999999984     34556788999999999999876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.7e-08  Score=68.04  Aligned_cols=63  Identities=24%  Similarity=0.284  Sum_probs=32.7

Q ss_pred             hCCCCCCEEEcccCccccch---hhhcCCCCceEEEccccccccchh-hhcCCCCCCEEEccCCCCC
Q psy3785          72 RHLTNLNELALNNNQLEMIN---EAVYDLPHLYKFNVSNNMIAKISD-NIGNLTSLLVLNISNNKIE  134 (184)
Q Consensus        72 ~~l~~L~~L~l~~n~l~~~~---~~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~  134 (184)
                      ..++.|++|++++|+++.++   ..+..+++|+.|++++|.++.+++ .......++.+++.+|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            44566666666666666442   223345556666666666554432 1222334555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.38  E-value=7.1e-07  Score=60.13  Aligned_cols=107  Identities=18%  Similarity=0.216  Sum_probs=69.8

Q ss_pred             CCCCccEEEecCC-cccc-----CchhhhCCCCCCEEEcccCccc-----cchhhhcCCCCceEEEcccccccc-----c
Q psy3785          50 PVLKLKVLNLQYN-NLKG-----LPDEIRHLTNLNELALNNNQLE-----MINEAVYDLPHLYKFNVSNNMIAK-----I  113 (184)
Q Consensus        50 ~l~~L~~L~l~~n-~l~~-----lp~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~~l~~L~l~~n~~~~-----~  113 (184)
                      +.++|++|+++++ .++.     +...+...+++++|++++|.++     .+...+...+.++.|++++|.++.     +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3466777777764 4543     2344556667888888887776     222334456678888888887772     2


Q ss_pred             hhhhcCCCCCCEEEccCCCCCCc--------chhhhcCCCCCEEeccCCCC
Q psy3785         114 SDNIGNLTSLLVLNISNNKIESL--------PENIGYMKSLTHIDASHNTI  156 (184)
Q Consensus       114 ~~~~~~~~~L~~l~l~~n~l~~l--------~~~~~~~~~L~~l~L~~n~l  156 (184)
                      ...+...+.|+.+++.+|.+..+        ...+...+.|..++++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            34567778888888888765532        33456678888888866543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.9e-07  Score=61.15  Aligned_cols=116  Identities=18%  Similarity=0.142  Sum_probs=75.0

Q ss_pred             ccEEEecCCccccCchhhhCCCCCCEEEcccCccccchhhhcCCCCceEEEccccccccc---hhhhcCCCCCCEEEccC
Q psy3785          54 LKVLNLQYNNLKGLPDEIRHLTNLNELALNNNQLEMINEAVYDLPHLYKFNVSNNMIAKI---SDNIGNLTSLLVLNISN  130 (184)
Q Consensus        54 L~~L~l~~n~l~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~l~~L~l~~n~~~~~---~~~~~~~~~L~~l~l~~  130 (184)
                      .+.|++++....   ..+..+..+..+....+....++.....++.|++|++++|+++.+   +..+..++.|+.+++++
T Consensus        24 ~~~Ldls~l~~~---~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          24 QQALDLKGLRSD---PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             SCCBCCCCCSSC---TTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT
T ss_pred             hCeeecccCCCC---chhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc
Confidence            344555544322   123333333444444444444444444689999999999999866   34567889999999999


Q ss_pred             CCCCCcchh-hhcCCCCCEEeccCCCCCCCcH-------HHhhhhhcccc
Q psy3785         131 NKIESLPEN-IGYMKSLTHIDASHNTISYVPW-------KLFSKFHQNRS  172 (184)
Q Consensus       131 n~l~~l~~~-~~~~~~L~~l~L~~n~l~~~~~-------~~~~~~~~l~~  172 (184)
                      |.+++++.. ......++.+++++|+++....       .++..+++++.
T Consensus       101 N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~  150 (162)
T d1koha1         101 NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLR  150 (162)
T ss_dssp             SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCE
T ss_pred             CccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCE
Confidence            999988753 2344579999999999987322       33445555553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.00  E-value=6.2e-06  Score=55.16  Aligned_cols=107  Identities=16%  Similarity=0.204  Sum_probs=64.6

Q ss_pred             CCCCccEEEecC-Ccccc-----CchhhhCCCCCCEEEcccCcccc-----chhhhcCCCCceEEEccccccc-----cc
Q psy3785          50 PVLKLKVLNLQY-NNLKG-----LPDEIRHLTNLNELALNNNQLEM-----INEAVYDLPHLYKFNVSNNMIA-----KI  113 (184)
Q Consensus        50 ~l~~L~~L~l~~-n~l~~-----lp~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~l~~l~~L~l~~n~~~-----~~  113 (184)
                      +.+.|++|++++ +.++.     +...+...++|+.|++++|.++.     +...+.....++.++++++.++     .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            346666676665 34543     23445566677777777776651     2233344567777777777765     23


Q ss_pred             hhhhcCCCCCCEEEc--cCCCCC-----CcchhhhcCCCCCEEeccCCCC
Q psy3785         114 SDNIGNLTSLLVLNI--SNNKIE-----SLPENIGYMKSLTHIDASHNTI  156 (184)
Q Consensus       114 ~~~~~~~~~L~~l~l--~~n~l~-----~l~~~~~~~~~L~~l~L~~n~l  156 (184)
                      ...+...+.++.+++  ++|.+.     .+...+...+.|+.+++..+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            345667777776555  455565     2344566788888888866543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.99  E-value=1.7e-05  Score=53.10  Aligned_cols=89  Identities=26%  Similarity=0.339  Sum_probs=68.9

Q ss_pred             hCCCCCCEEEcccC-cccc-----chhhhcCCCCceEEEcccccccc-----chhhhcCCCCCCEEEccCCCCCC-----
Q psy3785          72 RHLTNLNELALNNN-QLEM-----INEAVYDLPHLYKFNVSNNMIAK-----ISDNIGNLTSLLVLNISNNKIES-----  135 (184)
Q Consensus        72 ~~l~~L~~L~l~~n-~l~~-----~~~~~~~l~~l~~L~l~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~-----  135 (184)
                      .+.++|+.|+++++ .++.     +-..+....++++|++++|.++.     +...+...+.|+.+++++|.++.     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34579999999975 5661     33456677889999999999872     34456778899999999999982     


Q ss_pred             cchhhhcCCCCCEEeccCCCCCCCc
Q psy3785         136 LPENIGYMKSLTHIDASHNTISYVP  160 (184)
Q Consensus       136 l~~~~~~~~~L~~l~L~~n~l~~~~  160 (184)
                      +-..+...++|+.+++++|.+..+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g  116 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLG  116 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCcc
Confidence            2345777889999999999887754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.75  E-value=6.1e-06  Score=55.21  Aligned_cols=110  Identities=12%  Similarity=0.123  Sum_probs=80.6

Q ss_pred             CcCccccEEEeecCC-CCCCC---CcccccCCCCccEEEecCCcccc-----CchhhhCCCCCCEEEcccCccc-----c
Q psy3785          24 SASALLYTYEISSDT-GSGES---NMSQSEPVLKLKVLNLQYNNLKG-----LPDEIRHLTNLNELALNNNQLE-----M   89 (184)
Q Consensus        24 ~~~~~l~~l~l~~~~-~~~~~---~~~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~l~~n~l~-----~   89 (184)
                      ...+.|+.+++++++ +....   +...+...++|++|++++|.++.     +.+.+...++++.+++.+|.++     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            356899999999754 44322   44556678999999999999885     4456677889999999999887     2


Q ss_pred             chhhhcCCCCceEEEc--ccccccc-----chhhhcCCCCCCEEEccCCCC
Q psy3785          90 INEAVYDLPHLYKFNV--SNNMIAK-----ISDNIGNLTSLLVLNISNNKI  133 (184)
Q Consensus        90 ~~~~~~~l~~l~~L~l--~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l  133 (184)
                      +...+...++++.+++  ++|.++.     +...+...+.|+.+++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            3355566778887666  5666762     345567789999999977643