Psyllid ID: psy37

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
ATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTS
Secondary Structure (PSIPRED)
ccccccccccccEEEccEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEEccHHHHHHHccccccccEEEEcccccccEEEEEEEcEEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccHHHEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEcEEEEccEEEcccccHHHHHHHHcHHHHHHHHccccEEEEEEccccccHHHHHcEcccccccccccHHHHHHHHHHEEccEEEcccccHHHHHHHHcHHHHHHHHccccEEEEEEccccccHHHHHcEcEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHcccccccHHHcHHHHHcHHHcccccEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEcccccccccccccccccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
attdnspdahkdftfdhsywsfdpsspqfasqeQVFNDLGMDVVDAAFEGYNACVFaygqtgsgktftmmgskattdnspdahkdftfdhsywsfdpsspqfasqeQVFNDLGMDVVDAAFEGYNACVFaygqtgsgktfTMMGskarnfgegkdcVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELstkkstfipyrDSVLTWLLKdslggnskTIMIAAIspadvnyseTLSTLRYANRakniinkptvnedpntRIIRELHDEITKLKAMLTS
Flexible Loop (DISEMBL)
attdnspdahkdFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELstkkstfipyrDSVLTWLLKDSLGGNSKTIMIAAispadvnySETLSTLRYanrakniinkptvnedpntrIIRELHDEITKLKAMLTS
Low Complexity Region (SEG)
ATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTS
Disordered region (IsUnstruct)
*************TFDHSYWSF**********EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT*******************FTFDHSYWSF**********EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT********IIR***************
Disordered Region (DISOPRED)
***********DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF*******GKTFTMMGS***********************EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML**
Disordered Region (DISEMBL)
********AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTS
Disordered Region (DISPRO)
*******DAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGE*******************HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
P23678	1584	Kinesin-like protein unc-	yes	N/A	0.949	0.167	0.424	9e-61
Q9NQT8	1826	Kinesin-like protein KIF1	yes	N/A	0.960	0.146	0.393	6e-51
Q96L93	1317	Kinesin-like protein KIF1	no	N/A	0.408	0.086	0.745	1e-45
B1AVY7	1312	Kinesin-like protein KIF1	yes	N/A	0.408	0.086	0.745	2e-45
A1ZAJ2	1670	Kinesin-like protein unc-	no	N/A	0.415	0.069	0.677	2e-40
O35787	1097	Kinesin-like protein KIF1	no	N/A	0.415	0.105	0.669	3e-40
O35071	1100	Kinesin-like protein KIF1	no	N/A	0.415	0.105	0.669	4e-40
Q28WQ1	1671	Kinesin-like protein unc-	no	N/A	0.415	0.069	0.669	4e-40
O43896	1103	Kinesin-like protein KIF1	no	N/A	0.415	0.105	0.661	6e-40
Q9H1H9	1805	Kinesin-like protein KIF1	no	N/A	0.451	0.069	0.640	1e-39

>sp|P23678|UN104_CAEEL Kinesin-like protein unc-104 OS=Caenorhabditis elegans GN=unc-104 PE=2 SV=3

 Score =  233 bits (595), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 187/330 (56%), Gaps = 65/330 (19%)

Query: 13  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
           F FDHSYWSF  + P F +Q+QV+ +LG+++++ AFEGYN C+FAYGQTGSGK++TMMG 
Sbjct: 47  FNFDHSYWSFARNDPHFITQKQVYEELGVEMLEHAFEGYNVCIFAYGQTGSGKSYTMMGK 106

Query: 73  K-----------------ATTDNSPDAHKDFTFDHSYWSF------DPSSPQFASQEQV- 108
                             A  DN+ D    ++ + SY         D  +P      +V 
Sbjct: 107 ANDPDEMGIIPRLCNDLFARIDNNNDKDVQYSVEVSYMEIYCERVKDLLNPNSGGNLRVR 166

Query: 109 --------FNDLGM-------DVVDAAFEGYNACVFAYGQTGSGKT-----FTMMGSKAR 148
                    +DL         D+ +   EG  A   A     S  +     FT++ ++ R
Sbjct: 167 EHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAATNMNSTSSRSHAVFTIVLTQKR 226

Query: 149 -----NFGEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELS 191
                N    K    S+V+             G RLKEGA+INKSL TLG VIS LAE S
Sbjct: 227 HCADSNLDTEKHSKISLVDLAGSERANSTGAEGQRLKEGANINKSLTTLGLVISKLAEES 286

Query: 192 TKKST----FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
           TKK       IPYRDSVLTWLL+++LGGNSKT M+AA+SPAD+N+ ETLSTLRYA+RAK 
Sbjct: 287 TKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTLRYADRAKQ 346

Query: 248 IINKPTVNEDPNTRIIRELHDEITKLKAML 277
           I+ +  VNEDPN ++IREL++E+ KL+ +L
Sbjct: 347 IVCQAVVNEDPNAKLIRELNEEVIKLRHIL 376

Involved in microtubule-associated transport.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1

 Score =  201 bits (510), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 130/330 (39%), Positives = 173/330 (52%), Gaps = 62/330 (18%)

Query: 11  KDFTFDHSYWSFDPS-SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
           K F +DH +WS D S   ++A Q+ VF  LG +++  AF+GYNAC+FAYGQTGSGK++TM
Sbjct: 54  KCFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 113

Query: 70  MGSK--------------ATTDNSPDAHKDFTFDHSYWS---------FDPSSPQFASQE 106
           MG+                 T    +  + F  + SY            DP   +   + 
Sbjct: 114 MGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKV 173

Query: 107 QVFNDLG--------------MDVVDAAFEGYNACVFAYGQTGSGK-----------TFT 141
           +  + LG               D+     EG  +   A                   T T
Sbjct: 174 REHSVLGPYVDGLSKLAATSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVLKITLTHT 233

Query: 142 MMGSKARNFGE--GKDCVCSIVEAGDRLKEGA---------HINKSLVTLGSVISSLAEL 190
           +  +K+   GE  GK  +  +  +    K GA         +IN+SL TLG VIS+LA+ 
Sbjct: 234 LYDAKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINESLTTLGLVISALADQ 293

Query: 191 ST--KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
           S    K+ F+PYRDSVLTWLLKDSLGGNSKT M+A +SPA  NY ETLSTLRYA+RAK+I
Sbjct: 294 SAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHI 353

Query: 249 INKPTVNEDPNTRIIRELHDEITKLKAMLT 278
           +N   VNEDPN RIIR+L +E+ KL+  LT
Sbjct: 354 VNNAVVNEDPNARIIRDLREEVEKLREQLT 383

Involved in reorganization of the cortical cytoskeleton. Regulates axon formation by promoting the formation of extra axons. May be functionally important for the intracellular trafficking of MAGUKs and associated protein complexes.

Homo sapiens (taxid: 9606)

>sp|Q96L93|KI16B_HUMAN Kinesin-like protein KIF16B OS=Homo sapiens GN=KIF16B PE=1 SV=2

 Score =  183 bits (465), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/122 (74%), Positives = 101/122 (82%), Gaps = 8/122 (6%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELS--------TKKSTFIPYRDSVLTWLLKDSLGG 215
           G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct: 266 GVRLKEGGNINKSLVTLGNVISALADLSQDAANTLAKKKQVFVPYRDSVLTWLLKDSLGG 325

Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
           NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct: 326 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKT 385

Query: 276 ML 277
           +L
Sbjct: 386 LL 387

Plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. Regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development.

Homo sapiens (taxid: 9606)

>sp|B1AVY7|KI16B_MOUSE Kinesin-like protein KIF16B OS=Mus musculus GN=Kif16b PE=1 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/122 (74%), Positives = 101/122 (82%), Gaps = 8/122 (6%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
           G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct: 266 GVRLKEGGNINKSLVTLGNVISALADLSQDAANPLVKKKQVFVPYRDSVLTWLLKDSLGG 325

Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
           NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct: 326 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKT 385

Query: 276 ML 277
           +L
Sbjct: 386 LL 387

Plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. Regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development.

Mus musculus (taxid: 10090)

>sp|A1ZAJ2|KIF1A_DROME Kinesin-like protein unc-104 OS=Drosophila melanogaster GN=unc-104 PE=1 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 99/121 (81%), Gaps = 5/121 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELS-----TKKSTFIPYRDSVLTWLLKDSLGGNSK 218
           G RLKEGA+INKSL TLG VIS+LAE++     TKK+ FIPYRDS LTWLL+++LGGNSK
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEVASKKKNTKKADFIPYRDSALTWLLRENLGGNSK 321

Query: 219 TIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLT 278
           T MIAAISPAD+NY ETLSTLRYA+RAK I+ K  VNED N ++IREL +EI KL+ +L 
Sbjct: 322 TAMIAAISPADINYDETLSTLRYADRAKQIVCKAVVNEDANAKLIRELKEEIQKLRDLLK 381

Query: 279 S 279
           +
Sbjct: 382 A 382

Required for presynaptic maturation, has a role in axonal transport of dense-core vesicles carrying synaptic vesicle precursors, components required for the morphological transformation of axonal growth cones to mature boutons.

Drosophila melanogaster (taxid: 7227)

>sp|O35787|KIF1C_RAT Kinesin-like protein KIF1C OS=Rattus norvegicus GN=Kif1c PE=1 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/118 (66%), Positives = 97/118 (82%), Gaps = 2/118 (1%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKK--STFIPYRDSVLTWLLKDSLGGNSKTIM 221
           G RLKEGA+INKSL TLG VIS+LA+L +KK  S FIPYRDSVLTWLLK++LGGNS+T M
Sbjct: 261 GMRLKEGANINKSLTTLGKVISALADLQSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAM 320

Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTS 279
           IAA+SPAD+NY ETLSTLRYA+R K I     +NEDPN R+IREL +E+ +L+ +L +
Sbjct: 321 IAALSPADINYEETLSTLRYADRTKQIRCNAVINEDPNARLIRELQEEVARLRELLMA 378

Probable motor protein.

Rattus norvegicus (taxid: 10116)

>sp|O35071|KIF1C_MOUSE Kinesin-like protein KIF1C OS=Mus musculus GN=Kif1c PE=1 SV=2

 Score =  165 bits (417), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 79/118 (66%), Positives = 97/118 (82%), Gaps = 2/118 (1%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKK--STFIPYRDSVLTWLLKDSLGGNSKTIM 221
           G RLKEGA+INKSL TLG VIS+LA+L +KK  S FIPYRDSVLTWLLK++LGGNS+T M
Sbjct: 262 GMRLKEGANINKSLTTLGKVISALADLQSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAM 321

Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTS 279
           IAA+SPAD+NY ETLSTLRYA+R K I     +NEDPN R+IREL +E+ +L+ +L +
Sbjct: 322 IAALSPADINYEETLSTLRYADRTKQIRCNAVINEDPNARLIRELQEEVARLRDLLMA 379

Motor required for the retrograde transport of Golgi vesicles to the endoplasmic reticulum. Has a microtubule plus end-directed motility.

Mus musculus (taxid: 10090)

>sp|Q28WQ1|KIF1A_DROPS Kinesin-like protein unc-104 OS=Drosophila pseudoobscura pseudoobscura GN=unc-104 PE=3 SV=1

 Score =  165 bits (417), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 5/121 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKK-----STFIPYRDSVLTWLLKDSLGGNSK 218
           G RLKEGA+INKSL TLG VIS+LAE+++KK     + FIPYRDS LTWLL+++LGGNSK
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEVASKKKHNKKADFIPYRDSALTWLLRENLGGNSK 321

Query: 219 TIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLT 278
           T MIAAISPAD+NY ETLSTLRYA+RAK I+ K  VNED N ++IREL +EI KL+ +L 
Sbjct: 322 TAMIAAISPADINYDETLSTLRYADRAKQIVCKAVVNEDANAKLIRELKEEIQKLRDLLK 381

Query: 279 S 279
           +
Sbjct: 382 A 382

Required for presynaptic maturation, has a role in axonal transport of dense-core vesicles carrying synaptic vesicle precursors, components required for the morphological transformation of axonal growth cones to mature boutons.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|O43896|KIF1C_HUMAN Kinesin-like protein KIF1C OS=Homo sapiens GN=KIF1C PE=1 SV=3

 Score =  164 bits (415), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 78/118 (66%), Positives = 97/118 (82%), Gaps = 2/118 (1%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKK--STFIPYRDSVLTWLLKDSLGGNSKTIM 221
           G RLKEGA+INKSL TLG VIS+LA++ +KK  S FIPYRDSVLTWLLK++LGGNS+T M
Sbjct: 262 GMRLKEGANINKSLTTLGKVISALADMQSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAM 321

Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTS 279
           IAA+SPAD+NY ETLSTLRYA+R K I     +NEDPN R+IREL +E+ +L+ +L +
Sbjct: 322 IAALSPADINYEETLSTLRYADRTKQIRCNAIINEDPNARLIRELQEEVARLRELLMA 379

Motor required for the retrograde transport of Golgi vesicles to the endoplasmic reticulum. Has a microtubule plus end-directed motility.

Homo sapiens (taxid: 9606)

>sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A OS=Homo sapiens GN=KIF13A PE=1 SV=2

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 2/128 (1%)

Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKK--STFIPYRDSVLTWLLK 210
           G + V     AG+RLKEG++INKSL TLG VISSLA+ +  K  S F+PYRDSVLTWLLK
Sbjct: 255 GSERVSKTGAAGERLKEGSNINKSLTTLGLVISSLADQAAGKGKSKFVPYRDSVLTWLLK 314

Query: 211 DSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEI 270
           D+LGGNS+T MIA ISPA  NY ETLSTLRYA+RAK I+N   VNEDPN ++IREL +E+
Sbjct: 315 DNLGGNSQTSMIATISPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAKVIRELREEV 374

Query: 271 TKLKAMLT 278
            KL+  L+
Sbjct: 375 EKLREQLS 382

Plus end-directed microtubule-dependent motor protein involved in intracellular transport and regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis and cytokinesis. Mediates the transport of M6PR-containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex. During melanosome maturation, required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. Also required for the abcission step in cytokinesis: mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
260790933	1038	hypothetical protein BRAFLDRAFT_86166 [B	0.964	0.259	0.487	3e-79
384490525	1343	hypothetical protein RO3G_06452 [Rhizopu	0.903	0.187	0.475	5e-60
390357122	1677	PREDICTED: LOW QUALITY PROTEIN: kinesin-	0.964	0.160	0.422	3e-59
453231792	1628	Protein UNC-104, isoform b [Caenorhabdit	0.949	0.162	0.424	5e-59
54042065	1584	RecName: Full=Kinesin-like protein unc-1	0.949	0.167	0.424	5e-59
7511463	1584	kinesin-like protein unc-104 - Caenorhab	0.949	0.167	0.424	5e-59
453231794	1584	Protein UNC-104, isoform a [Caenorhabdit	0.949	0.167	0.424	5e-59
156478	1584	kinesin-related protein [Caenorhabditis	0.949	0.167	0.424	6e-59
270015064	1824	hypothetical protein TcasGA2_TC014226 [T	0.956	0.146	0.428	2e-58
301620478	1890	PREDICTED: kinesin-like protein KIF1B [X	0.978	0.144	0.414	2e-58

>gi|260790933|ref|XP_002590495.1| hypothetical protein BRAFLDRAFT_86166 [Branchiostoma floridae] gi|229275689|gb|EEN46506.1| hypothetical protein BRAFLDRAFT_86166 [Branchiostoma floridae]

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 162/332 (48%), Positives = 204/332 (61%), Gaps = 63/332 (18%)

Query: 11  KDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
           K F FD+SYWS  +   P FA Q +V+ D+G +++  AFEGYN C+FAYGQTG+GK++TM
Sbjct: 16  KAFNFDYSYWSHTNEQDPNFAGQSKVYQDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 75

Query: 70  MGS-------------------------------------KATTDNSPDAHKD---FTFD 89
           MG                                      K T    P   KD   F FD
Sbjct: 76  MGKPEPRDQQGIIPQVAVRVRPFNNREIGRQAKCVISMKDKTTAIQHPKQSKDVKAFNFD 135

Query: 90  HSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAR 148
           +SYWS  +   P FA Q +V+ D+G +++  AFEGYN C+FAYGQTG+GK++TMMG    
Sbjct: 136 YSYWSHTNEQDPNFAGQSKVYQDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKPEP 195

Query: 149 NFGEG---KDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELST- 192
              +G   +    S+V+             GDRLKEGA+INKSL TLG VI +LAE S  
Sbjct: 196 RDQQGIIPQVAKISLVDLAGSERANATGAKGDRLKEGANINKSLTTLGKVIHALAESSQS 255

Query: 193 -----KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
                KKS FIPYRDSVLTWLL+++LGGNSKT MIAA+SPAD+NY ETLSTLRYA+RAK 
Sbjct: 256 GSKKRKKSDFIPYRDSVLTWLLRENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQ 315

Query: 248 IINKPTVNEDPNTRIIRELHDEITKLKAMLTS 279
           I+ K  VNEDPN R+IREL +E+ +LK +L S
Sbjct: 316 IVCKAVVNEDPNARLIRELKEEVMRLKELLKS 347

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|384490525|gb|EIE81747.1| hypothetical protein RO3G_06452 [Rhizopus delemar RA 99-880]

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 138/290 (47%), Positives = 174/290 (60%), Gaps = 38/290 (13%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           K FTFDHSYWS D   P +A QE V+NDLG +++D AF+GYN C+FAYGQTGSGK++TM+
Sbjct: 47  KAFTFDHSYWSVDKDHPDYADQELVYNDLGKELLDHAFDGYNCCIFAYGQTGSGKSYTMV 106

Query: 71  GSKAT-----TDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEG-Y 124
                      D+       F  + SY              +++N+   D+++   +G  
Sbjct: 107 FRTCVELFERIDDLTSPELTFQVEVSYI-------------EIYNEKVRDLLNPGNKGNL 153

Query: 125 NACVFAYGQ-----TGSGKTFTMMGSKARNFGEGKDCVCSIVE------------AGDRL 167
            A   A  Q     + S   FT+  +  R   + K    S+V+             G RL
Sbjct: 154 KARTVASTQMNATSSRSHAVFTLFLTSTRQDKKEKAARISLVDLAGSERATTTGATGVRL 213

Query: 168 KEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP 227
           KEGA+INKSL TLG VI++LA+   KK+  IPYRDSVLTWLLKDSLGGNSKT MIAAISP
Sbjct: 214 KEGANINKSLTTLGKVIAALADHHHKKNDHIPYRDSVLTWLLKDSLGGNSKTAMIAAISP 273

Query: 228 ADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML 277
           AD  Y ETLSTLRYA++AK I NK  +NEDPNTR+IREL  E+  LK  L
Sbjct: 274 AD--YDETLSTLRYADQAKRIKNKAVINEDPNTRLIRELKQELQALKDTL 321

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|390357122|ref|XP_003728932.1| PREDICTED: LOW QUALITY PROTEIN: kinesin-like protein KIF1B-like [Strongylocentrotus purpuratus]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 144/341 (42%), Positives = 190/341 (55%), Gaps = 72/341 (21%)

Query: 11  KDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
           K F FDHSYWS   P  P++ASQ +V+ DLG +++  AFEGYN C+FAYGQTG GK++TM
Sbjct: 47  KSFNFDHSYWSTTTPEDPRYASQRRVYEDLGQEMLQHAFEGYNVCIFAYGQTGGGKSYTM 106

Query: 70  MGSKATTDN----------------SPDAHKDFTFDHSYWS---------FDPSS----- 99
           MG +  +                  + D +  F+ + SY            +P +     
Sbjct: 107 MGKQEPSQQGIIPQLCQELFDRINCNSDPNLKFSVEVSYMEIYCERVRDLLNPKNQKNLR 166

Query: 100 ----PQFASQEQVFNDLGM----DVVDAAFEGYNACVFAYGQ-----TGSGKTFTMMGSK 146
               P      +  + L +    D+ D   EG  A   A        + S   FT++ ++
Sbjct: 167 VREHPLLGPYVEDLSKLAVTSFSDISDLMDEGNKARTVASTNMNETSSRSHAVFTIVFTQ 226

Query: 147 ARNFGEGKDCV-----CSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAE 189
            R+  E   C       S+V+             G RLKEGA+INKSL TLG VIS+LAE
Sbjct: 227 KRHDVETNMCTEKVSKVSLVDLAGSERADSTGAKGVRLKEGANINKSLTTLGKVISALAE 286

Query: 190 LSTK-----------KSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLST 238
           LS +           KS FIPYRDSVLTWLL+++LGGNSKT MIAA+SPAD+NY ETLST
Sbjct: 287 LSAELXKKKASKKKKKSDFIPYRDSVLTWLLRENLGGNSKTAMIAALSPADINYDETLST 346

Query: 239 LRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTS 279
           LRYA+RAKNI+ K  VNEDPN R+IREL +E+ +LK +L +
Sbjct: 347 LRYADRAKNIVCKAIVNEDPNARLIRELKEEVNRLKVILKT 387

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|453231792|ref|NP_001022041.2| Protein UNC-104, isoform b [Caenorhabditis elegans] gi|412979512|emb|CCD64623.2| Protein UNC-104, isoform b [Caenorhabditis elegans]

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 187/330 (56%), Gaps = 65/330 (19%)

Query: 13  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
           F FDHSYWSF  + P F +Q+QV+ +LG+++++ AFEGYN C+FAYGQTGSGK++TMMG 
Sbjct: 47  FNFDHSYWSFARNDPHFITQKQVYEELGVEMLEHAFEGYNVCIFAYGQTGSGKSYTMMGK 106

Query: 73  K-----------------ATTDNSPDAHKDFTFDHSYWSF------DPSSPQFASQEQV- 108
                             A  DN+ D    ++ + SY         D  +P      +V 
Sbjct: 107 ANDPDEMGIIPRLCNDLFARIDNNNDKDVQYSVEVSYMEIYCERVKDLLNPNSGGNLRVR 166

Query: 109 --------FNDLGM-------DVVDAAFEGYNACVFAYGQTGSGKT-----FTMMGSKAR 148
                    +DL         D+ +   EG  A   A     S  +     FT++ ++ R
Sbjct: 167 EHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAATNMNSTSSRSHAVFTIVLTQKR 226

Query: 149 -----NFGEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELS 191
                N    K    S+V+             G RLKEGA+INKSL TLG VIS LAE S
Sbjct: 227 HCADSNLDTEKHSKISLVDLAGSERANSTGAEGQRLKEGANINKSLTTLGLVISKLAEES 286

Query: 192 TKKST----FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
           TKK       IPYRDSVLTWLL+++LGGNSKT M+AA+SPAD+N+ ETLSTLRYA+RAK 
Sbjct: 287 TKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTLRYADRAKQ 346

Query: 248 IINKPTVNEDPNTRIIRELHDEITKLKAML 277
           I+ +  VNEDPN ++IREL++E+ KL+ +L
Sbjct: 347 IVCQAVVNEDPNAKLIRELNEEVIKLRHIL 376

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|54042065|sp|P23678.3|UN104_CAEEL RecName: Full=Kinesin-like protein unc-104; AltName: Full=Uncoordinated protein 104

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 187/330 (56%), Gaps = 65/330 (19%)

Query: 13  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
           F FDHSYWSF  + P F +Q+QV+ +LG+++++ AFEGYN C+FAYGQTGSGK++TMMG 
Sbjct: 47  FNFDHSYWSFARNDPHFITQKQVYEELGVEMLEHAFEGYNVCIFAYGQTGSGKSYTMMGK 106

Query: 73  K-----------------ATTDNSPDAHKDFTFDHSYWSF------DPSSPQFASQEQV- 108
                             A  DN+ D    ++ + SY         D  +P      +V 
Sbjct: 107 ANDPDEMGIIPRLCNDLFARIDNNNDKDVQYSVEVSYMEIYCERVKDLLNPNSGGNLRVR 166

Query: 109 --------FNDLGM-------DVVDAAFEGYNACVFAYGQTGSGKT-----FTMMGSKAR 148
                    +DL         D+ +   EG  A   A     S  +     FT++ ++ R
Sbjct: 167 EHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAATNMNSTSSRSHAVFTIVLTQKR 226

Query: 149 -----NFGEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELS 191
                N    K    S+V+             G RLKEGA+INKSL TLG VIS LAE S
Sbjct: 227 HCADSNLDTEKHSKISLVDLAGSERANSTGAEGQRLKEGANINKSLTTLGLVISKLAEES 286

Query: 192 TKKST----FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
           TKK       IPYRDSVLTWLL+++LGGNSKT M+AA+SPAD+N+ ETLSTLRYA+RAK 
Sbjct: 287 TKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTLRYADRAKQ 346

Query: 248 IINKPTVNEDPNTRIIRELHDEITKLKAML 277
           I+ +  VNEDPN ++IREL++E+ KL+ +L
Sbjct: 347 IVCQAVVNEDPNAKLIRELNEEVIKLRHIL 376

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|7511463|pir||T15822 kinesin-like protein unc-104 - Caenorhabditis elegans

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 187/330 (56%), Gaps = 65/330 (19%)

Query: 13  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
           F FDHSYWSF  + P F +Q+QV+ +LG+++++ AFEGYN C+FAYGQTGSGK++TMMG 
Sbjct: 47  FNFDHSYWSFARNDPHFITQKQVYEELGVEMLEHAFEGYNVCIFAYGQTGSGKSYTMMGK 106

Query: 73  K-----------------ATTDNSPDAHKDFTFDHSYWSF------DPSSPQFASQEQV- 108
                             A  DN+ D    ++ + SY         D  +P      +V 
Sbjct: 107 ANDPDEMGIIPRLCNDLFARIDNNNDKDVQYSVEVSYMEIYCERVKDLLNPNSGGNLRVR 166

Query: 109 --------FNDLGM-------DVVDAAFEGYNACVFAYGQTGSGKT-----FTMMGSKAR 148
                    +DL         D+ +   EG  A   A     S  +     FT++ ++ R
Sbjct: 167 EHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAATNMNSTSSRSHAVFTIVLTQKR 226

Query: 149 -----NFGEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELS 191
                N    K    S+V+             G RLKEGA+INKSL TLG VIS LAE S
Sbjct: 227 HCADSNLDTEKHSKISLVDLAGSERANSTGAEGQRLKEGANINKSLTTLGLVISKLAEES 286

Query: 192 TKKST----FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
           TKK       IPYRDSVLTWLL+++LGGNSKT M+AA+SPAD+N+ ETLSTLRYA+RAK 
Sbjct: 287 TKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTLRYADRAKQ 346

Query: 248 IINKPTVNEDPNTRIIRELHDEITKLKAML 277
           I+ +  VNEDPN ++IREL++E+ KL+ +L
Sbjct: 347 IVCQAVVNEDPNAKLIRELNEEVIKLRHIL 376

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|453231794|ref|NP_741019.3| Protein UNC-104, isoform a [Caenorhabditis elegans] gi|412979511|emb|CCD64622.2| Protein UNC-104, isoform a [Caenorhabditis elegans]

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 187/330 (56%), Gaps = 65/330 (19%)

Query: 13  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
           F FDHSYWSF  + P F +Q+QV+ +LG+++++ AFEGYN C+FAYGQTGSGK++TMMG 
Sbjct: 47  FNFDHSYWSFARNDPHFITQKQVYEELGVEMLEHAFEGYNVCIFAYGQTGSGKSYTMMGK 106

Query: 73  K-----------------ATTDNSPDAHKDFTFDHSYWSF------DPSSPQFASQEQV- 108
                             A  DN+ D    ++ + SY         D  +P      +V 
Sbjct: 107 ANDPDEMGIIPRLCNDLFARIDNNNDKDVQYSVEVSYMEIYCERVKDLLNPNSGGNLRVR 166

Query: 109 --------FNDLGM-------DVVDAAFEGYNACVFAYGQTGSGKT-----FTMMGSKAR 148
                    +DL         D+ +   EG  A   A     S  +     FT++ ++ R
Sbjct: 167 EHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAATNMNSTSSRSHAVFTIVLTQKR 226

Query: 149 -----NFGEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELS 191
                N    K    S+V+             G RLKEGA+INKSL TLG VIS LAE S
Sbjct: 227 HCADSNLDTEKHSKISLVDLAGSERANSTGAEGQRLKEGANINKSLTTLGLVISKLAEES 286

Query: 192 TKKST----FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
           TKK       IPYRDSVLTWLL+++LGGNSKT M+AA+SPAD+N+ ETLSTLRYA+RAK 
Sbjct: 287 TKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTLRYADRAKQ 346

Query: 248 IINKPTVNEDPNTRIIRELHDEITKLKAML 277
           I+ +  VNEDPN ++IREL++E+ KL+ +L
Sbjct: 347 IVCQAVVNEDPNAKLIRELNEEVIKLRHIL 376

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|156478|gb|AAA03517.1| kinesin-related protein [Caenorhabditis elegans]

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 187/330 (56%), Gaps = 65/330 (19%)

Query: 13  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
           F FDHSYWSF  + P F +Q+QV+ +LG+++++ AFEGYN C+FAYGQTGSGK++TMMG 
Sbjct: 47  FNFDHSYWSFARNDPHFITQKQVYEELGVEMLEHAFEGYNVCIFAYGQTGSGKSYTMMGK 106

Query: 73  K-----------------ATTDNSPDAHKDFTFDHSYWSF------DPSSPQFASQEQV- 108
                             A  DN+ D    ++ + SY         D  +P      +V 
Sbjct: 107 ANDPDEMGIIPRLCNDLFARIDNNNDKDVQYSVEVSYMEIYCERVKDLLNPNSGGNLRVR 166

Query: 109 --------FNDLGM-------DVVDAAFEGYNACVFAYGQTGSGKT-----FTMMGSKAR 148
                    +DL         D+ +   EG  A   A     S  +     FT++ ++ R
Sbjct: 167 EHPLLGPYVDDLTKMAVCSYHDICNLMDEGNKARTVAATNMNSTSSRSHAVFTIVLTQKR 226

Query: 149 -----NFGEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELS 191
                N    K    S+V+             G RLKEGA+INKSL TLG VIS LAE S
Sbjct: 227 HCADSNLDTEKHSKISLVDLAGSERANSTGAEGQRLKEGANINKSLTTLGLVISKLAEES 286

Query: 192 TKKST----FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
           TKK       IPYRDSVLTWLL+++LGGNSKT M+AA+SPAD+N+ ETLSTLRYA+RAK 
Sbjct: 287 TKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTLRYADRAKQ 346

Query: 248 IINKPTVNEDPNTRIIRELHDEITKLKAML 277
           I+ +  VNEDPN ++IREL++E+ KL+ +L
Sbjct: 347 IVCQAVVNEDPNAKLIRELNEEVIKLRHIL 376

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|270015064|gb|EFA11512.1| hypothetical protein TcasGA2_TC014226 [Tribolium castaneum]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/329 (42%), Positives = 179/329 (54%), Gaps = 62/329 (18%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           K F FDH + S DP+   FASQE VF+ LG D++D AF+GYNAC+FAYGQTGSGK++TMM
Sbjct: 52  KSFAFDHCFCSVDPTMEGFASQEVVFDCLGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 111

Query: 71  GSKATTDNSP--------------DAHKDFTFDHSYWS---------FDPSSPQFASQEQ 107
           GS+      P               +   +  + SY            DP + + + + +
Sbjct: 112 GSQENKGIIPRLCDALFGLIAKQQSSELTYKVEVSYMEIYNEKVHDLLDPQTNKQSLKVR 171

Query: 108 VFNDLG--------------MDVVDAAFEGYNACVFAYGQTGSGK-----------TFTM 142
             N LG               D+ +   EG  +   A     S             T T+
Sbjct: 172 EHNVLGPYVDGLSQLAVTSFQDIDNLMAEGNKSRTVAATNMNSESSRSHAVFTIVLTQTL 231

Query: 143 MGSKARNFGE-----------GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELS 191
           + +K+   GE           G +        GDRLKEG++INKSL TLG VIS LA+ S
Sbjct: 232 VDTKSGVTGEKVSRMSLVDLAGSERAVKTGAVGDRLKEGSNINKSLTTLGLVISKLADQS 291

Query: 192 T---KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
           +    K  F+PYRDSVLTW+LKD+LGGNSKT+M+A ISPA  NY ETLSTLRYA+RAK I
Sbjct: 292 SGNKNKDKFVPYRDSVLTWILKDNLGGNSKTVMVATISPAADNYEETLSTLRYADRAKRI 351

Query: 249 INKPTVNEDPNTRIIRELHDEITKLKAML 277
           +N   VNEDPN RIIREL  E+  LK ML
Sbjct: 352 VNHAVVNEDPNARIIRELRQEVETLKEML 380

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301620478|ref|XP_002939603.1| PREDICTED: kinesin-like protein KIF1B [Xenopus (Silurana) tropicalis]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 141/340 (41%), Positives = 194/340 (57%), Gaps = 67/340 (19%)

Query: 5   NSPDAHKDFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
           N  +A K F+FD+SYWS      P FASQ +V+ND+G ++++ AFEGYN C+FAYGQTG+
Sbjct: 42  NPKEAAKSFSFDYSYWSHTSQDDPCFASQSRVYNDIGKEMLEHAFEGYNVCIFAYGQTGA 101

Query: 64  GKTFTMMGSKATT-----------------DNSPDAHKDFTFDHSYWSF------DPSSP 100
           GK++TMMG +  T                 DN+ D    F+ + SY         D  +P
Sbjct: 102 GKSYTMMGKQEETQAGIIPQLCEDLFEKINDNNND-EVSFSVEVSYMEIYCERVRDLLNP 160

Query: 101 QFASQEQV--------------------FNDLGMDVVDAAFEGYNACVFAYGQTGSGK-- 138
           +     +V                    + D+  D++DA  +          +T S    
Sbjct: 161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYTDIA-DLMDAGNKARTVAATNMNETSSRSHA 219

Query: 139 TFTMMGSKAR-----NFGEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLG 181
            FT++ ++ R     N    K    S+V+             G RLKEGA+INKSL TLG
Sbjct: 220 VFTIVFTQKRLDIGTNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLG 279

Query: 182 SVISSLAELSTKK--STFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTL 239
            VIS+LAE+S KK  + FIPYRDSVLTWLL+++LGGNS+T M+AA+SPAD+NY ETLSTL
Sbjct: 280 KVISALAEVSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTL 339

Query: 240 RYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAMLTS 279
           RYA+RAK I     +NEDPN +++REL DE+T+LK +L +
Sbjct: 340 RYADRAKQIKCNAVINEDPNAKLVRELKDEVTRLKDLLRA 379

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
UNIPROTKB|I3LEQ5	412	I3LEQ5 "Uncharacterized protei	0.408	0.276	0.745	1.4e-64
UNIPROTKB|F1NUI7	1306	KIF16B "Uncharacterized protei	0.408	0.087	0.762	1.6e-64
ZFIN|ZDB-GENE-090313-233	1318	kif16ba "kinesin family member	0.408	0.086	0.762	1.7e-62
MGI|MGI:1098240	1312	Kif16b "kinesin family member	0.408	0.086	0.745	3.9e-62
UNIPROTKB|Q96L93	1317	KIF16B "Kinesin-like protein K	0.408	0.086	0.745	3.9e-62
UNIPROTKB|F1PJY0	1313	KIF16B "Uncharacterized protei	0.408	0.086	0.745	4.9e-62
UNIPROTKB|F1PJW5	1317	KIF16B "Uncharacterized protei	0.408	0.086	0.745	5e-62
UNIPROTKB|G3X690	1388	KIF16B "Uncharacterized protei	0.408	0.082	0.745	6e-62
UNIPROTKB|F1SBI9	1318	KIF16B "Uncharacterized protei	0.408	0.086	0.745	6.4e-62
UNIPROTKB|I3LQ03	1329	KIF16B "Uncharacterized protei	0.408	0.085	0.745	6.6e-62

UNIPROTKB|I3LEQ5 I3LEQ5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 439 (159.6 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 91/122 (74%), Positives = 101/122 (82%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   239 GVRLKEGGNINKSLVTLGNVISALADLSQDAANPLVKKKQVFVPYRDSVLTWLLKDSLGG 298

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct:   299 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKM 358

Query:   276 ML 277
             +L
Sbjct:   359 LL 360

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1NUI7 KIF16B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 452 (164.2 bits), Expect = 1.6e-64, Sum P(3) = 1.6e-64
 Identities = 93/122 (76%), Positives = 103/122 (84%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   251 GVRLKEGGNINKSLVTLGNVISALADLSQDATNPLSKKKQVFVPYRDSVLTWLLKDSLGG 310

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NEDPN ++IREL  EI +LKA
Sbjct:   311 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDPNVKLIRELRAEIARLKA 370

Query:   276 ML 277
             +L
Sbjct:   371 LL 372

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0001704 "formation of primary germ layer" evidence=IEA

GO:0001919 "regulation of receptor recycling" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IEA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IEA

GO:0007492 "endoderm development" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IEA

GO:0008574 "plus-end-directed microtubule motor activity" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0032801 "receptor catabolic process" evidence=IEA

GO:0043325 "phosphatidylinositol-3,4-bisphosphate binding" evidence=IEA

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

ZFIN|ZDB-GENE-090313-233 kif16ba "kinesin family member 16Ba" [Danio rerio (taxid:7955)]

 Score = 447 (162.4 bits), Expect = 1.7e-62, Sum P(3) = 1.7e-62
 Identities = 93/122 (76%), Positives = 102/122 (83%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   239 GVRLKEGGNINKSLVTLGNVISALADLSQEGGNSQLKKKQVFVPYRDSVLTWLLKDSLGG 298

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N R+IREL  EI +LKA
Sbjct:   299 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDSNVRLIRELRAEIARLKA 358

Query:   276 ML 277
             +L
Sbjct:   359 LL 360

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1098240 Kif16b "kinesin family member 16B" [Mus musculus (taxid:10090)]

 Score = 440 (159.9 bits), Expect = 3.9e-62, Sum P(2) = 3.9e-62
 Identities = 91/122 (74%), Positives = 101/122 (82%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   266 GVRLKEGGNINKSLVTLGNVISALADLSQDAANPLVKKKQVFVPYRDSVLTWLLKDSLGG 325

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct:   326 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKT 385

Query:   276 ML 277
             +L
Sbjct:   386 LL 387

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001704 "formation of primary germ layer" evidence=IMP

GO:0001919 "regulation of receptor recycling" evidence=ISO

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IMP

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=ISO

GO:0007492 "endoderm development" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IMP

GO:0008574 "plus-end-directed microtubule motor activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISO

GO:0032801 "receptor catabolic process" evidence=ISO

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0043325 "phosphatidylinositol-3,4-bisphosphate binding" evidence=ISO

GO:0045022 "early endosome to late endosome transport" evidence=ISO

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISO

UNIPROTKB|Q96L93 KIF16B "Kinesin-like protein KIF16B" [Homo sapiens (taxid:9606)]

 Score = 440 (159.9 bits), Expect = 3.9e-62, Sum P(2) = 3.9e-62
 Identities = 91/122 (74%), Positives = 101/122 (82%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   266 GVRLKEGGNINKSLVTLGNVISALADLSQDAANTLAKKKQVFVPYRDSVLTWLLKDSLGG 325

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct:   326 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKT 385

Query:   276 ML 277
             +L
Sbjct:   386 LL 387

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0045022 "early endosome to late endosome transport" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0043325 "phosphatidylinositol-3,4-bisphosphate binding" evidence=IDA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0008574 "plus-end-directed microtubule motor activity" evidence=IDA

GO:0001919 "regulation of receptor recycling" evidence=IMP

GO:0032801 "receptor catabolic process" evidence=IMP

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0001704 "formation of primary germ layer" evidence=ISS

GO:0006895 "Golgi to endosome transport" evidence=ISS

GO:0007492 "endoderm development" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

UNIPROTKB|F1PJY0 KIF16B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 440 (159.9 bits), Expect = 4.9e-62, Sum P(2) = 4.9e-62
 Identities = 91/122 (74%), Positives = 101/122 (82%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   251 GVRLKEGGNINKSLVTLGNVISALADLSQDAANPLVKKKQVFVPYRDSVLTWLLKDSLGG 310

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct:   311 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKT 370

Query:   276 ML 277
             +L
Sbjct:   371 LL 372

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1PJW5 KIF16B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 440 (159.9 bits), Expect = 5.0e-62, Sum P(2) = 5.0e-62
 Identities = 91/122 (74%), Positives = 101/122 (82%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   266 GVRLKEGGNINKSLVTLGNVISALADLSQDAANPLVKKKQVFVPYRDSVLTWLLKDSLGG 325

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct:   326 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKT 385

Query:   276 ML 277
             +L
Sbjct:   386 LL 387

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|G3X690 KIF16B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 440 (159.9 bits), Expect = 6.0e-62, Sum P(2) = 6.0e-62
 Identities = 91/122 (74%), Positives = 101/122 (82%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   359 GVRLKEGGNINKSLVTLGNVISALADLSQDASNPLVKKKQVFVPYRDSVLTWLLKDSLGG 418

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct:   419 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKT 478

Query:   276 ML 277
             +L
Sbjct:   479 LL 480

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0043325 "phosphatidylinositol-3,4-bisphosphate binding" evidence=IEA

GO:0032801 "receptor catabolic process" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008574 "plus-end-directed microtubule motor activity" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IEA

GO:0007492 "endoderm development" evidence=IEA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0001919 "regulation of receptor recycling" evidence=IEA

GO:0001704 "formation of primary germ layer" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|F1SBI9 KIF16B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 439 (159.6 bits), Expect = 6.4e-62, Sum P(2) = 6.4e-62
 Identities = 91/122 (74%), Positives = 101/122 (82%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   266 GVRLKEGGNINKSLVTLGNVISALADLSQDAANPLVKKKQVFVPYRDSVLTWLLKDSLGG 325

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct:   326 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKM 385

Query:   276 ML 277
             +L
Sbjct:   386 LL 387

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|I3LQ03 KIF16B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 439 (159.6 bits), Expect = 6.6e-62, Sum P(2) = 6.6e-62
 Identities = 91/122 (74%), Positives = 101/122 (82%)

Query:   164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
             G RLKEG +INKSLVTLG+VIS+LA+LS         KK  F+PYRDSVLTWLLKDSLGG
Sbjct:   266 GVRLKEGGNINKSLVTLGNVISALADLSQDAANPLVKKKQVFVPYRDSVLTWLLKDSLGG 325

Query:   216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             NSKTIMIA ISPADVNY ETLSTLRYANRAKNIINKPT+NED N ++IREL  EI +LK 
Sbjct:   326 NSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDANVKLIRELRAEIARLKM 385

Query:   276 ML 277
             +L
Sbjct:   386 LL 387

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NGQ2	KIF1_DICDI	No assigned EC number	0.6869	0.4086	0.0517	yes	N/A
B1AVY7	KI16B_MOUSE	No assigned EC number	0.7459	0.4086	0.0868	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	279
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	3e-56
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	6e-49
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	4e-48
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	4e-47
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	1e-42
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	5e-42
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	3e-41
cd00106	328	cd00106, KISc, Kinesin motor domain	2e-40
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	7e-38
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	4e-35
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	9e-35
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	7e-34
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	6e-33
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	1e-32
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	8e-32
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	1e-30
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	3e-30
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	4e-26
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	6e-26
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	1e-24
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	1e-24
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	3e-24
cd00106	328	cd00106, KISc, Kinesin motor domain	4e-23
cd00106	328	cd00106, KISc, Kinesin motor domain	1e-22
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	5e-20
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	5e-20
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	2e-19
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	2e-19
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	2e-18
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	3e-18
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	6e-18
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	1e-17
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	7e-17
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	1e-16
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	1e-16
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	1e-16
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	1e-16
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	3e-16
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	8e-16
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	8e-16
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	3e-15
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	1e-14
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	1e-14
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	3e-14
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	1e-13
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	2e-13
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	2e-11
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	2e-11
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	5e-10
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	7e-10
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	3e-09
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	3e-09
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	4e-08
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	4e-08

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score =  184 bits (469), Expect = 3e-56
 Identities = 71/96 (73%), Positives = 82/96 (85%), Gaps = 4/96 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST----KKSTFIPYRDSVLTWLLKDSLGGNSKT 219
           GDRLKEG++INKSL TLG VIS+LA+ S+    KKS+FIPYRDSVLTWLLK++LGGNSKT
Sbjct: 261 GDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320

Query: 220 IMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
            MIA ISPAD+NY ETLSTLRYA+RAK I+N   VN
Sbjct: 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score =  169 bits (431), Expect = 6e-49
 Identities = 101/324 (31%), Positives = 153/324 (47%), Gaps = 64/324 (19%)

Query: 10  HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
              + FD     F PS    A+QE V+ +    ++D+   GYN  VFAYGQTGSGKT+TM
Sbjct: 55  EGTYAFDKV---FGPS----ATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTM 107

Query: 70  MGSKA--------------TTDNSPDAHKDFTFDHSYW---------SFDPSSPQFASQE 106
            G++                 ++     KDF    SY             P+      +E
Sbjct: 108 SGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEESLNIRE 166

Query: 107 QVFNDL---GMDVVDAAFEGYNACVFAYGQTG--------------SGKTFTM-MGSKAR 148
                +   G+     + +     +   G+                S   F + + SK +
Sbjct: 167 DSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNK 226

Query: 149 NFGEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELSTKKST 196
             G  +    S+V+             G RLKEGA INKSL+TLG+VI++L     KKS 
Sbjct: 227 VSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL--GDKKKSG 284

Query: 197 FIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
            IPYR+S LT LL+DSLGGN  T +I  ISP+  ++ ET++TL++A+RAK+I NK  VN 
Sbjct: 285 HIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344

Query: 257 DP-NTRIIRELHDEITKLKAMLTS 279
              ++R I E+  ++++ ++ +  
Sbjct: 345 SSDSSREIEEIKFDLSEDRSEIEI 368

Length = 568

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  162 bits (413), Expect = 4e-48
 Identities = 62/93 (66%), Positives = 73/93 (78%), Gaps = 2/93 (2%)

Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
            GDRLKE  +INKSL  LG+VI++LA+ S  KS  IPYRDS LT LL+DSLGGNSKT+MI
Sbjct: 245 EGDRLKEAGNINKSLSALGNVINALAQHS--KSRHIPYRDSKLTRLLQDSLGGNSKTLMI 302

Query: 223 AAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
           A +SP+  N  ETLSTLR+A+RAK I NKP VN
Sbjct: 303 ANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =  159 bits (405), Expect = 4e-47
 Identities = 60/85 (70%), Positives = 71/85 (83%), Gaps = 3/85 (3%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G RLKE A+INKSL  LG+VI++LAE    +S+ IPYRDS LT LL+DSLGGNSKT+MIA
Sbjct: 245 GRRLKEAANINKSLSALGNVINALAE---NQSSHIPYRDSKLTRLLQDSLGGNSKTLMIA 301

Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
            ISP+D NY ETLSTLR+A+RAKNI
Sbjct: 302 NISPSDSNYEETLSTLRFASRAKNI 326

Length = 326

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score =  148 bits (375), Expect = 1e-42
 Identities = 61/85 (71%), Positives = 66/85 (77%), Gaps = 3/85 (3%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           GDRLKE   IN SL  LG+VIS+L +    KST IPYRDS LT LL+DSLGGNSKT+M A
Sbjct: 252 GDRLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNSKTVMCA 308

Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
            I PAD NY ETLSTLRYANRAKNI
Sbjct: 309 NIGPADYNYDETLSTLRYANRAKNI 333

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score =  146 bits (371), Expect = 5e-42
 Identities = 55/85 (64%), Positives = 68/85 (80%), Gaps = 1/85 (1%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G RLKEGA+IN+SL+ LG+ I++L +   KK+  IPYRDS LT LLKDSLGGN KT+MIA
Sbjct: 255 GQRLKEGANINRSLLALGNCINALVDGK-KKNKHIPYRDSKLTRLLKDSLGGNCKTVMIA 313

Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
            ISP+  +Y ET +TL+YANRAKNI
Sbjct: 314 NISPSSSHYEETHNTLKYANRAKNI 338

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score =  145 bits (367), Expect = 3e-41
 Identities = 55/86 (63%), Positives = 69/86 (80%), Gaps = 1/86 (1%)

Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
            GDRLKEG  IN  L+ LG+VIS+L +  +KK + +PYRDS LT LL+DSLGGNS T+MI
Sbjct: 256 TGDRLKEGISINSGLLALGNVISALGD-ESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMI 314

Query: 223 AAISPADVNYSETLSTLRYANRAKNI 248
           A +SPAD N+ ETL+TL+YANRA+NI
Sbjct: 315 ACVSPADSNFEETLNTLKYANRARNI 340

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score =  142 bits (360), Expect = 2e-40
 Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 2/83 (2%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           GDRLKE  +INKSL  LG+VIS+L+    +K   IPYRDS LT LL+DSLGGNSKT+MIA
Sbjct: 248 GDRLKEAKNINKSLSALGNVISALSSG--QKKKHIPYRDSKLTRLLQDSLGGNSKTLMIA 305

Query: 224 AISPADVNYSETLSTLRYANRAK 246
            ISP+  NY ETLSTLR+A+RAK
Sbjct: 306 NISPSSENYDETLSTLRFASRAK 328

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score =  136 bits (344), Expect = 7e-38
 Identities = 56/94 (59%), Positives = 69/94 (73%), Gaps = 4/94 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
             R +E  +IN+SL+TLG VI++L E    KS  IPYR+S LT LL+DSLGG +KT +IA
Sbjct: 263 NKRAREAGNINQSLLTLGRVINALVE----KSPHIPYRESKLTRLLQDSLGGRTKTSIIA 318

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNED 257
            ISPA +N  ETLSTL YA+RAKNI NKP VN+ 
Sbjct: 319 TISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score =  128 bits (324), Expect = 4e-35
 Identities = 48/85 (56%), Positives = 62/85 (72%), Gaps = 4/85 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           GDRLKE   INKSL  LG VIS+L      K + +PYR+S LT+LL+DSLGGNSKT+M  
Sbjct: 246 GDRLKEAQAINKSLSALGDVISALR----SKDSHVPYRNSKLTYLLQDSLGGNSKTLMFV 301

Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
            ISP + N SETL +LR+A+R +++
Sbjct: 302 NISPLESNLSETLCSLRFASRVRSV 326

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score =  132 bits (333), Expect = 9e-35
 Identities = 67/120 (55%), Positives = 85/120 (70%), Gaps = 7/120 (5%)

Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELS-TKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
           AGDRLKE  +IN+SL  LG++I+ LAE+S T K   IPYRDS LT+LL++SLGGN+K  M
Sbjct: 348 AGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAM 407

Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNE----DPN--TRIIRELHDEITKLKA 275
           + AISP+    SET STLR+A RAK I NK  VNE    D N    +IR+L DE+ ++KA
Sbjct: 408 VCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKA 467

Length = 1320

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score =  125 bits (316), Expect = 7e-34
 Identities = 48/85 (56%), Positives = 56/85 (65%), Gaps = 6/85 (7%)

Query: 69  MMGSKATTDNSPDAH------KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE 122
           M G   T  N   A       K F+FDHSYWS D   P +ASQE VF DLG +++D AFE
Sbjct: 27  MPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFE 86

Query: 123 GYNACVFAYGQTGSGKTFTMMGSKA 147
           GYN C+FAYGQTGSGK++TMMG K 
Sbjct: 87  GYNVCLFAYGQTGSGKSYTMMGYKE 111

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score =  123 bits (310), Expect = 6e-33
 Identities = 43/64 (67%), Positives = 51/64 (79%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           K F+FDHSYWS D   P +ASQE VF DLG +++D AFEGYN C+FAYGQTGSGK++TMM
Sbjct: 48  KSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMM 107

Query: 71  GSKA 74
           G K 
Sbjct: 108 GYKE 111

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score =  121 bits (306), Expect = 1e-32
 Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 2/86 (2%)

Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
           AG+R KEG+ INKSL+TLG+VIS L+E   K S  IPYRDS LT +L+ SL GN++T +I
Sbjct: 238 AGERRKEGSFINKSLLTLGTVISKLSE--GKNSGHIPYRDSKLTRILQPSLSGNARTAII 295

Query: 223 AAISPADVNYSETLSTLRYANRAKNI 248
             ISPA  +  ETL+TL++A+RAK +
Sbjct: 296 CTISPASSHVEETLNTLKFASRAKKV 321

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score =  115 bits (290), Expect = 8e-32
 Identities = 73/209 (34%), Positives = 100/209 (47%), Gaps = 46/209 (22%)

Query: 35  VFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWS 94
           VF D+G  ++ +A +GYN C+FAYGQTGSGKT+TM G +                     
Sbjct: 8   VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREG------------------- 47

Query: 95  FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK----TFTMMGSKARNF 150
                P+  +      D G      A     A       + S       F    + A   
Sbjct: 48  -AGIIPRTVTDVIDLMDKG-----NANRTTAATAMNEHSSRSHSVFRIHFGGKNALASAT 101

Query: 151 GEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFI 198
            + K    ++V+             G RL E A+INKSL TLG+VIS+LAE    + + +
Sbjct: 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE----RDSHV 157

Query: 199 PYRDSVLTWLLKDSLGGNSKTIMIAAISP 227
           PYR+S LT LL+DSLGGNS+T+M+A ISP
Sbjct: 158 PYRESKLTRLLQDSLGGNSRTLMVACISP 186

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score =  116 bits (293), Expect = 1e-30
 Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 3/85 (3%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  L+E   INKSL  LG+VI++L +    KST IPYRDS LT +L+DSLGGNS+T +I 
Sbjct: 244 GQTLEEAKKINKSLSALGNVINALTD---GKSTHIPYRDSKLTRILQDSLGGNSRTTLII 300

Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
             SP+  N SETLSTLR+  RAK I
Sbjct: 301 CCSPSSYNESETLSTLRFGARAKTI 325

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score =  115 bits (290), Expect = 3e-30
 Identities = 49/85 (57%), Positives = 64/85 (75%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G RLKE  +INKSL TLG VI +L +++  K   +PYRDS LT+LL+DSLGGN+KT +IA
Sbjct: 253 GVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIA 312

Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
            +SP+   + ETLSTL++A RAK I
Sbjct: 313 NVSPSSKCFGETLSTLKFAQRAKLI 337

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  104 bits (262), Expect = 4e-26
 Identities = 39/92 (42%), Positives = 47/92 (51%), Gaps = 12/92 (13%)

Query: 62  GSGKTFTMMG--SKATTDNSPDA---HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDV 116
            S           K  T  SP      K FTFD     FD +    ASQE VF +    +
Sbjct: 19  KSPSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKV---FDAT----ASQEDVFEETAAPL 71

Query: 117 VDAAFEGYNACVFAYGQTGSGKTFTMMGSKAR 148
           VD+  EGYNA +FAYGQTGSGKT+TM+G+   
Sbjct: 72  VDSVLEGYNATIFAYGQTGSGKTYTMIGTPDS 103

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  103 bits (260), Expect = 6e-26
 Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 7/71 (9%)

Query: 3   TDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
           +  +    K FTFD     FD +    ASQE VF +    +VD+  EGYNA +FAYGQTG
Sbjct: 38  SPKNRQGEKKFTFDKV---FDAT----ASQEDVFEETAAPLVDSVLEGYNATIFAYGQTG 90

Query: 63  SGKTFTMMGSK 73
           SGKT+TM+G+ 
Sbjct: 91  SGKTYTMIGTP 101

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =   99 bits (250), Expect = 1e-24
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 7/69 (10%)

Query: 4  DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
            +    K FTFD     FDP     A+QE V+ +    +V++  EGYN  +FAYGQTGS
Sbjct: 33 ITNKGREKTFTFDRV---FDPE----ATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGS 85

Query: 64 GKTFTMMGS 72
          GKT+TM G 
Sbjct: 86 GKTYTMEGD 94

Length = 326

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =   99 bits (250), Expect = 1e-24
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 7/69 (10%)

Query: 77  DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 136
             +    K FTFD     FDP     A+QE V+ +    +V++  EGYN  +FAYGQTGS
Sbjct: 33  ITNKGREKTFTFDRV---FDPE----ATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGS 85

Query: 137 GKTFTMMGS 145
           GKT+TM G 
Sbjct: 86  GKTYTMEGD 94

Length = 326

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 98.9 bits (247), Expect = 3e-24
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 165 DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 224
              KEGA INKSL+ L   I +LA         +P+R S LT +L+DS  GNSKT+MIA 
Sbjct: 245 QTRKEGAEINKSLLALKECIRALA----SNKAHVPFRGSKLTQVLRDSFIGNSKTVMIAT 300

Query: 225 ISPADVNYSETLSTLRYANRAK 246
           ISP+  +   TL+TLRYA+R K
Sbjct: 301 ISPSASSCEHTLNTLRYADRVK 322

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score = 96.2 bits (240), Expect = 4e-23
 Identities = 37/93 (39%), Positives = 47/93 (50%), Gaps = 12/93 (12%)

Query: 61  TGSGKTFTMMGSKATTDNSPD-----AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMD 115
                  T+  +K  T   P        K FTFDH    FDP+S    +QE V+      
Sbjct: 17  KSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHV---FDPNS----TQEDVYETTAKP 69

Query: 116 VVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAR 148
           +V++  EGYN  +FAYGQTGSGKT+TM GS   
Sbjct: 70  LVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKD 102

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score = 94.6 bits (236), Expect = 1e-22
 Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 7/65 (10%)

Query: 9   AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT 68
             K FTFDH    FDP+S    +QE V+      +V++  EGYN  +FAYGQTGSGKT+T
Sbjct: 43  GPKSFTFDHV---FDPNS----TQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYT 95

Query: 69  MMGSK 73
           M GS 
Sbjct: 96  MFGSP 100

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 87.5 bits (217), Expect = 5e-20
 Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 4/83 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G RLKE A IN SL  L  V+ +L     K    IPYR+S LT LL+DSLGG S+ IM+A
Sbjct: 241 GIRLKESAAINSSLFVLSKVVDAL----NKGLPRIPYRESKLTRLLQDSLGGGSRCIMVA 296

Query: 224 AISPADVNYSETLSTLRYANRAK 246
            I+P    Y +TLSTL +A+R+K
Sbjct: 297 NIAPERSFYQDTLSTLNFASRSK 319

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score = 87.5 bits (217), Expect = 5e-20
 Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  LKE  +INKSL  L  VI++L+E   K  T +PYR+S LT +L+DSLGGN KT+M+A
Sbjct: 255 GQVLKEAKYINKSLSFLEQVINALSE---KARTHVPYRNSKLTHVLRDSLGGNCKTVMLA 311

Query: 224 AISPADVNYSETLSTLRYANRAK 246
            I     N  ETLSTLR+A R  
Sbjct: 312 TIWVEPSNLDETLSTLRFAQRVA 334

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 8/74 (10%)

Query: 71  GSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFA 130
           G            K F+FD     FDP     ASQE VF ++   +V +A +GYN C+FA
Sbjct: 32  GGTIELSKGTGKKKSFSFDRV---FDPD----ASQEDVFEEVSP-LVQSALDGYNVCIFA 83

Query: 131 YGQTGSGKTFTMMG 144
           YGQTGSGKT+TM G
Sbjct: 84  YGQTGSGKTYTMEG 97

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score = 85.7 bits (213), Expect = 2e-19
 Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 8/61 (13%)

Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
          K F+FD     FDP     ASQE VF ++   +V +A +GYN C+FAYGQTGSGKT+TM 
Sbjct: 45 KSFSFDRV---FDPD----ASQEDVFEEVSP-LVQSALDGYNVCIFAYGQTGSGKTYTME 96

Query: 71 G 71
          G
Sbjct: 97 G 97

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 9/73 (12%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           K FTFD+    FDPS+    SQE+V+N     +VD  FEGYNA V AYGQTGSGKT+TM 
Sbjct: 40  KSFTFDYV---FDPST----SQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMG 92

Query: 71  GSKATTDNSPDAH 83
              A T +  +  
Sbjct: 93  T--AFTASEDEEE 103

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 41/99 (41%), Positives = 50/99 (50%), Gaps = 13/99 (13%)

Query: 49  EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
           EG    V      G     T+   KA     P   K FTFD  Y   DP+S Q    E V
Sbjct: 19  EGAPEIVGVDENRG---QVTVHNPKADAKEPP---KVFTFDAVY---DPNSTQ----EDV 65

Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA 147
           +N+    +VD+  EGYN  +FAYGQTG+GKTFTM G + 
Sbjct: 66  YNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE 104

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score = 82.0 bits (203), Expect = 6e-18
 Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 7/59 (11%)

Query: 84  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
           K FTFD+    FDPS+    SQE+V+N     +VD  FEGYNA V AYGQTGSGKT+TM
Sbjct: 40  KSFTFDYV---FDPST----SQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTM 91

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 7/71 (9%)

Query: 4   DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
            ++ +  K FTFD  Y   DP+S Q    E V+N+    +VD+  EGYN  +FAYGQTG+
Sbjct: 41  ADAKEPPKVFTFDAVY---DPNSTQ----EDVYNETARPLVDSVLEGYNGTIFAYGQTGT 93

Query: 64  GKTFTMMGSKA 74
           GKTFTM G + 
Sbjct: 94  GKTFTMEGVRE 104

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 7/76 (9%)

Query: 78  NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
              D  K F+FD     F P++    +QE V+N +   +VD    GYN  +FAYGQTGSG
Sbjct: 37  AGSDDGKTFSFDRV---FPPNT----TQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSG 89

Query: 138 KTFTMMGSKARNFGEG 153
           KT+TM G       +G
Sbjct: 90  KTYTMEGPPGDPELKG 105

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 13 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
          FTFD     F   S    +  +V+  +   VV +A EGYN  +FAYGQT SGKTFTM G 
Sbjct: 42 FTFDRV---FGGES----TNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGD 94

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 86  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           FTFD     F   S    +  +V+  +   VV +A EGYN  +FAYGQT SGKTFTM G 
Sbjct: 42  FTFDRV---FGGES----TNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGD 94

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 5  NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
             D  K F+FD     F P++    +QE V+N +   +VD    GYN  +FAYGQTGSG
Sbjct: 37 AGSDDGKTFSFDRV---FPPNT----TQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSG 89

Query: 65 KTFTMMG 71
          KT+TM G
Sbjct: 90 KTYTMEG 96

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score = 78.3 bits (193), Expect = 1e-16
 Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 9/74 (12%)

Query: 7   PDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 66
           P     FTFDH     D ++    +QE VF  +G  +V+    GYN  +FAYGQTGSGKT
Sbjct: 39  PPRM--FTFDHV---ADSNT----NQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKT 89

Query: 67  FTMMGSKATTDNSP 80
           +TMMG  ++ D SP
Sbjct: 90  YTMMGPSSSDDESP 103

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAE--LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
           G+RLKE  +IN SL+TLG  I  L E  LS   +  +PYRDS LT L ++   G  K  M
Sbjct: 261 GERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARM 320

Query: 222 IAAISPADVNYSETLSTLRYANRAK 246
           I  ++P   +Y ETL  ++++  A+
Sbjct: 321 IVNVNPCASDYDETLHVMKFSAIAQ 345

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 11/70 (15%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
             ++FD     FD +S    +QE+V+ +    +VD    GYNA VFAYG TG+GKT TM+
Sbjct: 54  LKYSFDRV---FDETS----TQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTML 106

Query: 71  GSKATTDNSP 80
           G    TD+ P
Sbjct: 107 G----TDSDP 112

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 7/64 (10%)

Query: 84  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
             ++FD     FD +S    +QE+V+ +    +VD    GYNA VFAYG TG+GKT TM+
Sbjct: 54  LKYSFDRV---FDETS----TQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTML 106

Query: 144 GSKA 147
           G+ +
Sbjct: 107 GTDS 110

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score = 74.4 bits (183), Expect = 3e-15
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 9/65 (13%)

Query: 80  PDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT 139
           P     FTFDH     D ++    +QE VF  +G  +V+    GYN  +FAYGQTGSGKT
Sbjct: 39  PPRM--FTFDHV---ADSNT----NQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKT 89

Query: 140 FTMMG 144
           +TMMG
Sbjct: 90  YTMMG 94

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 7/77 (9%)

Query: 70  MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF 129
              K+           + FD     F PS    A+QE V+ +    ++D+   GYN  VF
Sbjct: 42  TSKKSHVSLEKSKEGTYAFDKV---FGPS----ATQEDVYEETIKPLIDSLLLGYNCTVF 94

Query: 130 AYGQTGSGKTFTMMGSK 146
           AYGQTGSGKT+TM G++
Sbjct: 95  AYGQTGSGKTYTMSGTE 111

Length = 568

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 61  TGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAA 120
                       +   +N  +    F FD     F       ASQE+V+  +   VVD+A
Sbjct: 26  KSVSSNLPKDLVRGVVNNQQEDFS-FKFDGV---FHN-----ASQEEVYETVAKPVVDSA 76

Query: 121 FEGYNACVFAYGQTGSGKTFTMMG 144
            +GYN  +FAYGQTG+GKTFTM G
Sbjct: 77  LDGYNGTIFAYGQTGAGKTFTMTG 100

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 8/59 (13%)

Query: 13  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
           F FD     F       ASQE+V+  +   VVD+A +GYN  +FAYGQTG+GKTFTM G
Sbjct: 50  FKFDGV---FHN-----ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG 100

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 12/77 (15%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           K +TFD     F P     A Q +V++ +   ++D    GYN  +FAYGQTG+GKT+TM 
Sbjct: 48  KTYTFDKV---FGPE----ADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTME 100

Query: 71  G-----SKATTDNSPDA 82
           G       +T + SP A
Sbjct: 101 GDRTDNKGSTWELSPHA 117

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 7/61 (11%)

Query: 84  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
           K +TFD     F P     A Q +V++ +   ++D    GYN  +FAYGQTG+GKT+TM 
Sbjct: 48  KTYTFDKV---FGPE----ADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTME 100

Query: 144 G 144
           G
Sbjct: 101 G 101

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 13  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
           F FD+    FD +     + E+V+      ++   FEG  A  FAYGQTGSGKT+TM+G 
Sbjct: 53  FRFDYV---FDEAV----TNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGD 105

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 86  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           F FD+    FD +     + E+V+      ++   FEG  A  FAYGQTGSGKT+TM+G 
Sbjct: 53  FRFDYV---FDEAV----TNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGD 105

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 69  MMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACV 128
           M+  K + D+     + FTFD      DP S    +QE +F  +G  +V+    G+N+ V
Sbjct: 117 MIVQKMSNDSLTINGQTFTFDSIA---DPES----TQEDIFQLVGAPLVENCLAGFNSSV 169

Query: 129 FAYGQTGSGKTFTMMG 144
           FAYGQTGSGKT+TM G
Sbjct: 170 FAYGQTGSGKTYTMWG 185

Length = 1320

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 59.2 bits (143), Expect = 7e-10
 Identities = 24/52 (46%), Positives = 36/52 (69%)

Query: 20  WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
           ++FD  +   ++QE +F  +G  +V+    G+N+ VFAYGQTGSGKT+TM G
Sbjct: 134 FTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWG 185

Length = 1320

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 22  FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 72
           FD       +QE +F+     +V     G NA VFAYG TG+GKT TM+G 
Sbjct: 51  FDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGD 101

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 95  FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           FD       +QE +F+     +V     G NA VFAYG TG+GKT TM+G 
Sbjct: 51  FDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGD 101

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 5   NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
           N       F+F   +       P   +Q++ F    + +V    +G N+ +F YG T SG
Sbjct: 49  NGGQKETKFSFSKVF------GPN-TTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSG 101

Query: 65  KTFTMMGSK 73
           KT+TM GS 
Sbjct: 102 KTYTMQGSP 110

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 78  NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
           N       F+F   +       P   +Q++ F    + +V    +G N+ +F YG T SG
Sbjct: 49  NGGQKETKFSFSKVF------GPN-TTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSG 101

Query: 138 KTFTMMGSK 146
           KT+TM GS 
Sbjct: 102 KTYTMQGSP 110

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
KOG0245|consensus	1221		100.0
KOG4280|consensus	574		100.0
KOG0243|consensus	1041		100.0
PLN03188	1320	kinesin-12 family protein; Provisional	100.0
KOG0242|consensus	675		100.0
KOG0241|consensus	1714		100.0
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
KOG0240|consensus	607		100.0
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
KOG0239|consensus	670		100.0
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
KOG0244|consensus	913		100.0
KOG0246|consensus	676		100.0
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	100.0
KOG0247|consensus	809		100.0
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	100.0
KOG0245|consensus	1221		97.93
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.78
KOG4280|consensus	574		95.58
PRK06893	229	DNA replication initiation factor; Validated	95.35
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	95.3
KOG0241|consensus	1714		95.12
PRK06620	214	hypothetical protein; Validated	94.97
PRK12377	248	putative replication protein; Provisional	94.57
PRK09087	226	hypothetical protein; Validated	94.43
PRK08084	235	DNA replication initiation factor; Provisional	94.16
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	94.12
PRK05642	234	DNA replication initiation factor; Validated	94.04
PRK14086	617	dnaA chromosomal replication initiation protein; P	94.03
PRK08116	268	hypothetical protein; Validated	93.99
PRK06526	254	transposase; Provisional	93.75
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	93.68
PRK14088	440	dnaA chromosomal replication initiation protein; P	93.53
PRK07952	244	DNA replication protein DnaC; Validated	93.5
PF13245	76	AAA_19: Part of AAA domain	93.42
PRK08181	269	transposase; Validated	92.98
PRK08903	227	DnaA regulatory inactivator Hda; Validated	92.87
PRK06835	329	DNA replication protein DnaC; Validated	92.71
PRK08727	233	hypothetical protein; Validated	92.49
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	92.38
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	92.37
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	92.29
PRK08939	306	primosomal protein DnaI; Reviewed	92.26
PRK00411	394	cdc6 cell division control protein 6; Reviewed	92.18
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	92.13
PRK00149	450	dnaA chromosomal replication initiation protein; R	92.02
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	91.91
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	91.83
COG5008	375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	91.81
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	91.58
PRK10436	462	hypothetical protein; Provisional	91.55
COG1484	254	DnaC DNA replication protein [DNA replication, rec	91.42
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	91.2
COG0593	408	DnaA ATPase involved in DNA replication initiation	91.08
PRK14087	450	dnaA chromosomal replication initiation protein; P	90.89
TIGR02533	486	type_II_gspE general secretory pathway protein E.	90.78
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	90.47
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	90.11
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	89.99
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	89.99
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	89.73
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	89.71
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	89.66
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	89.46
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	89.21
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	89.14
KOG0989|consensus	346		89.12
KOG0243|consensus	1041		89.1
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	89.05
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	89.04
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	89.03
PRK09183	259	transposase/IS protein; Provisional	88.94
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	88.86
smart00382	148	AAA ATPases associated with a variety of cellular	88.54
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	88.53
PRK06921	266	hypothetical protein; Provisional	88.48
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	88.28
PRK12422	445	chromosomal replication initiation protein; Provis	88.08
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	87.94
PF12846	304	AAA_10: AAA-like domain	87.75
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	87.63
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	87.49
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	87.18
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	87.03
PHA00729	226	NTP-binding motif containing protein	86.78
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	86.65
KOG0242|consensus	675		86.28
PRK12402	337	replication factor C small subunit 2; Reviewed	86.22
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	86.2
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	86.02
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	85.98
PF00004	132	AAA: ATPase family associated with various cellula	85.61
PLN03188	1320	kinesin-12 family protein; Provisional	85.48
PF13479	213	AAA_24: AAA domain	85.43
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	85.35
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	85.29
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	85.25
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	84.81
PTZ00112	1164	origin recognition complex 1 protein; Provisional	84.78
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	84.71
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	84.68
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	84.43
PF00580	315	UvrD-helicase: UvrD/REP helicase N-terminal domain	84.18
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	84.18
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	84.15
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	84.09
PRK13833	323	conjugal transfer protein TrbB; Provisional	84.02
KOG0239|consensus	670		83.88
PRK06547	172	hypothetical protein; Provisional	83.59
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	83.43
PRK03992	389	proteasome-activating nucleotidase; Provisional	83.14
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	83.05
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	83.0
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	82.87
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	82.44
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	82.38
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	82.25
smart00487	201	DEXDc DEAD-like helicases superfamily.	82.06
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	81.97
COG2256	436	MGS1 ATPase related to the helicase subunit of the	81.85
PHA02544	316	44 clamp loader, small subunit; Provisional	81.74
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	81.63
PLN03025	319	replication factor C subunit; Provisional	81.5
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	81.43
KOG1803|consensus	649		81.38
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	81.37
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	81.24
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	81.13
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	81.08
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	80.68
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	80.63
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	80.49
PRK13851	344	type IV secretion system protein VirB11; Provision	80.46
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	80.23
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	80.13
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	80.13
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	80.12
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	80.07
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	80.05

>KOG0245|consensus

Probab=100.00  E-value=2e-65  Score=475.34  Aligned_cols=262  Identities=52%  Similarity=0.795  Sum_probs=228.0

Q ss_pred             CCCCCCCcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC--CCCCCCC
Q psy37             3 TDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK--ATTDNSP   80 (279)
Q Consensus         3 ~~~~~~~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~--~~~G~~~   80 (279)
                      .|.+++...+|+||++||+||..=+--++|.+||+.++.|+++.+++|||+||||||||||||||||+|-+  +++||||
T Consensus        39 ~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIP  118 (1221)
T KOG0245|consen   39 NPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIP  118 (1221)
T ss_pred             cCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchh
Confidence            46677888889999999999998888899999999999999999999999999999999999999999987  8899999


Q ss_pred             CccccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccc-cCCCceEEEe----------------
Q psy37            81 DAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQ-TGSGKTFTMM----------------  143 (279)
Q Consensus        81 ~~~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~-~~~~~~~~~~----------------  143 (279)
                      +.+.+| |..+.......   ..          +.+-+|++|||+|.|.|||+ +.+.....++                
T Consensus       119 rlCEeL-F~ri~~nq~~~---~s----------y~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~a  184 (1221)
T KOG0245|consen  119 RLCEEL-FSRIADNQSQQ---MS----------YSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLA  184 (1221)
T ss_pred             HHHHHH-HHHHhhccccc---ce----------EEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcc
Confidence            999999 98876433322   22          45555899999999999987 4444333333                


Q ss_pred             -------------ccccc-------------------------------------------cccCccccchhhhhhhhhh
Q psy37           144 -------------GSKAR-------------------------------------------NFGEGKDCVCSIVEAGDRL  167 (279)
Q Consensus       144 -------------g~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~  167 (279)
                                   |++.|                                           ...+|+|+.......|.|+
T Consensus       185 V~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RL  264 (1221)
T KOG0245|consen  185 VTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRL  264 (1221)
T ss_pred             cccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccch
Confidence                         11111                                           1126777777777899999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhC---CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHH
Q psy37           168 KEGAHINKSLVTLGSVISSLAELST---KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANR  244 (279)
Q Consensus       168 ~e~~~in~Sl~~L~~~i~~l~~~~~---~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~  244 (279)
                      +|+.+||+||++||+||.||++.+.   ++..+||||||.||+||++.||||+||+||++|||...+|+|||+|||||.|
T Consensus       265 KEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdR  344 (1221)
T KOG0245|consen  265 KEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADR  344 (1221)
T ss_pred             hcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhH
Confidence            9999999999999999999999774   5567899999999999999999999999999999999999999999999999


Q ss_pred             hccccCcccccCCccHHHHHHHHHHHHHHHHHhc
Q psy37           245 AKNIINKPTVNEDPNTRIIRELHDEITKLKAMLT  278 (279)
Q Consensus       245 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~Lk~~l~  278 (279)
                      +|+|+|++++|++++..+|++|++|+.+||++|.
T Consensus       345 AK~Iv~~avVNEdpnaKLIRELreEv~rLksll~  378 (1221)
T KOG0245|consen  345 AKQIVNNAVVNEDPNAKLIRELREEVARLKSLLR  378 (1221)
T ss_pred             hhhhhccceeCCCccHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999874

>KOG4280|consensus

Probab=100.00  E-value=9.8e-64  Score=452.24  Aligned_cols=241  Identities=44%  Similarity=0.623  Sum_probs=204.0

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC-CCCCCCCCCccccceecccccccCCC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS-KATTDNSPDAHKDFTFDHSYWSFDPS   98 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~-~~~~G~~~~~~~~l~f~~~~~~~~~~   98 (279)
                      |.||.||+++++|++||..++.|+|++|++|||+||||||||||||||||.|+ .+..||||+++.+| |.++....+..
T Consensus        54 ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~L-F~~I~~~~~~~  132 (574)
T KOG4280|consen   54 FTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHL-FRHIDERKEKT  132 (574)
T ss_pred             ceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHH-HHHHHhccccc
Confidence            77778889999999999999999999999999999999999999999999999 66799999999999 99987654332


Q ss_pred             CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEe-----------------------------ccccc-
Q psy37            99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM-----------------------------GSKAR-  148 (279)
Q Consensus        99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~-----------------------------g~~~~-  148 (279)
                        .            +.+.+|++|+||+.|+||+.+...+...+.                             |..+| 
T Consensus       133 --~------------f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~  198 (574)
T KOG4280|consen  133 --R------------FLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRR  198 (574)
T ss_pred             --e------------EEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcc
Confidence              1            334447777777777777765542111111                             11111 


Q ss_pred             -----------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37           149 -----------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL  187 (279)
Q Consensus       149 -----------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l  187 (279)
                                                               ...+|+++.......|++++|+.+||+||++||+||.+|
T Consensus       199 vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aL  278 (574)
T KOG4280|consen  199 VGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISAL  278 (574)
T ss_pred             hhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHH
Confidence                                                     111455555555578999999999999999999999999


Q ss_pred             HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHHHHH
Q psy37           188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH  267 (279)
Q Consensus       188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~~l~  267 (279)
                      ++   ..+.||||||||||+||+|+|||||+|+||+||+|+..++.||++||+||+|++.|+|.|++|.++....++.|+
T Consensus       279 vd---~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq  355 (574)
T KOG4280|consen  279 VD---GSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQ  355 (574)
T ss_pred             hc---cccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHH
Confidence            97   444499999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy37           268 DEITKLKAMLT  278 (279)
Q Consensus       268 ~~~~~Lk~~l~  278 (279)
                      ++|..||.+|.
T Consensus       356 ~ei~~Lk~~l~  366 (574)
T KOG4280|consen  356 EEIERLKKELD  366 (574)
T ss_pred             HHHHHHHHhhc
Confidence            99999999885

>KOG0243|consensus

Probab=100.00  E-value=1.7e-60  Score=448.97  Aligned_cols=238  Identities=39%  Similarity=0.537  Sum_probs=203.5

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC--------CCCCCCCCCCccccceeccc
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG--------SKATTDNSPDAHKDFTFDHS   91 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G--------~~~~~G~~~~~~~~l~f~~~   91 (279)
                      |.||+||+|++.|++||+.++.|+|+.|+.|||||||||||||+||||||.|        .+...|+|||++.+| |+..
T Consensus        97 ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~I-Fd~L  175 (1041)
T KOG0243|consen   97 FTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQI-FDTL  175 (1041)
T ss_pred             eecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHH-HHHH
Confidence            7999999999999999999999999999999999999999999999999999        567899999999999 9877


Q ss_pred             ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--e---------------EEEe-----------
Q psy37            92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--T---------------FTMM-----------  143 (279)
Q Consensus        92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--~---------------~~~~-----------  143 (279)
                      .... ..               |.+.++++|.|||.++|||.+....  .               ..+.           
T Consensus       176 e~~~-~E---------------YsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~  239 (1041)
T KOG0243|consen  176 EAQG-AE---------------YSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNAD  239 (1041)
T ss_pred             HhcC-Ce---------------EEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchh
Confidence            5433 11               4455588888888888888755432  1               1111           


Q ss_pred             --------------------------------------------------ccccccccCccccchhhhhhhhhhhhhhHH
Q psy37           144 --------------------------------------------------GSKARNFGEGKDCVCSIVEAGDRLKEGAHI  173 (279)
Q Consensus       144 --------------------------------------------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~i  173 (279)
                                                                        |..+....+|+|.+.+-+..+.|-+|++.|
T Consensus       240 ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~I  319 (1041)
T KOG0243|consen  240 EIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEI  319 (1041)
T ss_pred             HHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhh
Confidence                                                              111112226777776666777899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37           174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT  253 (279)
Q Consensus       174 n~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~  253 (279)
                      |+||.+||+||.||++    +..|||||+|||||||+|+|||..+|+||+||||+..+.+||++||.||.||+.|+|+|.
T Consensus       320 NqSLLTLGRVInALVe----~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPe  395 (1041)
T KOG0243|consen  320 NQSLLTLGRVINALVE----HSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPE  395 (1041)
T ss_pred             hHHHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCc
Confidence            9999999999999996    888999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccH-HHHHHHHHHHHHHHHHhc
Q psy37           254 VNEDPNT-RIIRELHDEITKLKAMLT  278 (279)
Q Consensus       254 ~~~~~~~-~~~~~l~~~~~~Lk~~l~  278 (279)
                      +|+.-.. ..++.|-.||++||+.|.
T Consensus       396 vNQkl~K~~llKd~~~EIerLK~dl~  421 (1041)
T KOG0243|consen  396 VNQKLMKKTLLKDLYEEIERLKRDLA  421 (1041)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9986654 567999999999999874

>PLN03188 kinesin-12 family protein; Provisional

Probab=100.00  E-value=2.5e-57  Score=431.89  Aligned_cols=255  Identities=39%  Similarity=0.534  Sum_probs=202.9

Q ss_pred             eeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC----------CCCCCCCC
Q psy37            12 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK----------ATTDNSPD   81 (279)
Q Consensus        12 ~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~----------~~~G~~~~   81 (279)
                      ....+...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.          .++||+|+
T Consensus       126 sl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPR  205 (1320)
T PLN03188        126 SLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPR  205 (1320)
T ss_pred             eEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHH
Confidence            34455667999999999999999999999999999999999999999999999999999963          56899999


Q ss_pred             ccccceecccccccC-CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEe--------
Q psy37            82 AHKDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMM--------  143 (279)
Q Consensus        82 ~~~~l~f~~~~~~~~-~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~--------  143 (279)
                      ++++| |..+..... ....          ...+.+..+++|+|++.|+|||.+.....         ..+.        
T Consensus       206 aledL-F~~I~e~q~k~~d~----------~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~  274 (1320)
T PLN03188        206 VFERL-FARINEEQIKHADR----------QLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVK  274 (1320)
T ss_pred             HHHHH-HHHHHhhhhhcccc----------ccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCC
Confidence            99999 987643211 0001          11245666999999999999997542111         1111        


Q ss_pred             -----------ccccc-------------------------------------------cccCccccchhhhhhhhhhhh
Q psy37           144 -----------GSKAR-------------------------------------------NFGEGKDCVCSIVEAGDRLKE  169 (279)
Q Consensus       144 -----------g~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~e  169 (279)
                                 |...|                                           ...+|+|++......|.+++|
T Consensus       275 S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkE  354 (1320)
T PLN03188        275 TMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKE  354 (1320)
T ss_pred             CHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHH
Confidence                       11111                                           111455555445567889999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhh-CCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           170 GAHINKSLVTLGSVISSLAELS-TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       170 ~~~in~Sl~~L~~~i~~l~~~~-~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      +..||+||++|++||.+|++.. ..+..|||||+||||+||+|+|||+++|+||+||||...++.||++||+||+++++|
T Consensus       355 A~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~I  434 (1320)
T PLN03188        355 AGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAI  434 (1320)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhc
Confidence            9999999999999999998743 345679999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCcc------HHHHHHHHHHHHHHHHHh
Q psy37           249 INKPTVNEDPN------TRIIRELHDEITKLKAML  277 (279)
Q Consensus       249 ~~~~~~~~~~~------~~~~~~l~~~~~~Lk~~l  277 (279)
                      +|.|++|....      ...+++|+.||.+||...
T Consensus       435 KNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~  469 (1320)
T PLN03188        435 KNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANG  469 (1320)
T ss_pred             CccceeccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999997543      336677777887777654

>KOG0242|consensus

Probab=100.00  E-value=3.9e-57  Score=423.96  Aligned_cols=243  Identities=40%  Similarity=0.554  Sum_probs=204.2

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      .-|.||+||+++++|++||+..++|+|+.|++|+|++|||||||||||||||.|..++||++|.++++| |..+....+.
T Consensus        53 ~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~di-f~~I~~~~~r  131 (675)
T KOG0242|consen   53 EKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDI-FEKIDKSGER  131 (675)
T ss_pred             cceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHH-HHHHHhcCCc
Confidence            568999999999999999999999999999999999999999999999999999999999999999999 9988644322


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEec-------------------c----
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMG-------------------S----  145 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g-------------------~----  145 (279)
                      .               +.+..|++|||||.|+||+.++.+..         .++.|                   .    
T Consensus       132 ~---------------f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~  196 (675)
T KOG0242|consen  132 E---------------FSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRT  196 (675)
T ss_pred             e---------------eEEEEEEEEEeccccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCc
Confidence            1               55666999999999999997654321         11111                   1    


Q ss_pred             ----------------------------------ccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy37           146 ----------------------------------KARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELS  191 (279)
Q Consensus       146 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~  191 (279)
                                                        ..-...+|+|+..+..+.|.|+.|+++||+||++|++||.+|.+. 
T Consensus       197 ~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~-  275 (675)
T KOG0242|consen  197 TGETNLNEQSSRSHAILRITVESRGREASSRVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEG-  275 (675)
T ss_pred             ccccccccccchhhheeeEEEEeccccccchhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccc-
Confidence                                              111222566666667788899999999999999999999999862 


Q ss_pred             CCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHH-HHHHHHHHH
Q psy37           192 TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEI  270 (279)
Q Consensus       192 ~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~-~~~~l~~~~  270 (279)
                       ....|||||||||||||+++|||+++|++||||+|...+++||.+||+||+++++|++.+.+|.-..+. +++.+.+++
T Consensus       276 -~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i  354 (675)
T KOG0242|consen  276 -KRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREI  354 (675)
T ss_pred             -cccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHH
Confidence             235599999999999999999999999999999999999999999999999999999999999755543 344556888


Q ss_pred             HHHHHHhc
Q psy37           271 TKLKAMLT  278 (279)
Q Consensus       271 ~~Lk~~l~  278 (279)
                      ..|+++++
T Consensus       355 ~~l~~e~~  362 (675)
T KOG0242|consen  355 AELEAELE  362 (675)
T ss_pred             HHHHHHHH
Confidence            88887775

>KOG0241|consensus

Probab=100.00  E-value=1.2e-55  Score=405.65  Aligned_cols=258  Identities=50%  Similarity=0.806  Sum_probs=220.0

Q ss_pred             CCcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccce
Q psy37             8 DAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFT   87 (279)
Q Consensus         8 ~~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~   87 (279)
                      +.-++|.|||-||+.|.--.--+.|+.||+.++..+++++++|||+||||||||||||||||.|..++|||||+.+..| 
T Consensus        50 k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~l-  128 (1714)
T KOG0241|consen   50 KGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESL-  128 (1714)
T ss_pred             CCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHH-
Confidence            4568899999999888766666899999999999999999999999999999999999999999999999999999999 


Q ss_pred             ecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce-EEEe-----------------------
Q psy37            88 FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT-FTMM-----------------------  143 (279)
Q Consensus        88 f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~-~~~~-----------------------  143 (279)
                      |..+.....+.-.             +.+-.+++|+|++.++||+++..+.. ..+.                       
T Consensus       129 Fe~I~k~~n~~~t-------------fkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdI  195 (1714)
T KOG0241|consen  129 FERIDKESNPSQT-------------FKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDI  195 (1714)
T ss_pred             HHHHHhccCCCce-------------EEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHH
Confidence            9988754432211             44444899999999999987554322 2111                       


Q ss_pred             ------ccccccc-------------------------------------------cCccccchhhhhhhhhhhhhhHHH
Q psy37           144 ------GSKARNF-------------------------------------------GEGKDCVCSIVEAGDRLKEGAHIN  174 (279)
Q Consensus       144 ------g~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~e~~~in  174 (279)
                            |.+.+.+                                           .+++++.......|.+++|+.+||
T Consensus       196 d~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNin  275 (1714)
T KOG0241|consen  196 DSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNIN  275 (1714)
T ss_pred             HHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcc
Confidence                  1111111                                           145566666668899999999999


Q ss_pred             HHHHHHHHHHHHHHhhhC--CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcc
Q psy37           175 KSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKP  252 (279)
Q Consensus       175 ~Sl~~L~~~i~~l~~~~~--~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~  252 (279)
                      +||++|+.||.+|++...  .+.+.||||||.||.||+|.|||||+|+||+||||...+|+||++|||||.++|+|+|..
T Consensus       276 kSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~a  355 (1714)
T KOG0241|consen  276 KSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHA  355 (1714)
T ss_pred             hhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccc
Confidence            999999999999998653  347799999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccHHHHHHHHHHHHHHHHHhcC
Q psy37           253 TVNEDPNTRIIRELHDEITKLKAMLTS  279 (279)
Q Consensus       253 ~~~~~~~~~~~~~l~~~~~~Lk~~l~~  279 (279)
                      ++|.+|+...+++||+|++.|+.+|++
T Consensus       356 vvNedpnarvirElReEve~lr~qL~~  382 (1714)
T KOG0241|consen  356 VVNEDPNARVIRELREEVEKLREQLEQ  382 (1714)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999874

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=100.00  E-value=1.9e-55  Score=388.22  Aligned_cols=220  Identities=38%  Similarity=0.530  Sum_probs=178.8

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC--------CCCCCCCccccceec
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA--------TTDNSPDAHKDFTFD   89 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~--------~~G~~~~~~~~l~f~   89 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..        .+|++|+++++| |.
T Consensus        41 ~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~L-f~  119 (337)
T cd01373          41 RMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYL-FS  119 (337)
T ss_pred             cEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHH-HH
Confidence            468999999999999999999999999999999999999999999999999999763        589999999999 98


Q ss_pred             ccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE---------EEecc---------------
Q psy37            90 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF---------TMMGS---------------  145 (279)
Q Consensus        90 ~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~---------~~~g~---------------  145 (279)
                      .+.........          ...+.+..+++|+|++.++|||.+......         .+.|.               
T Consensus       120 ~i~~~~~~~~~----------~~~~~v~~S~~EIyne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll  189 (337)
T cd01373         120 LIQREEEKRGD----------GLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVL  189 (337)
T ss_pred             HHHhhhhhccc----------CceEEEEEEEEeecCCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHH
Confidence            76533221111          112455669999999999999965432111         11111               


Q ss_pred             ----cccc-----------------------------------------ccCccccchhhhhhhhhhhhhhHHHHHHHHH
Q psy37           146 ----KARN-----------------------------------------FGEGKDCVCSIVEAGDRLKEGAHINKSLVTL  180 (279)
Q Consensus       146 ----~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L  180 (279)
                          ..|.                                         ..+|+|+.......|.+++|+..||+||++|
T Consensus       190 ~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L  269 (337)
T cd01373         190 LKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTL  269 (337)
T ss_pred             HHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHH
Confidence                1110                                         1134444444446688899999999999999


Q ss_pred             HHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           181 GSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       181 ~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      ++||.+|++.+..+..|||||+||||+||+|+|||+++|+||+||+|+..+++||++||+||+++++|
T Consensus       270 ~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I  337 (337)
T cd01373         270 GHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI  337 (337)
T ss_pred             HHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence            99999999766566899999999999999999999999999999999999999999999999999976

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=100.00  E-value=2.3e-54  Score=381.59  Aligned_cols=216  Identities=44%  Similarity=0.611  Sum_probs=178.4

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD   96 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~   96 (279)
                      ...|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..++|++|+++++| |..+....+
T Consensus        53 ~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~L-F~~i~~~~~  131 (338)
T cd01370          53 ELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDL-FDKIEERKD  131 (338)
T ss_pred             ceEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHH-HHhhhhccc
Confidence            3458999999999999999999999999999999999999999999999999999999999999999999 988754331


Q ss_pred             CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE---------EEe-------------------ccccc
Q psy37            97 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF---------TMM-------------------GSKAR  148 (279)
Q Consensus        97 ~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~---------~~~-------------------g~~~~  148 (279)
                                    ...+.+..+++|+|+++++||+.+......         .+.                   |...|
T Consensus       132 --------------~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R  197 (338)
T cd01370         132 --------------DKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNR  197 (338)
T ss_pred             --------------CceEEEEEEEEEEECCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhc
Confidence                          112456669999999999999975321111         111                   00010


Q ss_pred             ------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy37           149 ------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISS  186 (279)
Q Consensus       149 ------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~  186 (279)
                                                                ...+|+|+.......+.+++|+..||+||++|++||.+
T Consensus       198 ~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~  277 (338)
T cd01370         198 TQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINA  277 (338)
T ss_pred             ccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHH
Confidence                                                      01144555444456778899999999999999999999


Q ss_pred             HHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       187 l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      |++.+. +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++|+|
T Consensus       278 L~~~~~-~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I  338 (338)
T cd01370         278 LVDGKK-KNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI  338 (338)
T ss_pred             HHhccC-CCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence            996322 3489999999999999999999999999999999999999999999999999986

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=100.00  E-value=1.3e-53  Score=379.79  Aligned_cols=233  Identities=54%  Similarity=0.835  Sum_probs=185.1

Q ss_pred             CcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCcccccee
Q psy37             9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTF   88 (279)
Q Consensus         9 ~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f   88 (279)
                      ..+.|.||++|+.+|...+..++|++||+.++.|+|+++++|+|+||||||||||||||||+|+..++|++|+++++| |
T Consensus        46 ~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~L-f  124 (356)
T cd01365          46 KPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEEL-F  124 (356)
T ss_pred             CceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHH-H
Confidence            445555555555555554555999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             cccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC--CceEE----------Eec------------
Q psy37            89 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS--GKTFT----------MMG------------  144 (279)
Q Consensus        89 ~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~--~~~~~----------~~g------------  144 (279)
                      +........             ...+.+..+++|+|+++++||+....  .....          +.|            
T Consensus       125 ~~~~~~~~~-------------~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~  191 (356)
T cd01365         125 QRIESKKEQ-------------NLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDI  191 (356)
T ss_pred             HHHhhcccc-------------CceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHH
Confidence            877543321             11144556999999999999998663  11111          111            


Q ss_pred             -------ccccc--------cc-----------------------------------CccccchhhhhhhhhhhhhhHHH
Q psy37           145 -------SKARN--------FG-----------------------------------EGKDCVCSIVEAGDRLKEGAHIN  174 (279)
Q Consensus       145 -------~~~~~--------~~-----------------------------------~~~~~~~~~~~~~~~~~e~~~in  174 (279)
                             ...|.        .+                                   +|+|+.......+.+++|+..||
T Consensus       192 ~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN  271 (356)
T cd01365         192 QNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNIN  271 (356)
T ss_pred             HHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHh
Confidence                   11110        01                                   23333333335677889999999


Q ss_pred             HHHHHHHHHHHHHHhhhC----CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccC
Q psy37           175 KSLVTLGSVISSLAELST----KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIIN  250 (279)
Q Consensus       175 ~Sl~~L~~~i~~l~~~~~----~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~  250 (279)
                      +||++|++||.+|++.+.    .+..|||||+||||++|+++|||+++++||+||+|...+++||++||+||+++++|++
T Consensus       272 ~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~  351 (356)
T cd01365         272 KSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVN  351 (356)
T ss_pred             HHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccC
Confidence            999999999999987542    3578999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q psy37           251 KPTVN  255 (279)
Q Consensus       251 ~~~~~  255 (279)
                      .|++|
T Consensus       352 ~~~~~  356 (356)
T cd01365         352 VAVVN  356 (356)
T ss_pred             ccccC
Confidence            99876

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>KOG0240|consensus

Probab=100.00  E-value=3e-54  Score=381.72  Aligned_cols=224  Identities=40%  Similarity=0.501  Sum_probs=187.9

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceecccccc
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYWS   94 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~~   94 (279)
                      ..|.||+||.|+++|++||+.++.|+|++|+.|||+||||||||||||||||.|...   ..|++||++++| |..++..
T Consensus        49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~di-F~~Iys~  127 (607)
T KOG0240|consen   49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDI-FDHIYSM  127 (607)
T ss_pred             ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHH-HHHHhcC
Confidence            568999999999999999999999999999999999999999999999999999876   469999999999 9998754


Q ss_pred             cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc---------eEEEe----------------------
Q psy37            95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK---------TFTMM----------------------  143 (279)
Q Consensus        95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~---------~~~~~----------------------  143 (279)
                      ...              +.+.+.++++|+|.++++||+.+....         ...+.                      
T Consensus       128 ~~n--------------~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~  193 (607)
T KOG0240|consen  128 EEN--------------LEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKS  193 (607)
T ss_pred             ccc--------------ceEEEEEEeehhhhhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccc
Confidence            332              113344477888888888877632211         01111                      


Q ss_pred             ------------------------------------ccccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37           144 ------------------------------------GSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL  187 (279)
Q Consensus       144 ------------------------------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l  187 (279)
                                                          |.......+|++.+......|..+.|+++||+||.+|++||++|
T Consensus       194 nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aL  273 (607)
T KOG0240|consen  194 NRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINAL  273 (607)
T ss_pred             cchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHH
Confidence                                                11111222677777777788999999999999999999999999


Q ss_pred             HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCcc
Q psy37           188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPN  259 (279)
Q Consensus       188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~  259 (279)
                      ++   ++..|||||||||||+|+|+||||++|.+|+|++|+.-+-.||.+||+|+.|++.|+|.+.+|..-.
T Consensus       274 a~---g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~  342 (607)
T KOG0240|consen  274 AE---GPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELT  342 (607)
T ss_pred             hc---CCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhh
Confidence            97   6689999999999999999999999999999999999999999999999999999999999996443

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=100.00  E-value=1.6e-53  Score=376.87  Aligned_cols=210  Identities=30%  Similarity=0.474  Sum_probs=175.7

Q ss_pred             ccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceeccccccc
Q psy37            16 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSF   95 (279)
Q Consensus        16 d~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~   95 (279)
                      ....|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..++|++|+++++| |..+..  
T Consensus        53 ~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~l-F~~~~~--  129 (345)
T cd01368          53 KETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVI-FNSIGG--  129 (345)
T ss_pred             CceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHH-HHHHHh--
Confidence            34468999999999999999999999999999999999999999999999999999999999999999999 887643  


Q ss_pred             CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc-----eEE----------Ee-----------------
Q psy37            96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK-----TFT----------MM-----------------  143 (279)
Q Consensus        96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~-----~~~----------~~-----------------  143 (279)
                                        +.+..+++|+|+++|+|||.+....     ...          +.                 
T Consensus       130 ------------------~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l  191 (345)
T cd01368         130 ------------------YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVF  191 (345)
T ss_pred             ------------------eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHH
Confidence                              4455599999999999999754321     111          11                 


Q ss_pred             --cccccc-----------------------------------------------ccCccccchhhhhhhhhhhhhhHHH
Q psy37           144 --GSKARN-----------------------------------------------FGEGKDCVCSIVEAGDRLKEGAHIN  174 (279)
Q Consensus       144 --g~~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~e~~~in  174 (279)
                        |...|.                                               ..+|+|+.......|.+++|+..||
T Consensus       192 ~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN  271 (345)
T cd01368         192 KRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNIN  271 (345)
T ss_pred             HHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhh
Confidence              111110                                               1134444444446678899999999


Q ss_pred             HHHHHHHHHHHHHHhhhCC--CCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37           175 KSLVTLGSVISSLAELSTK--KSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK  246 (279)
Q Consensus       175 ~Sl~~L~~~i~~l~~~~~~--~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~  246 (279)
                      +||++|++||.+|++.+..  +..|||||+||||+||+|+|+|+++|+||+||+|+..+++||++||+||++++
T Consensus       272 ~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~  345 (345)
T cd01368         272 TSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ  345 (345)
T ss_pred             HHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            9999999999999975432  58899999999999999999999999999999999999999999999999985

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=100.00  E-value=4.8e-53  Score=375.95  Aligned_cols=220  Identities=42%  Similarity=0.611  Sum_probs=181.1

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC-----------CCCCCCCcccc
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA-----------TTDNSPDAHKD   85 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~-----------~~G~~~~~~~~   85 (279)
                      ...|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+..           .+|++|+++++
T Consensus        47 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~  126 (352)
T cd01364          47 TKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQ  126 (352)
T ss_pred             ceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHH
Confidence            3468999999999999999999999999999999999999999999999999999853           48999999999


Q ss_pred             ceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC--CceE------------EEec-------
Q psy37            86 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS--GKTF------------TMMG-------  144 (279)
Q Consensus        86 l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~--~~~~------------~~~g-------  144 (279)
                      | |...... .               ..+.+..+++|+|++.++||+.+..  .+..            .+.|       
T Consensus       127 L-f~~~~~~-~---------------~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~  189 (352)
T cd01364         127 L-FEKLESQ-N---------------TEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVN  189 (352)
T ss_pred             H-HHHHHhc-c---------------ceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeC
Confidence            9 8877542 1               1144555999999999999998653  1111            1111       


Q ss_pred             ------------cccc--------ccc----------------------------------Cccccchhhhhhhhhhhhh
Q psy37           145 ------------SKAR--------NFG----------------------------------EGKDCVCSIVEAGDRLKEG  170 (279)
Q Consensus       145 ------------~~~~--------~~~----------------------------------~~~~~~~~~~~~~~~~~e~  170 (279)
                                  ...|        ..+                                  +|+|+.......+.+++|+
T Consensus       190 s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~  269 (352)
T cd01364         190 NANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREA  269 (352)
T ss_pred             CHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHH
Confidence                        1111        111                                  2333333333455688999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccC
Q psy37           171 AHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIIN  250 (279)
Q Consensus       171 ~~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~  250 (279)
                      ..||+||++|++||.+|+.    +..+||||+|+||+||+|+|||+++++||+||+|...+++||++||+||+++++|+|
T Consensus       270 ~~iN~SL~~L~~vi~al~~----~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n  345 (352)
T cd01364         270 GNINQSLLTLGRVINALVE----KSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKN  345 (352)
T ss_pred             hhhhHHHHHHHHHHHHHHc----CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999985    668999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCC
Q psy37           251 KPTVNED  257 (279)
Q Consensus       251 ~~~~~~~  257 (279)
                      .|.+|++
T Consensus       346 ~P~~n~~  352 (352)
T cd01364         346 KPEVNQK  352 (352)
T ss_pred             ccccCCC
Confidence            9999864

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=100.00  E-value=6.9e-52  Score=363.47  Aligned_cols=208  Identities=35%  Similarity=0.454  Sum_probs=173.5

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..++|++|+++++| |.......  
T Consensus        47 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~L-f~~~~~~~--  123 (319)
T cd01376          47 KKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDL-LRMGRKQA--  123 (319)
T ss_pred             cEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHH-HHHHhhcc--
Confidence            468999999999999999999999999999999999999999999999999999999999999999999 87654221  


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE---------EEeccccc--------------------
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF---------TMMGSKAR--------------------  148 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~---------~~~g~~~~--------------------  148 (279)
                                    ..+.+..+++|+|++.++||+.+......         .+.|....                    
T Consensus       124 --------------~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~  189 (319)
T cd01376         124 --------------WTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRT  189 (319)
T ss_pred             --------------ccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhc
Confidence                          11445559999999999999976422111         11111110                    


Q ss_pred             ------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhC
Q psy37           149 ------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELST  192 (279)
Q Consensus       149 ------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~~  192 (279)
                                                          ...+|+|+.......|.+++|+..||+||.+|++||.+|+.   
T Consensus       190 ~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~---  266 (319)
T cd01376         190 VAATKLNDNSSRSHAVLRIKVTQPASNIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNK---  266 (319)
T ss_pred             cccCcCCCccCCCeEEEEEEEEEECCCceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhc---
Confidence                                                11134444444445678899999999999999999999984   


Q ss_pred             CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37           193 KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK  246 (279)
Q Consensus       193 ~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~  246 (279)
                       +..|||||+|+||+||+|+|+|+++|+||+||+|...+++||++||+||+|+|
T Consensus       267 -~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~  319 (319)
T cd01376         267 -GLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK  319 (319)
T ss_pred             -CCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence             67899999999999999999999999999999999999999999999999986

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=100.00  E-value=1.9e-51  Score=362.76  Aligned_cols=212  Identities=46%  Similarity=0.633  Sum_probs=174.8

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceecccccc
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYWS   94 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~~   94 (279)
                      ..|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+..   .+|++|+++++| |......
T Consensus        48 ~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~L-f~~~~~~  126 (333)
T cd01371          48 KVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHI-FGHIAKA  126 (333)
T ss_pred             ceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHH-HHHHhhc
Confidence            358999999999999999999999999999999999999999999999999999987   899999999999 9876543


Q ss_pred             cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEe----------ccc------------------
Q psy37            95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM----------GSK------------------  146 (279)
Q Consensus        95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~----------g~~------------------  146 (279)
                      .+.               .+.+..+++|+|++.++||+.+...+...+.          |..                  
T Consensus       127 ~~~---------------~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~  191 (333)
T cd01371         127 ENV---------------QFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGN  191 (333)
T ss_pred             cCc---------------cEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHH
Confidence            221               1445559999999999999986653222111          100                  


Q ss_pred             -cc--------ccc----------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHH
Q psy37           147 -AR--------NFG----------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSV  183 (279)
Q Consensus       147 -~~--------~~~----------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~  183 (279)
                       .|        ..+                                  +|+|+.......+.+++|+..||+||.+|++|
T Consensus       192 ~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~v  271 (333)
T cd01371         192 KNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNV  271 (333)
T ss_pred             hhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHH
Confidence             00        001                                  23333333334567889999999999999999


Q ss_pred             HHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           184 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       184 i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      |.+|++   ....|||||+||||++|+++|+|+++++||+||+|...+++||++||+||+++|+|
T Consensus       272 i~al~~---~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I  333 (333)
T cd01371         272 ISALVD---GKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI  333 (333)
T ss_pred             HHHHHh---CCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence            999985   44469999999999999999999999999999999999999999999999999976

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=100.00  E-value=1.3e-51  Score=361.98  Aligned_cols=209  Identities=35%  Similarity=0.481  Sum_probs=171.2

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD   96 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~   96 (279)
                      ...|.||+||+++++|++||+.+++|+|+.+++|+|+||||||||||||||||+|+..++|++|+++++| |....... 
T Consensus        50 ~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~l-f~~~~~~~-  127 (322)
T cd01367          50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDI-FRLLAQPN-  127 (322)
T ss_pred             CceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHH-HHHHhccc-
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999 98875432 


Q ss_pred             CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce--------EEEecc-------------------cccc
Q psy37            97 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT--------FTMMGS-------------------KARN  149 (279)
Q Consensus        97 ~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~--------~~~~g~-------------------~~~~  149 (279)
                                     ..+.+..+++|+|++.++||+.+...-.        ..+.|.                   ..|.
T Consensus       128 ---------------~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~  192 (322)
T cd01367         128 ---------------DDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRT  192 (322)
T ss_pred             ---------------cccEEEEEEEeeecCchhhhccCccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccc
Confidence                           1144555999999999999986522111        111111                   1110


Q ss_pred             --------cc----------------------------Cccccchhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhC
Q psy37           150 --------FG----------------------------EGKDCVCSIV-EAGDRLKEGAHINKSLVTLGSVISSLAELST  192 (279)
Q Consensus       150 --------~~----------------------------~~~~~~~~~~-~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~~  192 (279)
                              .+                            +|+|...... ..+.+++|+..||+||.+|++||.+|++   
T Consensus       193 ~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~---  269 (322)
T cd01367         193 TGSTGANDQSSRSHAILQIILKNKKLNKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALAS---  269 (322)
T ss_pred             cccCcCCCCcccceEEEEEEEEEecCCeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhc---
Confidence                    11                            2333322221 2467789999999999999999999995   


Q ss_pred             CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37           193 KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK  246 (279)
Q Consensus       193 ~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~  246 (279)
                       +..|||||+||||++|+|+|+|+++++||+||+|...+++||++||+||+|+|
T Consensus       270 -~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k  322 (322)
T cd01367         270 -NKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK  322 (322)
T ss_pred             -CCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence             56899999999999999999999999999999999999999999999999986

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=100.00  E-value=2.4e-50  Score=355.63  Aligned_cols=208  Identities=40%  Similarity=0.548  Sum_probs=170.1

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC---CCCCCCCCccccceeccccccc
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK---ATTDNSPDAHKDFTFDHSYWSF   95 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~---~~~G~~~~~~~~l~f~~~~~~~   95 (279)
                      .|.||+||++ ++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+.   .++|++|+++++| |..+....
T Consensus        49 ~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~l-f~~~~~~~  126 (334)
T cd01375          49 SFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQV-FREVAMRA  126 (334)
T ss_pred             EEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHH-HHHHHhcc
Confidence            4899999999 99999999999999999999999999999999999999999976   4689999999999 98765322


Q ss_pred             CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC-----ceE----------EEecccc-------------
Q psy37            96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG-----KTF----------TMMGSKA-------------  147 (279)
Q Consensus        96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~-----~~~----------~~~g~~~-------------  147 (279)
                      .               ..+.+..+++|+|++.++||+.+...     ...          .+.|...             
T Consensus       127 ~---------------~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~  191 (334)
T cd01375         127 T---------------KTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLL  191 (334)
T ss_pred             C---------------cceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHH
Confidence            1               12455669999999999999987731     111          1111110             


Q ss_pred             ------c--------ccc---------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHH
Q psy37           148 ------R--------NFG---------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTL  180 (279)
Q Consensus       148 ------~--------~~~---------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L  180 (279)
                            |        ..+                                 +|+|+.......+..++|+..||+||.+|
T Consensus       192 ~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L  271 (334)
T cd01375         192 FLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFL  271 (334)
T ss_pred             HHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHH
Confidence                  0        111                                 23333333334567789999999999999


Q ss_pred             HHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37           181 GSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK  246 (279)
Q Consensus       181 ~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~  246 (279)
                      ++||.+|++   ....|||||+||||++|+|+|||+|+|+||+||+|...+++||++||+||+|++
T Consensus       272 ~~vi~~l~~---~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~  334 (334)
T cd01375         272 EQVINALSE---KARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA  334 (334)
T ss_pred             HHHHHHHHh---CCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            999999985   234899999999999999999999999999999999999999999999999984

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=100.00  E-value=2.4e-50  Score=357.54  Aligned_cols=217  Identities=43%  Similarity=0.581  Sum_probs=176.4

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC------CCCCCCCCccccceecc
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK------ATTDNSPDAHKDFTFDH   90 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~------~~~G~~~~~~~~l~f~~   90 (279)
                      ...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.      .++|++|+++++| |+.
T Consensus        39 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~L-F~~  117 (341)
T cd01372          39 DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHI-FKK  117 (341)
T ss_pred             CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHH-HHH
Confidence            456899999999999999999999999999999999999999999999999999974      5699999999999 988


Q ss_pred             cccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC--CceEEEe----------cc-------------
Q psy37            91 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS--GKTFTMM----------GS-------------  145 (279)
Q Consensus        91 ~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~--~~~~~~~----------g~-------------  145 (279)
                      ......              ...+.+..+++|+|++.++||+.+..  .....+.          |.             
T Consensus       118 ~~~~~~--------------~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~  183 (341)
T cd01372         118 IDEKKD--------------EPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMS  183 (341)
T ss_pred             HHhccc--------------cceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHH
Confidence            764322              11145555999999999999997653  1111110          00             


Q ss_pred             ------ccc-------------------------------------------------cccCccccchhhhhhhhhhhhh
Q psy37           146 ------KAR-------------------------------------------------NFGEGKDCVCSIVEAGDRLKEG  170 (279)
Q Consensus       146 ------~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~e~  170 (279)
                            ..|                                                 ...+|+|+.......+.+++|+
T Consensus       184 ~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~  263 (341)
T cd01372         184 CLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEG  263 (341)
T ss_pred             HHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHH
Confidence                  000                                                 0113334333334567888999


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcccc
Q psy37           171 AHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII  249 (279)
Q Consensus       171 ~~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~  249 (279)
                      ..||+||.+|++||.+|+..+. +..|||||+|+||+||+++|||+++++||+||+|...+++||++||+||+++|+||
T Consensus       264 ~~in~sl~aL~~vi~al~~~~~-~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik  341 (341)
T cd01372         264 ISINSGLLALGNVISALGDESK-KGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK  341 (341)
T ss_pred             HHHhHHHHHHHHHHHHHHhcCC-CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence            9999999999999999986332 34799999999999999999999999999999999999999999999999999986

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=100.00  E-value=2.5e-50  Score=354.32  Aligned_cols=213  Identities=39%  Similarity=0.549  Sum_probs=173.5

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD   96 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~   96 (279)
                      ...|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+..++|++|+++++| |........
T Consensus        39 ~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~l-f~~~~~~~~  117 (321)
T cd01374          39 GQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDI-FQRIQDTPD  117 (321)
T ss_pred             CeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHH-HHHHhcccC
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999 987753321


Q ss_pred             CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEecc-------------------ccc
Q psy37            97 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMGS-------------------KAR  148 (279)
Q Consensus        97 ~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g~-------------------~~~  148 (279)
                      .               .+.+..+++|+|++.++||+.+.....         ..+.|.                   ..|
T Consensus       118 ~---------------~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R  182 (321)
T cd01374         118 R---------------EFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNR  182 (321)
T ss_pred             c---------------eEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhcc
Confidence            1               134555999999999999997652211         111111                   111


Q ss_pred             c--------cc----------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy37           149 N--------FG----------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISS  186 (279)
Q Consensus       149 ~--------~~----------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~  186 (279)
                      .        .+                                  +|+|+..... .+.+++|+..||+||.+|++||.+
T Consensus       183 ~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~a  261 (321)
T cd01374         183 HVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISK  261 (321)
T ss_pred             ccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHH
Confidence            1        11                                  1222222222 477888999999999999999999


Q ss_pred             HHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       187 l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      |++.+  +..|||||+|+||+||+++|+|+++++||+||+|...+++||++||+||+++++|
T Consensus       262 l~~~~--~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i  321 (321)
T cd01374         262 LSEGK--NSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV  321 (321)
T ss_pred             HHhcC--CCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence            99621  1589999999999999999999999999999999999999999999999999875

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=100.00  E-value=2.2e-50  Score=355.39  Aligned_cols=214  Identities=41%  Similarity=0.562  Sum_probs=174.8

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceeccccc
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYW   93 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~   93 (279)
                      ...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+..   .+|++|+++++| |..+..
T Consensus        42 ~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~L-f~~~~~  120 (325)
T cd01369          42 GKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDI-FEHISS  120 (325)
T ss_pred             ceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHH-HHHHhh
Confidence            3468999999999999999999999999999999999999999999999999999988   899999999999 987653


Q ss_pred             ccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE---------EEeccc------------------
Q psy37            94 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF---------TMMGSK------------------  146 (279)
Q Consensus        94 ~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~---------~~~g~~------------------  146 (279)
                      ...              ...+.+..+++|+|++.++||+.+......         .+.|..                  
T Consensus       121 ~~~--------------~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~  186 (325)
T cd01369         121 MDE--------------NLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGK  186 (325)
T ss_pred             ccC--------------CceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHH
Confidence            311              111445559999999999999875422111         111110                  


Q ss_pred             -cc--------c-------------------------------ccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy37           147 -AR--------N-------------------------------FGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISS  186 (279)
Q Consensus       147 -~~--------~-------------------------------~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~  186 (279)
                       .|        .                               ..+|+|+.......+.+++|+..||+||.+|++||.+
T Consensus       187 ~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~a  266 (325)
T cd01369         187 SNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINA  266 (325)
T ss_pred             hhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHH
Confidence             00        0                               1134444433445677889999999999999999999


Q ss_pred             HHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       187 l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      |++   ....|||||+|+||+||+++|+|+++++||+||+|+..+++||++||+||+++|+|
T Consensus       267 L~~---~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i  325 (325)
T cd01369         267 LTD---GKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI  325 (325)
T ss_pred             HHc---CCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence            985   33489999999999999999999999999999999999999999999999999976

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=100.00  E-value=3.6e-49  Score=348.33  Aligned_cols=215  Identities=41%  Similarity=0.620  Sum_probs=176.3

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+.+ .|+|+++++|+|+|||+||+|||||||||+|+..++|++|+++++| |.......+.
T Consensus        45 ~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~l-f~~~~~~~~~  122 (329)
T cd01366          45 KSFSFDRVFDPDASQEDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQL-FNTAEELKEK  122 (329)
T ss_pred             eEEecCEEECCCCCHHHHHHHH-HHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHH-HHHHHhhhcc
Confidence            3589999999999999999985 7999999999999999999999999999999999999999999999 9876533221


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC--CceEE----------Eec-------------------cc
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS--GKTFT----------MMG-------------------SK  146 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~--~~~~~----------~~g-------------------~~  146 (279)
                                   +..+.+..+++|+|++.++||+....  .....          +.|                   ..
T Consensus       123 -------------~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~  189 (329)
T cd01366         123 -------------GWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSK  189 (329)
T ss_pred             -------------CceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHh
Confidence                         11245566999999999999998752  11111          111                   11


Q ss_pred             cccc--------c-------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37           147 ARNF--------G-------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL  187 (279)
Q Consensus       147 ~~~~--------~-------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l  187 (279)
                      .|..        +                               +|+|........+.+++|+..||+||.+|++||.+|
T Consensus       190 ~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l  269 (329)
T cd01366         190 NRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISAL  269 (329)
T ss_pred             hcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHH
Confidence            1100        1                               233333333346778899999999999999999999


Q ss_pred             HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCc
Q psy37           188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK  251 (279)
Q Consensus       188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~  251 (279)
                      +.    +..|||||+|+||++|+++|+|+++++||+||||...+++||++||+||+++++|++.
T Consensus       270 ~~----~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~  329 (329)
T cd01366         270 RS----KDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG  329 (329)
T ss_pred             hc----CCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence            84    6899999999999999999999999999999999999999999999999999999874

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>KOG0239|consensus

Probab=100.00  E-value=8e-50  Score=373.37  Aligned_cols=237  Identities=37%  Similarity=0.502  Sum_probs=191.8

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC-CCCCCCCCCCccccceecccccccCC
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG-SKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G-~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      .|.||+||+|.++|++||.++. |+|+.+++|||+||||||||||||||||.| +++++|++|++++.+ |..+..... 
T Consensus       361 ~f~fdkVf~p~~sQ~~VF~e~~-~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~l-F~~~~~~~~-  437 (670)
T KOG0239|consen  361 SFKFDKVFGPLASQDDVFEEVS-PLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKL-FRTITSLKS-  437 (670)
T ss_pred             cceeeeecCCcccHHHHHHHHH-HHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHH-HHHHHhhcc-
Confidence            4899999999999999999997 999999999999999999999999999999 689999999999999 987753322 


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC-CceEEEe-----------------------------cccc
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS-GKTFTMM-----------------------------GSKA  147 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~-~~~~~~~-----------------------------g~~~  147 (279)
                      .             +.+++-.+++|+||+.++||+..+. ...+.+.                             |...
T Consensus       438 g-------------~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~n  504 (670)
T KOG0239|consen  438 G-------------WKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSN  504 (670)
T ss_pred             C-------------ceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhcc
Confidence            1             1155556888888888888887653 1111111                             1111


Q ss_pred             c---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy37           148 R---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLA  188 (279)
Q Consensus       148 ~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~  188 (279)
                      |                                       ...+|+|++..-...|+|++|+..||+||++|+.||.+|+
T Consensus       505 Rsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~  584 (670)
T KOG0239|consen  505 RSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALA  584 (670)
T ss_pred             ccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHh
Confidence            1                                       1125667766666889999999999999999999999999


Q ss_pred             hhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHHHHHH
Q psy37           189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHD  268 (279)
Q Consensus       189 ~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~~l~~  268 (279)
                          ++..|||||+||||+||+++|||+++|+|+++|||...++.||+.+|+||++++.+...+.......... ..+..
T Consensus       585 ----~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~-~~~~~  659 (670)
T KOG0239|consen  585 ----SKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDD-VSLKR  659 (670)
T ss_pred             ----hcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccch-hhhhh
Confidence                4889999999999999999999999999999999999999999999999999999999887654333332 23444


Q ss_pred             HHHHHHHH
Q psy37           269 EITKLKAM  276 (279)
Q Consensus       269 ~~~~Lk~~  276 (279)
                      ....++..
T Consensus       660 ~~~~~~~~  667 (670)
T KOG0239|consen  660 FGQLEKLS  667 (670)
T ss_pred             hhhhhhhh
Confidence            44444443

>smart00129 KISc Kinesin motor, catalytic domain

Probab=100.00  E-value=1.6e-48  Score=345.28  Aligned_cols=221  Identities=47%  Similarity=0.614  Sum_probs=181.7

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+|||+||++||||||||+|+.+++|++|+++++| |.......+ 
T Consensus        46 ~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~L-f~~~~~~~~-  123 (335)
T smart00129       46 KKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDL-FEKIDKLEE-  123 (335)
T ss_pred             eEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHH-HHHhhhccc-
Confidence            458999999999999999999999999999999999999999999999999999999999999999999 987753321 


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEE---------Eecccc-------------------cc
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT---------MMGSKA-------------------RN  149 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~---------~~g~~~-------------------~~  149 (279)
                                   ...+.+..+++|+|++.++||+.+.......         +.+...                   |.
T Consensus       124 -------------~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~  190 (335)
T smart00129      124 -------------GWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRT  190 (335)
T ss_pred             -------------CceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccc
Confidence                         1124455599999999999999755432111         111100                   00


Q ss_pred             --------cc---------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy37           150 --------FG---------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLA  188 (279)
Q Consensus       150 --------~~---------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~  188 (279)
                              .+                                 +|+|+.......+.+++|+..||+||.+|++|+.+|+
T Consensus       191 ~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~  270 (335)
T smart00129      191 VAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALA  270 (335)
T ss_pred             cccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHH
Confidence                    00                                 2222222222456788999999999999999999998


Q ss_pred             hhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccccc
Q psy37           189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN  255 (279)
Q Consensus       189 ~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~  255 (279)
                      +.  .+..++|||+|+||+||+++|+|+++++||+||+|...+++||++||+||+++++|+++|++|
T Consensus       271 ~~--~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~  335 (335)
T smart00129      271 DG--QKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN  335 (335)
T ss_pred             hc--CCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence            52  357799999999999999999999999999999999999999999999999999999999875

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=100.00  E-value=4e-49  Score=349.38  Aligned_cols=216  Identities=42%  Similarity=0.623  Sum_probs=172.6

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC--CCCCCCCCCccccceeccccccc
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS--KATTDNSPDAHKDFTFDHSYWSF   95 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~--~~~~G~~~~~~~~l~f~~~~~~~   95 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+|||+||+|||||||||+|+  ..++|++|+++++| |.......
T Consensus        41 ~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~l-f~~~~~~~  119 (335)
T PF00225_consen   41 KSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDL-FSQIEERK  119 (335)
T ss_dssp             EEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHH-HHHHHHHT
T ss_pred             eEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHHH-hhhhcccc
Confidence            3578999999999999999999999999999999999999999999999999999  89999999999999 98876433


Q ss_pred             CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCC---CceEEEe-----------cccccccc----------
Q psy37            96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS---GKTFTMM-----------GSKARNFG----------  151 (279)
Q Consensus        96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~---~~~~~~~-----------g~~~~~~~----------  151 (279)
                      ...            ...+.+..+++|+|++.++||+.+..   .....+.           +.....+.          
T Consensus       120 ~~~------------~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~  187 (335)
T PF00225_consen  120 EKS------------GYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLK  187 (335)
T ss_dssp             TTS------------TEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHH
T ss_pred             ccc------------cccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeecccccccccccccccccc
Confidence            221            11245556999999999999999872   2222111           11111100          


Q ss_pred             -----------------Cccccchh-----------------------------------hhh-hhhhhhhhhHHHHHHH
Q psy37           152 -----------------EGKDCVCS-----------------------------------IVE-AGDRLKEGAHINKSLV  178 (279)
Q Consensus       152 -----------------~~~~~~~~-----------------------------------~~~-~~~~~~e~~~in~Sl~  178 (279)
                                       ..+|++..                                   ... .+.+++|+..||+||.
T Consensus       188 ~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~  267 (335)
T PF00225_consen  188 KGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLS  267 (335)
T ss_dssp             HHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHH
T ss_pred             chhhccccccccccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhh
Confidence                             11222111                                   111 2566899999999999


Q ss_pred             HHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           179 TLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       179 ~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      +|++||.+|+..  ....+||||+|+||+||+|+|+|+|+++||+||+|...++++|++||+||+++|+|
T Consensus       268 ~L~~vi~~L~~~--~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I  335 (335)
T PF00225_consen  268 ALGNVIRALAQG--SKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI  335 (335)
T ss_dssp             HHHHHHHHHHCT--TSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred             hhhhhHhhhhcc--ccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence            999999999952  24899999999999999999999999999999999999999999999999999986

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>KOG0244|consensus

Probab=100.00  E-value=1.2e-46  Score=350.37  Aligned_cols=256  Identities=40%  Similarity=0.525  Sum_probs=216.2

Q ss_pred             CCCCCcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC----CCCCCCCC
Q psy37             5 NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS----KATTDNSP   80 (279)
Q Consensus         5 ~~~~~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~----~~~~G~~~   80 (279)
                      ..|+..-...-++.+|.||.||+...+|.++|+.++.|+++.++.|||++|+|||||||||||||.+.    .+..|++|
T Consensus        19 ~~~~~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvip   98 (913)
T KOG0244|consen   19 VSPRTPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIP   98 (913)
T ss_pred             cCCCCCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCc
Confidence            35566666677888899999999999999999999999999999999999999999999999999886    34469999


Q ss_pred             CccccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc----------eEEEeccccc--
Q psy37            81 DAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK----------TFTMMGSKAR--  148 (279)
Q Consensus        81 ~~~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~----------~~~~~g~~~~--  148 (279)
                      +++..+ |..+.......               +.+.++++++|++.|+|++.+...+          ..++.|....  
T Consensus        99 r~v~~~-f~~i~~~~~~~---------------f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e~~g~it~~glte~tv  162 (913)
T KOG0244|consen   99 RAVSTL-FTRIGKTESFV---------------FRITVSFVELYNEEVLDLLKPSRLKANIKLREPKGEITIRGLTEKTV  162 (913)
T ss_pred             chHHHH-HHHHHhhhccc---------------eeeeeeeeeccchhhhhhcChhhhhhceeccccCCceEEEeehHHHH
Confidence            999999 98886443311               4444488888998888888722111          1222211111  


Q ss_pred             ---------------------------------------------------------cccCccccchhhhhhhhhhhhhh
Q psy37           149 ---------------------------------------------------------NFGEGKDCVCSIVEAGDRLKEGA  171 (279)
Q Consensus       149 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~  171 (279)
                                                                               ...+|++++.+....|.+++|+.
T Consensus       163 ~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgI  242 (913)
T KOG0244|consen  163 RMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGI  242 (913)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhhhhcc
Confidence                                                                     11267788888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCc
Q psy37           172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK  251 (279)
Q Consensus       172 ~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~  251 (279)
                      +||.+|++|++||.+|.+.+  +..|||||+|+||+||+++||||+.|+||+||||...+.+||++||+||.|+++|+|.
T Consensus       243 nIN~gLL~LgnVIsaLg~~k--k~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk  320 (913)
T KOG0244|consen  243 NINGGLLALGNVISALGEAK--KGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNK  320 (913)
T ss_pred             CcchHHHHHHHHHHHHHhhh--cCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhccc
Confidence            99999999999999998633  3669999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCccHHHHHHHHHHHHHHHHHhc
Q psy37           252 PTVNEDPNTRIIRELHDEITKLKAMLT  278 (279)
Q Consensus       252 ~~~~~~~~~~~~~~l~~~~~~Lk~~l~  278 (279)
                      |++|.++....+..++.++..|+.+|-
T Consensus       321 ~vvN~d~~~~~~~~lK~ql~~l~~ell  347 (913)
T KOG0244|consen  321 PVVNQDPKSFEMLKLKAQLEPLQVELL  347 (913)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998874

>KOG0246|consensus

Probab=100.00  E-value=1e-46  Score=333.22  Aligned_cols=219  Identities=34%  Similarity=0.464  Sum_probs=175.2

Q ss_pred             ccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC------CCCCCCCCccccceec
Q psy37            16 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK------ATTDNSPDAHKDFTFD   89 (279)
Q Consensus        16 d~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~------~~~G~~~~~~~~l~f~   89 (279)
                      +...|.||++|++.++++.||+.+++|+|..+++|.-+|+||||||||||||||-|+.      ...||-..+.+++ |.
T Consensus       256 En~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dv-f~  334 (676)
T KOG0246|consen  256 ENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDV-FR  334 (676)
T ss_pred             hhceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHH-HH
Confidence            3446899999999999999999999999999999999999999999999999998863      2358888888888 66


Q ss_pred             ccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC--------ceEEEecccccc------------
Q psy37            90 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG--------KTFTMMGSKARN------------  149 (279)
Q Consensus        90 ~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~--------~~~~~~g~~~~~------------  149 (279)
                      ....             ..|..+...++++|+|||..++||||.....        ....+.|.....            
T Consensus       335 ~L~~-------------p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe  401 (676)
T KOG0246|consen  335 LLRQ-------------PTYRKLDLKVYVTFFEIYGGKVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIE  401 (676)
T ss_pred             Hhcc-------------cchhhcceEEEEEEEEEeCcchhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHH
Confidence            5431             2345555777889999999999999986211        111222222222            


Q ss_pred             ---------------ccCccccchhhh-----------------------------hhhhhhhhhhHHHHHHHHHHHHHH
Q psy37           150 ---------------FGEGKDCVCSIV-----------------------------EAGDRLKEGAHINKSLVTLGSVIS  185 (279)
Q Consensus       150 ---------------~~~~~~~~~~~~-----------------------------~~~~~~~e~~~in~Sl~~L~~~i~  185 (279)
                                     .++.+|.+..++                             ...+...|++.||+||++|..||+
T Consensus       402 ~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIR  481 (676)
T KOG0246|consen  402 KGNSCRTSGQTSANSNSSRSHAVFQIILRKHGEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIR  481 (676)
T ss_pred             hcccccccCcccCcccccccceeEeeeeecCCcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence                           223444444433                             223455699999999999999999


Q ss_pred             HHHhhhCCCCCcccccchhHHHHhHhhcCC-CceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcc
Q psy37           186 SLAELSTKKSTFIPYRDSVLTWLLKDSLGG-NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKP  252 (279)
Q Consensus       186 ~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g-~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~  252 (279)
                      +|.    ..+.|+|||.||||++|+|+|=| +++|+||+||||....+++||+|||||.|+++.....
T Consensus       482 aLg----~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~  545 (676)
T KOG0246|consen  482 ALG----RNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDG  545 (676)
T ss_pred             Hhc----CCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence            997    58899999999999999999866 9999999999999999999999999999999976544

>cd00106 KISc Kinesin motor domain

Probab=100.00  E-value=2.2e-46  Score=330.93  Aligned_cols=213  Identities=44%  Similarity=0.608  Sum_probs=172.1

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+.++.|+|+++++|+|+|||+||++||||||||+|+..++|++|+++++| |........ 
T Consensus        45 ~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~L-f~~~~~~~~-  122 (328)
T cd00106          45 KSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDL-FNLIDERKE-  122 (328)
T ss_pred             eEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHH-HHHHhhccc-
Confidence            568999999999999999999999999999999999999999999999999999999999999999999 987754332 


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccC--CCceEE---------Eeccc-------------------c
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG--SGKTFT---------MMGSK-------------------A  147 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~--~~~~~~---------~~g~~-------------------~  147 (279)
                                  ....+.+..+++|+|++.++||+...  ......         +.|..                   .
T Consensus       123 ------------~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~  190 (328)
T cd00106         123 ------------KNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKN  190 (328)
T ss_pred             ------------cCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhh
Confidence                        01114455599999999999999875  221111         11100                   0


Q ss_pred             cc--------cc---------------------------------CccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy37           148 RN--------FG---------------------------------EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISS  186 (279)
Q Consensus       148 ~~--------~~---------------------------------~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~  186 (279)
                      |.        .+                                 +|+++.......+.++.|+..||+||.+|++|+.+
T Consensus       191 R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~  270 (328)
T cd00106         191 RTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISA  270 (328)
T ss_pred             cCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHH
Confidence            00        00                                 12222222224566788999999999999999999


Q ss_pred             HHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37           187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK  246 (279)
Q Consensus       187 l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~  246 (279)
                      |+..+  +..+||||+||||+||+|+|+|+++++||+||+|...+++||++||+||+++|
T Consensus       271 l~~~~--~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~  328 (328)
T cd00106         271 LSSGQ--KKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK  328 (328)
T ss_pred             HHhcC--CCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence            99521  14899999999999999999999999999999999999999999999999985

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>KOG0247|consensus

Probab=100.00  E-value=3.3e-45  Score=332.05  Aligned_cols=236  Identities=29%  Similarity=0.386  Sum_probs=188.6

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS   98 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~   98 (279)
                      .|+|.+||+++++|.+||+.++.|+|.+++.|.|..+|+||-|||||||||+|+...+||+||+++.| |..+.......
T Consensus        82 ~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~i-F~siq~~~~~k  160 (809)
T KOG0247|consen   82 KFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVI-FNSIQGRQAKK  160 (809)
T ss_pred             EeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHH-HHHhhceeccC
Confidence            36788888999999999999999999999999999999999999999999999999999999999998 76554311000


Q ss_pred             ------------------------------Cccccc---------HH-----HH------HhhhchhhHhhhhhccceee
Q psy37            99 ------------------------------SPQFAS---------QE-----QV------FNDLGMDVVDAAFEGYNACV  128 (279)
Q Consensus        99 ------------------------------~~~~~s---------~~-----ei------~~~~~~~l~~s~~e~~~~~v  128 (279)
                                                    .....+         +.     ..      -++..+.||++|+||||+.|
T Consensus       161 ~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~i  240 (809)
T KOG0247|consen  161 PVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYI  240 (809)
T ss_pred             ceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHH
Confidence                                          000000         00     01      14455778889999999999


Q ss_pred             eeccccCCCce---------------EEEeccc-------------------cc--------------------------
Q psy37           129 FAYGQTGSGKT---------------FTMMGSK-------------------AR--------------------------  148 (279)
Q Consensus       129 ~dl~~~~~~~~---------------~~~~g~~-------------------~~--------------------------  148 (279)
                      |||+...+...               ..+.|..                   .+                          
T Consensus       241 YDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~  320 (809)
T KOG0247|consen  241 YDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAP  320 (809)
T ss_pred             HHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecc
Confidence            99996432110               0111110                   00                          


Q ss_pred             ---------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh-CCCCCcccccchhHHHHhHhh
Q psy37           149 ---------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELS-TKKSTFIPYRDSVLTWLLKDS  212 (279)
Q Consensus       149 ---------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~-~~~~~~ipyr~SkLT~lL~~~  212 (279)
                                     ...+|+|+..+..+.|.|++|+++||.||++|+.||.+|.+++ .+.+.+|||||||||++++.+
T Consensus       321 ~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~  400 (809)
T KOG0247|consen  321 RSQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNY  400 (809)
T ss_pred             cccccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHh
Confidence                           1116777777777899999999999999999999999999876 344588999999999999999


Q ss_pred             cCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccccc
Q psy37           213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN  255 (279)
Q Consensus       213 l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~  255 (279)
                      |.|..+++||+||+|..++|+|+++.|+||+.++.+...+.+.
T Consensus       401 f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~  443 (809)
T KOG0247|consen  401 FDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI  443 (809)
T ss_pred             cCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence            9999999999999999999999999999999999998766554

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=1.7e-43  Score=329.17  Aligned_cols=222  Identities=40%  Similarity=0.545  Sum_probs=181.9

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD   96 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~   96 (279)
                      +..|.||+||++.++|++||+..++|+++.++.|+|+||||||||||||||||.|..+.+|++|+++..+ |+.......
T Consensus        55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~l-f~~l~~~~~  133 (568)
T COG5059          55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKEL-FSKLEDLSM  133 (568)
T ss_pred             ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHH-HHHHHhccc
Confidence            5669999999999999999999999999999999999999999999999999999999999999999999 887654332


Q ss_pred             -CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc---------eEEEec----------------------
Q psy37            97 -PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK---------TFTMMG----------------------  144 (279)
Q Consensus        97 -~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~---------~~~~~g----------------------  144 (279)
                       ..               +.+..+++|+|+|.++||+.+....         ...+.+                      
T Consensus       134 ~~~---------------~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~n  198 (568)
T COG5059         134 TKD---------------FAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKN  198 (568)
T ss_pred             Ccc---------------eeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhh
Confidence             11               3334466666666666665433321         000000                      


Q ss_pred             ------------------------------------cccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy37           145 ------------------------------------SKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLA  188 (279)
Q Consensus       145 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~  188 (279)
                                                          ...-...++++........+.++.|+..||+||.+|++||.+|.
T Consensus       199 r~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~  278 (568)
T COG5059         199 RTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALG  278 (568)
T ss_pred             cccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHh
Confidence                                                01111124556655555678899999999999999999999997


Q ss_pred             hhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccC
Q psy37           189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE  256 (279)
Q Consensus       189 ~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~  256 (279)
                      ..  ++..|||||+|+|||+|+++|||++++++||||+|...++++|.+||+||.+++.|++.+..+.
T Consensus       279 ~~--~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~  344 (568)
T COG5059         279 DK--KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS  344 (568)
T ss_pred             cc--ccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence            42  4788999999999999999999999999999999999999999999999999999999999995

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=100.00  E-value=2.1e-36  Score=245.91  Aligned_cols=179  Identities=40%  Similarity=0.572  Sum_probs=127.4

Q ss_pred             HHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCCCcccccHHHHHhhhch
Q psy37            35 VFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGM  114 (279)
Q Consensus        35 vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~  114 (279)
                      ||+.++ |+|+.+++|+|+|||+||||||||||||+|+..++|++|++++++ +.....-..........    .|...-
T Consensus         8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~~-~~ll~~g~~~R~~~~t~----~N~~SS   81 (186)
T cd01363           8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDV-IDLMDKGNANRTTAATA----MNEHSS   81 (186)
T ss_pred             HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHHH-HHHHhhccccccccccC----CCCccC
Confidence            999999 999999999999999999999999999999999999999999875 43332111110000000    000000


Q ss_pred             hhHhhhhhccceeeeeccccCCCceEEEeccccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhCCC
Q psy37           115 DVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKK  194 (279)
Q Consensus       115 ~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~~~~  194 (279)
                      . .-.++.++   +........+......+...-...+|+|++......+++++|+..||+||.+|++||.+|++    +
T Consensus        82 R-sH~i~~i~---v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~----~  153 (186)
T cd01363          82 R-SHSVFRIH---FGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE----R  153 (186)
T ss_pred             c-ccEEEEEE---EEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc----C
Confidence            0 00011111   11110111011112223334455578888887778889999999999999999999999985    6


Q ss_pred             CCcccccchhHHHHhHhhcCCCceEEEEEEeCC
Q psy37           195 STFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP  227 (279)
Q Consensus       195 ~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp  227 (279)
                      ..+||||+||||++|+|+|+|+++|+||+||||
T Consensus       154 ~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP  186 (186)
T cd01363         154 DSHVPYRESKLTRLLQDSLGGNSRTLMVACISP  186 (186)
T ss_pred             CCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence            789999999999999999999999999999998

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>KOG0245|consensus

Probab=97.93  E-value=1.9e-05  Score=76.50  Aligned_cols=79  Identities=58%  Similarity=1.063  Sum_probs=69.4

Q ss_pred             CCceeEecCCCCCCCCCCCccccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEE
Q psy37            63 SGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM  142 (279)
Q Consensus        63 SGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~  142 (279)
                      .|+|.|+.+++....-     ..+.|+.++|..+...+.++++..+|.+++.+++...||+||.|++.+++.++|++++|
T Consensus        31 ~gn~ttii~~~~~k~~-----~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTM  105 (1221)
T KOG0245|consen   31 QGNTTTIINPKGSKDA-----PKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTM  105 (1221)
T ss_pred             cCCceeeecCCCcccC-----CceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceee
Confidence            4678899876533221     12669999999999999999999999999999999999999999999999999999999


Q ss_pred             eccc
Q psy37           143 MGSK  146 (279)
Q Consensus       143 ~g~~  146 (279)
                      +|-.
T Consensus       106 MG~~  109 (1221)
T KOG0245|consen  106 MGFQ  109 (1221)
T ss_pred             eccC
Confidence            9977

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.78  E-value=0.005  Score=51.31  Aligned_cols=49  Identities=29%  Similarity=0.445  Sum_probs=29.4

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |+||..+. ..+++..|..+- .+.+.--..+| .++-||++|+||||-|.+
T Consensus         5 ~tFdnfv~-g~~N~~a~~~~~-~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A   53 (219)
T PF00308_consen    5 YTFDNFVV-GESNELAYAAAK-AIAENPGERYN-PLFLYGPSGLGKTHLLQA   53 (219)
T ss_dssp             -SCCCS---TTTTHHHHHHHH-HHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred             CccccCCc-CCcHHHHHHHHH-HHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence            56666553 455677665443 44444112233 478899999999998755

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>KOG4280|consensus

Probab=95.58  E-value=0.018  Score=54.07  Aligned_cols=44  Identities=50%  Similarity=0.894  Sum_probs=41.8

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS  145 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~  145 (279)
                      .+.+.++|+..+.+++.+++++||.+|+.+++.++|++++|.|.
T Consensus        63 ~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~  106 (574)
T KOG4280|consen   63 DSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGP  106 (574)
T ss_pred             CCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCC
Confidence            45788999999999999999999999999999999999999998

>PRK06893 DNA replication initiation factor; Validated

Probab=95.35  E-value=0.014  Score=48.88  Aligned_cols=46  Identities=11%  Similarity=0.146  Sum_probs=30.2

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ++||..+..+ +..-+ .    .+.+..-.+.+..++-||++|+||||.+.+
T Consensus        13 ~~fd~f~~~~-~~~~~-~----~~~~~~~~~~~~~l~l~G~~G~GKThL~~a   58 (229)
T PRK06893         13 ETLDNFYADN-NLLLL-D----SLRKNFIDLQQPFFYIWGGKSSGKSHLLKA   58 (229)
T ss_pred             ccccccccCC-hHHHH-H----HHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence            5788877544 22211 1    222333346777899999999999999865

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.30  E-value=0.0056  Score=52.62  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=28.5

Q ss_pred             HHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            40 GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        40 ~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .+|++..+.+--++.|+.-|+||||||.||-.
T Consensus       113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlAa  144 (353)
T COG2805         113 LPPIVRELAESPRGLILVTGPTGSGKSTTLAA  144 (353)
T ss_pred             CCHHHHHHHhCCCceEEEeCCCCCcHHHHHHH
Confidence            45688899999999999999999999999854

>KOG0241|consensus

Probab=95.12  E-value=0.038  Score=54.07  Aligned_cols=65  Identities=57%  Similarity=1.150  Sum_probs=59.4

Q ss_pred             ccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccccc
Q psy37            84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAR  148 (279)
Q Consensus        84 ~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~~  148 (279)
                      +.+.|+.+.|..+++...+++++.+|.-++..++.+.+++||.|++.+++.++++++.++|....
T Consensus        53 ktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~Q  117 (1714)
T KOG0241|consen   53 KTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQ  117 (1714)
T ss_pred             ceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCC
Confidence            34458999999999999999999999999999999999999999999999999999999987654

>PRK06620 hypothetical protein; Validated

Probab=94.97  E-value=0.017  Score=47.96  Aligned_cols=48  Identities=25%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccC---eeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYN---ACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n---~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |+||..+ ...+++..|..+.. +.+ -+ |.|   -.++-||++|+||||.+..
T Consensus        13 ~tfd~Fv-vg~~N~~a~~~~~~-~~~-~~-~~~~~~~~l~l~Gp~G~GKThLl~a   63 (214)
T PRK06620         13 YHPDEFI-VSSSNDQAYNIIKN-WQC-GF-GVNPYKFTLLIKGPSSSGKTYLTKI   63 (214)
T ss_pred             CCchhhE-ecccHHHHHHHHHH-HHH-cc-ccCCCcceEEEECCCCCCHHHHHHH
Confidence            4566655 44556777777652 332 12 333   4599999999999999865

>PRK12377 putative replication protein; Provisional

Probab=94.57  E-value=0.036  Score=47.01  Aligned_cols=49  Identities=20%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +||.....+..|..++..+ ..+++.+..+. ..++-+|++|+||||.+.+
T Consensus        72 tFdnf~~~~~~~~~a~~~a-~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A  120 (248)
T PRK12377         72 SFANYQVQNDGQRYALSQA-KSIADELMTGC-TNFVFSGKPGTGKNHLAAA  120 (248)
T ss_pred             CcCCcccCChhHHHHHHHH-HHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence            4555444455666666654 46777776553 5789999999999999855

>PRK09087 hypothetical protein; Validated

Probab=94.43  E-value=0.027  Score=47.09  Aligned_cols=46  Identities=22%  Similarity=0.064  Sum_probs=30.1

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |+||..+..+ .+..+|..+     ++...-.+..++-||++||||||.+..
T Consensus        18 ~~~~~Fi~~~-~N~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~~   63 (226)
T PRK09087         18 YGRDDLLVTE-SNRAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLASI   63 (226)
T ss_pred             CChhceeecC-chHHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHHH
Confidence            5777776433 445577633     332222345689999999999999864

>PRK08084 DNA replication initiation factor; Provisional

Probab=94.16  E-value=0.027  Score=47.41  Aligned_cols=46  Identities=11%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |.||..+..  .+...+..+- .+..   ......++-||++|+||||.+.+
T Consensus        19 ~~fd~f~~~--~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~a   64 (235)
T PRK08084         19 ETFASFYPG--DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLHA   64 (235)
T ss_pred             CCccccccC--ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence            567765544  5666665443 2221   22234799999999999999864

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.12  E-value=0.021  Score=52.63  Aligned_cols=30  Identities=27%  Similarity=0.323  Sum_probs=26.9

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..+..+++.-.+-|+.-|+||||||.||+.
T Consensus       248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~  277 (500)
T COG2804         248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA  277 (500)
T ss_pred             HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence            466778888999999999999999999987

>PRK05642 DNA replication initiation factor; Validated

Probab=94.04  E-value=0.041  Score=46.27  Aligned_cols=45  Identities=16%  Similarity=0.392  Sum_probs=27.9

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccc----cCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEG----YNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G----~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |+||..+..  .+...     ...+++..++    -...++-||++|+||||-+.+
T Consensus        16 ~tfdnF~~~--~~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a   64 (234)
T PRK05642         16 ATFANYYPG--ANAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA   64 (234)
T ss_pred             ccccccCcC--ChHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence            678887733  23332     2334333222    235688999999999999754

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=94.03  E-value=0.027  Score=53.63  Aligned_cols=56  Identities=27%  Similarity=0.456  Sum_probs=35.5

Q ss_pred             eeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            12 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        12 ~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ...+... |.||..+-. .++.-.|..+ ..+++..-.++|. |+-||.+|+||||.+.+
T Consensus       278 ~a~L~~~-~TFDnFvvG-~sN~~A~aaa-~avae~~~~~~Np-L~LyG~sGsGKTHLL~A  333 (617)
T PRK14086        278 TARLNPK-YTFDTFVIG-ASNRFAHAAA-VAVAEAPAKAYNP-LFIYGESGLGKTHLLHA  333 (617)
T ss_pred             cCCCCCC-CCHhhhcCC-CccHHHHHHH-HHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence            3445444 578876633 3455555433 3555543345565 89999999999999865

>PRK08116 hypothetical protein; Validated

Probab=93.99  E-value=0.04  Score=47.35  Aligned_cols=50  Identities=20%  Similarity=0.217  Sum_probs=32.7

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhcc--ccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFE--GYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~--G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ++||... .+..+...|..+ ...++.+.+  ..+..++.||++|+||||.+..
T Consensus        82 ~tFdnf~-~~~~~~~a~~~a-~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a  133 (268)
T PRK08116         82 STFENFL-FDKGSEKAYKIA-RKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC  133 (268)
T ss_pred             cchhccc-CChHHHHHHHHH-HHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence            3455433 345566565544 466766543  3445699999999999998854

>PRK06526 transposase; Provisional

Probab=93.75  E-value=0.025  Score=48.25  Aligned_cols=46  Identities=24%  Similarity=0.307  Sum_probs=29.3

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .||.-+.+.-++..+..-...+.++   .+.  .|+.+|++|+||||...+
T Consensus        72 ~fd~~~~~~~~~~~~~~l~~~~fi~---~~~--nlll~Gp~GtGKThLa~a  117 (254)
T PRK06526         72 EFDFDHQRSLKRDTIAHLGTLDFVT---GKE--NVVFLGPPGTGKTHLAIG  117 (254)
T ss_pred             hccCccCCCcchHHHHHHhcCchhh---cCc--eEEEEeCCCCchHHHHHH
Confidence            4554455555666555433333332   343  489999999999999865

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=93.68  E-value=0.061  Score=48.21  Aligned_cols=48  Identities=23%  Similarity=0.400  Sum_probs=29.6

Q ss_pred             cCCCCCCCCCHHHHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEec
Q psy37            22 FDPSSPQFASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        22 fd~vf~~~~~q~~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      -|++.+.=...++-.+.+. ..+..++. +...+++.||++|+|||+++.
T Consensus        10 ~~~~p~~l~gRe~e~~~l~-~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~   58 (365)
T TIGR02928        10 PDYVPDRIVHRDEQIEELA-KALRPILRGSRPSNVFIYGKTGTGKTAVTK   58 (365)
T ss_pred             CCCCCCCCCCcHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence            3333333334444444444 33444443 556789999999999999884

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=93.53  E-value=0.045  Score=50.50  Aligned_cols=48  Identities=23%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |+||.... ..++...|..+. .+.++ -..+|. ++-||++|+||||.+.+
T Consensus       102 ~tFdnFv~-g~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a  149 (440)
T PRK14088        102 YTFENFVV-GPGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQS  149 (440)
T ss_pred             Cccccccc-CCchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence            68888664 355666666544 34433 112554 99999999999999864

>PRK07952 DNA replication protein DnaC; Validated

Probab=93.50  E-value=0.081  Score=44.77  Aligned_cols=49  Identities=18%  Similarity=0.225  Sum_probs=32.2

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +||........|..++..+. ..++.+..+. ..++.+|++|+||||.+.+
T Consensus        70 tFdnf~~~~~~q~~al~~a~-~~~~~~~~~~-~~~~l~G~~GtGKThLa~a  118 (244)
T PRK07952         70 SFENYRVECEGQMNALSKAR-QYVEEFDGNI-ASFIFSGKPGTGKNHLAAA  118 (244)
T ss_pred             ccccccCCCchHHHHHHHHH-HHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence            44443333455666666554 5666655443 3789999999999999855

>PF13245 AAA_19: Part of AAA domain

Probab=93.42  E-value=0.025  Score=38.65  Aligned_cols=27  Identities=30%  Similarity=0.384  Sum_probs=19.0

Q ss_pred             HHHhccccCeeEeeccCcCCCceeEecC
Q psy37            44 VDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        44 v~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |...+. -+..++.-|+.|||||+|+..
T Consensus         3 v~~al~-~~~~~vv~g~pGtGKT~~~~~   29 (76)
T PF13245_consen    3 VRRALA-GSPLFVVQGPPGTGKTTTLAA   29 (76)
T ss_pred             HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence            444455 445566689999999999743

>PRK08181 transposase; Validated

Probab=92.98  E-value=0.1  Score=44.88  Aligned_cols=49  Identities=27%  Similarity=0.372  Sum_probs=29.1

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEecC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .+-.||.-+.+.-+...+..-..   .+..+ .|.|  |+.+|++|+||||-+.+
T Consensus        76 tle~fd~~~~~~~~~~~~~~L~~---~~~~~~~~~n--lll~Gp~GtGKTHLa~A  125 (269)
T PRK08181         76 TLDSFDFEAVPMVSKAQVMAIAA---GDSWLAKGAN--LLLFGPPGGGKSHLAAA  125 (269)
T ss_pred             CHhhCCccCCCCCCHHHHHHHHH---HHHHHhcCce--EEEEecCCCcHHHHHHH
Confidence            33345544555555555543322   22222 4444  99999999999998865

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=92.87  E-value=0.095  Score=43.67  Aligned_cols=47  Identities=13%  Similarity=0.280  Sum_probs=28.6

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ++||.++.  ..++++... +..++..  ......++-+|++|+||||.+..
T Consensus        15 ~~~d~f~~--~~~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a   61 (227)
T PRK08903         15 PTFDNFVA--GENAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQA   61 (227)
T ss_pred             hhhccccc--CCcHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence            56777662  223334332 3333331  23456899999999999998744

>PRK06835 DNA replication protein DnaC; Validated

Probab=92.71  E-value=0.13  Score=45.54  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=26.5

Q ss_pred             HHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            33 EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        33 ~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..+++.+ ...++.+-.+. -.++.||++|+||||.+.+
T Consensus       166 ~~~~~~~-~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a  202 (329)
T PRK06835        166 EKILEKC-KNFIENFDKNN-ENLLFYGNTGTGKTFLSNC  202 (329)
T ss_pred             HHHHHHH-HHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence            3444433 35777776544 6699999999999998754

>PRK08727 hypothetical protein; Validated

Probab=92.49  E-value=0.091  Score=44.15  Aligned_cols=19  Identities=26%  Similarity=0.546  Sum_probs=16.6

Q ss_pred             eeEeeccCcCCCceeEecC
Q psy37            53 ACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        53 ~~v~~yG~tgSGKT~Tl~G   71 (279)
                      -.|+-||++|+||||.+.+
T Consensus        42 ~~l~l~G~~G~GKThL~~a   60 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALA   60 (233)
T ss_pred             CeEEEECCCCCCHHHHHHH
Confidence            4599999999999998855

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=92.38  E-value=0.47  Score=42.54  Aligned_cols=62  Identities=68%  Similarity=1.272  Sum_probs=53.2

Q ss_pred             ceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37            86 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA  147 (279)
Q Consensus        86 l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~  147 (279)
                      +.|+.+.+..+......+++.++|+..+.+++.+++.+|+.+|+.+++.++|+++++.|...
T Consensus        50 f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~  111 (356)
T cd01365          50 FSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE  111 (356)
T ss_pred             EECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCC
Confidence            33777766666666677889999999999999999999999999999999999999998643

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=92.37  E-value=0.12  Score=42.74  Aligned_cols=46  Identities=17%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ++||.... + .++.+++.+- .++   .......|+.||++|+||||.+..
T Consensus        12 ~~~~~~~~-~-~~~~~~~~l~-~~~---~~~~~~~lll~G~~G~GKT~la~~   57 (226)
T TIGR03420        12 PTFDNFYA-G-GNAELLAALR-QLA---AGKGDRFLYLWGESGSGKSHLLQA   57 (226)
T ss_pred             hhhcCcCc-C-CcHHHHHHHH-HHH---hcCCCCeEEEECCCCCCHHHHHHH
Confidence            56666663 2 4555555443 222   245677899999999999998743

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=92.29  E-value=0.063  Score=42.55  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=17.3

Q ss_pred             cCeeEeeccCcCCCceeEecC
Q psy37            51 YNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        51 ~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ....++..++||||||++|..
T Consensus        24 ~~~~~ll~~~tGsGKT~~~~~   44 (184)
T PF04851_consen   24 EERRVLLNAPTGSGKTIIALA   44 (184)
T ss_dssp             GCSEEEEEESTTSSHHHHHHH
T ss_pred             CCCCEEEEECCCCCcChhhhh
Confidence            466677788999999999964

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>PRK08939 primosomal protein DnaI; Reviewed

Probab=92.26  E-value=0.067  Score=46.92  Aligned_cols=41  Identities=20%  Similarity=0.391  Sum_probs=30.0

Q ss_pred             CCHHHHHHHhHHHHHHHhccc-cCeeEeeccCcCCCceeEecC
Q psy37            30 ASQEQVFNDLGMDVVDAAFEG-YNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        30 ~~q~~vy~~~~~~lv~~v~~G-~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..+..++..+ ...++....| ..-.++.||++|+||||.+.+
T Consensus       134 ~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A  175 (306)
T PRK08939        134 RDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA  175 (306)
T ss_pred             hHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence            3666777754 4677766544 334699999999999999865

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=92.18  E-value=0.14  Score=46.37  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=24.8

Q ss_pred             HHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEec
Q psy37            32 QEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        32 q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      -++-.+.+. ..+...+ .+....++-||++|+|||+++.
T Consensus        35 Re~e~~~l~-~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~   73 (394)
T PRK00411         35 REEQIEELA-FALRPALRGSRPLNVLIYGPPGTGKTTTVK   73 (394)
T ss_pred             HHHHHHHHH-HHHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence            344444443 3333444 4455678999999999999884

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=92.13  E-value=0.098  Score=47.76  Aligned_cols=49  Identities=22%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |.||.... ...+...|..+. .+.+.- .+.--.++-||++|+||||.+..
T Consensus       107 ~tfd~fi~-g~~n~~a~~~~~-~~~~~~-~~~~n~l~l~G~~G~GKThL~~a  155 (405)
T TIGR00362       107 YTFDNFVV-GKSNRLAHAAAL-AVAENP-GKAYNPLFIYGGVGLGKTHLLHA  155 (405)
T ss_pred             Cccccccc-CCcHHHHHHHHH-HHHhCc-CccCCeEEEECCCCCcHHHHHHH
Confidence            57887442 455665655443 444431 11122478899999999999854

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=92.02  E-value=0.094  Score=48.61  Aligned_cols=49  Identities=27%  Similarity=0.344  Sum_probs=30.5

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |.||.... ...+...|..+- .+.+.--..+| .++-||++|+||||.+..
T Consensus       119 ~tfd~fv~-g~~n~~a~~~~~-~~~~~~~~~~~-~l~l~G~~G~GKThL~~a  167 (450)
T PRK00149        119 YTFDNFVV-GKSNRLAHAAAL-AVAENPGKAYN-PLFIYGGVGLGKTHLLHA  167 (450)
T ss_pred             Cccccccc-CCCcHHHHHHHH-HHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence            57887543 345555555443 34433212233 588899999999999854

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=91.91  E-value=0.14  Score=47.42  Aligned_cols=47  Identities=28%  Similarity=0.367  Sum_probs=29.4

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |....-|.|.-+|-+-    +..+++.+-+|.. .-...|.|||||||||--
T Consensus         5 F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~-~QtLLGvTGSGKTfT~An   51 (663)
T COG0556           5 FKLHSPFKPAGDQPEA----IAELVEGIENGLK-HQTLLGVTGSGKTFTMAN   51 (663)
T ss_pred             eEeccCCCCCCCcHHH----HHHHHHHHhcCce-eeEEeeeccCCchhHHHH
Confidence            3444456777777553    2344444444433 455679999999999943

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=91.83  E-value=0.095  Score=39.45  Aligned_cols=24  Identities=29%  Similarity=0.277  Sum_probs=17.9

Q ss_pred             HhccccCeeEeeccCcCCCceeEe
Q psy37            46 AAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        46 ~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .+.......++.+|++|+|||+.+
T Consensus        13 ~~~~~~~~~v~i~G~~G~GKT~l~   36 (151)
T cd00009          13 ALELPPPKNLLLYGPPGTGKTTLA   36 (151)
T ss_pred             HHhCCCCCeEEEECCCCCCHHHHH
Confidence            333334557889999999999876

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.81  E-value=0.097  Score=44.47  Aligned_cols=36  Identities=33%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             HHHh-HHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            36 FNDL-GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        36 y~~~-~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |++. .+|+++++.---.+.|+..|+|||||+.||-.
T Consensus       110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAa  146 (375)
T COG5008         110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAA  146 (375)
T ss_pred             HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHH
Confidence            4444 44578887777778899999999999999853

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=91.58  E-value=0.12  Score=46.39  Aligned_cols=26  Identities=35%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             HHHhc-cccCeeEeeccCcCCCceeEe
Q psy37            44 VDAAF-EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        44 v~~v~-~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +..++ .+....++.||.+|+|||.|+
T Consensus        33 l~~~~~~~~p~n~~iyG~~GTGKT~~~   59 (366)
T COG1474          33 LAPALRGERPSNIIIYGPTGTGKTATV   59 (366)
T ss_pred             HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence            33444 455555999999999999987

>PRK10436 hypothetical protein; Provisional

Probab=91.55  E-value=0.061  Score=49.82  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=25.1

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..+..++..-.+.|+..|+||||||.||+.
T Consensus       208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~a  237 (462)
T PRK10436        208 AQFRQALQQPQGLILVTGPTGSGKTVTLYS  237 (462)
T ss_pred             HHHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence            345566777889999999999999999964

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=91.42  E-value=0.19  Score=42.90  Aligned_cols=41  Identities=22%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            28 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        28 ~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +...+..++.... .+++.+-  ....++-||++|+||||-..+
T Consensus        84 ~~~~~~~~l~~~~-~~~~~~~--~~~nl~l~G~~G~GKThLa~A  124 (254)
T COG1484          84 QPGIDKKALEDLA-SLVEFFE--RGENLVLLGPPGVGKTHLAIA  124 (254)
T ss_pred             CcchhHHHHHHHH-HHHHHhc--cCCcEEEECCCCCcHHHHHHH
Confidence            4456777777765 5665555  555678899999999998755

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=91.20  E-value=0.073  Score=50.75  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .+..++..-.+.|+..|+||||||.||+.
T Consensus       307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a  335 (564)
T TIGR02538       307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT  335 (564)
T ss_pred             HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence            56677778889999999999999999965

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=91.08  E-value=0.12  Score=46.86  Aligned_cols=49  Identities=24%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |.||... +..++.-.|....  .+...-.+.---++-||++|+||||-|..
T Consensus        84 ytFdnFv-~g~~N~~A~aa~~--~va~~~g~~~nplfi~G~~GlGKTHLl~A  132 (408)
T COG0593          84 YTFDNFV-VGPSNRLAYAAAK--AVAENPGGAYNPLFIYGGVGLGKTHLLQA  132 (408)
T ss_pred             Cchhhee-eCCchHHHHHHHH--HHHhccCCcCCcEEEECCCCCCHHHHHHH
Confidence            5666655 4455555544433  22222223345688999999999999964

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=90.89  E-value=0.15  Score=47.27  Aligned_cols=49  Identities=31%  Similarity=0.396  Sum_probs=30.9

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |+||.....+ +++..|..+ ..+++.--..+| .++-||++|+||||.|.+
T Consensus       112 ~tFdnFv~g~-~n~~A~~aa-~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A  160 (450)
T PRK14087        112 NTFENFVIGS-SNEQAFIAV-QTVSKNPGISYN-PLFIYGESGMGKTHLLKA  160 (450)
T ss_pred             cchhcccCCC-cHHHHHHHH-HHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence            6888866443 555566433 344432111123 488999999999999865

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=90.78  E-value=0.095  Score=48.99  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=25.0

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..+..++..-.+.|+..|+||||||.||..
T Consensus       232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a  261 (486)
T TIGR02533       232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA  261 (486)
T ss_pred             HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence            355666777788999999999999999974

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=90.47  E-value=0.088  Score=42.97  Aligned_cols=29  Identities=24%  Similarity=0.334  Sum_probs=21.8

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ..+..++...+..++..|+.|+||||+|.
T Consensus         8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~   36 (196)
T PF13604_consen    8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK   36 (196)
T ss_dssp             HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred             HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence            45666665555566778999999999873

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=90.11  E-value=0.11  Score=46.34  Aligned_cols=30  Identities=30%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |.+..++.--.+.|+..|+||||||.||..
T Consensus       112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a  141 (343)
T TIGR01420       112 PVLRELAERPRGLILVTGPTGSGKSTTLAS  141 (343)
T ss_pred             HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence            455555554567899999999999999964

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=89.99  E-value=0.19  Score=40.36  Aligned_cols=20  Identities=30%  Similarity=0.582  Sum_probs=16.1

Q ss_pred             CeeEeeccCcCCCceeEecC
Q psy37            52 NACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .-.++.+|++|+||||...+
T Consensus        47 ~~~l~l~G~~G~GKThLa~a   66 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVA   66 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHH
T ss_pred             CeEEEEEhhHhHHHHHHHHH
Confidence            45699999999999998755

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=89.99  E-value=0.12  Score=46.52  Aligned_cols=28  Identities=21%  Similarity=0.309  Sum_probs=21.0

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +++.++. .++.|+..|+||||||.||..
T Consensus       141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a  168 (372)
T TIGR02525       141 LFNSLLP-AAGLGLICGETGSGKSTLAAS  168 (372)
T ss_pred             HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence            4444443 456788999999999999954

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>cd01131 PilT Pilus retraction ATPase PilT

Probab=89.73  E-value=0.091  Score=42.96  Aligned_cols=20  Identities=40%  Similarity=0.581  Sum_probs=17.0

Q ss_pred             CeeEeeccCcCCCceeEecC
Q psy37            52 NACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ++.|+..|+||||||.++..
T Consensus         1 ~GlilI~GptGSGKTTll~~   20 (198)
T cd01131           1 RGLVLVTGPTGSGKSTTLAA   20 (198)
T ss_pred             CcEEEEECCCCCCHHHHHHH
Confidence            36789999999999999853

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=89.71  E-value=0.086  Score=39.27  Aligned_cols=17  Identities=41%  Similarity=0.515  Sum_probs=15.0

Q ss_pred             EeeccCcCCCceeEecC
Q psy37            55 VFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        55 v~~yG~tgSGKT~Tl~G   71 (279)
                      ++.+|++|+|||+++..
T Consensus         3 ~~i~~~~G~GKT~~~~~   19 (144)
T cd00046           3 VLLAAPTGSGKTLAALL   19 (144)
T ss_pred             EEEECCCCCchhHHHHH
Confidence            67899999999999865

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=89.66  E-value=0.51  Score=41.99  Aligned_cols=48  Identities=46%  Similarity=0.797  Sum_probs=43.0

Q ss_pred             CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37            99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus        99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      +....++.++|+..+.+++.+++++|+.+++.+++.++|+++++.|..
T Consensus        62 f~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~  109 (338)
T cd01370          62 FDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTD  109 (338)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCC
Confidence            344567899999999999999999999999999999999999999864

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=89.46  E-value=0.86  Score=40.21  Aligned_cols=44  Identities=45%  Similarity=0.714  Sum_probs=40.8

Q ss_pred             ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ..+.++|+....+++..++++|+.+++.+++.++|+++++.|..
T Consensus        59 ~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~  102 (319)
T cd01376          59 CTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDP  102 (319)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCc
Confidence            57889999999999999999999999999999999999999854

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=89.21  E-value=0.16  Score=43.57  Aligned_cols=30  Identities=30%  Similarity=0.474  Sum_probs=23.7

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..+..++..-.+.|+..|+||||||.||..
T Consensus        70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~a   99 (264)
T cd01129          70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYS   99 (264)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence            345566666677899999999999999854

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=89.14  E-value=0.5  Score=42.06  Aligned_cols=46  Identities=52%  Similarity=0.943  Sum_probs=42.0

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA  147 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~  147 (279)
                      ...+.++|+..+.+++..++++|+.+++.+++.++|+++++.|...
T Consensus        52 ~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~   97 (337)
T cd01373          52 NTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSS   97 (337)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCC
Confidence            4678899999999999999999999999999999999999999654

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>KOG0989|consensus

Probab=89.12  E-value=0.23  Score=43.07  Aligned_cols=38  Identities=26%  Similarity=0.300  Sum_probs=24.6

Q ss_pred             HHHHHHhHHHHHHHhccc-cCeeEeeccCcCCCceeEec
Q psy37            33 EQVFNDLGMDVVDAAFEG-YNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        33 ~~vy~~~~~~lv~~v~~G-~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      +-++++.+-.++.+.+.+ .--..+.||+.|+|||.|..
T Consensus        37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal   75 (346)
T KOG0989|consen   37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL   75 (346)
T ss_pred             hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence            333444434545555544 44568899999999999863

>KOG0243|consensus

Probab=89.10  E-value=0.75  Score=46.11  Aligned_cols=48  Identities=40%  Similarity=0.784  Sum_probs=42.7

Q ss_pred             ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccccccc
Q psy37           103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNF  150 (279)
Q Consensus       103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~~~~  150 (279)
                      +.++++|+....+++.-++++||+.|+.|++.+.|++++|.|......
T Consensus       107 s~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~  154 (1041)
T KOG0243|consen  107 SQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKN  154 (1041)
T ss_pred             hhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCccccc
Confidence            447889999999999999999999999999999999999999766444

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=89.05  E-value=0.13  Score=44.16  Aligned_cols=29  Identities=24%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             HHHHHhcccc---CeeEeeccCcCCCceeEec
Q psy37            42 DVVDAAFEGY---NACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        42 ~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl~   70 (279)
                      +.+..++...   .+.|+.-|+||||||.+|.
T Consensus       114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~  145 (270)
T PF00437_consen  114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLN  145 (270)
T ss_dssp             HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHH
T ss_pred             HHHHHHHhhccccceEEEEECCCccccchHHH
Confidence            3344444444   6778888999999999984

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=89.04  E-value=0.15  Score=45.72  Aligned_cols=27  Identities=33%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             HHhccccCeeEeeccCcCCCceeEecC
Q psy37            45 DAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        45 ~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ...+.--.+.|+..|+||||||.||..
T Consensus       127 ~~~~~~~~glilI~GpTGSGKTTtL~a  153 (358)
T TIGR02524       127 IDAIAPQEGIVFITGATGSGKSTLLAA  153 (358)
T ss_pred             HHHHhccCCEEEEECCCCCCHHHHHHH
Confidence            334444578999999999999999865

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=89.03  E-value=0.11  Score=43.32  Aligned_cols=18  Identities=44%  Similarity=0.689  Sum_probs=15.5

Q ss_pred             CeeEeeccCcCCCceeEe
Q psy37            52 NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl   69 (279)
                      +--+..+|.||||||+|+
T Consensus        23 ~~H~~I~G~TGsGKS~~~   40 (229)
T PF01935_consen   23 NRHIAIFGTTGSGKSNTV   40 (229)
T ss_pred             cceEEEECCCCCCHHHHH
Confidence            446778999999999998

It contains several conserved aspartates and histidines that could be metal ligands.

>PRK09183 transposase/IS protein; Provisional

Probab=88.94  E-value=0.23  Score=42.44  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=26.1

Q ss_pred             cCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            22 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        22 fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ||.-|.+..+...+..-.....   +-.|.  .|+.+|++|+||||.+.+
T Consensus        77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~--~v~l~Gp~GtGKThLa~a  121 (259)
T PRK09183         77 YDFTFATGAPQKQLQSLRSLSF---IERNE--NIVLLGPSGVGKTHLAIA  121 (259)
T ss_pred             cccccCCCCCHHHHHHHhcCCc---hhcCC--eEEEEeCCCCCHHHHHHH
Confidence            4444556666655432211111   22343  477899999999998754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=88.86  E-value=0.087  Score=39.49  Aligned_cols=18  Identities=33%  Similarity=0.460  Sum_probs=13.1

Q ss_pred             CeeEeeccCcCCCceeEe
Q psy37            52 NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..+++.+|++|+|||.++
T Consensus         4 ~~~~~i~G~~G~GKT~~~   21 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLI   21 (131)
T ss_dssp             ---EEEEE-TTSSHHHHH
T ss_pred             CcccEEEcCCCCCHHHHH
Confidence            457899999999999987

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=88.54  E-value=0.12  Score=38.47  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=16.3

Q ss_pred             eeEeeccCcCCCceeEecC
Q psy37            53 ACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        53 ~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..++-+|++|||||.++..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~   21 (148)
T smart00382        3 EVILIVGPPGSGKTTLARA   21 (148)
T ss_pred             CEEEEECCCCCcHHHHHHH
Confidence            4688999999999999844

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=88.53  E-value=0.24  Score=44.52  Aligned_cols=37  Identities=24%  Similarity=0.420  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            29 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        29 ~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +..|.++|+.+...+..    .....+|.-|+.|+||||.+
T Consensus         3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~   39 (364)
T PF05970_consen    3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI   39 (364)
T ss_pred             CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence            46799999998754332    34456788999999999987

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK06921 hypothetical protein; Provisional

Probab=88.48  E-value=0.46  Score=40.76  Aligned_cols=31  Identities=29%  Similarity=0.375  Sum_probs=22.6

Q ss_pred             HHHHHHhc---cccCeeEeeccCcCCCceeEecC
Q psy37            41 MDVVDAAF---EGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        41 ~~lv~~v~---~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ...++++-   .+....++.||++|+||||.+.+
T Consensus       103 ~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a  136 (266)
T PRK06921        103 VEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA  136 (266)
T ss_pred             HHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence            35666553   23456789999999999999855

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=88.28  E-value=0.19  Score=44.20  Aligned_cols=29  Identities=28%  Similarity=0.287  Sum_probs=22.6

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +++..++++. +.|+..|.||||||.++.-
T Consensus       164 ~~L~~av~~r-~NILisGGTGSGKTTlLNa  192 (355)
T COG4962         164 KFLRRAVGIR-CNILISGGTGSGKTTLLNA  192 (355)
T ss_pred             HHHHHHHhhc-eeEEEeCCCCCCHHHHHHH
Confidence            4555556655 8899999999999998843

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=88.08  E-value=0.32  Score=44.96  Aligned_cols=49  Identities=22%  Similarity=0.356  Sum_probs=30.6

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHh--ccc--cCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAA--FEG--YNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v--~~G--~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |+||.... ..+++..|..+ ..+.+..  ..|  +| -++-||++|+||||.+..
T Consensus       108 ~tFdnFv~-g~~N~~a~~~a-~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A  160 (445)
T PRK12422        108 MTFANFLV-TPENDLPHRIL-QEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA  160 (445)
T ss_pred             ccccceee-CCcHHHHHHHH-HHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence            57887664 34555555443 3444433  223  23 467899999999998854

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=87.94  E-value=0.17  Score=41.70  Aligned_cols=29  Identities=28%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+.+.+-.|.+.+++.||+.|+|||..|.
T Consensus        10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~   38 (234)
T PF01637_consen   10 KLKELLESGPSQHILLYGPRGSGKTSLLK   38 (234)
T ss_dssp             HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred             HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence            34444445668899999999999999873

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF12846 AAA_10: AAA-like domain

Probab=87.75  E-value=0.14  Score=44.08  Aligned_cols=19  Identities=42%  Similarity=0.590  Sum_probs=16.4

Q ss_pred             CeeEeeccCcCCCceeEec
Q psy37            52 NACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~   70 (279)
                      |..++..|.||||||++|.
T Consensus         1 n~h~~i~G~tGsGKT~~~~   19 (304)
T PF12846_consen    1 NPHTLILGKTGSGKTTLLK   19 (304)
T ss_pred             CCeEEEECCCCCcHHHHHH
Confidence            5568899999999999884

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=87.63  E-value=0.35  Score=37.80  Aligned_cols=28  Identities=36%  Similarity=0.558  Sum_probs=21.5

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .+++.+.+|.+  ++..|+||+|||.....
T Consensus         6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~   33 (169)
T PF00270_consen    6 EAIEAIISGKN--VLISAPTGSGKTLAYIL   33 (169)
T ss_dssp             HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred             HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence            34555666766  88999999999998754

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=87.49  E-value=0.17  Score=40.22  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=13.5

Q ss_pred             ccccCeeEeeccCcCCCceeEe
Q psy37            48 FEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        48 ~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..|-..+++.+|.+|+|||+.+
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll   41 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLL   41 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHH
Confidence            4677788999999999999987

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=87.18  E-value=0.27  Score=43.35  Aligned_cols=28  Identities=32%  Similarity=0.393  Sum_probs=20.6

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .++..++.+. ..|+..|+||||||.+|.
T Consensus       139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~  166 (319)
T PRK13894        139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN  166 (319)
T ss_pred             HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence            5666666654 556666999999998764

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=87.03  E-value=0.28  Score=40.39  Aligned_cols=29  Identities=24%  Similarity=0.461  Sum_probs=18.9

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..|..++.-.. ..+..|+.|||||+|+..
T Consensus         8 ~Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~   36 (236)
T PF13086_consen    8 EAIQSALSSNG-ITLIQGPPGTGKTTTLAS   36 (236)
T ss_dssp             HHHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred             HHHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence            34556664433 566689999999998854

>PHA00729 NTP-binding motif containing protein

Probab=86.78  E-value=0.47  Score=39.57  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=23.5

Q ss_pred             HHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            40 GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        40 ~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ++.+++.+..|--..|+.+|.+|+||||....
T Consensus         5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a   36 (226)
T PHA00729          5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK   36 (226)
T ss_pred             HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence            34566666654446899999999999997644

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=86.65  E-value=0.16  Score=41.42  Aligned_cols=16  Identities=44%  Similarity=0.586  Sum_probs=14.6

Q ss_pred             eEeeccCcCCCceeEe
Q psy37            54 CVFAYGQTGSGKTFTM   69 (279)
Q Consensus        54 ~v~~yG~tgSGKT~Tl   69 (279)
                      .|+..|+||+|||.|+
T Consensus         3 vi~lvGptGvGKTTt~   18 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTI   18 (196)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEECCCCCchHhHH
Confidence            5788999999999998

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0242|consensus

Probab=86.28  E-value=0.83  Score=44.44  Aligned_cols=52  Identities=46%  Similarity=0.693  Sum_probs=45.6

Q ss_pred             CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37            96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA  147 (279)
Q Consensus        96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~  147 (279)
                      +..+.......++|.....+++.++++++|..|+.|++.++|++++|.|...
T Consensus        58 D~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~  109 (675)
T KOG0242|consen   58 DRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSED  109 (675)
T ss_pred             eeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCC
Confidence            4444455678899999999999999999999999999999999999999854

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=86.22  E-value=0.4  Score=42.26  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=17.3

Q ss_pred             cccCeeEeeccCcCCCceeEec
Q psy37            49 EGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .|....++.||++|+|||+++.
T Consensus        33 ~~~~~~lll~Gp~GtGKT~la~   54 (337)
T PRK12402         33 SPNLPHLLVQGPPGSGKTAAVR   54 (337)
T ss_pred             CCCCceEEEECCCCCCHHHHHH
Confidence            4444468899999999998773

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=86.20  E-value=0.36  Score=41.10  Aligned_cols=46  Identities=13%  Similarity=0.276  Sum_probs=27.4

Q ss_pred             CCCCCCCHHHHHHHhHHH-H---HHHhccccCeeEeeccCcCCCceeEec
Q psy37            25 SSPQFASQEQVFNDLGMD-V---VDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        25 vf~~~~~q~~vy~~~~~~-l---v~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      -|........+|..-... +   ++..++.....++.+|++|+|||+.+.
T Consensus        12 pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~   61 (269)
T TIGR03015        12 PFQLLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR   61 (269)
T ss_pred             CCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence            445444444444443322 2   223334445678899999999999874

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=86.02  E-value=0.92  Score=40.07  Aligned_cols=47  Identities=43%  Similarity=0.698  Sum_probs=42.3

Q ss_pred             cccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           100 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       100 ~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      .....+.++|+..+.+++..++++|+.+++.+++.++|+++++.|..
T Consensus        60 ~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~  106 (322)
T cd01367          60 DEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDE  106 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcC
Confidence            34467889999999999999999999999999999999999999865

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=85.98  E-value=1.1  Score=40.00  Aligned_cols=48  Identities=35%  Similarity=0.583  Sum_probs=43.0

Q ss_pred             CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37            99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus        99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      +.....+.++|+..+.+++..++++|+.+++.+++.++|+++++.|..
T Consensus        63 f~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~  110 (345)
T cd01368          63 FGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP  110 (345)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCC
Confidence            344578899999998999999999999999999999999999999865

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=85.61  E-value=0.29  Score=36.44  Aligned_cols=15  Identities=33%  Similarity=0.543  Sum_probs=13.6

Q ss_pred             EeeccCcCCCceeEe
Q psy37            55 VFAYGQTGSGKTFTM   69 (279)
Q Consensus        55 v~~yG~tgSGKT~Tl   69 (279)
                      |+-+|+.|+|||+..
T Consensus         1 ill~G~~G~GKT~l~   15 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLA   15 (132)
T ss_dssp             EEEESSTTSSHHHHH
T ss_pred             CEEECcCCCCeeHHH
Confidence            678999999999986

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN03188 kinesin-12 family protein; Provisional

Probab=85.48  E-value=0.88  Score=46.49  Aligned_cols=48  Identities=46%  Similarity=0.817  Sum_probs=43.2

Q ss_pred             CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37            99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus        99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      +.....+.++|+..+.+++..++++||.+|+.|++.++|+++++.|..
T Consensus       140 Fdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~  187 (1320)
T PLN03188        140 ADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPA  187 (1320)
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCC
Confidence            334577889999999999999999999999999999999999999964

>PF13479 AAA_24: AAA domain

Probab=85.43  E-value=0.28  Score=40.61  Aligned_cols=20  Identities=35%  Similarity=0.512  Sum_probs=16.7

Q ss_pred             CeeEeeccCcCCCceeEecC
Q psy37            52 NACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +..++.||++|+|||++...
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~   22 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAAS   22 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHh
Confidence            45789999999999987654

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=85.35  E-value=0.29  Score=42.80  Aligned_cols=30  Identities=33%  Similarity=0.375  Sum_probs=22.5

Q ss_pred             HHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            41 MDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        41 ~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .+++..++.+ ...|+..|+||||||.+|..
T Consensus       122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~a  151 (299)
T TIGR02782       122 RDVLREAVLA-RKNILVVGGTGSGKTTLANA  151 (299)
T ss_pred             HHHHHHHHHc-CCeEEEECCCCCCHHHHHHH
Confidence            3566666664 45688999999999999743

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=85.29  E-value=0.82  Score=39.60  Aligned_cols=19  Identities=37%  Similarity=0.476  Sum_probs=15.7

Q ss_pred             eeEeeccCcCCCceeEecC
Q psy37            53 ACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        53 ~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..|+..|++|+|||+|+..
T Consensus       195 ~vi~~vGptGvGKTTt~~k  213 (282)
T TIGR03499       195 GVIALVGPTGVGKTTTLAK  213 (282)
T ss_pred             eEEEEECCCCCCHHHHHHH
Confidence            3677779999999999844

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=85.25  E-value=0.73  Score=41.79  Aligned_cols=19  Identities=37%  Similarity=0.490  Sum_probs=16.8

Q ss_pred             CeeEeeccCcCCCceeEec
Q psy37            52 NACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ...|+.+|++|+|||.|+.
T Consensus       174 ~~vi~lvGptGvGKTTT~a  192 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIA  192 (388)
T ss_pred             CeEEEEECCCCCCHHHHHH
Confidence            4689999999999999983

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=84.81  E-value=0.33  Score=35.80  Aligned_cols=16  Identities=31%  Similarity=0.497  Sum_probs=13.9

Q ss_pred             eEeeccCcCCCceeEe
Q psy37            54 CVFAYGQTGSGKTFTM   69 (279)
Q Consensus        54 ~v~~yG~tgSGKT~Tl   69 (279)
                      .|+..|++|||||+..
T Consensus         1 vI~I~G~~gsGKST~a   16 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLA   16 (121)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             CEEEECCCCCCHHHHH
Confidence            4788999999999875

...

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=84.78  E-value=0.57  Score=46.68  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=17.8

Q ss_pred             cccCeeEeeccCcCCCceeEec
Q psy37            49 EGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .|-+.+++.||++|+|||.|+.
T Consensus       778 sgpnnvLYIyG~PGTGKTATVK  799 (1164)
T PTZ00112        778 SGSNQILYISGMPGTGKTATVY  799 (1164)
T ss_pred             CCCCceEEEECCCCCCHHHHHH
Confidence            3455677899999999999983

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=84.71  E-value=0.5  Score=38.85  Aligned_cols=20  Identities=40%  Similarity=0.649  Sum_probs=14.3

Q ss_pred             cCeeEeeccCcCCCceeEec
Q psy37            51 YNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        51 ~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+-.+++.|+.|||||+.-.
T Consensus        18 ~~~~v~~~G~AGTGKT~LA~   37 (205)
T PF02562_consen   18 NNDLVIVNGPAGTGKTFLAL   37 (205)
T ss_dssp             H-SEEEEE--TTSSTTHHHH
T ss_pred             hCCeEEEECCCCCcHHHHHH
Confidence            56689999999999998654

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=84.68  E-value=0.31  Score=37.08  Aligned_cols=15  Identities=33%  Similarity=0.552  Sum_probs=13.5

Q ss_pred             EeeccCcCCCceeEe
Q psy37            55 VFAYGQTGSGKTFTM   69 (279)
Q Consensus        55 v~~yG~tgSGKT~Tl   69 (279)
                      |+..|.+|||||+..
T Consensus         2 ii~~G~pgsGKSt~a   16 (143)
T PF13671_consen    2 IILCGPPGSGKSTLA   16 (143)
T ss_dssp             EEEEESTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            789999999999875

...

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=84.43  E-value=1.6  Score=39.00  Aligned_cols=48  Identities=42%  Similarity=0.747  Sum_probs=43.0

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAR  148 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~~  148 (279)
                      ....+.++|+..+.+++..++++|+.+++.+++.++|+++++.|....
T Consensus        58 ~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~  105 (352)
T cd01364          58 PEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTD  105 (352)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcc
Confidence            446789999999999999999999999999999999999999986543

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA

Probab=84.18  E-value=0.26  Score=42.76  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=16.7

Q ss_pred             cCeeEeeccCcCCCceeEecC
Q psy37            51 YNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        51 ~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .++.++..|..|||||+||..
T Consensus        12 ~~~~~lV~a~AGSGKT~~l~~   32 (315)
T PF00580_consen   12 TEGPLLVNAGAGSGKTTTLLE   32 (315)
T ss_dssp             -SSEEEEEE-TTSSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCchHHHHH
Confidence            677888889999999999954

THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=84.18  E-value=0.31  Score=41.40  Aligned_cols=20  Identities=35%  Similarity=0.481  Sum_probs=16.6

Q ss_pred             ccCeeEeeccCcCCCceeEe
Q psy37            50 GYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        50 G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      =..-.|+.||++|+|||++-
T Consensus       149 WAPknVLFyGppGTGKTm~A  168 (368)
T COG1223         149 WAPKNVLFYGPPGTGKTMMA  168 (368)
T ss_pred             cCcceeEEECCCCccHHHHH
Confidence            34568999999999999864

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=84.15  E-value=0.44  Score=38.40  Aligned_cols=29  Identities=31%  Similarity=0.308  Sum_probs=21.3

Q ss_pred             HHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            41 MDVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        41 ~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+++...++. ...++..|++|||||.+|.
T Consensus        15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~   43 (186)
T cd01130          15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN   43 (186)
T ss_pred             HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence            3566666654 3567888999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=84.09  E-value=1.4  Score=39.14  Aligned_cols=51  Identities=53%  Similarity=0.858  Sum_probs=44.4

Q ss_pred             CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37            96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA  147 (279)
Q Consensus        96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~  147 (279)
                      +..+.. ..++++|+..+.+++..++++|+.+++.+++.++|+++++.|...
T Consensus        53 D~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~  103 (334)
T cd01375          53 DGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTE  103 (334)
T ss_pred             CcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCC
Confidence            333444 789999999999999999999999999999999999999998643

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=84.02  E-value=0.42  Score=42.17  Aligned_cols=29  Identities=31%  Similarity=0.384  Sum_probs=21.5

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +++..++.+. ..|+..|+||||||.+|..
T Consensus       135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~a  163 (323)
T PRK13833        135 SVIRSAIDSR-LNIVISGGTGSGKTTLANA  163 (323)
T ss_pred             HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence            5555666543 3588999999999999844

>KOG0239|consensus

Probab=83.88  E-value=1.1  Score=43.61  Aligned_cols=50  Identities=54%  Similarity=0.979  Sum_probs=41.6

Q ss_pred             cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37            95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS  145 (279)
Q Consensus        95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~  145 (279)
                      ++..+....++.++|.+. -.++.+++++||.|++.+++.+++++++|.|.
T Consensus       364 fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~  413 (670)
T KOG0239|consen  364 FDKVFGPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP  413 (670)
T ss_pred             eeeecCCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCC
Confidence            344455667788888877 45667999999999999999999999999996

>PRK06547 hypothetical protein; Provisional

Probab=83.59  E-value=0.87  Score=36.33  Aligned_cols=27  Identities=30%  Similarity=0.334  Sum_probs=19.5

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ++..+..+.---|+..|.+|||||+.-
T Consensus         6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a   32 (172)
T PRK06547          6 IAARLCGGGMITVLIDGRSGSGKTTLA   32 (172)
T ss_pred             HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence            444555555666777799999999865

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=83.43  E-value=0.39  Score=38.33  Aligned_cols=17  Identities=29%  Similarity=0.352  Sum_probs=15.0

Q ss_pred             eeEeeccCcCCCceeEe
Q psy37            53 ACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        53 ~~v~~yG~tgSGKT~Tl   69 (279)
                      +.++.+|+||+|||++.
T Consensus         4 ~~~ll~GpsGvGKT~la   20 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELA   20 (171)
T ss_dssp             EEEEEESSTTSSHHHHH
T ss_pred             EEEEEECCCCCCHHHHH
Confidence            57899999999999975

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=83.14  E-value=0.38  Score=43.74  Aligned_cols=51  Identities=22%  Similarity=0.327  Sum_probs=29.2

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--c--cCeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE--G--YNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G--~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      +.||.+-+-+..-+++.+.+..|+... .+.  |  ....|+.||++|+|||+..-
T Consensus       128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAk  183 (389)
T PRK03992        128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAK  183 (389)
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHH
Confidence            344444444444455555444444432 221  2  24469999999999998763

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=83.05  E-value=0.53  Score=41.82  Aligned_cols=30  Identities=20%  Similarity=0.202  Sum_probs=21.6

Q ss_pred             HHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            41 MDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        41 ~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..++..++.+. ..|+..|+||||||.+|..
T Consensus       150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~a  179 (332)
T PRK13900        150 KEFLEHAVISK-KNIIISGGTSTGKTTFTNA  179 (332)
T ss_pred             HHHHHHHHHcC-CcEEEECCCCCCHHHHHHH
Confidence            35555555543 4588889999999999844

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=83.00  E-value=0.65  Score=45.52  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             ccccCeeEeeccCcCCCceeEe
Q psy37            48 FEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        48 ~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      -.+.|.||+..|.+|||||.+.
T Consensus        81 ~~~~~Q~IiisGeSGsGKTe~~  102 (689)
T PF00063_consen   81 RTRQNQSIIISGESGSGKTETS  102 (689)
T ss_dssp             HHTSEEEEEEEESTTSSHHHHH
T ss_pred             ccccccceeeccccccccccch
Confidence            3689999999999999999985

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=82.87  E-value=1.8  Score=38.37  Aligned_cols=47  Identities=51%  Similarity=0.892  Sum_probs=42.4

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA  147 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~  147 (279)
                      ....+.++|+....+++..++++|+.+++.+++.++|+++++.|...
T Consensus        58 ~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~  104 (333)
T cd01371          58 PNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE  104 (333)
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCC
Confidence            34678899999999999999999999999999999999999998654

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=82.44  E-value=0.78  Score=39.53  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=20.2

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +++..+. .+--|+..|++|+|||-++..
T Consensus        25 ll~~l~~-~~~pvLl~G~~GtGKT~li~~   52 (272)
T PF12775_consen   25 LLDLLLS-NGRPVLLVGPSGTGKTSLIQN   52 (272)
T ss_dssp             HHHHHHH-CTEEEEEESSTTSSHHHHHHH
T ss_pred             HHHHHHH-cCCcEEEECCCCCchhHHHHh
Confidence            3444443 366789999999999998743

>smart00242 MYSc Myosin

Probab=82.38  E-value=0.89  Score=44.42  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=26.0

Q ss_pred             HHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            33 EQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        33 ~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      -.||.-.-...-.-+-.|.|.||+.-|.+|||||.|.
T Consensus        73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~  109 (677)
T smart00242       73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT  109 (677)
T ss_pred             CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence            3455544332222233799999999999999999976

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=82.25  E-value=0.25  Score=44.45  Aligned_cols=20  Identities=35%  Similarity=0.579  Sum_probs=16.3

Q ss_pred             CeeEeeccCcCCCceeEecC
Q psy37            52 NACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ...|+.||++|+|||++.-.
T Consensus       156 p~gvLL~GppGtGKT~laka  175 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKA  175 (364)
T ss_pred             CceEEEECCCCCCHHHHHHH
Confidence            34599999999999988743

Many proteins may score above the trusted cutoff because an internal

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=82.06  E-value=0.62  Score=36.86  Aligned_cols=27  Identities=33%  Similarity=0.460  Sum_probs=18.7

Q ss_pred             HHHhccccCeeEeeccCcCCCceeEecC
Q psy37            44 VDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        44 v~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +..+.++. ..++..|++|||||.++..
T Consensus        17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~~   43 (201)
T smart00487       17 IEALLSGL-RDVILAAPTGSGKTLAALL   43 (201)
T ss_pred             HHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence            34444432 5667889999999997754

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.97  E-value=0.52  Score=41.23  Aligned_cols=19  Identities=42%  Similarity=0.572  Sum_probs=15.8

Q ss_pred             cccCeeEeeccCcCCCcee
Q psy37            49 EGYNACVFAYGQTGSGKTF   67 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~   67 (279)
                      +=.-+.|+..|+||||||+
T Consensus        94 EL~KSNILLiGPTGsGKTl  112 (408)
T COG1219          94 ELSKSNILLIGPTGSGKTL  112 (408)
T ss_pred             eeeeccEEEECCCCCcHHH
Confidence            3445789999999999997

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=81.85  E-value=0.61  Score=41.99  Aligned_cols=37  Identities=24%  Similarity=0.326  Sum_probs=28.2

Q ss_pred             CHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeE
Q psy37            31 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        31 ~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      .|+++...- +|+=.-+-.|.-.+.|.||+.|+|||..
T Consensus        28 GQ~HLlg~~-~~lrr~v~~~~l~SmIl~GPPG~GKTTl   64 (436)
T COG2256          28 GQEHLLGEG-KPLRRAVEAGHLHSMILWGPPGTGKTTL   64 (436)
T ss_pred             ChHhhhCCC-chHHHHHhcCCCceeEEECCCCCCHHHH
Confidence            678877663 3555455578889999999999999963

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=81.74  E-value=0.68  Score=40.55  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=17.3

Q ss_pred             ccc-CeeEeeccCcCCCceeEecC
Q psy37            49 EGY-NACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        49 ~G~-n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +|. ...++-||++|+|||+.+..
T Consensus        39 ~~~~~~~lll~G~~G~GKT~la~~   62 (316)
T PHA02544         39 KGRIPNMLLHSPSPGTGKTTVAKA   62 (316)
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHH
Confidence            454 45666699999999998744

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=81.63  E-value=2.2  Score=35.65  Aligned_cols=41  Identities=29%  Similarity=0.356  Sum_probs=27.1

Q ss_pred             CCCCCHHHHHHHhHHHHHHHhcc--ccCeeEeeccCcCCCceeE
Q psy37            27 PQFASQEQVFNDLGMDVVDAAFE--GYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        27 ~~~~~q~~vy~~~~~~lv~~v~~--G~n~~v~~yG~tgSGKT~T   68 (279)
                      ++-..|+++-+.. +.+++.+..  ..-..++-||+.|.|||..
T Consensus        24 ~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL   66 (233)
T PF05496_consen   24 DEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTL   66 (233)
T ss_dssp             CCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred             HHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence            4556899998775 367777653  3345789999999999863

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PLN03025 replication factor C subunit; Provisional

Probab=81.50  E-value=0.7  Score=40.70  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=17.7

Q ss_pred             cccCeeEeeccCcCCCceeEecC
Q psy37            49 EGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .|.-..++-||+.|+|||++...
T Consensus        31 ~~~~~~lll~Gp~G~GKTtla~~   53 (319)
T PLN03025         31 DGNMPNLILSGPPGTGKTTSILA   53 (319)
T ss_pred             cCCCceEEEECCCCCCHHHHHHH
Confidence            44445578899999999998753

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=81.43  E-value=1.1  Score=43.83  Aligned_cols=21  Identities=38%  Similarity=0.635  Sum_probs=19.7

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|.|.||+.-|.+|||||.|.
T Consensus        85 ~~~~QsIiisGESGaGKTe~~  105 (674)
T cd01384          85 EGKSQSILVSGESGAGKTETT  105 (674)
T ss_pred             cCCCceEEEECCCCCCchhHH
Confidence            699999999999999999975

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>KOG1803|consensus

Probab=81.38  E-value=1.5  Score=41.43  Aligned_cols=28  Identities=29%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ..|...++-. --.+-.|+.|+|||||+.
T Consensus       192 ~Av~~~~~~k-~l~~I~GPPGTGKT~Tlv  219 (649)
T KOG1803|consen  192 AAVSFAINNK-DLLIIHGPPGTGKTRTLV  219 (649)
T ss_pred             HHHHHHhccC-CceEeeCCCCCCceeeHH
Confidence            3444444444 556779999999999983

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=81.37  E-value=2.2  Score=38.00  Aligned_cols=46  Identities=57%  Similarity=0.778  Sum_probs=41.8

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ......++|+..+.+++..++.+|+.+++.+++.++|+++++.|..
T Consensus        50 ~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~   95 (341)
T cd01372          50 PSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAF   95 (341)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCC
Confidence            3467889999999999999999999999999999999999998864

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=81.24  E-value=1.3  Score=33.39  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=17.3

Q ss_pred             HHHHHhccc----cCeeEeeccCcCCCceeE
Q psy37            42 DVVDAAFEG----YNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        42 ~lv~~v~~G----~n~~v~~yG~tgSGKT~T   68 (279)
                      +.|...+..    -.-.+--.|+||+||||+
T Consensus        39 ~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v   69 (127)
T PF06309_consen   39 NAIKGHLANPNPRKPLVLSFHGWTGTGKNFV   69 (127)
T ss_pred             HHHHHHHcCCCCCCCEEEEeecCCCCcHHHH
Confidence            445455533    222455679999999995

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=81.13  E-value=1.2  Score=43.38  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|.|.||+.-|.+|||||.|.
T Consensus        89 ~~~~QsIiisGESGaGKTe~~  109 (677)
T cd01383          89 DEVNQSIIISGESGAGKTETA  109 (677)
T ss_pred             cCCCceEEEecCCCCCcchHH
Confidence            699999999999999999975

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=81.08  E-value=1.3  Score=43.27  Aligned_cols=21  Identities=38%  Similarity=0.694  Sum_probs=19.7

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|.|.||+.-|.+|||||.|.
T Consensus        83 ~~~~QsIiisGESGaGKTes~  103 (671)
T cd01381          83 EKKNQCIIISGESGAGKTEST  103 (671)
T ss_pred             cCCCceEEEEcCCCCCeehHH
Confidence            699999999999999999975

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=80.68  E-value=1.2  Score=43.69  Aligned_cols=21  Identities=38%  Similarity=0.675  Sum_probs=19.7

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|.|.||+.-|.+|||||.|.
T Consensus        91 ~~~~QsIiisGESGAGKTet~  111 (692)
T cd01385          91 KKVNQCIVISGESGSGKTEST  111 (692)
T ss_pred             cCCCceEEEecCCCCCchHHH
Confidence            699999999999999999976

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=80.63  E-value=1.1  Score=40.56  Aligned_cols=38  Identities=24%  Similarity=0.289  Sum_probs=24.3

Q ss_pred             HHHHHHHhHHHHHHHhccc----cCeeEeeccCcCCCceeEe
Q psy37            32 QEQVFNDLGMDVVDAAFEG----YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        32 q~~vy~~~~~~lv~~v~~G----~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ....|.+...-++..+.+-    ...-|.-.||||-|||.|+
T Consensus       179 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl  220 (407)
T COG1419         179 DLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL  220 (407)
T ss_pred             hhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence            3334444443344444433    2667888999999999998

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=80.49  E-value=0.39  Score=39.24  Aligned_cols=18  Identities=33%  Similarity=0.490  Sum_probs=13.6

Q ss_pred             eeEeeccCcCCCceeEec
Q psy37            53 ACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        53 ~~v~~yG~tgSGKT~Tl~   70 (279)
                      ..++.+|++|||||.+|.
T Consensus        39 ~h~li~G~tgsGKS~~l~   56 (205)
T PF01580_consen   39 PHLLIAGATGSGKSTLLR   56 (205)
T ss_dssp             -SEEEE--TTSSHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHH
Confidence            378999999999999884

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=80.46  E-value=0.45  Score=42.43  Aligned_cols=29  Identities=28%  Similarity=0.265  Sum_probs=20.9

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .++..++. ....|+..|+||||||.+|..
T Consensus       153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~a  181 (344)
T PRK13851        153 AFLHACVV-GRLTMLLCGPTGSGKTTMSKT  181 (344)
T ss_pred             HHHHHHHH-cCCeEEEECCCCccHHHHHHH
Confidence            45555554 244588889999999998854

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=80.23  E-value=0.52  Score=42.47  Aligned_cols=20  Identities=35%  Similarity=0.368  Sum_probs=17.0

Q ss_pred             CeeEeeccCcCCCceeEecC
Q psy37            52 NACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ...++..|++|+|||+|+.-
T Consensus       137 g~ii~lvGptGvGKTTtiak  156 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAK  156 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHH
Confidence            46888999999999999843

>cd00124 MYSc Myosin motor domain

Probab=80.13  E-value=1.2  Score=43.70  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.6

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|.|.||+.-|.+|||||.+.
T Consensus        83 ~~~~QsIiisGESGaGKTe~~  103 (679)
T cd00124          83 DRRNQSIIISGESGAGKTENT  103 (679)
T ss_pred             cCCCceEEEecCCCCCchHHH
Confidence            699999999999999999875

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=80.13  E-value=1.1  Score=39.04  Aligned_cols=40  Identities=30%  Similarity=0.318  Sum_probs=25.6

Q ss_pred             CCHHHHHHHhHHHHHHHhc--cccCeeEeeccCcCCCceeEec
Q psy37            30 ASQEQVFNDLGMDVVDAAF--EGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        30 ~~q~~vy~~~~~~lv~~v~--~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ..|+++-+.+. ..+....  .+....++-||++|+|||+...
T Consensus         7 iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~   48 (305)
T TIGR00635         7 IGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLAH   48 (305)
T ss_pred             cCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence            46777766543 3443332  2323457889999999999774

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=80.12  E-value=1.1  Score=43.79  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             ccccCeeEeeccCcCCCceeEe
Q psy37            48 FEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        48 ~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      -.+.|.||+.-|.+|||||.+.
T Consensus        87 ~~~~~QsIiiSGESGAGKTes~  108 (693)
T cd01377          87 QDRENQSILITGESGAGKTENT  108 (693)
T ss_pred             hcCCCceEEEEcCCCCCchHHH
Confidence            3699999999999999999865

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=80.07  E-value=1.4  Score=42.94  Aligned_cols=21  Identities=43%  Similarity=0.651  Sum_probs=19.7

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|.|.||+.-|.+|||||.|.
T Consensus        84 ~~~~QsIiisGESGaGKTe~~  104 (677)
T cd01387          84 AKQNQCVIISGESGSGKTEAT  104 (677)
T ss_pred             cCCCceEEEEcCCCCCeehHH
Confidence            799999999999999999975

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=80.05  E-value=1.3  Score=43.17  Aligned_cols=21  Identities=43%  Similarity=0.697  Sum_probs=19.8

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|.|.||+.-|.+|||||.|.
T Consensus        83 ~~~~QsIiisGESGaGKTe~~  103 (674)
T cd01378          83 ENENQCVIISGESGAGKTEAA  103 (674)
T ss_pred             cCCCceEEEEcCCCCCcchHH
Confidence            699999999999999999976

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	279
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		3e-31
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		3e-31
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		3e-31
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		4e-31
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		1e-30
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		8e-30
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		2e-28
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		2e-28
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		1e-26
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		1e-25
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		2e-25
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		4e-25
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		1e-23
4a1z_A	368	Eg5-1 Length = 368		1e-23
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		1e-23
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		1e-23
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		1e-23
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		1e-23
4a28_A	368	Eg5-2 Length = 368		1e-23
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		1e-23
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		6e-23
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		3e-22
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		4e-22
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		6e-21
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		3e-19
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		8e-19
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		3e-18
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		3e-18
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		1e-17
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		2e-17
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		3e-17
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		4e-17
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		2e-16
3kin_B	117	Kinesin (Dimeric) From Rattus Norvegicus Length = 1		7e-15
2kin_B	100	Kinesin (Monomeric) From Rattus Norvegicus Length =		1e-14
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		1e-14
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		1e-14
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		1e-14
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		1e-14
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		1e-14
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		2e-14
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		3e-14
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		5e-14
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		5e-13
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		9e-13
1v8j_A	410	The Crystal Structure Of The Minimal Functional Dom		3e-12
2heh_A	387	Crystal Structure Of The Kif2c Motor Domain (Casp T		4e-12
3edl_D	331	Kinesin13-Microtubule Ring Complex Length = 331		4e-12
1ry6_A	360	Crystal Structure Of Internal Kinesin Motor Domain		2e-11
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		3e-11
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		5e-11
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		9e-11
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		1e-10
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		1e-10
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		1e-10
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		2e-10
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		5e-10
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		6e-09
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		6e-09

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
           G RLKEGA+INKSL TLG VIS+LAE+ +        KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
           NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N  +VN
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
           G RLKEGA+INKSL TLG VIS+LAE+ +        KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
           NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N  +VN
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
           G RLKEGA+INKSL TLG VIS+LAE+ +        KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 278 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 337
Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
           NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N  +VN
Sbjct: 338 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 377

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 8/100 (8%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
           G RLKEGA+INKSL TLG VIS+LAE+ +        KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
           NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N  +VN
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G+RLKE   IN SL  LG+VIS+L +    KST IPYRDS LT LL+DSLGGN+KT+M+A
Sbjct: 272 GERLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVA 328
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH 267
            + PA  N  ETL+TLRYANRAKNI NKP VNEDP   ++RE  
Sbjct: 329 NVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 73/86 (84%), Gaps = 2/86 (2%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTI 220
           AGDRLKEG++INKSL TLG VIS+LA+ S    K+ F+PYRDSVLTWLLKDSLGGNSKT 
Sbjct: 263 AGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTA 322
Query: 221 MIAAISPADVNYSETLSTLRYANRAK 246
           M+A +SPA  NY ETLSTLRYA+RAK
Sbjct: 323 MVATVSPAADNYDETLSTLRYADRAK 348

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 3/101 (2%)
Query: 165 DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 224
           +R KE + IN SL  LG+VI++LA     +ST IPYRDS LT LL+DSLGGN+KTIM+A 
Sbjct: 297 ERPKEASKINLSLSALGNVIAALA---GNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVAT 353
Query: 225 ISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRE 265
           + PA  +Y E+LSTLR+ANRAKNI NKP VNEDP   ++RE
Sbjct: 354 LGPASHSYDESLSTLRFANRAKNIKNKPRVNEDPKDTLLRE 394

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 141/302 (46%), Gaps = 66/302 (21%)
Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           + FTFD  Y   D +S  +   +  F  L    +DA  EG+N+ +FAYGQTG+GKT+TM 
Sbjct: 56  RTFTFDAVY---DQTSCNYGIFQASFKPL----IDAVLEGFNSTIFAYGQTGAGKTWTMG 108
Query: 71  GSKATTDNSPDAHKDFTFDHSYWSFDPSSPQ-----FASQEQVFNDLGMDVV-------- 117
           G+K      P+     +F H + + + SS         S  +++N+   D++        
Sbjct: 109 GNKEEPGAIPN-----SFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPL 163
Query: 118 ----------------------------DAAFEGYNACVFAYGQTGS-GKTFTMMGSKAR 148
                                       D  F   +        T S   +  M+  +  
Sbjct: 164 KEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECS 223
Query: 149 NFGEGKDCV----CSIVE-AG-DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFI---- 198
              E K+ +     ++V+ AG +R  +     ++LV    +  SL+ L    S  +    
Sbjct: 224 EVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT 283
Query: 199 --PYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
             PYRDS LT LL+DSLGGNSKT+M A ISPA  NY ET+STLRYA+RAK I NKP +NE
Sbjct: 284 HIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINE 343
Query: 257 DP 258
           DP
Sbjct: 344 DP 345

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 143/308 (46%), Gaps = 71/308 (23%)
Query: 8   DAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF 67
           D  K F FD  +   + +       + V+ ++   ++D+A +GYN  +FAYGQT SGKT+
Sbjct: 41  DGSKSFNFDRVFHGNETT-------KNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTY 93
Query: 68  TMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAA------- 120
           TMMGS+      P A  D  F       D       S  +++N+   D++          
Sbjct: 94  TMMGSEDHLGVIPRAIHDI-FQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLI 152
Query: 121 -FEGYNACVFA--------------------------YGQTG----SGKTFTM--MGSKA 147
             E  N  V+                           YG+T     S ++ T+  M  ++
Sbjct: 153 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILES 212
Query: 148 RNFGEGKDCVCSIV-------------------EAGDRLKEGAHINKSLVTLGSVISSLA 188
           R  GE  +C  S+                     AG RLKEG +IN+SL  LG VI  L+
Sbjct: 213 REKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLS 272
Query: 189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
           +   +   FI YRDS LT +L++SLGGN+KT +I  I+P  V++ ETL+ L++A+ AK +
Sbjct: 273 D--GQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYM 328
Query: 249 INKPTVNE 256
            N P VNE
Sbjct: 329 KNTPYVNE 336

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 140/324 (43%), Gaps = 81/324 (25%)
Query: 1   ATTDNSPDAHKDFTFDHSYWSFDPSSPQF--------ASQEQVFNDLGMDVVDAAFEGYN 52
           A   N+  +  +FT +H  W  D +            A+Q+ VF D    +V +A +GYN
Sbjct: 23  AKERNAIRSVDEFTVEH-LWKDDKAKQHMYDRVFDGNATQDDVFEDTKY-LVQSAVDGYN 80
Query: 53  ACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDF----TFDHSYWSFDPSSPQFASQEQV 108
            C+FAYGQTGSGKTFT+ G+ +    +P A  +       D + +SF   +      +  
Sbjct: 81  VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDT 140
Query: 109 FNDL------------------GMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKARNF 150
             DL                  GM  V+      N  V +       KT    GS+ R+ 
Sbjct: 141 LVDLLLPKQAKRLKLDIKKDSKGMVSVE------NVTVVSISTYEELKTIIQRGSEQRHT 194
Query: 151 ---------GEGKDCVCSIVEA--------------------GDRLK----------EGA 171
                          V  I+E+                     +R+K          E  
Sbjct: 195 TGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQ 254
Query: 172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVN 231
            INKSL  LG VIS+L+      +  IPYR+  LT L+ DSLGGN+KT+M   ISPA+ N
Sbjct: 255 SINKSLSALGDVISALSS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESN 310
Query: 232 YSETLSTLRYANRAKNIINKPTVN 255
             ET ++L YA+R ++I+N P+ N
Sbjct: 311 LDETHNSLTYASRVRSIVNDPSKN 334

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 77/122 (63%), Gaps = 20/122 (16%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKS----------------- 195
           G +   S    G RL+EG++INKSL TLG VI++LA+  +  S                 
Sbjct: 302 GSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPA 361
Query: 196 -TFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTV 254
            + +PYRDSVLTWLLKDSLGGNSKT MIA ISP D  Y ETLSTLRYA++AK I  +  V
Sbjct: 362 NSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTD--YDETLSTLRYADQAKRIRTRAVV 419
Query: 255 NE 256
           N+
Sbjct: 420 NQ 421

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 67/281 (23%)
Query: 26  SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKD 85
           SPQ ASQ+ VF ++   +V +  +G+N C+FAYGQTG+GKT+TM G   T +N     + 
Sbjct: 57  SPQ-ASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG---TAENPGINQRA 111
Query: 86  FTFDHSYWSFDPSSPQF---ASQEQVFNDLGMDVV--------------DAAFEGYNAC- 127
                S      S  ++    S  +++N++  D++              D + + Y    
Sbjct: 112 LQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGL 171
Query: 128 -------------VFAYGQTGSGKTFTMMGS-KARNFG------EGKDCVCSIVEAGD-- 165
                        VF +G T     FT +    +R+         G DC   +   G   
Sbjct: 172 TEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLN 231
Query: 166 ------------------RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTW 207
                             RL+E  HINKSL  LG VI++L      +   +P+R+S LT+
Sbjct: 232 LVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL----RSRQGHVPFRNSKLTY 287
Query: 208 LLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
           LL+DSL G+SKT+M+  +SP + N SETL +L++A R +++
Sbjct: 288 LLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
           SPA +N  ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
           SPA +N  ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 283 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 338
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
           SPA +N  ETLSTL YA+RAKNI+NKP VN+
Sbjct: 339 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
           SPA +N  ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 272 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 327
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
           SPA +N  ETLSTL YA+RAKNI+NKP VN+
Sbjct: 328 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 280 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 335
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
           SPA +N  ETLSTL YA+RAKNI+NKP VN+
Sbjct: 336 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
           SPA +N  ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 70/91 (76%), Gaps = 4/91 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 281 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 336
Query: 226 SPADVNYSETLSTLRYANRAKNIINKPTVNE 256
           SPA +N  ETLSTL YA+RAKNI+NKP VN+
Sbjct: 337 SPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G R  EG +IN+SL+ LG+VI++LA+ S +K+  IPYR+S LT LLKDSLGGN +TIMIA
Sbjct: 272 GTRFVEGTNINRSLLALGNVINALAD-SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIA 330
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
           A+SP+ V Y +T +TL+YANRAK+I
Sbjct: 331 AVSPSSVFYDDTYNTLKYANRAKDI 355

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA I
Sbjct: 266 RAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATI 321
Query: 226 SPADVNYSETLSTLRYANRAKNIINKP 252
           SPA +N  ETLSTL YA+RAKNI+NKP
Sbjct: 322 SPASLNLEETLSTLEYAHRAKNILNKP 348

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
Query: 162 EAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
           E G R++E  +IN+SL+TLG VI++L +    ++  +PYR+S LT LL++SLGG +KT +
Sbjct: 279 EKGIRVRETVNINQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSI 334
Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
           IA ISP   +  ETLSTL YA+RAKNI NKP VN+
Sbjct: 335 IATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
           G + V      G+RLKE   IN SL+ LG+VIS+L +   ++ + IPYRDS +T +LKDS
Sbjct: 252 GSERVLKTGSTGERLKESIQINSSLLALGNVISALGD-PQRRGSHIPYRDSKITRILKDS 310
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246
           LGGN+KT+MIA +SP+  ++ ETL+TL YA+RA+
Sbjct: 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 69/105 (65%), Gaps = 3/105 (2%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
           G + V     +G  L+E   INKSL  LG VI++L +    KS+ +PYRDS LT +L++S
Sbjct: 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD---GKSSHVPYRDSKLTRILQES 294
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNED 257
           LGGNS+T +I   SP+  N +ETLSTLR+  RAK+I NK  VN +
Sbjct: 295 LGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAE 339

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
           G + V      G+  KE   IN SL+ LG+VIS+L +   ++ + IPYRDS +T +LKDS
Sbjct: 252 GSERVLKTGSTGELRKESIQINSSLLALGNVISALGD-PQRRGSNIPYRDSKITRILKDS 310
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246
           LGGN+KT+MIA +SP+  ++ ETL+TL YA+RA+
Sbjct: 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  L E  +INKSL  LG+VIS+LAE     ST++PYRDS +T +L+DSLGGN +T ++ 
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVN 255
             SP+  N SET STL +  RAK I N   VN
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  L E  +INKSL  LG+VIS+LAE     ST++PYRDS +T +L+DSLGGN +T ++ 
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVN 255
             SP+  N SET STL +  RAK I N   VN
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 4/91 (4%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
           AG++LKE   INKSL  LG VI +L+      +  IPYR+  LT L+ DSLGGN+KT+M 
Sbjct: 254 AGNQLKEAQSINKSLSALGDVIGALSS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMF 309
Query: 223 AAISPADVNYSETLSTLRYANRAKNIINKPT 253
             +SPA+ N  ET ++L YA+R + I+N P+
Sbjct: 310 VNVSPAESNLDETYNSLLYASRVRTIVNDPS 340

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  L E  +INKSL  LG+VIS+LA+      T IPYRDS LT +L++SLGGN++T ++ 
Sbjct: 252 GTVLDEAKNINKSLSALGNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIVI 308
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNED 257
             SPA  N SET STL +  RAK + N   VNE+
Sbjct: 309 CCSPASFNESETKSTLDFGRRAKTVKNVVCVNEE 342

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 61/89 (68%), Gaps = 4/89 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           GDRLKE   INKSL  LG VI SL   + K  + +PYR+S LT+LLK SLGGNSKT+M  
Sbjct: 630 GDRLKETQAINKSLSCLGDVIHSL---NLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFV 686
Query: 224 AISPADVNYSETLSTLRYANRAKNI-INK 251
            ISP   + +ET+++LR+A +  N  INK
Sbjct: 687 NISPLTKDLNETINSLRFATKVNNTRINK 715

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  L E  +INKSL  LG+VIS+LAE     ST++PYRDS +T +L+DSLGGN +T ++ 
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
             SP+  N SET STL +  RAK I
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTI 325

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G RLKE   IN SL  LG V+ +L +   +    +PYRDS LT LL+DSLGG++ +I+IA
Sbjct: 267 GLRLKESGAINTSLFVLGKVVDALNQGLPR----VPYRDSKLTRLLQDSLGGSAHSILIA 322
Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
            I+P    Y +T+S L +A R+K +IN+P  NE
Sbjct: 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355

>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 57/82 (69%), Gaps = 3/82 (3%)
Query: 174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYS 233
           NKSL  LG+VIS+LAE  TK  T +PYRDS +T +L+DSLGGN +T ++   SP+  N +
Sbjct: 1   NKSLSALGNVISALAE-GTK--THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57
Query: 234 ETLSTLRYANRAKNIINKPTVN 255
           ET STL +  RAK I N  +VN
Sbjct: 58  ETKSTLMFGQRAKTIKNTVSVN 79

>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVN 231
           +INKSL  LG+VIS+LAE  TK  T +PYRDS +T +L+DSL GN +T ++   SP+  N
Sbjct: 3   NINKSLSALGNVISALAE-GTK--THVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59
Query: 232 YSETLSTLRYANRAKNIINKPTVN 255
            +ET STL +  RAK I N  +VN
Sbjct: 60  EAETKSTLMFGQRAKTIKNTVSVN 83

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
            GDRL+E  +INKSL  LG VI +L +  + K   IP+R+S LT+LL+ SL G+SKT+M 
Sbjct: 268 VGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 326
Query: 223 AAISPADVNYSETLSTLRYANRA 245
             ISP+  + +ETL++LR+A++ 
Sbjct: 327 VNISPSSSHINETLNSLRFASKV 349

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
            GDRL+E  +INKSL  LG VI +L +  + K   IP+R+S LT+LL+ SL G+SKT+M 
Sbjct: 257 VGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 315
Query: 223 AAISPADVNYSETLSTLRYANRA 245
             ISP+  + +ETL++LR+A++ 
Sbjct: 316 VNISPSSSHINETLNSLRFASKV 338

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
            GDRL+E  +INKSL  LG VI +L +  + K   IP+R+S LT+LL+ SL G+SKT+M 
Sbjct: 256 VGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 314
Query: 223 AAISPADVNYSETLSTLRYANRA 245
             ISP+  + +ETL++LR+A++ 
Sbjct: 315 VNISPSSSHINETLNSLRFASKV 337

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
            GDRL+E  +INKSL  LG VI +L +  + K   IP+R+S LT+LL+ SL G+SKT+M 
Sbjct: 257 VGDRLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 315
Query: 223 AAISPADVNYSETLSTLRYANRA 245
             ISP+  + +ETL++LR+A++ 
Sbjct: 316 VNISPSSSHINETLNSLRFASKV 338

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 66/96 (68%), Gaps = 5/96 (5%)
Query: 151 GEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAEL-STKKSTFIPYRDSVLTWLL 209
           G  +  V  +V  GDRL+E  +INKSL  LG VI +L +  STK+   IP+R+S LT+LL
Sbjct: 303 GSERINVSQVV--GDRLRETQNINKSLSALGDVIHALGQPDSTKR--HIPFRNSKLTYLL 358
Query: 210 KDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRA 245
           + SL G+SKT+M   ISP+  + +ETL++LR+A++ 
Sbjct: 359 QYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Query: 165 DRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAA 224
           +RL+E   IN SL TLG VI +L    + K + +PYR+S LT+LL++SLGG++K +M   
Sbjct: 297 ERLRETQAINSSLSTLGLVIMAL----SNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVN 352
Query: 225 ISPADVNYSETLSTLRYANR 244
           ISP + N SE+L++LR+A++
Sbjct: 353 ISPLEENVSESLNSLRFASK 372

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
           G + + S +  G+RL+E   INKSL  LG VI +L     +K   IP+R+S LT+LL+ S
Sbjct: 271 GSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKR-HIPFRNSKLTYLLQYS 329
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
           L G+SKT+M   ISPA ++ +ET+++LR+A++  N
Sbjct: 330 LIGSSKTLMFVNISPAALHLNETINSLRFASKVNN 364

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
            GDRL+E  +I KSL  LG VI +L +  + K   IP+R+S LT+LL+ SL G+SKT+M 
Sbjct: 257 VGDRLRETQNIKKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMF 315
Query: 223 AAISPADVNYSETLSTLRYANRA 245
             ISP+  + +ETL++LR+A++ 
Sbjct: 316 VNISPSSSHINETLNSLRFASKV 338

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 153 GKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS 212
           G + + S    G+RL+E  +INKSL  LG VI +L      K  +IP+R+S LT+LL+ S
Sbjct: 250 GSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKR-YIPFRNSKLTYLLQYS 308
Query: 213 LGGNSKTIMIAAISPADVNYSETLSTLRYANRA 245
           L G+SKT+M   I P   + SETL++LR+A++ 
Sbjct: 309 LVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 227
           EGA INKSL+ L   I +L     +     P+R S LT +L+DS +G NS+T MIA ISP
Sbjct: 344 EGAEINKSLLALKECIRALG----RNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISP 399
Query: 228 ADVNYSETLSTLRYANRAKNI 248
              +   TL+TLRYANR K +
Sbjct: 400 GMASCENTLNTLRYANRVKEL 420

>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 227
           EGA INKSL+ L   I +L +         P+R+S LT +L+DS +G NS+T MIA ISP
Sbjct: 326 EGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP 381
Query: 228 ADVNYSETLSTLRYANRAKNI 248
              +   TL+TLRYA+R K +
Sbjct: 382 GISSCEYTLNTLRYADRVKEL 402

>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 227
           EGA INKSL+ L   I +L +         P+R+S LT +L+DS +G NS+T MIA ISP
Sbjct: 306 EGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISP 361
Query: 228 ADVNYSETLSTLRYANRAKNI 248
              +   TL+TLRYA+R K +
Sbjct: 362 GISSCEYTLNTLRYADRVKEL 382

>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISP 227
           EGA INKSL+ L   I +L +         P+R+S LT +L+DS +G NS+T MIA ISP
Sbjct: 254 EGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP 309
Query: 228 ADVNYSETLSTLRYANRAKNI 248
              +   TL+TLRYA+R K +
Sbjct: 310 GISSCEYTLNTLRYADRVKEL 330

>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 169 EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPA 228
           +GA+IN+SL+ L   I ++          IP+RDS LT +L+D   G SK+IMIA ISP 
Sbjct: 256 DGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPT 311
Query: 229 DVNYSETLSTLRYANRAKN 247
                +TL+TLRY++R KN
Sbjct: 312 ISCCEQTLNTLRYSSRVKN 330

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 168 KEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP 227
           +EG +IN  L+++  V+ S+A       T IPYRDSVLT +L+ SL   S    +A ISP
Sbjct: 259 QEGVNINLGLLSINKVVMSMA----AGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISP 314
Query: 228 ADVNYSETLSTLRYANRAKNI 248
              + SETLSTLR+   AK +
Sbjct: 315 HQCDLSETLSTLRFGTSAKKL 335

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 168 KEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISP 227
           +EG +IN  L+++  V+ S+A       T IPYRDSVLT +L+ SL   S    +A ISP
Sbjct: 259 QEGVNINLGLLSINKVVMSMA----AGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISP 314
Query: 228 ADVNYSETLSTLRYANRAK 246
              + SETLSTLR+   AK
Sbjct: 315 HQCDLSETLSTLRFGTSAK 333

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R+ E  +IN+SL  L +VI +L +    K   IPYR+S LT LL  SLGGNSKT+M   +
Sbjct: 298 RMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 353
Query: 226 SPADVNYSETLSTLRYA 242
           SP    + E++ +LR+A
Sbjct: 354 SPFQDCFQESVKSLRFA 370

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R+ E  +IN+SL  L +VI +L +    K   IPYR+S LT LL  SLGGNSKT+M   +
Sbjct: 312 RMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 367
Query: 226 SPADVNYSETLSTLRYA 242
           SP    + E++ +LR+A
Sbjct: 368 SPFQDCFQESVKSLRFA 384

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R+ E  +IN+SL  L +VI +L +    K   IPYR+S LT LL  SLGGNSKT+M   +
Sbjct: 304 RMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 359
Query: 226 SPADVNYSETLSTLRYA 242
           SP    + E++ +LR+A
Sbjct: 360 SPFQDCFQESVKSLRFA 376

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R+ E  +IN+SL  L +VI +L +    K   IPYR+S LT LL  SLGGNSKT+M   +
Sbjct: 301 RMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 356
Query: 226 SPADVNYSETLSTLRYA 242
           SP    + E++ +LR+A
Sbjct: 357 SPFQDCFQESVKSLRFA 373

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  LKE  +INKSL  L   I +L +   +K   IP+R   LT  LKDSLGGN   +++ 
Sbjct: 278 GQVLKEATYINKSLSFLEQAIIALGD---QKRDHIPFRQCKLTHALKDSLGGNCNMVLVT 334
Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
            I        ETLS+LR+A+R K +
Sbjct: 335 NIYGEAAQLEETLSSLRFASRMKLV 359

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           R+ E  +I +SL  L +VI +L +    K   IPYR+S LT LL  SLGGNSKT+M   +
Sbjct: 301 RMTETKNIKRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 356
Query: 226 SPADVNYSETLSTLRYA 242
           SP    + E++ +LR+A
Sbjct: 357 SPFQDCFQESVKSLRFA 373

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 71
          + FD   P   +QEQV+N     +V    EGYN  +FAYGQT SGKT TM G
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 93  WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG 144
           + FD   P   +QEQV+N     +V    EGYN  +FAYGQT SGKT TM G
Sbjct: 46  YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	279
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	2e-70
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	4e-36
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	6e-36
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	1e-69
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	1e-29
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	6e-29
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	3e-69
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	4e-27
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	1e-26
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	2e-68
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	2e-31
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	4e-30
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	4e-66
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	2e-26
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	3e-26
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	4e-66
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	2e-29
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	9e-29
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	6e-66
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	6e-37
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	3e-36
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	3e-64
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	8e-31
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	3e-30
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	5e-63
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	1e-37
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	4e-36
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	3e-62
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	2e-28
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	2e-28
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	2e-61
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	2e-26
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	2e-26
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	3e-61
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	2e-28
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	4e-28
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	3e-60
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	2e-24
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	2e-24
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	5e-59
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	2e-28
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	7e-28
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	9e-56
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	2e-27
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	7e-27
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	7e-55
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	2e-54
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	2e-27
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	2e-27
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	2e-54
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	7e-23
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	1e-22
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	1e-53
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	5e-27
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	6e-27
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	1e-53
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	1e-25
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	2e-25
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	2e-53
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	3e-53
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	3e-27
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	1e-26
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	3e-51
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	1e-25
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	2e-25
3u06_A	412	Protein claret segregational; motor domain, stalk	4e-51
3u06_A	412	Protein claret segregational; motor domain, stalk	3e-23
3u06_A	412	Protein claret segregational; motor domain, stalk	3e-23
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	5e-51
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	3e-25
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	3e-25
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	1e-49
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	2e-24
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	2e-24
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	3e-47
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	1e-23
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	1e-23
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	4e-46
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	6e-26
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	3e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  220 bits (564), Expect = 2e-70
 Identities = 67/104 (64%), Positives = 82/104 (78%), Gaps = 8/104 (7%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDSVLTWLLKDSLGG 215
           G RLKEGA+INKSL TLG VIS+LAE+ +        KK+ FIPYRDSVLTWLL+++LGG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321

Query: 216 NSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPN 259
           NS+T M+AA+SPAD+NY ETLSTLRYA+RAK I N  +VN   +
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHHHH 365

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  131 bits (331), Expect = 4e-36
 Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 4/88 (4%)

Query: 62  GSGKTFTMMGSKATTDNSPDAH---KDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVV 117
            S     M GS  T  N        K F+FD+SYWS   P    +ASQ+QV+ D+G +++
Sbjct: 23  DSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82

Query: 118 DAAFEGYNACVFAYGQTGSGKTFTMMGS 145
             AFEGYN C+FAYGQTG+GK++TMMG 
Sbjct: 83  QHAFEGYNVCIFAYGQTGAGKSYTMMGK 110

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  130 bits (330), Expect = 6e-36
 Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 4   DNSPDAHKDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
               +  K F+FD+SYWS   P    +ASQ+QV+ D+G +++  AFEGYN C+FAYGQTG
Sbjct: 41  KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 100

Query: 63  SGKTFTMMGSKATTD 77
           +GK++TMMG +    
Sbjct: 101 AGKSYTMMGKQEKDQ 115

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  218 bits (559), Expect = 1e-69
 Identities = 65/103 (63%), Positives = 77/103 (74%), Gaps = 3/103 (2%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G+RLKE   IN SL  LG+VIS+L +    KST IPYRDS LT LL+DSLGGN+KT+M+A
Sbjct: 272 GERLKEATKINLSLSALGNVISALVD---GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVA 328

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIREL 266
            + PA  N  ETL+TLRYANRAKNI NKP VNEDP   ++RE 
Sbjct: 329 NVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREF 371

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  114 bits (287), Expect = 1e-29
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 13/98 (13%)

Query: 49  EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
             Y+  V    + G     ++   K T    P   K FTFD  Y          A Q ++
Sbjct: 39  ASYDKVVDVDVKLG---QVSVKNPKGTAHEMP---KTFTFDAVYDWN-------AKQFEL 85

Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK 146
           +++    +VD+  +G+N  +FAYGQTG+GKT+TM G +
Sbjct: 86  YDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIR 123

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  112 bits (282), Expect = 6e-29
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 4   DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
             + +  K FTFD  Y          A Q +++++    +VD+  +G+N  +FAYGQTG+
Sbjct: 61  GTAHEMPKTFTFDAVYDWN-------AKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGT 113

Query: 64  GKTFTMMGSKATTDN 78
           GKT+TM G +   + 
Sbjct: 114 GKTYTMEGIRGDPEK 128

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  218 bits (557), Expect = 3e-69
 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G RLKE   IN SL  LG V+ +L +        +PYRDS LT LL+DSLGG++ +I+IA
Sbjct: 267 GLRLKESGAINTSLFVLGKVVDALNQ----GLPRVPYRDSKLTRLLQDSLGGSAHSILIA 322

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML 277
            I+P    Y +T+S L +A R+K +IN+P  NE      +  +     +L    
Sbjct: 323 NIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQKELLGPP 376

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  107 bits (269), Expect = 4e-27
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 60  QTGSGKTFTMMGSKATTDNSPDAH---KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDV 116
                     M S +    +   H     + FD  Y          ++Q+ ++      +
Sbjct: 38  GASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGER-------STQQDIYAGSVQPI 90

Query: 117 VDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           +    EG NA V AYG TG+GKT TM+GS
Sbjct: 91  LRHLLEGQNASVLAYGPTGAGKTHTMLGS 119

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  106 bits (267), Expect = 1e-26
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 5   NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
            +      + FD  Y          ++Q+ ++      ++    EG NA V AYG TG+G
Sbjct: 59  RNHQETLKYQFDAFYGER-------STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAG 111

Query: 65  KTFTMMGS 72
           KT TM+GS
Sbjct: 112 KTHTMLGS 119

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  214 bits (548), Expect = 2e-68
 Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 6/112 (5%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  L+E   INKSL  LG VI++L +    KS+ +PYRDS LT +L++SLGGNS+T +I 
Sbjct: 249 GQTLEEAKKINKSLSALGMVINALTD---GKSSHVPYRDSKLTRILQESLGGNSRTTLII 305

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
             SP+  N +ETLSTLR+  RAK+I NK  VN + +   +++    + K K 
Sbjct: 306 NCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQ---MLAKAKT 354

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  118 bits (299), Expect = 2e-31
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 60  QTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDA 119
           ++G     T  G    T +S +A   FTFD  +            Q  +F+      VD 
Sbjct: 23  ESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMS-------CKQSDIFDFSIKPTVDD 75

Query: 120 AFEGYNACVFAYGQTGSGKTFTMMGS 145
              GYN  VFAYGQTG+GK++TMMG+
Sbjct: 76  ILNGYNGTVFAYGQTGAGKSYTMMGT 101

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  114 bits (289), Expect = 4e-30
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 5   NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
           +S +A   FTFD  +            Q  +F+      VD    GYN  VFAYGQTG+G
Sbjct: 41  DSKEAQGSFTFDRVFDMS-------CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAG 93

Query: 65  KTFTMMGSKATTDNSP 80
           K++TMMG+     +  
Sbjct: 94  KSYTMMGTSIDDPDGR 109

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  209 bits (534), Expect = 4e-66
 Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 4/114 (3%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  L E  +INKSL  LG+VIS+LA+      T IPYRDS LT +L++SLGGN++T ++ 
Sbjct: 252 GTVLDEAKNINKSLSALGNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIVI 308

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEITKLKAM 276
             SPA  N SET STL +  RAK + N   VNE+       R    E  K   +
Sbjct: 309 CCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARL 362

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  105 bits (264), Expect = 2e-26
 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 70  MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF 129
             +    +    A K + FD  +          ASQE+V+N+    +V     GYN  +F
Sbjct: 37  FPNNVEENCISIAGKVYLFDKVFKPN-------ASQEKVYNEAAKSIVTDVLAGYNGTIF 89

Query: 130 AYGQTGSGKTFTMMGS 145
           AYGQT SGKT TM G 
Sbjct: 90  AYGQTSSGKTHTMEGV 105

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  105 bits (263), Expect = 3e-26
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           K + FD  +          ASQE+V+N+    +V     GYN  +FAYGQT SGKT TM 
Sbjct: 51  KVYLFDKVFKPN-------ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103

Query: 71  GSKATTDN 78
           G    +  
Sbjct: 104 GVIGDSVK 111

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  209 bits (533), Expect = 4e-66
 Identities = 64/100 (64%), Positives = 71/100 (71%), Gaps = 4/100 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G+ L EGA IN SL  LG VIS L E     +T IPYRDS LT LL+DSLGGNSKT+M A
Sbjct: 255 GETLVEGAKINLSLSALGLVISKLVE----GATHIPYRDSKLTRLLQDSLGGNSKTLMCA 310

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRII 263
            ISPA  NY ET+STLRYA+RAK I NKP +NEDP    I
Sbjct: 311 NISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  112 bits (283), Expect = 2e-29
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 49  EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
           E     +     +           + +   +    + FTFD  Y          +    +
Sbjct: 22  ENALNIIRMDEASAQ-VIVDPPEQEKSATQAKKVPRTFTFDAVYDQT-------SCNYGI 73

Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           F      ++DA  EG+N+ +FAYGQTG+GKT+TM G+
Sbjct: 74  FQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGN 110

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  111 bits (279), Expect = 9e-29
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 4   DNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGS 63
             +    + FTFD  Y          +    +F      ++DA  EG+N+ +FAYGQTG+
Sbjct: 49  TQAKKVPRTFTFDAVYDQT-------SCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGA 101

Query: 64  GKTFTMMGS 72
           GKT+TM G+
Sbjct: 102 GKTWTMGGN 110

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  211 bits (538), Expect = 6e-66
 Identities = 62/129 (48%), Positives = 78/129 (60%), Gaps = 21/129 (16%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST------------------KKSTFIPYRDSVL 205
           G RL+EG++INKSL TLG VI++LA+  +                    ++ +PYRDSVL
Sbjct: 313 GQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVL 372

Query: 206 TWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRE 265
           TWLLKDSLGGNSKT MIA ISP D  Y ETLSTLRYA++AK I  +  VN+        E
Sbjct: 373 TWLLKDSLGGNSKTAMIACISPTD--YDETLSTLRYADQAKRIRTRAVVNQVDGVSAA-E 429

Query: 266 LHDEITKLK 274
              +I  + 
Sbjct: 430 RDAQIPSIV 438

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  135 bits (341), Expect = 6e-37
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 49  EGYNACVFAYGQTGS-----GKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFA 103
                 V     T        +      ++          K FTFD S+WS +     +A
Sbjct: 56  RNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYA 115

Query: 104 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           +QE V++ LG + +D  FEGY+ C+FAYGQTGSGK++TMMG+
Sbjct: 116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT 157

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  133 bits (336), Expect = 3e-36
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           K FTFD S+WS +     +A+QE V++ LG + +D  FEGY+ C+FAYGQTGSGK++TMM
Sbjct: 96  KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155

Query: 71  GS 72
           G+
Sbjct: 156 GT 157

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  204 bits (521), Expect = 3e-64
 Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 163 AGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMI 222
           AG RLKEG +IN+SL  LG VI  L++   +   FI YRDS LT +L++SLGGN+KT +I
Sbjct: 247 AGVRLKEGCNINRSLFILGQVIKKLSD--GQVGGFINYRDSKLTRILQNSLGGNAKTRII 304

Query: 223 AAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH 267
             I+P   ++ ETL+ L++A+ AK + N P VNE     +    H
Sbjct: 305 CTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHH 347

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  116 bits (294), Expect = 8e-31
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)

Query: 70  MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVF 129
             +        D  K F FD  +   +       + + V+ ++   ++D+A +GYN  +F
Sbjct: 30  WKTDNNVIYQVDGSKSFNFDRVFHGNE-------TTKNVYEEIAAPIIDSAIQGYNGTIF 82

Query: 130 AYGQTGSGKTFTMMGS 145
           AYGQT SGKT+TMMGS
Sbjct: 83  AYGQTASGKTYTMMGS 98

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  114 bits (289), Expect = 3e-30
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 2  TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
                D  K F FD  +   +       + + V+ ++   ++D+A +GYN  +FAYGQT
Sbjct: 35 NVIYQVDGSKSFNFDRVFHGNE-------TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQT 87

Query: 62 GSGKTFTMMGS 72
           SGKT+TMMGS
Sbjct: 88 ASGKTYTMMGS 98

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  200 bits (512), Expect = 5e-63
 Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
           GDRLKEG++INKSL TLG VIS+LA+ S    K+ F+PYRDSVLTWLLKDSLGGNSKT M
Sbjct: 264 GDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAM 323

Query: 222 IAAISPADVNYSETLSTLRYANRAKNIIN 250
           +A +SPA  NY ETLSTLRYA+RAK+  +
Sbjct: 324 VATVSPAADNYDETLSTLRYADRAKHHHH 352

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  135 bits (341), Expect = 1e-37
 Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 4/98 (4%)

Query: 49  EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSS-PQFASQEQ 107
                 V              + +  +  ++    K F +DH +WS D S   ++A Q+ 
Sbjct: 19  LHTKCVVDVDANKV---ILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDI 75

Query: 108 VFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           VF  LG +++  AF+GYNAC+FAYGQTGSGK++TMMG+
Sbjct: 76  VFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGT 113

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  131 bits (331), Expect = 4e-36
 Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 1   ATTDNSPDAHKDFTFDHSYWSFDPSS-PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYG 59
            +  ++    K F +DH +WS D S   ++A Q+ VF  LG +++  AF+GYNAC+FAYG
Sbjct: 41  LSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYG 100

Query: 60  QTGSGKTFTMMGS 72
           QTGSGK++TMMG+
Sbjct: 101 QTGSGKSYTMMGT 113

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  199 bits (508), Expect = 3e-62
 Identities = 51/93 (54%), Positives = 70/93 (75%), Gaps = 4/93 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
             R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+DSLGG ++T +IA
Sbjct: 270 DKRAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIA 325

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNE 256
            ISPA +N  ETLSTL YA+RAKNI+NKP VN+
Sbjct: 326 TISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  110 bits (278), Expect = 2e-28
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 2   TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
                  + K +TFD  + +          Q  V+  +   ++D    GYN  +FAYGQT
Sbjct: 46  GGLADKSSRKTYTFDMVFGAS-------TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQT 98

Query: 62  GSGKTFTMMGSKATTDNSPDAHKD 85
           G+GKTFTM G ++  +        
Sbjct: 99  GTGKTFTMEGERSPNEEYTWEEDP 122

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  110 bits (278), Expect = 2e-28
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 49  EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
              ++ V            T   +  ++       K +TFD  + +          Q  V
Sbjct: 26  ASAHSIVECDPVRKEVSVRTGGLADKSSR------KTYTFDMVFGAS-------TKQIDV 72

Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           +  +   ++D    GYN  +FAYGQTG+GKTFTM G 
Sbjct: 73  YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 109

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  197 bits (503), Expect = 2e-61
 Identities = 51/98 (52%), Positives = 70/98 (71%), Gaps = 4/98 (4%)

Query: 162 EAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
           E G R++E  +IN+SL+TLG VI++L +    ++  +PYR+S LT LL++SLGG +KT +
Sbjct: 279 EKGIRVRETVNINQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSI 334

Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPN 259
           IA ISP   +  ETLSTL YA+RAKNI NKP VN+   
Sbjct: 335 IATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  105 bits (264), Expect = 2e-26
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           K FTFD S+          + Q  V++ +   +++    GYN  VFAYGQTG+GKT TM+
Sbjct: 67  KKFTFDRSFGPE-------SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119

Query: 71  GSKATTDNSPDAHKD 85
           G++     S      
Sbjct: 120 GNETAELKSSWEDDS 134

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  105 bits (264), Expect = 2e-26
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 84  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
           K FTFD S+          + Q  V++ +   +++    GYN  VFAYGQTG+GKT TM+
Sbjct: 67  KKFTFDRSFGPE-------SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119

Query: 144 GSKARNFGEGKD 155
           G++        +
Sbjct: 120 GNETAELKSSWE 131

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  196 bits (500), Expect = 3e-61
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G   +EG +IN  L+++  V+ S+A       T IPYRDSVLT +L+ SL   S    +A
Sbjct: 255 GVARQEGVNINLGLLSINKVVMSMAA----GHTVIPYRDSVLTTVLQASLTAQSYLTFLA 310

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVN 255
            ISP   + SETLSTLR+   AK    +   +
Sbjct: 311 CISPHQCDLSETLSTLRFGTSAKAAALEHHHH 342

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  110 bits (276), Expect = 2e-28
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
            +F FDH++ +         SQ++++  L + +VD   EG+     AYGQTG+GK+++M 
Sbjct: 61  NEFHFDHAFPAT-------ISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMG 113

Query: 71  GSKATTDNSPDA 82
            +          
Sbjct: 114 MTPPGEILPEHL 125

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  109 bits (275), Expect = 4e-28
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 84  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
            +F FDH++ +         SQ++++  L + +VD   EG+     AYGQTG+GK+++M 
Sbjct: 61  NEFHFDHAFPAT-------ISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMG 113

Query: 144 GS 145
            +
Sbjct: 114 MT 115

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =  194 bits (495), Expect = 3e-60
 Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 6/114 (5%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G++LKE   INKSL  LG VIS+L+      +  IPYR+  LT L+ DSLGGN+KT+M  
Sbjct: 247 GNQLKEAQSINKSLSALGDVISALSS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFV 302

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKAML 277
            ISPA+ N  ET ++L YA+R ++I+N P+ N     + +  L   ++  K   
Sbjct: 303 NISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQA 354

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =   99 bits (250), Expect = 2e-24
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 5   NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
              D  K   +D     FD ++    +Q+ VF D    +V +A +GYN C+FAYGQTGSG
Sbjct: 41  WKDDKAKQHMYDRV---FDGNA----TQDDVFEDTK-YLVQSAVDGYNVCIFAYGQTGSG 92

Query: 65  KTFTMMGSK 73
           KTFT+ G+ 
Sbjct: 93  KTFTIYGAD 101

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =   99 bits (250), Expect = 2e-24
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 78  NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
              D  K   +D     FD ++    +Q+ VF D    +V +A +GYN C+FAYGQTGSG
Sbjct: 41  WKDDKAKQHMYDRV---FDGNA----TQDDVFEDTK-YLVQSAVDGYNVCIFAYGQTGSG 92

Query: 138 KTFTMMGSK 146
           KTFT+ G+ 
Sbjct: 93  KTFTIYGAD 101

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  190 bits (486), Expect = 5e-59
 Identities = 52/85 (61%), Positives = 69/85 (81%), Gaps = 1/85 (1%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G R  EG +IN+SL+ LG+VI++LA+ S +K+  IPYR+S LT LLKDSLGGN +TIMIA
Sbjct: 272 GTRFVEGTNINRSLLALGNVINALAD-SKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIA 330

Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
           A+SP+ V Y +T +TL+YANRAK+I
Sbjct: 331 AVSPSSVFYDDTYNTLKYANRAKDI 355

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  110 bits (278), Expect = 2e-28
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 49  EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
              +  VF   Q           +        +    F FD  +          ++Q +V
Sbjct: 37  VDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDET-------STQSEV 89

Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           F      ++ +   GYN  V AYG TG+GKT TM+GS
Sbjct: 90  FEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  108 bits (273), Expect = 7e-28
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
             F FD  +          ++Q +VF      ++ +   GYN  V AYG TG+GKT TM+
Sbjct: 72  LKFVFDAVFDET-------STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124

Query: 71  GS 72
           GS
Sbjct: 125 GS 126

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  181 bits (463), Expect = 9e-56
 Identities = 46/83 (55%), Positives = 65/83 (78%), Gaps = 1/83 (1%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G+RLKE   IN SL+ LG+VIS+L +   ++ + IPYRDS +T +LKDSLGGN+KT+MIA
Sbjct: 263 GERLKESIQINSSLLALGNVISALGD-PQRRGSHIPYRDSKITRILKDSLGGNAKTVMIA 321

Query: 224 AISPADVNYSETLSTLRYANRAK 246
            +SP+  ++ ETL+TL YA+RA+
Sbjct: 322 CVSPSSSDFDETLNTLNYASRAQ 344

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  107 bits (269), Expect = 2e-27
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           + F F          +     QE V+      +++A FEG+NA VFAYGQTGSGKT+TM 
Sbjct: 50  RHFGFHVV---LAEDA----GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102

Query: 71  GSKATTDNSPDA 82
            +   +    + 
Sbjct: 103 EASVASLLEDEQ 114

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  106 bits (266), Expect = 7e-27
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 84  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
           + F F          +     QE V+      +++A FEG+NA VFAYGQTGSGKT+TM 
Sbjct: 50  RHFGFHVV---LAEDA----GQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102

Query: 144 GSKARNFGE 152
            +   +  E
Sbjct: 103 EASVASLLE 111

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117

 Score =  172 bits (438), Expect = 7e-55
 Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 4/106 (3%)

Query: 174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYS 233
           NKSL  LG+VIS+LAE      T +PYRDS +T +L+DSLGGN +T ++   SP+  N +
Sbjct: 1   NKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57

Query: 234 ETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEITKLKAMLT 278
           ET STL +  RAK I N  +VN +       ++   E  K KA+ +
Sbjct: 58  ETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKS 103

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  178 bits (453), Expect = 2e-54
 Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 4/85 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G  L E  +INKSL  LG+VIS+LAE     ST++PYRDS +T +L+DSLGGN +T ++ 
Sbjct: 245 GAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300

Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
             SP+  N SET STL +  RAK I
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTI 325

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  106 bits (268), Expect = 2e-27
 Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 11 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
          K + FD  + S         SQEQV+ND    +V    EGYN  +FAYGQT SGKT TM 
Sbjct: 44 KPYAFDRVFQSS-------TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96

Query: 71 GS 72
          G 
Sbjct: 97 GK 98

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  106 bits (268), Expect = 2e-27
 Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 84  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 143
           K + FD  + S         SQEQV+ND    +V    EGYN  +FAYGQT SGKT TM 
Sbjct: 44  KPYAFDRVFQSS-------TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96

Query: 144 GS 145
           G 
Sbjct: 97  GK 98

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score =  179 bits (456), Expect = 2e-54
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 163 AGDRLK-EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
              + + +GA+IN+SL+ L   I ++          IP+RDS LT +L+D   G SK+IM
Sbjct: 249 QNKQTQTDGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFVGKSKSIM 304

Query: 222 IAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDEITKLKA 275
           IA ISP      +TL+TLRY++R KN  N     +     ++            
Sbjct: 305 IANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRTGHHHH 358

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score = 95.4 bits (238), Expect = 7e-23
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 83  HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFT 141
             +F  D     FD +         V+ +    ++   +E G     FAYGQTGSGKT+T
Sbjct: 49  RHEFIVDKV---FDDTV----DNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101

Query: 142 MMGSKARNFGEGK 154
           M+GS+     +  
Sbjct: 102 MLGSQPYGQSDTP 114

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score = 94.6 bits (236), Expect = 1e-22
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 10  HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFT 68
             +F  D     FD +         V+ +    ++   +E G     FAYGQTGSGKT+T
Sbjct: 49  RHEFIVDKV---FDDTV----DNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101

Query: 69  MMGSKATTDNS 79
           M+GS+    + 
Sbjct: 102 MLGSQPYGQSD 112

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  178 bits (453), Expect = 1e-53
 Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 6/95 (6%)

Query: 163 AGDRLK-EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTI 220
           A  + + EGA INKSL+ L   I +L +         P+R+S LT +L+DS +G NS+T 
Sbjct: 319 ADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTC 374

Query: 221 MIAAISPADVNYSETLSTLRYANRAKNIINKPTVN 255
           MIA ISP   +   TL+TLRYA+R K + +    +
Sbjct: 375 MIAMISPGISSCEYTLNTLRYADRVKELSHHHHHH 409

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  103 bits (260), Expect = 1e-25
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 10  HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
           ++ F FD +   FD ++    S E V+      +V   FEG  A  FAYGQTGSGKT TM
Sbjct: 120 NQAFCFDFA---FDETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172

Query: 70  MGSKATTDNSPD 81
            G  +    +  
Sbjct: 173 GGDLSGKSQNAS 184

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  103 bits (258), Expect = 2e-25
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 83  HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
           ++ F FD +   FD ++    S E V+      +V   FEG  A  FAYGQTGSGKT TM
Sbjct: 120 NQAFCFDFA---FDETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172

Query: 143 MGS 145
            G 
Sbjct: 173 GGD 175

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100

 Score =  167 bits (426), Expect = 2e-53
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 4/100 (4%)

Query: 172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVN 231
           +INKSL  LG+VIS+LAE      T +PYRDS +T +L+DSL GN +T ++   SP+  N
Sbjct: 3   NINKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFN 59

Query: 232 YSETLSTLRYANRAKNIINKPTVNEDPNTR-IIRELHDEI 270
            +ET STL +  RAK I N  +VN +       ++   E 
Sbjct: 60  EAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEK 99

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  175 bits (447), Expect = 3e-53
 Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G+RL+E  +INKSL  LG VI +L         +IP+R+S LT+LL+ SL G+SKT+M  
Sbjct: 261 GERLRETQNINKSLSCLGDVIYALNTPD-AGKRYIPFRNSKLTYLLQYSLVGDSKTLMFV 319

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKP 252
            I P   + SETL++LR+A++  +     
Sbjct: 320 NIPPDPNHISETLNSLRFASKVNSTKIAK 348

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  107 bits (269), Expect = 3e-27
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 13/97 (13%)

Query: 49  EGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQV 108
           +  +  +  + +    ++ T+       +       +F FD     F+PS     + +++
Sbjct: 23  DMSHILIEKFNEAKGAQSLTI-----NRNEGRILSYNFQFDMI---FEPSH----TNKEI 70

Query: 109 FNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
           F ++   +V ++ +GYN C+FAYGQTGSGKT+TM+ +
Sbjct: 71  FEEIR-QLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA 106

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  105 bits (265), Expect = 1e-26
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 8/71 (11%)

Query: 2   TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
             +       +F FD     F+PS     + +++F ++   +V ++ +GYN C+FAYGQT
Sbjct: 44  NRNEGRILSYNFQFDMI---FEPSH----TNKEIFEEIR-QLVQSSLDGYNVCIFAYGQT 95

Query: 62  GSGKTFTMMGS 72
           GSGKT+TM+ +
Sbjct: 96  GSGKTYTMLNA 106

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  171 bits (436), Expect = 3e-51
 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 6/92 (6%)

Query: 163 AGDRLK-EGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTI 220
           A  + + EGA INKSL+ L   I +L +         P+R+S LT +L+DS +G NS+T 
Sbjct: 299 ADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTC 354

Query: 221 MIAAISPADVNYSETLSTLRYANRAKNIINKP 252
           MIA ISP   +   TL+TLRYA+R K +    
Sbjct: 355 MIATISPGISSCEYTLNTLRYADRVKELSPHS 386

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  103 bits (259), Expect = 1e-25
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 10  HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
           ++ F FD +   FD ++    S E V+      +V   FEG  A  FAYGQTGSGKT TM
Sbjct: 100 NQAFCFDFA---FDETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152

Query: 70  MGSKATTDNSPDA 82
            G  +    +   
Sbjct: 153 GGDLSGKAQNASK 165

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  102 bits (257), Expect = 2e-25
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 83  HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 142
           ++ F FD +   FD ++    S E V+      +V   FEG  A  FAYGQTGSGKT TM
Sbjct: 100 NQAFCFDFA---FDETA----SNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152

Query: 143 MGS 145
            G 
Sbjct: 153 GGD 155

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score =  172 bits (437), Expect = 4e-51
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 5/103 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
             R+ E  +IN+SL  L +VI +L +    K   IPYR+S LT LL  SLGGNSKT+M  
Sbjct: 302 STRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFI 357

Query: 224 AISPADVNYSETLSTLRYANRAKNI-INKPTVNEDPNTRIIRE 265
            +SP    + E++ +LR+A    +  + K   N   N  +   
Sbjct: 358 NVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANS 400

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score = 97.3 bits (243), Expect = 3e-23
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 72  SKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAY 131
           S      S    + F+FD     F P S    SQ  +F  +   ++ +A +GYN C+FAY
Sbjct: 94  SIDAQAKSKMGQQIFSFDQV---FHPLS----SQSDIFEMVSP-LIQSALDGYNICIFAY 145

Query: 132 GQTGSGKTFTMMGS 145
           GQTGSGKT+TM G 
Sbjct: 146 GQTGSGKTYTMDGV 159

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 8/71 (11%)

Query: 2   TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
               S    + F+FD     F P S    SQ  +F  +   ++ +A +GYN C+FAYGQT
Sbjct: 97  AQAKSKMGQQIFSFDQV---FHPLS----SQSDIFEMVSP-LIQSALDGYNICIFAYGQT 148

Query: 62  GSGKTFTMMGS 72
           GSGKT+TM G 
Sbjct: 149 GSGKTYTMDGV 159

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  170 bits (432), Expect = 5e-51
 Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           GDRL+E  +INKSL  LG VI +L +  +     IP+R+S LT+LL+ SL G+SKT+M  
Sbjct: 258 GDRLRETQNINKSLSCLGDVIHALGQPDST-KRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKP 252
            ISP+  + +ETL++LR+A++  +     
Sbjct: 317 NISPSSSHINETLNSLRFASKVNSTRLVS 345

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  101 bits (255), Expect = 3e-25
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 2   TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
           T   +     +F FD     FD       +   VF ++G  +V ++ +GYN C+FAYGQT
Sbjct: 43  TKIQNTAQVHEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQT 94

Query: 62  GSGKTFTMMGSK 73
           GSGKTFTM+   
Sbjct: 95  GSGKTFTMLNPG 106

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  101 bits (255), Expect = 3e-25
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 75  TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 134
           T   +     +F FD     FD       +   VF ++G  +V ++ +GYN C+FAYGQT
Sbjct: 43  TKIQNTAQVHEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQT 94

Query: 135 GSGKTFTMMGSK 146
           GSGKTFTM+   
Sbjct: 95  GSGKTFTMLNPG 106

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  167 bits (425), Expect = 1e-49
 Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           GDRL+E  +INKSL  LG VI +L +  +     IP+R+S LT+LL+ SL G+SKT+M  
Sbjct: 314 GDRLRETQNINKSLSALGDVIHALGQPDST-KRHIPFRNSKLTYLLQYSLTGDSKTLMFV 372

Query: 224 AISPADVNYSETLSTLRYANRAKNIINKP 252
            ISP+  + +ETL++LR+A++  +     
Sbjct: 373 NISPSSSHINETLNSLRFASKVNSTRLVS 401

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  100 bits (250), Expect = 2e-24
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 2   TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
           T   +     +F FD     FD       +   VF ++G  +V ++ +GYN  +FAYGQT
Sbjct: 99  TKIQNTAQVHEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVAIFAYGQT 150

Query: 62  GSGKTFTMMGS 72
           GSGKTFTM+  
Sbjct: 151 GSGKTFTMLNP 161

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  100 bits (250), Expect = 2e-24
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)

Query: 75  TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 134
           T   +     +F FD     FD       +   VF ++G  +V ++ +GYN  +FAYGQT
Sbjct: 99  TKIQNTAQVHEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVAIFAYGQT 150

Query: 135 GSGKTFTMMGS 145
           GSGKTFTM+  
Sbjct: 151 GSGKTFTMLNP 161

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score =  159 bits (405), Expect = 3e-47
 Identities = 40/85 (47%), Positives = 60/85 (70%), Gaps = 4/85 (4%)

Query: 164 GDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIA 223
           G RL+E  HINKSL  LG VI++L      +   +P+R+S LT+LL+DSL G+SKT+M+ 
Sbjct: 248 GSRLREAQHINKSLSALGDVIAALRS----RQGHVPFRNSKLTYLLQDSLSGDSKTLMVV 303

Query: 224 AISPADVNYSETLSTLRYANRAKNI 248
            +SP + N SETL +L++A R +++
Sbjct: 304 QVSPVEKNTSETLYSLKFAERVRSV 328

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score = 96.8 bits (242), Expect = 1e-23
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 5   NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
                   F  D     F P +    SQ+ VF ++   +V +  +G+N C+FAYGQTG+G
Sbjct: 42  LHKGKPVSFELDKV---FSPQA----SQQDVFQEVQ-ALVTSCIDGFNVCIFAYGQTGAG 93

Query: 65  KTFTMMGS 72
           KT+TM G+
Sbjct: 94  KTYTMEGT 101

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score = 96.8 bits (242), Expect = 1e-23
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 78  NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
                   F  D     F P +    SQ+ VF ++   +V +  +G+N C+FAYGQTG+G
Sbjct: 42  LHKGKPVSFELDKV---FSPQA----SQQDVFQEVQ-ALVTSCIDGFNVCIFAYGQTGAG 93

Query: 138 KTFTMMGS 145
           KT+TM G+
Sbjct: 94  KTYTMEGT 101

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score =  157 bits (400), Expect = 4e-46
 Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 4/85 (4%)

Query: 162 EAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIM 221
              +RL+E   IN SL TLG VI +L+     K + +PYR+S LT+LL++SLGG++K +M
Sbjct: 294 GERERLRETQAINSSLSTLGLVIMALSN----KESHVPYRNSKLTYLLQNSLGGSAKMLM 349

Query: 222 IAAISPADVNYSETLSTLRYANRAK 246
              ISP + N SE+L++LR+A++  
Sbjct: 350 FVNISPLEENVSESLNSLRFASKVN 374

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score =  103 bits (260), Expect = 6e-26
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 2   TTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQT 61
           +   +P    DF+FD     F P S     Q++VF ++   +V +A +GY  C+FAYGQT
Sbjct: 74  SGAPAPPPRHDFSFDRV---FPPGS----GQDEVFEEIA-MLVQSALDGYPVCIFAYGQT 125

Query: 62  GSGKTFTMMGSKATTDNSP 80
           GSGKTFTM G         
Sbjct: 126 GSGKTFTMEGGPGGDPQLE 144

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score =  101 bits (255), Expect = 3e-25
 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 72  SKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAY 131
              +   +P    DF+FD     F P S     Q++VF ++   +V +A +GY  C+FAY
Sbjct: 71  GTLSGAPAPPPRHDFSFDRV---FPPGS----GQDEVFEEIA-MLVQSALDGYPVCIFAY 122

Query: 132 GQTGSGKTFTMMGSKARN 149
           GQTGSGKTFTM G    +
Sbjct: 123 GQTGSGKTFTMEGGPGGD 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 49/380 (12%), Positives = 86/380 (22%), Gaps = 146/380 (38%)

Query: 11  KDFTFDHSYWSFDPSSP-----QFASQ-EQVFNDLGMDVVDAAFEGYNAC---------- 54
            ++ F  S    +   P      +  Q ++++ND      +  F  YN            
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND------NQVFAKYNVSRLQPYLKLRQ 142

Query: 55  ----------VFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYW----------- 93
                     V   G  GSGK  T +              DF     +W           
Sbjct: 143 ALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYKVQCKMDF---KIFWLNLKNCNSPET 197

Query: 94  ----------SFDPSSPQFASQ----EQVFNDLGM-------------------DVVDA- 119
                       DP+    +      +   + +                     +V +A 
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 120 ---AFEGYNACVFAYGQTGSGKTF--TMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHIN 174
              AF    +C          K    T                 S+      L       
Sbjct: 258 AWNAFNL--SC----------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD---- 301

Query: 175 KSLVTLGSVIS-SLAELSTKKSTFIP---------YRDSVLTW-----LLKDSLGGNSKT 219
           +    L   +     +L  +  T  P          RD + TW     +  D L   +  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTI 358

Query: 220 IMIA----------------AISPADVNYSE-TLSTLRYANR-------AKNIINKPTVN 255
           I  +                ++ P   +     LS + +             +     V 
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 256 EDPNTRIIRELHDEITKLKA 275
           + P    I  +     +LK 
Sbjct: 419 KQPKESTIS-IPSIYLELKV 437

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	100.0
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	100.0
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	100.0
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	100.0
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	100.0
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	100.0
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	100.0
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	100.0
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	100.0
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	100.0
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	100.0
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	100.0
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	100.0
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	100.0
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	100.0
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	100.0
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	100.0
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	100.0
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	100.0
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	100.0
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	100.0
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	100.0
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	100.0
3u06_A	412	Protein claret segregational; motor domain, stalk	100.0
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	100.0
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	100.0
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	99.97
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	99.96
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	99.52
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.38
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.36
2qgz_A	308	Helicase loader, putative primosome component; str	95.2
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	93.61
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	92.81
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	92.56
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	92.26
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	91.7
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	91.66
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	91.49
3bos_A	242	Putative DNA replication factor; P-loop containing	91.31
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	91.31
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	91.17
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	91.12
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	90.59
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	90.49
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	90.47
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	90.37
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	89.9
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	89.88
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	89.82
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	89.66
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	89.42
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	89.3
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	88.94
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	88.82
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	88.8
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	88.79
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	88.78
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	88.62
2chg_A	226	Replication factor C small subunit; DNA-binding pr	88.42
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	88.37
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	88.3
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	88.29
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	88.29
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	88.27
1p9r_A	418	General secretion pathway protein E; bacterial typ	88.25
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	88.23
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	88.19
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	88.1
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	88.05
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	88.04
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	87.99
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	87.92
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	87.88
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	87.76
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	87.29
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	87.18
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	87.04
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	86.94
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	86.67
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	86.35
3bor_A	237	Human initiation factor 4A-II; translation initiat	86.32
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	86.2
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	86.16
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	85.93
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	85.81
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	85.2
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	84.64
1tue_A	212	Replication protein E1; helicase, replication, E1E	84.59
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	84.58
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	84.5
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	84.49
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	84.48
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	84.37
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	84.33
2eyu_A	261	Twitching motility protein PILT; pilus retraction	84.28
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	83.99
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	83.78
3co5_A	143	Putative two-component system transcriptional RES	83.54
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	83.5
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	83.42
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	83.39
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	83.32
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	83.01
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	82.8
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	82.71
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	82.63
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	82.55
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	82.52
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	82.49
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	82.32
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	82.2
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	81.86
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	81.84
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	81.73
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	81.45
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	81.26
3b6e_A	216	Interferon-induced helicase C domain-containing P;	81.22
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	81.21
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	80.98
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	80.77
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	80.76
3u06_A	412	Protein claret segregational; motor domain, stalk	80.72
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	80.59
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	80.46
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	80.37
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	80.35
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	80.29

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=100.00  E-value=5.2e-62  Score=429.99  Aligned_cols=238  Identities=35%  Similarity=0.527  Sum_probs=197.2

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+. +.|+|+.+++|+|+||||||||||||||||+|+..++|++|+++.+| |..+......
T Consensus        47 ~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~l-F~~i~~~~~~  124 (369)
T 3cob_A           47 KQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSEL-FRIMKKDSNK  124 (369)
T ss_dssp             EEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHHTTTT
T ss_pred             eEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHH-HHHHHhhccC
Confidence            458899999999999999999 57999999999999999999999999999999999999999999999 9877532211


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--e----------EEEecccc------------------
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--T----------FTMMGSKA------------------  147 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--~----------~~~~g~~~------------------  147 (279)
                                    ..+.+..+++|+|++.++|||.+....  .          ..+.|...                  
T Consensus       125 --------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~  190 (369)
T 3cob_A          125 --------------FSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSE  190 (369)
T ss_dssp             --------------EEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHH
T ss_pred             --------------ceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhh
Confidence                          125566699999999999999754221  1          11111111                  


Q ss_pred             -c---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37           148 -R---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL  187 (279)
Q Consensus       148 -~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l  187 (279)
                       |                                       ...+|+|++......|.+++|+..||+||++|++||.+|
T Consensus       191 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL  270 (369)
T 3cob_A          191 QRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISAL  270 (369)
T ss_dssp             HTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHH
Confidence             1                                       111456665555577899999999999999999999999


Q ss_pred             HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHHHHH
Q psy37           188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH  267 (279)
Q Consensus       188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~~l~  267 (279)
                      ++    +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|.|.+|.++  ..+.+|+
T Consensus       271 ~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--~ei~~L~  344 (369)
T 3cob_A          271 SS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLK  344 (369)
T ss_dssp             HT----TCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--HHHHHHH
T ss_pred             hc----CCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--HHHHHHH
Confidence            95    67899999999999999999999999999999999999999999999999999999999999877  6667788


Q ss_pred             HHHHHHHHHh
Q psy37           268 DEITKLKAML  277 (279)
Q Consensus       268 ~~~~~Lk~~l  277 (279)
                      +++..||.++
T Consensus       345 ~~l~~~~~~~  354 (369)
T 3cob_A          345 KLVSYWKEQA  354 (369)
T ss_dssp             HHTTCC----
T ss_pred             HHHHHHHHhc
Confidence            8877777654

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=100.00  E-value=1.6e-61  Score=426.77  Aligned_cols=246  Identities=36%  Similarity=0.458  Sum_probs=182.3

Q ss_pred             eeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCcccccee
Q psy37            12 DFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTF   88 (279)
Q Consensus        12 ~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f   88 (279)
                      ....+...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..   .+|++|+++++| |
T Consensus        45 ~i~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~l-F  123 (365)
T 2y65_A           45 CISIAGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDI-F  123 (365)
T ss_dssp             EEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHH-H
T ss_pred             EEEECCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHH-H
Confidence            444556679999999999999999999999999999999999999999999999999999743   469999999999 9


Q ss_pred             cccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEeccccc-----------
Q psy37            89 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMGSKAR-----------  148 (279)
Q Consensus        89 ~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g~~~~-----------  148 (279)
                      ..+.....              ...+.+..+++|+|++.++|||.+.....         ..+.|....           
T Consensus       124 ~~i~~~~~--------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~l  189 (365)
T 2y65_A          124 NHIYAMEV--------------NLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEV  189 (365)
T ss_dssp             HHHHHCCS--------------CEEEEEEEEEEEEETTEEEETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHH
T ss_pred             HHHHhccC--------------CceEEEEEEEEEEECCeeeecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHH
Confidence            87653211              11255666999999999999997443211         111111111           


Q ss_pred             -----------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHH
Q psy37           149 -----------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLG  181 (279)
Q Consensus       149 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~  181 (279)
                                                                     ...+|+|++......|.+++|+..||+||++|+
T Consensus       190 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg  269 (365)
T 2y65_A          190 IEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALG  269 (365)
T ss_dssp             HHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC----------------CCHHHHHHH
T ss_pred             HHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHH
Confidence                                                           112566666666678899999999999999999


Q ss_pred             HHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHH
Q psy37           182 SVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR  261 (279)
Q Consensus       182 ~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~  261 (279)
                      +||.+|++   ....|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++|+|.|++|.++...
T Consensus       270 ~vI~aL~~---~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~  346 (365)
T 2y65_A          270 NVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAE  346 (365)
T ss_dssp             HHHHHHHH---CCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSH
T ss_pred             HHHHHHhc---CCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHH
Confidence            99999986   446799999999999999999999999999999999999999999999999999999999999877764


Q ss_pred             -HHHHHHHHHHHHHH
Q psy37           262 -IIRELHDEITKLKA  275 (279)
Q Consensus       262 -~~~~l~~~~~~Lk~  275 (279)
                       +.++|++|+++|+.
T Consensus       347 ~~~~~~~~e~~~~~~  361 (365)
T 2y65_A          347 EWKRRYEKEKEKNAR  361 (365)
T ss_dssp             HHHHC----------
T ss_pred             HHHHHHHHHHHHHHH
Confidence             55667777776654

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=100.00  E-value=8e-62  Score=428.77  Aligned_cols=230  Identities=41%  Similarity=0.587  Sum_probs=176.0

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceeccccccc
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYWSF   95 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~~~   95 (279)
                      .|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|...   .+|++|+++++| |..+....
T Consensus        69 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~l-F~~i~~~~  147 (372)
T 3b6u_A           69 TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHI-FTHISRSQ  147 (372)
T ss_dssp             EEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHH-HHHHHTCS
T ss_pred             EEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHH-HHHhhhcc
Confidence            47888999999999999999999999999999999999999999999999999654   479999999999 98775421


Q ss_pred             CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE----------EEecccc------------------
Q psy37            96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF----------TMMGSKA------------------  147 (279)
Q Consensus        96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~----------~~~g~~~------------------  147 (279)
                      .               ..+.+..+++|+|+|.++|||.+......          .+.|...                  
T Consensus       148 ~---------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~  212 (372)
T 3b6u_A          148 N---------------QQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQ  212 (372)
T ss_dssp             S---------------CEEEEEEEEEEEETTEEEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHH
T ss_pred             C---------------CceEEEEEEEEEeCCEEEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHH
Confidence            1               12456669999999999999975432211          1111111                  


Q ss_pred             -------------------------------------------ccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHH
Q psy37           148 -------------------------------------------RNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVI  184 (279)
Q Consensus       148 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i  184 (279)
                                                                 -...+|+|++......|.+++|+..||+||++|++||
T Consensus       213 ~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI  292 (372)
T 3b6u_A          213 NRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVI  292 (372)
T ss_dssp             HHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHH
T ss_pred             hcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHH
Confidence                                                       0112566666666677899999999999999999999


Q ss_pred             HHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHH
Q psy37           185 SSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIR  264 (279)
Q Consensus       185 ~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~  264 (279)
                      .+|++   .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++|+|.|++|+++.+.+++
T Consensus       293 ~aL~~---~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~  369 (372)
T 3b6u_A          293 SALVD---GKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLR  369 (372)
T ss_dssp             HHHHC---C---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC--------
T ss_pred             HHHhc---CCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHHHHHH
Confidence            99985   345799999999999999999999999999999999999999999999999999999999999998888777


Q ss_pred             HHH
Q psy37           265 ELH  267 (279)
Q Consensus       265 ~l~  267 (279)
                      +|+
T Consensus       370 ~~~  372 (372)
T 3b6u_A          370 EFQ  372 (372)
T ss_dssp             ---
T ss_pred             hcC
Confidence            653

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-62  Score=431.39  Aligned_cols=240  Identities=33%  Similarity=0.448  Sum_probs=169.5

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++.+| |..+......
T Consensus        65 ~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~l-F~~i~~~~~~  143 (388)
T 3bfn_A           65 LKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDL-LQLTREEGAE  143 (388)
T ss_dssp             EEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHHHTST
T ss_pred             eEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHH-HHHHHHhhcc
Confidence            358999999999999999999999999999999999999999999999999999999999999999999 9877532211


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEec-------------------cccc-
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMG-------------------SKAR-  148 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g-------------------~~~~-  148 (279)
                      . .          ...+.+..+++|+|+|.++|||.+.....         ..+.|                   ...| 
T Consensus       144 ~-~----------~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~  212 (388)
T 3bfn_A          144 G-R----------PWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRT  212 (388)
T ss_dssp             T-C----------SEEEEEEEEEEEEETTEEEESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC---
T ss_pred             C-C----------CceEEEEEEEEEEECCeeeehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccc
Confidence            1 0          11245666999999999999997543211         11111                   1011 


Q ss_pred             ---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37           149 ---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAE  189 (279)
Q Consensus       149 ---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~  189 (279)
                                                             ...+|+|+.......|.+++|+..||+||++|++||.+|++
T Consensus       213 ~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~  292 (388)
T 3bfn_A          213 VGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQ  292 (388)
T ss_dssp             --------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHT
T ss_pred             cccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhc
Confidence                                                   11256666666667889999999999999999999999985


Q ss_pred             hhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHHHHHHH
Q psy37           190 LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELHDE  269 (279)
Q Consensus       190 ~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~~l~~~  269 (279)
                          +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++|+|.|++|++.....+..+++.
T Consensus       293 ----~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~~~k~~  368 (388)
T 3bfn_A          293 ----GLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLS  368 (388)
T ss_dssp             ----TCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC--------------------
T ss_pred             ----CCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHHHHHHHH
Confidence                5679999999999999999999999999999999999999999999999999999999999998887766555544


Q ss_pred             HHHH
Q psy37           270 ITKL  273 (279)
Q Consensus       270 ~~~L  273 (279)
                      .+.|
T Consensus       369 ~~~l  372 (388)
T 3bfn_A          369 QKEL  372 (388)
T ss_dssp             ----
T ss_pred             HHHh
Confidence            4444

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=100.00  E-value=2.8e-61  Score=422.98  Aligned_cols=225  Identities=44%  Similarity=0.617  Sum_probs=177.6

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++++| |..+..... 
T Consensus        56 ~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~l-F~~i~~~~~-  133 (350)
T 2vvg_A           56 RTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHL-FDAINSSSS-  133 (350)
T ss_dssp             EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHTCCT-
T ss_pred             eEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHH-HHHHHhhcc-
Confidence            358899999999999999999999999999999999999999999999999999999999999999999 987752111 


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccC------------------------------------------
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG------------------------------------------  135 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~------------------------------------------  135 (279)
                                   ...+.+..+++|+|+|.++|||...                                          
T Consensus       134 -------------~~~~~v~vS~~EIYnE~i~DLL~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~  200 (350)
T 2vvg_A          134 -------------NQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHV  200 (350)
T ss_dssp             -------------TEEEEEEEEEEEEETTEEEETTTTEEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC--
T ss_pred             -------------CCcEEEEEEEEEEeCCEEEEcccCCcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhcccc
Confidence                         1124566699999999999999521                                          


Q ss_pred             --------CCceEEEe------------------ccccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37           136 --------SGKTFTMM------------------GSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAE  189 (279)
Q Consensus       136 --------~~~~~~~~------------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~  189 (279)
                              ++++|.+.                  +...-...+|+|++......|.+++|+..||+||++|++||.+|++
T Consensus       201 ~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~  280 (350)
T 2vvg_A          201 AATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVE  280 (350)
T ss_dssp             --------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence                    11222111                  0011122256676666667889999999999999999999999996


Q ss_pred             hhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHH
Q psy37           190 LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTR  261 (279)
Q Consensus       190 ~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~  261 (279)
                          +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++|+|.|++|+++.+.
T Consensus       281 ----~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~  348 (350)
T 2vvg_A          281 ----GATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA  348 (350)
T ss_dssp             ----TCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred             ----CCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchhc
Confidence                55899999999999999999999999999999999999999999999999999999999999987653

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=100.00  E-value=7.3e-60  Score=425.46  Aligned_cols=240  Identities=45%  Similarity=0.712  Sum_probs=175.7

Q ss_pred             cceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceec
Q psy37            10 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFD   89 (279)
Q Consensus        10 ~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~   89 (279)
                      .+.|+||++|+..|...++.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++||+|+++++| |.
T Consensus        95 ~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~l-F~  173 (443)
T 2owm_A           95 EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDL-FQ  173 (443)
T ss_dssp             CEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHH-HH
T ss_pred             CceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHH-HH
Confidence            56778888777776666678999999999999999999999999999999999999999999999999999999999 98


Q ss_pred             ccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC--------------ceEEEeccc---------
Q psy37            90 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG--------------KTFTMMGSK---------  146 (279)
Q Consensus        90 ~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~--------------~~~~~~g~~---------  146 (279)
                      .+....... .          +..+.+..+++|+|+|.|+|||.+...              ....+.|..         
T Consensus       174 ~i~~~~~~~-~----------~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e  242 (443)
T 2owm_A          174 RIASAQDET-P----------NISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEE  242 (443)
T ss_dssp             HHHHTTTTS-T----------TCEEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHH
T ss_pred             HHHhhhccc-C----------CceEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHH
Confidence            775432110 0          122556669999999999999975211              011111111         


Q ss_pred             ----------cc-------------------------------------------cccCccccchhhhhhhhhhhhhhHH
Q psy37           147 ----------AR-------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHI  173 (279)
Q Consensus       147 ----------~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~i  173 (279)
                                .|                                           ...+|+|++......|.+++|+..|
T Consensus       243 ~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~I  322 (443)
T 2owm_A          243 IIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNI  322 (443)
T ss_dssp             HHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCS
T ss_pred             HHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhh
Confidence                      11                                           1114556555555778999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCC------------------CCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHH
Q psy37           174 NKSLVTLGSVISSLAELSTK------------------KSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSET  235 (279)
Q Consensus       174 n~Sl~~L~~~i~~l~~~~~~------------------~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~t  235 (279)
                      |+||++|++||.+|++.+..                  +..||||||||||+||+|+|||+++|+||+||+|.  +++||
T Consensus       323 NkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ET  400 (443)
T 2owm_A          323 NKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDET  400 (443)
T ss_dssp             SHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHH
T ss_pred             cHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHH
Confidence            99999999999999864321                  23589999999999999999999999999999996  69999


Q ss_pred             HHHHHHHHHhccccCcccccC-CccHHHH
Q psy37           236 LSTLRYANRAKNIINKPTVNE-DPNTRII  263 (279)
Q Consensus       236 l~tL~fa~~~~~i~~~~~~~~-~~~~~~~  263 (279)
                      ++||+||+++++|+|+|++|+ ++.+...
T Consensus       401 lsTLrfA~rak~I~n~~~vN~~d~~~~~~  429 (443)
T 2owm_A          401 LSTLRYADQAKRIRTRAVVNQVDGVSAAE  429 (443)
T ss_dssp             HHHHHHHHHHTTCEECCCCCCC-------
T ss_pred             HHHHHHHHHHhhccccceecccCCccHHH
Confidence            999999999999999999998 6555443

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=100.00  E-value=3.5e-60  Score=418.13  Aligned_cols=218  Identities=38%  Similarity=0.566  Sum_probs=170.4

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC-----------CCCCCCCccccc
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA-----------TTDNSPDAHKDF   86 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~-----------~~G~~~~~~~~l   86 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..           .+|++|+++++|
T Consensus        55 ~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~l  134 (359)
T 1x88_A           55 KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQI  134 (359)
T ss_dssp             EEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHH
T ss_pred             eEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHH
Confidence            358999999999999999999999999999999999999999999999999999754           369999999999


Q ss_pred             eecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--------------eEEEeccccc----
Q psy37            87 TFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--------------TFTMMGSKAR----  148 (279)
Q Consensus        87 ~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--------------~~~~~g~~~~----  148 (279)
                       |..+...                ...+.+..+++|+|+|.++|||.+....              ...+.|....    
T Consensus       135 -F~~i~~~----------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s  197 (359)
T 1x88_A          135 -FEKLTDN----------------GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHN  197 (359)
T ss_dssp             -HHHTSSS----------------SEEEEEEEEEEEEETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECS
T ss_pred             -HHHHhcc----------------CceEEEEEEEEEEeCceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCC
Confidence             9876421                1225566699999999999999764321              1112211111    


Q ss_pred             ---------------------------------------------------------cccCccccchhhhhhhhhhhhhh
Q psy37           149 ---------------------------------------------------------NFGEGKDCVCSIVEAGDRLKEGA  171 (279)
Q Consensus       149 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~  171 (279)
                                                                               ...+|+|++......|.+++|+.
T Consensus       198 ~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~  277 (359)
T 1x88_A          198 KDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAG  277 (359)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------
T ss_pred             HHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHh
Confidence                                                                     11145666655667789999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCc
Q psy37           172 HINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK  251 (279)
Q Consensus       172 ~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~  251 (279)
                      .||+||++|++||.+|++    +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|.
T Consensus       278 ~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~  353 (359)
T 1x88_A          278 NINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK  353 (359)
T ss_dssp             CCCHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCC
T ss_pred             hhhHHHHHHHHHHHHHhc----CCCCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCc
Confidence            999999999999999995    6789999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q psy37           252 PTVNE  256 (279)
Q Consensus       252 ~~~~~  256 (279)
                      |++|+
T Consensus       354 p~vn~  358 (359)
T 1x88_A          354 PEVNQ  358 (359)
T ss_dssp             CC---
T ss_pred             ceeCC
Confidence            99986

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=100.00  E-value=5.6e-60  Score=414.97  Aligned_cols=225  Identities=36%  Similarity=0.516  Sum_probs=180.4

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++++| |..+..... 
T Consensus        44 ~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~l-F~~i~~~~~-  121 (349)
T 1t5c_A           44 KSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDI-FQKIKKFPD-  121 (349)
T ss_dssp             CEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHGGGCTT-
T ss_pred             eEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHH-HHHHHhCcC-
Confidence            358999999999999999999999999999999999999999999999999999999999999999999 988754211 


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC-ceE----------EEeccc-------------------c
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG-KTF----------TMMGSK-------------------A  147 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~-~~~----------~~~g~~-------------------~  147 (279)
                                    ..+.+..+++|+|+|.++|||.+... ...          .+.|..                   .
T Consensus       122 --------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~  187 (349)
T 1t5c_A          122 --------------REFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKS  187 (349)
T ss_dssp             --------------EEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHT
T ss_pred             --------------CcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcc
Confidence                          12455669999999999999964421 111          111111                   0


Q ss_pred             c--------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHH
Q psy37           148 R--------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSV  183 (279)
Q Consensus       148 ~--------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~  183 (279)
                      |                                            ...+|+|+.......|.+++|+..||+||++|++|
T Consensus       188 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~v  267 (349)
T 1t5c_A          188 RHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQV  267 (349)
T ss_dssp             TSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHH
T ss_pred             cccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHH
Confidence            0                                            11145555555556788999999999999999999


Q ss_pred             HHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHH
Q psy37           184 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRI  262 (279)
Q Consensus       184 i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~  262 (279)
                      |.+|++.+  ...|||||+||||+||+|+|||+++|+||+||+|.  +++||++||+||+++++|+|.|++|+++....
T Consensus       268 I~aL~~~~--~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~~  342 (349)
T 1t5c_A          268 IKKLSDGQ--VGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDEL  342 (349)
T ss_dssp             HHHHHHTC--CTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC----
T ss_pred             HHHHhccC--CCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCCC
Confidence            99998622  24699999999999999999999999999999996  69999999999999999999999998776654

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=100.00  E-value=8.1e-60  Score=414.87  Aligned_cols=226  Identities=36%  Similarity=0.470  Sum_probs=189.6

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC----CCCCCCCCCccccceecccccc
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS----KATTDNSPDAHKDFTFDHSYWS   94 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~----~~~~G~~~~~~~~l~f~~~~~~   94 (279)
                      .|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+    ...+|++|+++++| |..+...
T Consensus        48 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~l-F~~i~~~  126 (355)
T 1goj_A           48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQI-FTSILSS  126 (355)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHH-HHHHHTS
T ss_pred             EEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHH-HHHHHhc
Confidence            589999999999999999999999999999999999999999999999999996    45689999999999 9876432


Q ss_pred             cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEeccccc-----------------
Q psy37            95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMGSKAR-----------------  148 (279)
Q Consensus        95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g~~~~-----------------  148 (279)
                      ..              ...+.+..+++|+|+|.++|||.+.....         ..+.|....                 
T Consensus       127 ~~--------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~  192 (355)
T 1goj_A          127 AA--------------NIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGN  192 (355)
T ss_dssp             CT--------------TEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHH
T ss_pred             cc--------------CceEEEEEEEEEEECCEEEEcccCccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHh
Confidence            11              11255666999999999999997543211         111111111                 


Q ss_pred             -----------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37           149 -----------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL  187 (279)
Q Consensus       149 -----------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l  187 (279)
                                                               ...+|+|++......|.+++|+..||+||++|++||.+|
T Consensus       193 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL  272 (355)
T 1goj_A          193 ARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL  272 (355)
T ss_dssp             HHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHH
T ss_pred             hcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHH
Confidence                                                     112566666666677899999999999999999999999


Q ss_pred             HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHH
Q psy37           188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRI  262 (279)
Q Consensus       188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~  262 (279)
                      ++   .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|.|++|.++....
T Consensus       273 ~~---~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~  344 (355)
T 1goj_A          273 TD---GKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE  344 (355)
T ss_dssp             HH---CSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSS
T ss_pred             hc---CCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHHH
Confidence            86   4567999999999999999999999999999999999999999999999999999999999998776543

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=100.00  E-value=6.4e-60  Score=418.07  Aligned_cols=219  Identities=38%  Similarity=0.536  Sum_probs=169.5

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC-----------CCCCCCCccccce
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA-----------TTDNSPDAHKDFT   87 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~-----------~~G~~~~~~~~l~   87 (279)
                      .|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..           ++|++|+++++| 
T Consensus        68 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~l-  146 (373)
T 2wbe_C           68 KFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHL-  146 (373)
T ss_dssp             EEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHH-
T ss_pred             EEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHH-
Confidence            47888889999999999999999999999999999999999999999999999764           679999999999 


Q ss_pred             ecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce------------EEEeccccc-------
Q psy37            88 FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT------------FTMMGSKAR-------  148 (279)
Q Consensus        88 f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~------------~~~~g~~~~-------  148 (279)
                      |..+....                ..+.+..+++|+|+|.++|||.+.....            ..+.|....       
T Consensus       147 F~~i~~~~----------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e  210 (373)
T 2wbe_C          147 FDELRMME----------------VEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDD  210 (373)
T ss_dssp             HHHHHHCC----------------SCEEEEEEEEEEETTEEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHH
T ss_pred             HHHHHhcC----------------ceEEEEEEEEEEeCCeEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHH
Confidence            98764321                1255666999999999999997543211            111111111       


Q ss_pred             ------------------------------------------------------cccCccccchhhhhh-hhhhhhhhHH
Q psy37           149 ------------------------------------------------------NFGEGKDCVCSIVEA-GDRLKEGAHI  173 (279)
Q Consensus       149 ------------------------------------------------------~~~~~~~~~~~~~~~-~~~~~e~~~i  173 (279)
                                                                            ...+|+|++...... |.+++|+..|
T Consensus       211 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~I  290 (373)
T 2wbe_C          211 VYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNI  290 (373)
T ss_dssp             HHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEEEEEEEEEEECCCC--------------------
T ss_pred             HHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHH
Confidence                                                                  111444544444344 8899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37           174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT  253 (279)
Q Consensus       174 n~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~  253 (279)
                      |+||++|++||.+|++    +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|+|+
T Consensus       291 NkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~  366 (373)
T 2wbe_C          291 NQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPE  366 (373)
T ss_dssp             CHHHHHHHHHHHHHHH----CSSCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCC
T ss_pred             HHHHHHHHHHHHHHHc----CCCcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccce
Confidence            9999999999999996    568999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCc
Q psy37           254 VNEDP  258 (279)
Q Consensus       254 ~~~~~  258 (279)
                      +|++.
T Consensus       367 vN~~~  371 (373)
T 2wbe_C          367 VNQKL  371 (373)
T ss_dssp             CCEEC
T ss_pred             ecccc
Confidence            99753

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=100.00  E-value=2.4e-59  Score=413.83  Aligned_cols=233  Identities=48%  Similarity=0.731  Sum_probs=168.0

Q ss_pred             cceeeeccceeecCC-CCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC--CCCCCCCCccccc
Q psy37            10 HKDFTFDHSYWSFDP-SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK--ATTDNSPDAHKDF   86 (279)
Q Consensus        10 ~~~~~fd~~~f~fd~-vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~--~~~G~~~~~~~~l   86 (279)
                      .+.|+||++|+..+. --.+.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.  .++||+|+++++|
T Consensus        47 ~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~l  126 (366)
T 2zfi_A           47 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDL  126 (366)
T ss_dssp             CEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHH
T ss_pred             ceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHH
Confidence            345555555443211 1112289999999999999999999999999999999999999999984  5689999999999


Q ss_pred             eecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE----------EEecccc---------
Q psy37            87 TFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF----------TMMGSKA---------  147 (279)
Q Consensus        87 ~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~----------~~~g~~~---------  147 (279)
                       |..+......             ...+.+..+++|+|+|.++|||.+......          .+.|...         
T Consensus       127 -F~~i~~~~~~-------------~~~~~v~vS~~EIYnE~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~  192 (366)
T 2zfi_A          127 -FSRINDTTND-------------NMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDI  192 (366)
T ss_dssp             -HHHHHTCCCT-------------TEEEEEEEEEEEEETTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHH
T ss_pred             -HHHHhhcccC-------------CeeEEEEEEEEEeeCCeEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHH
Confidence             9877533211             112556669999999999999976532211          1111111         


Q ss_pred             -----------------------------------------------------ccccCccccchhhhhhhhhhhhhhHHH
Q psy37           148 -----------------------------------------------------RNFGEGKDCVCSIVEAGDRLKEGAHIN  174 (279)
Q Consensus       148 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~in  174 (279)
                                                                           -...+|+|++......|.+++|+..||
T Consensus       193 ~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN  272 (366)
T 2zfi_A          193 QDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANIN  272 (366)
T ss_dssp             HHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHH
T ss_pred             HHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHh
Confidence                                                                 011256666666667789999999999


Q ss_pred             HHHHHHHHHHHHHHhhh--------CCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37           175 KSLVTLGSVISSLAELS--------TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK  246 (279)
Q Consensus       175 ~Sl~~L~~~i~~l~~~~--------~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~  246 (279)
                      +||++|++||.+|++.+        ..+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|++
T Consensus       273 kSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak  352 (366)
T 2zfi_A          273 KSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK  352 (366)
T ss_dssp             HHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHh
Confidence            99999999999998743        1246799999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccccC
Q psy37           247 NIINKPTVNE  256 (279)
Q Consensus       247 ~i~~~~~~~~  256 (279)
                      +|++.|.++.
T Consensus       353 ~I~~~~~~~~  362 (366)
T 2zfi_A          353 QIRNTVSVNH  362 (366)
T ss_dssp             ----------
T ss_pred             hccCCCCCCC
Confidence            9999998864

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=100.00  E-value=9e-59  Score=406.19  Aligned_cols=228  Identities=30%  Similarity=0.419  Sum_probs=178.6

Q ss_pred             CcceeeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC------CCCCCCCCc
Q psy37             9 AHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK------ATTDNSPDA   82 (279)
Q Consensus         9 ~~~~~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~------~~~G~~~~~   82 (279)
                      ..+....+...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||.|+.      +++||+|++
T Consensus        52 ~~~~~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra  131 (344)
T 3dc4_A           52 DGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRA  131 (344)
T ss_dssp             CSSEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHH
T ss_pred             CCceEEecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHH
Confidence            34567778888999999999999999999999999999999999999999999999999999874      568999999


Q ss_pred             cccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC-------------------------
Q psy37            83 HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG-------------------------  137 (279)
Q Consensus        83 ~~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~-------------------------  137 (279)
                      +++| |..+.........            .+.+..+++|+|+|.++|||.....                         
T Consensus       132 ~~~L-F~~i~~~~~~~~~------------~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~v~s~~e~~~l  198 (344)
T 3dc4_A          132 LGDI-FERVTARQENNKD------------AIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHI  198 (344)
T ss_dssp             HHHH-HHHHHHSSSSCSS------------CCEEEEEEEEEESSCEEETTSSCTTSBCCSSTTTCSCCEECSSHHHHHHH
T ss_pred             HHHH-HHHHHhhhhcccc------------ceEEEEEEEEEeCCeeEEccCCCCCCccccccccCceecccCCHHHHHHH
Confidence            9999 9877533222111            1445569999999999999964322                         


Q ss_pred             --------------------ceEEEe----------ccccccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37           138 --------------------KTFTMM----------GSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL  187 (279)
Q Consensus       138 --------------------~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l  187 (279)
                                          ++|.+.          +...-...+|+|++......|.+++|+..||+||++|++||.+|
T Consensus       199 l~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL  278 (344)
T 3dc4_A          199 LELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM  278 (344)
T ss_dssp             HHHHHHTCC----------CCEEEEEEEEEECSSCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCCCCCCCceEEEEEEEEecCcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHH
Confidence                                111111          01111223677777777788999999999999999999999999


Q ss_pred             HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37           188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT  253 (279)
Q Consensus       188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~  253 (279)
                      ++    +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++.+..|.
T Consensus       279 ~~----~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~  340 (344)
T 3dc4_A          279 AA----GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHH  340 (344)
T ss_dssp             HT----TCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             hc----cCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence            95    678999999999999999999999999999999999999999999999999999988774

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.9e-59  Score=409.56  Aligned_cols=210  Identities=34%  Similarity=0.442  Sum_probs=157.9

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC---CCCCCCCccccceeccccccc
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA---TTDNSPDAHKDFTFDHSYWSF   95 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~---~~G~~~~~~~~l~f~~~~~~~   95 (279)
                      .|.||+||+ +++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..   ++|++||++++| |+......
T Consensus        73 ~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~l-F~~~~~~~  150 (359)
T 3nwn_A           73 SFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQV-FRMIEERP  150 (359)
T ss_dssp             EEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHH-HHHHHTCT
T ss_pred             EeecCccCC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHH-HHHhhcCC
Confidence            378888896 6899999999999999999999999999999999999999999754   489999999999 98765332


Q ss_pred             CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--------------eEEEecccc--------------
Q psy37            96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--------------TFTMMGSKA--------------  147 (279)
Q Consensus        96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--------------~~~~~g~~~--------------  147 (279)
                      ..               .+.+..+++|+|+|.++|||......              ...+.+...              
T Consensus       151 ~~---------------~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~  215 (359)
T 3nwn_A          151 TH---------------AITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLF  215 (359)
T ss_dssp             TS---------------CEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHH
T ss_pred             CC---------------cEEEEEEEEEEeccccccccccccccccccccceEEecCCceEEeccEEEEecCHHHHHHHHH
Confidence            21               14455699999999999999742110              011111111              


Q ss_pred             ----------------------------------------------ccccCccccchhhhhhhhhhhhhhHHHHHHHHHH
Q psy37           148 ----------------------------------------------RNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLG  181 (279)
Q Consensus       148 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~  181 (279)
                                                                    ....+|+|++......|++++|+..||+||++|+
T Consensus       216 ~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg  295 (359)
T 3nwn_A          216 EGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLE  295 (359)
T ss_dssp             HHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHH
T ss_pred             hhhhhcccccccCccccCcceEEEEEEEEeecccccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHH
Confidence                                                          1112566666666678899999999999999999


Q ss_pred             HHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           182 SVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       182 ~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      +||.+|++   .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+|+|
T Consensus       296 ~vI~aL~~---~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I  359 (359)
T 3nwn_A          296 QAIIALGD---QKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV  359 (359)
T ss_dssp             HHHHHHHC--------CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred             HHHHHHHh---cCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence            99999985   45679999999999999999999999999999999999999999999999999986

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=100.00  E-value=4.7e-58  Score=403.89  Aligned_cols=225  Identities=48%  Similarity=0.744  Sum_probs=177.0

Q ss_pred             CcceeeeccceeecCC-CCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccce
Q psy37             9 AHKDFTFDHSYWSFDP-SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFT   87 (279)
Q Consensus         9 ~~~~~~fd~~~f~fd~-vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~   87 (279)
                      ..+.|+||++||.+|. ++++.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++++| 
T Consensus        49 ~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~l-  127 (354)
T 3gbj_A           49 QPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGL-  127 (354)
T ss_dssp             CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHH-
T ss_pred             CceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHH-
Confidence            4678999999998886 45788999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC------------------------------
Q psy37            88 FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG------------------------------  137 (279)
Q Consensus        88 f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~------------------------------  137 (279)
                      |..+.......             ..+.+..+++|+|+|.++|||.+...                              
T Consensus       128 F~~i~~~~~~~-------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~  194 (354)
T 3gbj_A          128 FERTQKEENEE-------------QSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDI  194 (354)
T ss_dssp             HHHHHHHCBTT-------------EEEEEEEEEEEEETTEEEETTC------CBCBC------CCBTTCCCEEECSHHHH
T ss_pred             HHHHHhhcccc-------------cceeeeceeEEEecCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHH
Confidence            97764322111             12455669999999999999964321                              


Q ss_pred             -----------------------ceEEEe--------------------ccccccccCccccchhhhhhhhhhhhhhHHH
Q psy37           138 -----------------------KTFTMM--------------------GSKARNFGEGKDCVCSIVEAGDRLKEGAHIN  174 (279)
Q Consensus       138 -----------------------~~~~~~--------------------g~~~~~~~~~~~~~~~~~~~~~~~~e~~~in  174 (279)
                                             ++|.+.                    +...-...+|+|+.......|.+++|+..||
T Consensus       195 ~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN  274 (354)
T 3gbj_A          195 ESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNIN  274 (354)
T ss_dssp             HHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHH
T ss_pred             HHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhh
Confidence                                   111100                    0001112256666666667889999999999


Q ss_pred             HHHHHHHHHHHHHHhhhC--CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcc
Q psy37           175 KSLVTLGSVISSLAELST--KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN  247 (279)
Q Consensus       175 ~Sl~~L~~~i~~l~~~~~--~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~  247 (279)
                      +||++|++||.+|++.+.  .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||.+|+.
T Consensus       275 ~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~  349 (354)
T 3gbj_A          275 KSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH  349 (354)
T ss_dssp             HHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence            999999999999987432  3567999999999999999999999999999999999999999999999999985

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=100.00  E-value=4.2e-58  Score=399.79  Aligned_cols=217  Identities=39%  Similarity=0.516  Sum_probs=180.5

Q ss_pred             eeeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCC---CCCCCCccccceec
Q psy37            13 FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAT---TDNSPDAHKDFTFD   89 (279)
Q Consensus        13 ~~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~---~G~~~~~~~~l~f~   89 (279)
                      ...+...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..+   +|++|+++++| |.
T Consensus        39 ~~~~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~l-F~  117 (325)
T 1bg2_A           39 VVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDI-FN  117 (325)
T ss_dssp             EEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHH-HH
T ss_pred             EEECCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHH-HH
Confidence            344556689999999999999999999999999999999999999999999999999997554   59999999999 98


Q ss_pred             ccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEeccccc------------
Q psy37            90 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMGSKAR------------  148 (279)
Q Consensus        90 ~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g~~~~------------  148 (279)
                      .+.....              ...+.+..+++|+|+|.++|||.+.....         ..+.|....            
T Consensus       118 ~i~~~~~--------------~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll  183 (325)
T 1bg2_A          118 YIYSMDE--------------NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI  183 (325)
T ss_dssp             HHHHHCS--------------SEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHH
T ss_pred             HHHhccC--------------CceEEEEEEEEEEecCeeeecccCCCCCceEEECCCCCEEecCceEEeCCCHHHHHHHH
Confidence            7643211              12255666999999999999997533211         111111111            


Q ss_pred             ----------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHH
Q psy37           149 ----------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGS  182 (279)
Q Consensus       149 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~  182 (279)
                                                                    ...+|+|+.......|.+++|+..||+||++|++
T Consensus       184 ~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~  263 (325)
T 1bg2_A          184 DEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGN  263 (325)
T ss_dssp             HHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHH
T ss_pred             HHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHH
Confidence                                                          1115666666666788999999999999999999


Q ss_pred             HHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           183 VISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       183 ~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      ||.+|++    +..|||||+||||+||+|+|||+++|+||+||||+..+++||++||+||+|+|+|
T Consensus       264 vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I  325 (325)
T 1bg2_A          264 VISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI  325 (325)
T ss_dssp             HHHHHHT----TCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHc----CCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence            9999995    5789999999999999999999999999999999999999999999999999986

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=100.00  E-value=7.8e-58  Score=401.48  Aligned_cols=218  Identities=33%  Similarity=0.489  Sum_probs=174.6

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||+|+  ++|++|+++++| |..+......
T Consensus        52 ~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~l-F~~i~~~~~~  127 (347)
T 1f9v_A           52 HEFKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHI-FNWINKLKTK  127 (347)
T ss_dssp             EEEEESEEECTTCCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHH-HHHHHHHGGG
T ss_pred             eEEeeCEEECCCCCHHHHHHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHH-HHHHHhhhhc
Confidence            3589999999999999999986 59999999999999999999999999999996  479999999999 9876532211


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc-------------------eEEEeccc------------
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK-------------------TFTMMGSK------------  146 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~-------------------~~~~~g~~------------  146 (279)
                                   ...+.+..+++|+|+|.++|||.+....                   ...+.|..            
T Consensus       128 -------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~  194 (347)
T 1f9v_A          128 -------------GWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEI  194 (347)
T ss_dssp             -------------TCEEEEEEEEEEEETTEEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHH
T ss_pred             -------------CCceEEEEEEEEEECCeeeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHH
Confidence                         1125566699999999999999754321                   11111111            


Q ss_pred             -------cc---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHH
Q psy37           147 -------AR---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTL  180 (279)
Q Consensus       147 -------~~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L  180 (279)
                             .|                                       ...+|+|++......|.+++|+..||+||++|
T Consensus       195 ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aL  274 (347)
T 1f9v_A          195 ILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCL  274 (347)
T ss_dssp             HHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHH
Confidence                   11                                       11156666655667789999999999999999


Q ss_pred             HHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37           181 GSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT  253 (279)
Q Consensus       181 ~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~  253 (279)
                      ++||.+|++.+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++++..++
T Consensus       275 g~vI~aL~~~~-~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r  346 (347)
T 1f9v_A          275 GDVIHALGQPD-STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR  346 (347)
T ss_dssp             HHHHHHHTSCC----CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred             HHHHHHHhccc-CCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence            99999998522 1247999999999999999999999999999999999999999999999999999998875

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.8e-58  Score=400.27  Aligned_cols=211  Identities=35%  Similarity=0.544  Sum_probs=171.1

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS   98 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~   98 (279)
                      .|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++++| |..+.....  
T Consensus        49 ~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~l-F~~i~~~~~--  124 (330)
T 2h58_A           49 SFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLL-FSEVQEKAS--  124 (330)
T ss_dssp             EEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHTSCT--
T ss_pred             EEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHH-HHhhhcccC--
Confidence            589999999999999999985 7999999999999999999999999999999999999999999999 987753211  


Q ss_pred             CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce------------EEEecccc-------------------
Q psy37            99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT------------FTMMGSKA-------------------  147 (279)
Q Consensus        99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~------------~~~~g~~~-------------------  147 (279)
                                  +..+.+..+++|+|+|.++|||.+.....            ..+.|...                   
T Consensus       125 ------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~  192 (330)
T 2h58_A          125 ------------DWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTN  192 (330)
T ss_dssp             ------------TEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHH
T ss_pred             ------------CceEEEEEEEEEEECCChhhcccccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhh
Confidence                        11255666999999999999996432211            11111111                   


Q ss_pred             c---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy37           148 R---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLA  188 (279)
Q Consensus       148 ~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~  188 (279)
                      |                                       ...+|+|++......|.+++|+..||+||++|++||.+|+
T Consensus       193 R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~  272 (330)
T 2h58_A          193 RTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALR  272 (330)
T ss_dssp             TTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHh
Confidence            1                                       1114566665566778999999999999999999999998


Q ss_pred             hhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcccc
Q psy37           189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII  249 (279)
Q Consensus       189 ~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~  249 (279)
                      +    +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+
T Consensus       273 ~----~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~  329 (330)
T 2h58_A          273 S----RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE  329 (330)
T ss_dssp             T----TCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred             c----CCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence            4    67899999999999999999999999999999999999999999999999999986

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=4.4e-58  Score=404.19  Aligned_cols=214  Identities=36%  Similarity=0.488  Sum_probs=158.5

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS   98 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~   98 (279)
                      .|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++|++|+++.+| |..+...... 
T Consensus        73 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~l-f~~i~~~~~~-  150 (355)
T 3lre_A           73 KFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHL-YKCMDEIKEE-  150 (355)
T ss_dssp             EEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHHTTTT-
T ss_pred             eEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHH-HHhhhhhccC-
Confidence            58999999999999999999999999999999999999999999999999999999999999999999 9876532111 


Q ss_pred             CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--------eEEEecccc-----------------------
Q psy37            99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--------TFTMMGSKA-----------------------  147 (279)
Q Consensus        99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--------~~~~~g~~~-----------------------  147 (279)
                                   ..+.+..+++|+|+|.++|||.+...-        ...+.|...                       
T Consensus       151 -------------~~~~v~vS~~EIYnE~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~  217 (355)
T 3lre_A          151 -------------KICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQH  217 (355)
T ss_dssp             -------------EEEEEEEEEEEEETTEEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC
T ss_pred             -------------ceEEEEEEEEEEECCEEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcc
Confidence                         113445599999999999999643211        111111110                       


Q ss_pred             --------------------------------------ccccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37           148 --------------------------------------RNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAE  189 (279)
Q Consensus       148 --------------------------------------~~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l~~  189 (279)
                                                            -...+|+|+.......|.+++|+..||+||++|++||.+|++
T Consensus       218 ~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~  297 (355)
T 3lre_A          218 PTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALAD  297 (355)
T ss_dssp             -----CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC-
T ss_pred             cccCcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                                  111256666666667889999999999999999999999986


Q ss_pred             hhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           190 LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       190 ~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      .+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+|+|
T Consensus       298 ~~-~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I  355 (355)
T 3lre_A          298 SK-RKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI  355 (355)
T ss_dssp             --------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred             cc-CCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence            32 23469999999999999999999999999999999999999999999999999976

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=100.00  E-value=1.6e-57  Score=400.61  Aligned_cols=220  Identities=30%  Similarity=0.341  Sum_probs=170.8

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEecCCC-----CCCCCCCCccccceeccc
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTMMGSK-----ATTDNSPDAHKDFTFDHS   91 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl~G~~-----~~~G~~~~~~~~l~f~~~   91 (279)
                      ..|.||+||+++++|++||+.++.|+|+++++ |+|+||||||||||||||||+|+.     +.+|++|+++.+| |..+
T Consensus        50 ~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~l-F~~i  128 (360)
T 1ry6_A           50 HEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDI-FTFL  128 (360)
T ss_dssp             EEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHH-HHHH
T ss_pred             ceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHH-HHHH
Confidence            45899999999999999999999999999995 999999999999999999999974     6799999999999 9876


Q ss_pred             ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE--------EEec-------------------
Q psy37            92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF--------TMMG-------------------  144 (279)
Q Consensus        92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~--------~~~g-------------------  144 (279)
                      ......              ..+.+..+++|+|+|.++|||........        .+.|                   
T Consensus       129 ~~~~~~--------------~~~~v~vS~~EIYnE~v~DLL~~~~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g  194 (360)
T 1ry6_A          129 NIYDKD--------------NTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDG  194 (360)
T ss_dssp             HHHCSS--------------SCEEEEEEEEEEETTEEEESCCC-----------CCBCGGGSCCEEECSHHHHHHHHHHH
T ss_pred             HhhccC--------------CceEEEEEEEEeeCCeeEEcccCCccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHH
Confidence            432111              11345569999999999999975321100        0000                   


Q ss_pred             ccc------------------------------------ccccCccccchhhhhhh-hhhhhhhHHHHHHHHHHHHHHHH
Q psy37           145 SKA------------------------------------RNFGEGKDCVCSIVEAG-DRLKEGAHINKSLVTLGSVISSL  187 (279)
Q Consensus       145 ~~~------------------------------------~~~~~~~~~~~~~~~~~-~~~~e~~~in~Sl~~L~~~i~~l  187 (279)
                      ...                                    -...+|+|+.......+ .+++|+..||+||++|++||.+|
T Consensus       195 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL  274 (360)
T 1ry6_A          195 VLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM  274 (360)
T ss_dssp             HHHHHHCTTCCTTGGGGSEEEEEEEEEETTTTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccccccCCCccceEEEEEEEEeccCCcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            000                                    01114555544444333 56789999999999999999999


Q ss_pred             HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccC
Q psy37           188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNE  256 (279)
Q Consensus       188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~  256 (279)
                      +.    +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|+|.|+.+.
T Consensus       275 ~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~  339 (360)
T 1ry6_A          275 DS----DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK  339 (360)
T ss_dssp             TT----STTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred             hc----CCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence            84    678999999999999999999999999999999999999999999999999999999776654

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=100.00  E-value=3.2e-57  Score=398.26  Aligned_cols=216  Identities=31%  Similarity=0.482  Sum_probs=169.0

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS   98 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~   98 (279)
                      .|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||+|+  ++|++|+++++| |..+....+. 
T Consensus        54 ~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~l-F~~~~~~~~~-  128 (349)
T 3t0q_A           54 NFQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHI-FKWTANLKER-  128 (349)
T ss_dssp             EEEESEEECTTCCHHHHHHHH-HHHHHGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHH-HHHHHHHGGG-
T ss_pred             eeecCEEECCCccHHHHHHHH-HHHHHHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHH-HHHHHHhhhc-
Confidence            589999999999999999986 59999999999999999999999999999996  469999999999 9876532211 


Q ss_pred             CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC---------------------ceEEEecc------------
Q psy37            99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG---------------------KTFTMMGS------------  145 (279)
Q Consensus        99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~---------------------~~~~~~g~------------  145 (279)
                                  ...+.+..+++|+|+|.++|||.+...                     ....+.|.            
T Consensus       129 ------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~  196 (349)
T 3t0q_A          129 ------------GWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVD  196 (349)
T ss_dssp             ------------TEEEEEEEEEEEEETTEEEETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHH
T ss_pred             ------------CceeEEEEEEEEEEcchhhccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHH
Confidence                        112556669999999999999964321                     01111111            


Q ss_pred             -------ccc---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHH
Q psy37           146 -------KAR---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVT  179 (279)
Q Consensus       146 -------~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~  179 (279)
                             ..|                                       ...+|+|++......|++++|+..||+||++
T Consensus       197 ~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~a  276 (349)
T 3t0q_A          197 TILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSC  276 (349)
T ss_dssp             HHHHHC------------CTGGGSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHH
Confidence                   111                                       1115666666666788999999999999999


Q ss_pred             HHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcc
Q psy37           180 LGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKP  252 (279)
Q Consensus       180 L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~  252 (279)
                      |++||.+|++.+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|++.++..+
T Consensus       277 Lg~vI~aL~~~~-~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~  348 (349)
T 3t0q_A          277 LGDVIYALNTPD-AGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK  348 (349)
T ss_dssp             HHHHHHHHHSTT-GGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHhccc-CCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence            999999998622 223599999999999999999999999999999999999999999999999999998765

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2e-57  Score=401.64  Aligned_cols=211  Identities=37%  Similarity=0.564  Sum_probs=156.1

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC----CCCCCCCccccceecccccc
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA----TTDNSPDAHKDFTFDHSYWS   94 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~----~~G~~~~~~~~l~f~~~~~~   94 (279)
                      .|.||+||+++++|++||+.+. |+|+.+++|+|+||||||||||||||||+|+..    .+|++|+++++| |..+...
T Consensus        84 ~F~FD~Vf~~~~~Q~~Vy~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~l-F~~i~~~  161 (376)
T 2rep_A           84 DFSFDRVFPPGSGQDEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHL-FSVAQEL  161 (376)
T ss_dssp             EEECSEEECTTCCHHHHHHHHH-HHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHH-HHHHHHG
T ss_pred             eeeecEEcCCcccchhhhhhHH-HHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHH-HHHHHHh
Confidence            4899999999999999999965 899999999999999999999999999999754    689999999999 9876532


Q ss_pred             cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC----------------ceEEEeccccc----------
Q psy37            95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG----------------KTFTMMGSKAR----------  148 (279)
Q Consensus        95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~----------------~~~~~~g~~~~----------  148 (279)
                      ...             ...+.+..+++|+|+|.|+|||.+...                ....+.|....          
T Consensus       162 ~~~-------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~  228 (376)
T 2rep_A          162 SGQ-------------GWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDA  228 (376)
T ss_dssp             GGG-------------TEEEEEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHH
T ss_pred             hcC-------------CeEEEEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHH
Confidence            111             122556669999999999999976411                01111111110          


Q ss_pred             ------------------------------------------------cccCccccchhhhhhh----hhhhhhhHHHHH
Q psy37           149 ------------------------------------------------NFGEGKDCVCSIVEAG----DRLKEGAHINKS  176 (279)
Q Consensus       149 ------------------------------------------------~~~~~~~~~~~~~~~~----~~~~e~~~in~S  176 (279)
                                                                      ...+|+|++......|    ++++|+..||+|
T Consensus       229 ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkS  308 (376)
T 2rep_A          229 LLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSS  308 (376)
T ss_dssp             HHHHHHHHHHHCC-----CGGGSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------C
T ss_pred             HHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHH
Confidence                                                            1114555555555566    899999999999


Q ss_pred             HHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           177 LVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       177 l~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      |++|++||.+|++    +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|++++
T Consensus       309 L~aLg~vI~aL~~----~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~  376 (376)
T 2rep_A          309 LSTLGLVIMALSN----KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC  376 (376)
T ss_dssp             HHHHHHHHHHHHT----TCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhc----CCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence            9999999999995    6789999999999999999999999999999999999999999999999999864

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-57  Score=403.28  Aligned_cols=217  Identities=34%  Similarity=0.500  Sum_probs=173.7

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS   98 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~   98 (279)
                      .|.||+||+++++|++||+.+. |+|+.+++|+|+||||||||||||||||+|+  ++|++|+++++| |..+...... 
T Consensus       109 ~F~FD~VF~~~~~Q~~Vf~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~l-F~~i~~~~~~-  183 (403)
T 4etp_A          109 EFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHI-FNWINKLKTK-  183 (403)
T ss_dssp             EEEESEEECTTCCHHHHHHHHH-HHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHH-HHHHHHHHTT-
T ss_pred             EEEcCEEECCCCchHHHHHHHH-HHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHH-HHHHHhhhcc-
Confidence            5899999999999999999865 8999999999999999999999999999996  469999999999 9876532221 


Q ss_pred             CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC-------------------ceEEEeccc-------------
Q psy37            99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG-------------------KTFTMMGSK-------------  146 (279)
Q Consensus        99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~-------------------~~~~~~g~~-------------  146 (279)
                                  ...+.+..+++|+|++.++|||.+...                   ....+.|..             
T Consensus       184 ------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~l  251 (403)
T 4etp_A          184 ------------GWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEII  251 (403)
T ss_dssp             ------------TEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHH
T ss_pred             ------------CceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHH
Confidence                        112556669999999999999975431                   111122111             


Q ss_pred             ------cc---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHH
Q psy37           147 ------AR---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLG  181 (279)
Q Consensus       147 ------~~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~  181 (279)
                            .|                                       ...+|+|++......|.+++|+..||+||++|+
T Consensus       252 l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg  331 (403)
T 4etp_A          252 LKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALG  331 (403)
T ss_dssp             HHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHH
Confidence                  11                                       111466666556678899999999999999999


Q ss_pred             HHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37           182 SVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT  253 (279)
Q Consensus       182 ~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~  253 (279)
                      +||.+|++.+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|++.++..|+
T Consensus       332 ~vI~aL~~~~-~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r  402 (403)
T 4etp_A          332 DVIHALGQPD-STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR  402 (403)
T ss_dssp             HHHHHHTSSC-TTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHhccc-CCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence            9999998522 2346999999999999999999999999999999999999999999999999999998875

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=100.00  E-value=6.7e-57  Score=395.80  Aligned_cols=212  Identities=39%  Similarity=0.537  Sum_probs=163.0

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC------CCCCCCCCCccccceeccc
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS------KATTDNSPDAHKDFTFDHS   91 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~------~~~~G~~~~~~~~l~f~~~   91 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+      .+++|++|+++++| |..+
T Consensus        50 ~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~l-F~~i  128 (344)
T 4a14_A           50 RHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEA-FKLI  128 (344)
T ss_dssp             EEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHH-HHHH
T ss_pred             ceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHH-HHhc
Confidence            3589999999999999999999999999999999999999999999999999997      46799999999999 9877


Q ss_pred             ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc-----------eEEEeccc--------------
Q psy37            92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK-----------TFTMMGSK--------------  146 (279)
Q Consensus        92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~-----------~~~~~g~~--------------  146 (279)
                      .....               ..+.+..+++|+|+|.++|||......           ...+.|..              
T Consensus       129 ~~~~~---------------~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll  193 (344)
T 4a14_A          129 DENDL---------------LDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLL  193 (344)
T ss_dssp             HHCTT---------------SEEEEEEEEEEEETTEEEETTSSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHH
T ss_pred             ccccc---------------eeeEEEEehhhhhHHHHHHHHHhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHH
Confidence            53211               124456699999999999999633210           01111110              


Q ss_pred             ----------------------------------------------------cccccCccccchhhhhhhhhhhhhhHHH
Q psy37           147 ----------------------------------------------------ARNFGEGKDCVCSIVEAGDRLKEGAHIN  174 (279)
Q Consensus       147 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~e~~~in  174 (279)
                                                                          .-...+|+|++......|.+++|+..||
T Consensus       194 ~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN  273 (344)
T 4a14_A          194 EMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQIN  273 (344)
T ss_dssp             HHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEEEEEECCCCCCC--------------CCC
T ss_pred             HhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeeeeEEecccchhhcccCCchhhhhhheeec
Confidence                                                                0112256666666667889999999999


Q ss_pred             HHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37           175 KSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK  246 (279)
Q Consensus       175 ~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~  246 (279)
                      +||++|++||.+|++.+ .+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|||
T Consensus       274 ~SL~aLg~vI~aL~~~~-~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk  344 (344)
T 4a14_A          274 SSLLALGNVISALGDPQ-RRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ  344 (344)
T ss_dssp             SHHHHHHHHHHHHTCTT-TTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred             hhHHhhhhHHHhcCCcc-ccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence            99999999999998632 245699999999999999999999999999999999999999999999999986

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=100.00  E-value=1.1e-56  Score=397.11  Aligned_cols=216  Identities=36%  Similarity=0.467  Sum_probs=162.2

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCC------CCCCCCCCCccccceeccc
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS------KATTDNSPDAHKDFTFDHS   91 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~------~~~~G~~~~~~~~l~f~~~   91 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+      ...+|++|++++++ |..+
T Consensus       101 ~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~l-F~~~  179 (387)
T 2heh_A          101 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDV-FLLK  179 (387)
T ss_dssp             EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHH-HHHH
T ss_pred             cEEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHH-HHHh
Confidence            4589999999999999999999999999999999999999999999999999996      34689999999999 8776


Q ss_pred             ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc--------eEEEeccccc---------------
Q psy37            92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK--------TFTMMGSKAR---------------  148 (279)
Q Consensus        92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~--------~~~~~g~~~~---------------  148 (279)
                      ....             .....+.+..+++|+|+|.++|||.+...-        ...+.|....               
T Consensus       180 ~~~~-------------~~~~~~~V~vS~~EIYnE~v~DLL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G  246 (387)
T 2heh_A          180 NQPC-------------YRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMG  246 (387)
T ss_dssp             TSHH-------------HHTTTCEEEEEEEEEETTEEEETTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHH
T ss_pred             hccc-------------ccCceEEEEEEEEEecCCeEEECCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHH
Confidence            4211             122235566699999999999999743211        1111111111               


Q ss_pred             --------------------------------------cccCccccchhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37           149 --------------------------------------NFGEGKDCVCSIV-EAGDRLKEGAHINKSLVTLGSVISSLAE  189 (279)
Q Consensus       149 --------------------------------------~~~~~~~~~~~~~-~~~~~~~e~~~in~Sl~~L~~~i~~l~~  189 (279)
                                                            ...+|+|+..... ..+.+++|+..||+||++|++||.+|++
T Consensus       247 ~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~  326 (387)
T 2heh_A          247 SACRTSGQTFANSNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ  326 (387)
T ss_dssp             HHHC---------CGGGSEEEEEEEEESSSSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHT
T ss_pred             HhhCCcccCcCcCCcccceEEEEEEEEECCeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc
Confidence                                                  1114455443332 2346677999999999999999999984


Q ss_pred             hhCCCCCcccccchhHHHHhHhh-cCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCc
Q psy37           190 LSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK  251 (279)
Q Consensus       190 ~~~~~~~~ipyr~SkLT~lL~~~-l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~  251 (279)
                          +..|||||+||||+||+|+ |||+++|+||+||||...+++||++||+||+|+++|++.
T Consensus       327 ----~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~  385 (387)
T 2heh_A          327 ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH  385 (387)
T ss_dssp             ----TCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred             ----CCCCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence                6789999999999999999 699999999999999999999999999999999999875

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=100.00  E-value=8.9e-57  Score=401.96  Aligned_cols=219  Identities=31%  Similarity=0.477  Sum_probs=168.7

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccC
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFD   96 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~   96 (279)
                      ...|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||+|+++++|++|+++++| |..+.....
T Consensus       105 ~~~F~FD~VF~~~~~Q~~Vf~~v-~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~l-F~~i~~~~~  182 (412)
T 3u06_A          105 QQIFSFDQVFHPLSSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL-FDSIRGYRN  182 (412)
T ss_dssp             CCEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHH-HHHHHHHGG
T ss_pred             ceEEeeCeEcCCCCCHHHHHHHH-HHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHH-HHhhhhhcc
Confidence            34689999999999999999864 6999999999999999999999999999999999999999999999 987643211


Q ss_pred             CCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce-----------EEEeccccccc---------------
Q psy37            97 PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT-----------FTMMGSKARNF---------------  150 (279)
Q Consensus        97 ~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~-----------~~~~g~~~~~~---------------  150 (279)
                      .             ...+.+..+++|+|++.++|||.+.....           ..+.|.....+               
T Consensus       183 ~-------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~  249 (412)
T 3u06_A          183 L-------------GWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKM  249 (412)
T ss_dssp             G-------------TEEEEEEEEEEEEETTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHH
T ss_pred             c-------------CceEEEEEEEEEEeCCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHh
Confidence            1             12255666999999999999996543211           11222111111               


Q ss_pred             ------------cCccccchhhh---------------------------hhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy37           151 ------------GEGKDCVCSIV---------------------------EAGDRLKEGAHINKSLVTLGSVISSLAELS  191 (279)
Q Consensus       151 ------------~~~~~~~~~~~---------------------------~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~  191 (279)
                                  ++.+|++..+.                           ..+.+++|+..||+||++|++||.+|++  
T Consensus       250 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~~~rl~E~~~INkSL~aLg~vI~aL~~--  327 (412)
T 3u06_A          250 NRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQ--  327 (412)
T ss_dssp             HCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC----------CTTTHHHHHHHHHHHHHHT--
T ss_pred             cccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCCccchhHhHHHHhHHHHHHHHHHHHHhc--
Confidence                        12333322211                           3467899999999999999999999994  


Q ss_pred             CCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccc
Q psy37           192 TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTV  254 (279)
Q Consensus       192 ~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~  254 (279)
                        +..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+++++++..+..
T Consensus       328 --~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~  388 (412)
T 3u06_A          328 --KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK  388 (412)
T ss_dssp             --TCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC----
T ss_pred             --cCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccccc
Confidence              6789999999999999999999999999999999999999999999999999999865533

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=100.00  E-value=1.2e-56  Score=399.07  Aligned_cols=218  Identities=36%  Similarity=0.461  Sum_probs=163.5

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC------CCCCCCCCccccceeccc
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK------ATTDNSPDAHKDFTFDHS   91 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~------~~~G~~~~~~~~l~f~~~   91 (279)
                      ..|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.      ..+|++|+++++| |..+
T Consensus       121 ~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~l-F~~~  199 (410)
T 1v8k_A          121 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDV-FLLK  199 (410)
T ss_dssp             EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHH-HHHH
T ss_pred             eEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHH-HHHH
Confidence            45899999999999999999999999999999999999999999999999999963      4589999999999 8766


Q ss_pred             ccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCC--------ceEEEecccc----------------
Q psy37            92 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG--------KTFTMMGSKA----------------  147 (279)
Q Consensus        92 ~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~--------~~~~~~g~~~----------------  147 (279)
                      ....             .....+.+..+++|+|++.|+|||.+...        ....+.|...                
T Consensus       200 ~~~~-------------~~~~~~~V~vS~lEIYnE~i~DLL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G  266 (410)
T 1v8k_A          200 NQPR-------------YRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMG  266 (410)
T ss_dssp             TSHH-------------HHTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHH
T ss_pred             hhhc-------------ccCccEEEEEEEEEeeCCEEEECCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHH
Confidence            4211             11223556669999999999999974321        1111111111                


Q ss_pred             ---c----------------------------------cccCccccchhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy37           148 ---R----------------------------------NFGEGKDCVCSIV-EAGDRLKEGAHINKSLVTLGSVISSLAE  189 (279)
Q Consensus       148 ---~----------------------------------~~~~~~~~~~~~~-~~~~~~~e~~~in~Sl~~L~~~i~~l~~  189 (279)
                         |                                  ...+|+|+..... ..+.++.|+..||+||++|++||.+|++
T Consensus       267 ~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~  346 (410)
T 1v8k_A          267 SACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ  346 (410)
T ss_dssp             HHTCC--------CCCSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhhCCcccccCCCCCCCceEEEEEEEEeCCcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc
Confidence               1                                  1114455443332 2456677999999999999999999984


Q ss_pred             hhCCCCCcccccchhHHHHhHhh-cCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37           190 LSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT  253 (279)
Q Consensus       190 ~~~~~~~~ipyr~SkLT~lL~~~-l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~  253 (279)
                          +..|||||+||||+||+|+ |||+++|+||+||||+..+++||++||+||++++.|...|-
T Consensus       347 ----~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~  407 (410)
T 1v8k_A          347 ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH  407 (410)
T ss_dssp             ----------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred             ----CCCCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence                6789999999999999999 69999999999999999999999999999999999988773

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=100.00  E-value=2.6e-53  Score=408.14  Aligned_cols=214  Identities=37%  Similarity=0.516  Sum_probs=167.7

Q ss_pred             ccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceeccccccc
Q psy37            16 DHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSF   95 (279)
Q Consensus        16 d~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~   95 (279)
                      ....|.||+||+++++|++||+.+ .|+|+.+++|+|+||||||||||||||||.|+  ++||+||++++| |..+....
T Consensus       428 ~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~l-f~~~~~~~  503 (715)
T 4h1g_A          428 SNLRFLFDKIFEREQSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKI-FNDIEELK  503 (715)
T ss_dssp             EEEEEECSEEECSSCCHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHH-HHHHHHHG
T ss_pred             CCeEEEeceEeCCCCCHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHH-HHHHHHhh
Confidence            334589999999999999999876 49999999999999999999999999999994  589999999999 98765322


Q ss_pred             CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc-------------eEEEeccc----------------
Q psy37            96 DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK-------------TFTMMGSK----------------  146 (279)
Q Consensus        96 ~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~-------------~~~~~g~~----------------  146 (279)
                      +.             ...+.+..|++|+|++.++|||.+....             ...+.|..                
T Consensus       504 ~~-------------~~~~~v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~  570 (715)
T 4h1g_A          504 EK-------------GWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQ  570 (715)
T ss_dssp             GG-------------TEEEEEEEEEEEEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHH
T ss_pred             cC-------------CceEEEEEEEEEEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHH
Confidence            11             1124566699999999999999743210             11111111                


Q ss_pred             ---cc---------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHH
Q psy37           147 ---AR---------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVI  184 (279)
Q Consensus       147 ---~~---------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i  184 (279)
                         .|                                       ...+|+|++......|.+++|+..||+||++|++||
T Consensus       571 g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi  650 (715)
T 4h1g_A          571 ANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVI  650 (715)
T ss_dssp             HHCC----------CGGGSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCcccccccCccccccEEEEEEEEEEecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence               11                                       111456665555677899999999999999999999


Q ss_pred             HHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcccc
Q psy37           185 SSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII  249 (279)
Q Consensus       185 ~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~  249 (279)
                      .+|+.   ++..|||||+||||+||+|+|||+|+|+||+||||+..+++||++||+||+|+|+|+
T Consensus       651 ~al~~---~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~  712 (715)
T 4h1g_A          651 HSLNL---KDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR  712 (715)
T ss_dssp             HHHHH---CSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred             HHHhh---cCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence            99986   566899999999999999999999999999999999999999999999999999996

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.97  E-value=4.4e-32  Score=193.60  Aligned_cols=98  Identities=44%  Similarity=0.596  Sum_probs=89.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcccc
Q psy37           170 GAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII  249 (279)
Q Consensus       170 ~~~in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~  249 (279)
                      +..||+||++|++||.+|++   ....||||||||||++|+|+|||+++|+||+||+|+..+++||++||+||+++++|+
T Consensus         1 a~~IN~SL~~Lg~vI~aL~~---~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~   77 (100)
T 2kin_B            1 AKNINKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIK   77 (100)
T ss_dssp             CCBSSHHHHHHHHHHHHHHH---TCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCE
T ss_pred             CCcchHHHHHHHHHHHHHHh---cCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhcc
Confidence            35799999999999999986   346899999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCccHH-HHHHHHHHH
Q psy37           250 NKPTVNEDPNTR-IIRELHDEI  270 (279)
Q Consensus       250 ~~~~~~~~~~~~-~~~~l~~~~  270 (279)
                      +.|.+|.+.... ++++|++|+
T Consensus        78 ~~~~~n~~~~~~~l~~~~~~e~   99 (100)
T 2kin_B           78 NTVSVNLELTAEEWKKKYEKEK   99 (100)
T ss_dssp             EEECCEEECCHHHHHHHHHHHH
T ss_pred             CcceeccCCCHHHHHHHHHHhh
Confidence            999999877664 556777765

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.96  E-value=1.2e-29  Score=187.45  Aligned_cols=85  Identities=49%  Similarity=0.682  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccc
Q psy37           174 NKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPT  253 (279)
Q Consensus       174 n~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~  253 (279)
                      |+||++|++||.+|++   +...|||||+||||++|+|+|||+++|+||+||+|+..+++||++||+||+++++|++.|.
T Consensus         1 N~SL~~Lg~vi~aL~~---~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~   77 (117)
T 3kin_B            1 NKSLSALGNVISALAE---GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS   77 (117)
T ss_dssp             CCHHHHHHHHHHHHHH---SCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             CCCHHHHHHHHHHHHh---CCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCce
Confidence            7899999999999996   4457999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccHH
Q psy37           254 VNEDPNTR  261 (279)
Q Consensus       254 ~~~~~~~~  261 (279)
                      +|.+....
T Consensus        78 ~n~~~~~~   85 (117)
T 3kin_B           78 VNLELTAE   85 (117)
T ss_dssp             CCBCCCHH
T ss_pred             ecCcCCHH
Confidence            99877664

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=5e-16  Score=129.20  Aligned_cols=192  Identities=12%  Similarity=0.117  Sum_probs=115.8

Q ss_pred             ceeecCCCCCCCCCHH--HHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccc
Q psy37            18 SYWSFDPSSPQFASQE--QVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWS   94 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~--~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~   94 (279)
                      ..|.||+||++++.|+  +||+++. ++|+.+++ |+|+|||||||||||||             |+++..+ |..... 
T Consensus        57 k~f~FDRVf~p~s~Qe~~~vf~E~~-~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~-f~~~~~-  120 (298)
T 2o0a_A           57 HVYKFNRVIPHLKVSEDKFFTQEYS-VYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKF-LAEKDT-  120 (298)
T ss_dssp             CEEECSEEEETTTSCHHHHHHHTTH-HHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHH-HHSTTS-
T ss_pred             ceEEeeeEECccccccHHHHHHHHH-HHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHH-HHHhhh-
Confidence            4689999999999999  9999965 99999999 99999999999999999             8888888 655421 


Q ss_pred             cCCCCcccccHHHHHhhhchhhHhhhhhcc-ceeeeeccccC-CCce----------EEEeccccccccCccccchhhh-
Q psy37            95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGY-NACVFAYGQTG-SGKT----------FTMMGSKARNFGEGKDCVCSIV-  161 (279)
Q Consensus        95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~-~~~v~dl~~~~-~~~~----------~~~~g~~~~~~~~~~~~~~~~~-  161 (279)
                                   ++. ..+.+..+++++| ++.++|||... .+..          ..+.+.....+..|.+.+.... 
T Consensus       121 -------------~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~  186 (298)
T 2o0a_A          121 -------------IYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFS  186 (298)
T ss_dssp             -------------HHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTT
T ss_pred             -------------hcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhh
Confidence                         000 1244555999999 99999999622 2211          1222333333334222211111 


Q ss_pred             -------h-hhh------------hhhhh---hHH-------H--HHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHh
Q psy37           162 -------E-AGD------------RLKEG---AHI-------N--KSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLL  209 (279)
Q Consensus       162 -------~-~~~------------~~~e~---~~i-------n--~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL  209 (279)
                             . .|.            .+++-   ..+       +  ++...|.+   ++.    .+    .+-.|+++-+|
T Consensus       187 ~~~~~~~~~~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~~~~~~l~~---~~~----~~----~~~~spi~~il  255 (298)
T 2o0a_A          187 CDEHPNLPHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLKSIEQFDK---SIF----KK----ESCETPIALVL  255 (298)
T ss_dssp             CC-------CEEEEEEEEEEESCC-------CCCEEEEEEEECSHHHHHHHHH---HHH----TC-----CCCSHHHHHH
T ss_pred             cccccccCCCCceEEEEEEecCcccccccCCCCceEEEEEEeCCHHHHHHHHh---hcc----cc----cccCCcHHHHH
Confidence                   0 000            00110   000       0  11222222   332    11    35568888888


Q ss_pred             HhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCccccc
Q psy37           210 KDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVN  255 (279)
Q Consensus       210 ~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~  255 (279)
                      +-.| -..+.++++++..+.    +.-..|..++++.+++|..+.+
T Consensus       256 ~~ll-~~tks~~~~~l~~~~----~~~~lL~~s~~i~~~~~~~~~~  296 (298)
T 2o0a_A          256 KKLI-SDTKSFFLLNLNDSK----NVNKLLTISEEVQTQLCKRKKK  296 (298)
T ss_dssp             HHHH-HHSBCEEEEEECCGG----GHHHHHHHHHHHHHHTC-----
T ss_pred             HHHH-hcCcceEEEEecCCC----chhHHHHHHHHhhcccCccccc
Confidence            8877 457888999998543    2233689999999988866543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.38  E-value=0.001  Score=52.07  Aligned_cols=50  Identities=20%  Similarity=0.176  Sum_probs=36.6

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ++||.....+..|+++++.+. .+++++-......++-+|++|+|||+.+.
T Consensus         7 ~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~G~~G~GKTtL~~   56 (180)
T 3ec2_A            7 ANLDTYHPKNVSQNRALLTIR-VFVHNFNPEEGKGLTFVGSPGVGKTHLAV   56 (180)
T ss_dssp             CCSSSCCCCSHHHHHHHHHHH-HHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred             CccccccCCCHHHHHHHHHHH-HHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence            456776666667888876664 67776654445678889999999999873

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.36  E-value=0.0084  Score=47.58  Aligned_cols=50  Identities=16%  Similarity=0.117  Sum_probs=33.7

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhcccc-CeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGY-NACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~-n~~v~~yG~tgSGKT~Tl~   70 (279)
                      +.||.+...+..+.++++.+. ..+...-.+. +..|+.+|++|+|||+.+.
T Consensus        22 ~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~GtGKT~la~   72 (202)
T 2w58_A           22 ASLSDVDLNDDGRIKAIRFAE-RFVAEYEPGKKMKGLYLHGSFGVGKTYLLA   72 (202)
T ss_dssp             CCTTSSCCSSHHHHHHHHHHH-HHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred             CCHhhccCCChhHHHHHHHHH-HHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence            467766655556677777543 5555543332 2688999999999999863

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.20  E-value=0.006  Score=52.28  Aligned_cols=51  Identities=20%  Similarity=0.328  Sum_probs=33.4

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      +.||.+...+..+..++.. +...++..-.+....|+.||++|+||||.+.+
T Consensus       121 ~tfd~f~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a  171 (308)
T 2qgz_A          121 IHLSDIDVNNASRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA  171 (308)
T ss_dssp             CCGGGSCCCSHHHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred             CCHhhCcCCChHHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence            3555544333355666663 33566665444457789999999999998743

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=93.61  E-value=0.025  Score=50.87  Aligned_cols=63  Identities=54%  Similarity=1.118  Sum_probs=53.6

Q ss_pred             ccceecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37            84 KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus        84 ~~l~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      +.+.|+.+.|.........+++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        96 ~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~  158 (443)
T 2owm_A           96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP  158 (443)
T ss_dssp             EEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCT
T ss_pred             ceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCC
Confidence            345577777766555556788999999999999999999999999999999999999999853

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=92.81  E-value=0.079  Score=43.83  Aligned_cols=50  Identities=18%  Similarity=0.149  Sum_probs=32.2

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHH-----HHHhccccCeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDV-----VDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~l-----v~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      +.|+.+.+.+...+.+.+.+. .+     ...+-......|+-||++|+|||+.+.
T Consensus         8 ~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~   62 (268)
T 2r62_A            8 VRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK   62 (268)
T ss_dssp             CCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred             CCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence            567888888877777755332 21     111111234459999999999999863

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=92.56  E-value=0.039  Score=42.45  Aligned_cols=29  Identities=17%  Similarity=0.179  Sum_probs=22.3

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+++.+..+....|+.+|++|+|||+.+.
T Consensus        33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~   61 (187)
T 2p65_A           33 RAIQILSRRTKNNPILLGDPGVGKTAIVE   61 (187)
T ss_dssp             HHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred             HHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence            44445555667789999999999999863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=92.26  E-value=0.072  Score=40.99  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=21.9

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .+++.+..+....++.+|++|+|||+.+
T Consensus        33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~   60 (195)
T 1jbk_A           33 RTIQVLQRRTKNNPVLIGEPGVGKTAIV   60 (195)
T ss_dssp             HHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred             HHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence            3444555566778999999999999987

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=91.70  E-value=0.057  Score=45.72  Aligned_cols=38  Identities=16%  Similarity=0.338  Sum_probs=26.7

Q ss_pred             HHHHHHHhHHHHHHHhcc--ccC--eeEeeccCcCCCceeEe
Q psy37            32 QEQVFNDLGMDVVDAAFE--GYN--ACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        32 q~~vy~~~~~~lv~~v~~--G~n--~~v~~yG~tgSGKT~Tl   69 (279)
                      -..+.+.++..++.+.+.  |..  ..|+.||++|+|||+..
T Consensus        12 ~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la   53 (293)
T 3t15_A           12 APAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC   53 (293)
T ss_dssp             CHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence            345666666677777653  322  36888999999999976

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=91.66  E-value=0.067  Score=46.87  Aligned_cols=62  Identities=56%  Similarity=1.146  Sum_probs=50.3

Q ss_pred             cceeccccccc-CCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37            85 DFTFDHSYWSF-DPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus        85 ~l~f~~~~~~~-~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      .+.|+...+.. .......+++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        49 ~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~  111 (366)
T 2zfi_A           49 SFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ  111 (366)
T ss_dssp             EEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCS
T ss_pred             EEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCC
Confidence            34466665544 233344578999999999999999999999999999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=91.49  E-value=0.085  Score=45.07  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=28.5

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      |.||.+.. ...+...+.. +..+++.-- +....++-||++|+|||+.+.
T Consensus         8 ~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~   55 (324)
T 1l8q_A            8 YTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ   55 (324)
T ss_dssp             CCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred             CCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence            46666542 2344445444 333443311 134578999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=91.31  E-value=0.14  Score=41.09  Aligned_cols=45  Identities=20%  Similarity=0.359  Sum_probs=28.1

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      +.||.+... ..++++++.+     ..+. .+....++.||++|+|||+.+.
T Consensus        25 ~~~~~~~~~-~~~~~~~~~l-----~~~~~~~~~~~~ll~G~~G~GKT~la~   70 (242)
T 3bos_A           25 ETFTSYYPA-AGNDELIGAL-----KSAASGDGVQAIYLWGPVKSGRTHLIH   70 (242)
T ss_dssp             CSTTTSCC---CCHHHHHHH-----HHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred             CChhhccCC-CCCHHHHHHH-----HHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence            567776652 2334444432     2333 3356789999999999999863

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=91.31  E-value=0.061  Score=44.53  Aligned_cols=44  Identities=20%  Similarity=0.148  Sum_probs=22.5

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      |+||.+.+.+..-..+.+     .+..+.. .+..|+-+|++|+|||+..
T Consensus         3 ~~f~~~ig~~~~~~~~~~-----~~~~~~~-~~~~vll~G~~GtGKt~la   46 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLE-----QVSHLAP-LDKPVLIIGERGTGKELIA   46 (265)
T ss_dssp             -------CCCHHHHHHHH-----HHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred             cccccceeCCHHHHHHHH-----HHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence            456666654433333322     2333332 3467889999999999876

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=91.17  E-value=0.083  Score=46.07  Aligned_cols=62  Identities=55%  Similarity=1.107  Sum_probs=50.8

Q ss_pred             cceecccccccCCCC-cccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37            85 DFTFDHSYWSFDPSS-PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus        85 ~l~f~~~~~~~~~~~-~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      .+.|+...|..+... ...+.+.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        52 ~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~  114 (354)
T 3gbj_A           52 VFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA  114 (354)
T ss_dssp             EEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS
T ss_pred             EEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC
Confidence            344677666544332 45678999999999999999999999999999999999999998854

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=91.12  E-value=0.066  Score=45.99  Aligned_cols=22  Identities=14%  Similarity=0.078  Sum_probs=19.8

Q ss_pred             ccccCeeEeeccCcCCCceeEe
Q psy37            48 FEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        48 ~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      -.|...+++.||++|+|||.++
T Consensus        41 ~~~~~~~lli~GpPGTGKT~~v   62 (318)
T 3te6_A           41 MSSQNKLFYITNADDSTKFQLV   62 (318)
T ss_dssp             HTTCCCEEEEECCCSHHHHHHH
T ss_pred             cCCCCCeEEEECCCCCCHHHHH
Confidence            4688889999999999999987

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=90.59  E-value=0.074  Score=43.68  Aligned_cols=17  Identities=35%  Similarity=0.427  Sum_probs=14.9

Q ss_pred             eEeeccCcCCCceeEec
Q psy37            54 CVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        54 ~v~~yG~tgSGKT~Tl~   70 (279)
                      .++.||++|+|||+.+-
T Consensus        51 g~ll~G~~G~GKTtl~~   67 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLAR   67 (254)
T ss_dssp             EEEEECCTTSSHHHHHH
T ss_pred             eEEEECCCCCCHHHHHH
Confidence            38999999999999873

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=90.49  E-value=0.069  Score=40.34  Aligned_cols=20  Identities=20%  Similarity=0.665  Sum_probs=16.0

Q ss_pred             CeeEeeccCcCCCceeEecC
Q psy37            52 NACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ...++.+|++|+|||+.+..
T Consensus        36 g~~~~l~G~~G~GKTtL~~~   55 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQA   55 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHH
Confidence            34677799999999998743

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=90.47  E-value=0.11  Score=44.02  Aligned_cols=50  Identities=16%  Similarity=0.115  Sum_probs=30.4

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHH-----HhccccCeeEeeccCcCCCceeEe
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVD-----AAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~-----~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..||.+.+.+.--+++.+.+..|+..     ..--.....|+-||++|+|||+.+
T Consensus        12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la   66 (301)
T 3cf0_A           12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA   66 (301)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence            45666666555555555555444221     111123457999999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=90.37  E-value=0.11  Score=43.37  Aligned_cols=51  Identities=12%  Similarity=0.141  Sum_probs=30.8

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHH-----HhccccCeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVD-----AAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~-----~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      +.||.+.+.+..-+++.+.+..++..     ..--.....|+-||++|+|||+.+.
T Consensus        14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~   69 (285)
T 3h4m_A           14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK   69 (285)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence            56677766555555554444433221     1111344569999999999999763

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=89.90  E-value=0.13  Score=44.62  Aligned_cols=46  Identities=35%  Similarity=0.648  Sum_probs=41.6

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ..+++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~  116 (344)
T 3dc4_A           71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTP  116 (344)
T ss_dssp             TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSC
T ss_pred             CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCC
Confidence            4467899999999999999999999999999999999999997643

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=89.88  E-value=0.11  Score=45.38  Aligned_cols=44  Identities=52%  Similarity=0.943  Sum_probs=41.0

Q ss_pred             ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      +++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        83 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~  126 (359)
T 3nwn_A           83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGAT  126 (359)
T ss_dssp             CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCS
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCcc
Confidence            46889999999999999999999999999999999999999864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=89.82  E-value=0.18  Score=41.80  Aligned_cols=21  Identities=29%  Similarity=0.164  Sum_probs=18.5

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ......|+-||++|+|||+..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la   81 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALA   81 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHH
Confidence            566778999999999999976

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=89.66  E-value=0.092  Score=45.20  Aligned_cols=45  Identities=56%  Similarity=0.822  Sum_probs=41.6

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      .+++.++|+....+++.+++++||.+++.+++.++|+++++.|..
T Consensus        55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~   99 (325)
T 1bg2_A           55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKL   99 (325)
T ss_dssp             TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBST
T ss_pred             CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccC
Confidence            467899999999999999999999999999999999999999854

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=89.42  E-value=0.13  Score=44.20  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=26.9

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|.|+.+.+.    +++.+.    +...++.+....|+-||++|+|||+..
T Consensus        20 ~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la   62 (350)
T 1g8p_A           20 VFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV   62 (350)
T ss_dssp             CCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred             CCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence            3566666643    334332    222334444556999999999999876

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=89.30  E-value=0.1  Score=45.68  Aligned_cols=46  Identities=50%  Similarity=0.755  Sum_probs=41.9

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ..+++.++|+....+++.+++++||.+|+.+++.++|+++++.|..
T Consensus        61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~  106 (365)
T 2y65_A           61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVI  106 (365)
T ss_dssp             TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBST
T ss_pred             CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCC
Confidence            3467899999999999999999999999999999999999999854

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=88.94  E-value=0.1  Score=45.35  Aligned_cols=45  Identities=47%  Similarity=0.910  Sum_probs=41.1

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ..++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        55 ~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~   99 (349)
T 1t5c_A           55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSE   99 (349)
T ss_dssp             TSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCC
Confidence            356889999999999999999999999999999999999998853

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=88.82  E-value=0.091  Score=45.83  Aligned_cols=47  Identities=40%  Similarity=0.710  Sum_probs=42.5

Q ss_pred             cccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           100 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       100 ~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ...+++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~  127 (355)
T 3lre_A           81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA  127 (355)
T ss_dssp             CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS
T ss_pred             CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC
Confidence            34567899999999999999999999999999999999999999854

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=88.80  E-value=0.1  Score=45.35  Aligned_cols=49  Identities=12%  Similarity=0.222  Sum_probs=28.9

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHHh----ccccCeeEeeccCcCCCceeEe
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDAA----FEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v----~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .||.+.+.+.--+.+.+.+..|+...-    +.+....|+.||++|+|||+..
T Consensus        82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la  134 (357)
T 3d8b_A           82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG  134 (357)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred             CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence            456666544444444444433322111    2345668999999999999876

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=88.79  E-value=0.084  Score=46.11  Aligned_cols=47  Identities=43%  Similarity=0.756  Sum_probs=42.6

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA  147 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~  147 (279)
                      ..+.+.++|+....+++.+++++||.+|+.+++.++|++++|.|...
T Consensus        65 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~  111 (359)
T 1x88_A           65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS  111 (359)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCC
T ss_pred             ccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCC
Confidence            34678999999999999999999999999999999999999998653

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=88.78  E-value=0.096  Score=45.57  Aligned_cols=46  Identities=46%  Similarity=0.749  Sum_probs=41.9

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ....+.++|+....+++.+++++||.+++.+++.++|+++++.|..
T Consensus        66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~  111 (350)
T 2vvg_A           66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK  111 (350)
T ss_dssp             TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCS
T ss_pred             CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCC
Confidence            3467899999999999999999999999999999999999998854

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=88.62  E-value=0.11  Score=45.45  Aligned_cols=45  Identities=42%  Similarity=0.763  Sum_probs=41.6

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ..++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~  123 (372)
T 3b6u_A           79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIR  123 (372)
T ss_dssp             TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCT
T ss_pred             cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCC
Confidence            467899999999999999999999999999999999999999854

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=88.42  E-value=0.15  Score=40.24  Aligned_cols=21  Identities=29%  Similarity=0.320  Sum_probs=16.8

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .+....++.+|++|+|||+.+
T Consensus        35 ~~~~~~~ll~G~~G~GKT~l~   55 (226)
T 2chg_A           35 RKNIPHLLFSGPPGTGKTATA   55 (226)
T ss_dssp             TTCCCCEEEECSTTSSHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHH
Confidence            344445999999999999986

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=88.37  E-value=0.13  Score=43.11  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=29.7

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHH-Hhccc---cCeeEeeccCcCCCceeEe
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVD-AAFEG---YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~-~v~~G---~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|+.+.+.+.--+.+.+.+..|+.. ..+.|   ....|+-||++|+|||+.+
T Consensus        19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la   71 (297)
T 3b9p_A           19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA   71 (297)
T ss_dssp             CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred             CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence            4566666554444454444444331 12222   3568999999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=88.30  E-value=0.14  Score=42.76  Aligned_cols=17  Identities=35%  Similarity=0.427  Sum_probs=14.9

Q ss_pred             eEeeccCcCCCceeEec
Q psy37            54 CVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        54 ~v~~yG~tgSGKT~Tl~   70 (279)
                      .|+.||++|+|||+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~   91 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLAR   91 (278)
T ss_dssp             EEEEECCTTSSHHHHHH
T ss_pred             eEEEECCCcChHHHHHH
Confidence            38999999999999863

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=88.29  E-value=0.11  Score=45.85  Aligned_cols=45  Identities=40%  Similarity=0.646  Sum_probs=41.4

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ..++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~  120 (388)
T 3bfn_A           76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSP  120 (388)
T ss_dssp             TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCS
T ss_pred             CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCc
Confidence            467899999999999999999999999999999999999998853

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=88.29  E-value=0.15  Score=43.79  Aligned_cols=49  Identities=14%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHH-Hhcccc---CeeEeeccCcCCCceeEe
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVD-AAFEGY---NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~-~v~~G~---n~~v~~yG~tgSGKT~Tl   69 (279)
                      .||.+.+.+.--+.+-+.+..|+-. .++.|.   ...|+.||++|+|||+..
T Consensus        10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la   62 (322)
T 1xwi_A           10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA   62 (322)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence            4566665555445555444444332 233442   247999999999999876

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=88.27  E-value=0.1  Score=45.25  Aligned_cols=39  Identities=28%  Similarity=0.413  Sum_probs=25.7

Q ss_pred             CHHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEec
Q psy37            31 SQEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        31 ~q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+++..+.+. ..+..++ .+...+++.||++|+|||+.+.
T Consensus        23 gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~~   62 (387)
T 2v1u_A           23 HREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVAR   62 (387)
T ss_dssp             TCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence            4555555444 3333443 3556689999999999999873

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=88.25  E-value=0.14  Score=45.62  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=23.4

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ++++.++..-...|+..|++|||||.+|.-
T Consensus       157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~a  186 (418)
T 1p9r_A          157 DNFRRLIKRPHGIILVTGPTGSGKSTTLYA  186 (418)
T ss_dssp             HHHHHHHTSSSEEEEEECSTTSCHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence            456666655667899999999999998853

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=88.23  E-value=0.097  Score=46.47  Aligned_cols=45  Identities=51%  Similarity=0.668  Sum_probs=41.7

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS  145 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~  145 (279)
                      ..+++.++|+..+.+++.+++++||.+|+.+++.++|++++|.|.
T Consensus       131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~  175 (410)
T 1v8k_A          131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD  175 (410)
T ss_dssp             TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCB
T ss_pred             cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecC
Confidence            446789999999999999999999999999999999999999985

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=88.19  E-value=0.11  Score=45.85  Aligned_cols=46  Identities=50%  Similarity=0.639  Sum_probs=40.3

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ..+++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus       111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~  156 (387)
T 2heh_A          111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL  156 (387)
T ss_dssp             TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC---
T ss_pred             cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCC
Confidence            4467899999999999999999999999999999999999999853

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.10  E-value=0.22  Score=44.60  Aligned_cols=50  Identities=20%  Similarity=0.332  Sum_probs=35.8

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--cc--CeeEeeccCcCCCceeEe
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GY--NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~--n~~v~~yG~tgSGKT~Tl   69 (279)
                      -+||.|-+.+.--+++.+.+..|+... .+.  |.  .-.|+.||+.|+|||.+.
T Consensus       178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA  232 (434)
T 4b4t_M          178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA  232 (434)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred             CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence            357777777777777777777776532 222  33  347999999999999765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=88.05  E-value=0.19  Score=43.50  Aligned_cols=39  Identities=36%  Similarity=0.376  Sum_probs=26.5

Q ss_pred             CHHHHHHHhHHHHHHHhccccCe--eEeeccCcCCCceeEec
Q psy37            31 SQEQVFNDLGMDVVDAAFEGYNA--CVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        31 ~q~~vy~~~~~~lv~~v~~G~n~--~v~~yG~tgSGKT~Tl~   70 (279)
                      .|+.+-+... .+++.+-.|...  .++-||++|+|||+...
T Consensus        48 G~~~~~~~l~-~l~~~~~~~~~~~~~vLl~GppGtGKT~la~   88 (368)
T 3uk6_A           48 GQLAARRAAG-VVLEMIREGKIAGRAVLIAGQPGTGKTAIAM   88 (368)
T ss_dssp             SCHHHHHHHH-HHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred             ChHHHHHHHH-HHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence            3445444332 455555566654  89999999999999764

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=88.04  E-value=0.11  Score=45.31  Aligned_cols=45  Identities=47%  Similarity=0.775  Sum_probs=41.3

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ...+.++|+....+++.+++++||.+|+.+++.++|+++++.|..
T Consensus        58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~  102 (355)
T 1goj_A           58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTS  102 (355)
T ss_dssp             TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSC
T ss_pred             CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCC
Confidence            367899999999999999999999999999999999999999853

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=87.99  E-value=0.17  Score=43.26  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHH-hcccc---CeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFEGY---NACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~G~---n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ..||.+.+.+.--+.+.+.+..|+... .+.+.   ...|+.||++|+|||+...
T Consensus        15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~   69 (322)
T 3eie_A           15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK   69 (322)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred             CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence            456777665555555555554443322 22222   3469999999999998763

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=87.92  E-value=0.11  Score=45.70  Aligned_cols=46  Identities=41%  Similarity=0.725  Sum_probs=42.1

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA  147 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~  147 (279)
                      ...+.++|+....+++.+++++||.+|+.+++.++|++++|.|...
T Consensus        78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~  123 (373)
T 2wbe_C           78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNET  123 (373)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCS
T ss_pred             ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCcc
Confidence            3578899999999999999999999999999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=87.88  E-value=0.18  Score=41.25  Aligned_cols=20  Identities=25%  Similarity=0.345  Sum_probs=16.7

Q ss_pred             cCeeEeeccCcCCCceeEec
Q psy37            51 YNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        51 ~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ....|+-||++|+|||+...
T Consensus        38 ~~~~vll~G~~GtGKT~la~   57 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAK   57 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHH
Confidence            45579999999999999763

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=87.76  E-value=0.12  Score=44.79  Aligned_cols=46  Identities=52%  Similarity=0.762  Sum_probs=40.8

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ...++.++|+....+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~  105 (344)
T 4a14_A           60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEAS  105 (344)
T ss_dssp             TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--
T ss_pred             cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccc
Confidence            3467899999999999999999999999999999999999998753

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=87.29  E-value=0.25  Score=39.39  Aligned_cols=24  Identities=42%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeE
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      ++..+++|.|  ++..++||||||.+
T Consensus        44 ~i~~~~~~~~--~lv~~pTGsGKT~~   67 (224)
T 1qde_A           44 AIMPIIEGHD--VLAQAQSGTGKTGT   67 (224)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             HHHHHhcCCC--EEEECCCCCcHHHH
Confidence            4556677866  78889999999987

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=87.18  E-value=0.38  Score=41.68  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=25.7

Q ss_pred             CHHHHHHHhHHHHHHHhccccC-e--eEeeccCcCCCceeEec
Q psy37            31 SQEQVFNDLGMDVVDAAFEGYN-A--CVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        31 ~q~~vy~~~~~~lv~~v~~G~n-~--~v~~yG~tgSGKT~Tl~   70 (279)
                      .+++..+.+. ..+...+.|.. .  +++.+|++|+|||.++.
T Consensus        21 gr~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~   62 (389)
T 1fnn_A           21 HREQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR   62 (389)
T ss_dssp             TCHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred             ChHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence            4445444444 34555554433 4  79999999999999873

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=87.04  E-value=0.26  Score=44.26  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=27.4

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      |.||.... ..++...+..+ ..+++.  .|....++-||++|+|||+.+.
T Consensus       102 ~tfd~fv~-g~~n~~a~~~~-~~~a~~--~~~~~~lll~Gp~G~GKTtLa~  148 (440)
T 2z4s_A          102 YTFENFVV-GPGNSFAYHAA-LEVAKH--PGRYNPLFIYGGVGLGKTHLLQ  148 (440)
T ss_dssp             CSGGGCCC-CTTTHHHHHHH-HHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred             CChhhcCC-CCchHHHHHHH-HHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence            46776442 23344343332 233332  2324578999999999999874

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=86.94  E-value=0.31  Score=38.22  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=18.5

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ++..+++|.|  ++..++||||||.+.
T Consensus        33 ~i~~~~~~~~--~lv~apTGsGKT~~~   57 (206)
T 1vec_A           33 SIPIALSGRD--ILARAKNGTGKSGAY   57 (206)
T ss_dssp             HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred             HHHHHccCCC--EEEECCCCCchHHHH
Confidence            4555567765  677889999999654

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=86.67  E-value=0.29  Score=38.43  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=18.4

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeE
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      ++..+++|.+  ++..++||||||.+
T Consensus        31 ~i~~~~~~~~--~li~~~TGsGKT~~   54 (207)
T 2gxq_A           31 ALPLALEGKD--LIGQARTGTGKTLA   54 (207)
T ss_dssp             HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHcCCCC--EEEECCCCChHHHH
Confidence            4455677766  67778999999986

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=86.35  E-value=0.18  Score=44.00  Aligned_cols=28  Identities=32%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEec
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+.++..--...|+..|++|||||.+|.
T Consensus       114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~  141 (356)
T 3jvv_A          114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA  141 (356)
T ss_dssp             HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred             HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence            3444444444588999999999999884

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=86.32  E-value=0.22  Score=40.39  Aligned_cols=26  Identities=38%  Similarity=0.650  Sum_probs=19.9

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..+..+++|.|  ++..++||||||.+.
T Consensus        59 ~ai~~i~~~~~--~li~apTGsGKT~~~   84 (237)
T 3bor_A           59 RAIIPCIKGYD--VIAQAQSGTGKTATF   84 (237)
T ss_dssp             HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred             HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence            34556677866  778899999999763

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=86.20  E-value=0.32  Score=40.55  Aligned_cols=28  Identities=18%  Similarity=0.201  Sum_probs=22.9

Q ss_pred             HHHHHhcccc---CeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEGY---NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G~---n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..+..+++|.   .-||+.||+.|+|||+..
T Consensus        91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a  121 (267)
T 1u0j_A           91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA  121 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence            4577788887   448999999999999865

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=85.93  E-value=0.25  Score=40.83  Aligned_cols=25  Identities=36%  Similarity=0.616  Sum_probs=19.5

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeE
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      .++..++.|.|  ++..++||||||.+
T Consensus        83 ~~i~~~~~~~~--~lv~a~TGsGKT~~  107 (262)
T 3ly5_A           83 KSIRPLLEGRD--LLAAAKTGSGKTLA  107 (262)
T ss_dssp             HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred             HHHHHHhCCCc--EEEEccCCCCchHH
Confidence            45556677866  78889999999976

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=85.81  E-value=0.33  Score=39.35  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeE
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      ++..+++|.+  ++..++||||||.+
T Consensus        59 ~i~~~~~~~~--~l~~a~TGsGKT~~   82 (245)
T 3dkp_A           59 AIPVMLHGRE--LLASAPTGSGKTLA   82 (245)
T ss_dssp             HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCCcHHHH
Confidence            4556678877  68889999999986

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=85.20  E-value=0.34  Score=41.44  Aligned_cols=42  Identities=21%  Similarity=0.229  Sum_probs=26.8

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      -.|+.+.+.+.--+        .+...+-.|....++-||++|+|||+++
T Consensus        34 ~~~~~i~g~~~~~~--------~l~~~l~~~~~~~~ll~G~~G~GKT~la   75 (353)
T 1sxj_D           34 KNLDEVTAQDHAVT--------VLKKTLKSANLPHMLFYGPPGTGKTSTI   75 (353)
T ss_dssp             SSTTTCCSCCTTHH--------HHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred             CCHHHhhCCHHHHH--------HHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence            34677665544332        2333344564445999999999999876

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=84.64  E-value=0.19  Score=41.19  Aligned_cols=18  Identities=33%  Similarity=0.505  Sum_probs=15.6

Q ss_pred             CeeEeeccCcCCCceeEe
Q psy37            52 NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl   69 (279)
                      ...|+-||++|+|||+.+
T Consensus        45 ~~~vll~G~~GtGKT~la   62 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLA   62 (257)
T ss_dssp             CCEEEEECCTTSCHHHHH
T ss_pred             CCeEEEECcCCCCHHHHH
Confidence            446999999999999875

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=84.59  E-value=0.27  Score=39.38  Aligned_cols=28  Identities=21%  Similarity=0.506  Sum_probs=20.4

Q ss_pred             HHHHhccccC--eeEeeccCcCCCceeEec
Q psy37            43 VVDAAFEGYN--ACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        43 lv~~v~~G~n--~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+..++.|..  -+++.||+.|+|||+...
T Consensus        47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~   76 (212)
T 1tue_A           47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGM   76 (212)
T ss_dssp             HHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred             HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence            3444555643  479999999999998753

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=84.58  E-value=0.31  Score=42.35  Aligned_cols=50  Identities=18%  Similarity=0.331  Sum_probs=31.3

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHH-hccc---cCeeEeeccCcCCCceeEe
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFEG---YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~G---~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..|+.+.+.+.--+.+.+.+..|+-.. ++.+   ....|+.||++|+|||+..
T Consensus        48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la  101 (355)
T 2qp9_X           48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA  101 (355)
T ss_dssp             CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence            457777766665556655555443222 2222   1246899999999999865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=84.50  E-value=0.46  Score=39.93  Aligned_cols=20  Identities=25%  Similarity=0.223  Sum_probs=16.7

Q ss_pred             ccCeeEeeccCcCCCceeEe
Q psy37            50 GYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        50 G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .....|+-||++|+|||+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la   84 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVA   84 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHH
Confidence            34447999999999999987

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=84.49  E-value=0.25  Score=43.43  Aligned_cols=51  Identities=18%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc---ccCeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE---GYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~---G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ..||.+.+.+.--+.+.+.+..|+... ++.   .-...|+-||++|+|||+...
T Consensus       112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~  166 (389)
T 3vfd_A          112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAK  166 (389)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHH
T ss_pred             CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHH
Confidence            356766655444444444443333311 112   224689999999999998763

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=84.48  E-value=0.31  Score=41.85  Aligned_cols=42  Identities=29%  Similarity=0.423  Sum_probs=26.0

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEec
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .|+.++    .|+++.+.+    -..+-.|.-..++.||+.|+|||+++.
T Consensus        23 ~~~~~~----g~~~~~~~L----~~~i~~g~~~~~ll~Gp~G~GKTtla~   64 (340)
T 1sxj_C           23 TLDEVY----GQNEVITTV----RKFVDEGKLPHLLFYGPPGTGKTSTIV   64 (340)
T ss_dssp             SGGGCC----SCHHHHHHH----HHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred             cHHHhc----CcHHHHHHH----HHHHhcCCCceEEEECCCCCCHHHHHH
Confidence            355555    345554432    233335644448899999999999873

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=84.37  E-value=0.17  Score=42.32  Aligned_cols=49  Identities=20%  Similarity=0.253  Sum_probs=26.3

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHH-hccccC----eeEeeccCcCCCceeEe
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFEGYN----ACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~G~n----~~v~~yG~tgSGKT~Tl   69 (279)
                      .||.|-+.+.-.+++.+.+..|+-.. ++++++    ..|+.||+.|+|||+.+
T Consensus         8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa   61 (274)
T 2x8a_A            8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA   61 (274)
T ss_dssp             ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence            44555544444555555555444321 222222    22899999999999876

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=84.33  E-value=0.43  Score=38.43  Aligned_cols=26  Identities=35%  Similarity=0.631  Sum_probs=19.2

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .++..+++|.+  ++..++||||||.+.
T Consensus        54 ~~i~~~~~~~~--~li~a~TGsGKT~~~   79 (236)
T 2pl3_A           54 QTIGLALQGKD--VLGAAKTGSGKTLAF   79 (236)
T ss_dssp             HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred             HHHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence            34556677876  667789999999863

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=84.28  E-value=0.26  Score=40.90  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=16.6

Q ss_pred             cCeeEeeccCcCCCceeEec
Q psy37            51 YNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        51 ~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      -...+...|++|||||.+|.
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~   43 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIA   43 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHH
Confidence            44578889999999999873

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=83.99  E-value=0.35  Score=43.54  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=27.6

Q ss_pred             CHHHHHHHhHHHHHHHhccccC--eeEeeccCcCCCceeEec
Q psy37            31 SQEQVFNDLGMDVVDAAFEGYN--ACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        31 ~q~~vy~~~~~~lv~~v~~G~n--~~v~~yG~tgSGKT~Tl~   70 (279)
                      .|+++-+.+. .+++.+..|..  ..|+.||++|+|||+...
T Consensus        41 G~~~~~~~l~-~~~~~~~~~~~~~~~iLl~GppGtGKT~la~   81 (456)
T 2c9o_A           41 GQENAREACG-VIVELIKSKKMAGRAVLLAGPPGTGKTALAL   81 (456)
T ss_dssp             SCHHHHHHHH-HHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence            5666655543 56666666654  378899999999998763

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=83.78  E-value=0.24  Score=43.38  Aligned_cols=44  Identities=57%  Similarity=1.008  Sum_probs=39.4

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      .+++.++|+. ..+++.+++++||.+|+.+++.++|++++|.|..
T Consensus        58 ~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~  101 (369)
T 3cob_A           58 NATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGAD  101 (369)
T ss_dssp             TCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCS
T ss_pred             CCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCC
Confidence            4678899998 5789999999999999999999999999998863

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=83.54  E-value=0.43  Score=35.38  Aligned_cols=20  Identities=25%  Similarity=0.203  Sum_probs=16.2

Q ss_pred             cCeeEeeccCcCCCceeEec
Q psy37            51 YNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        51 ~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+..|+-+|++|+|||+...
T Consensus        26 ~~~~vll~G~~GtGKt~lA~   45 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVAR   45 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHG
T ss_pred             CCCcEEEECCCCccHHHHHH
Confidence            34568889999999998763

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=83.50  E-value=0.49  Score=37.56  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=19.4

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..+..+++|.|  ++..++||||||.+.
T Consensus        43 ~~i~~~~~~~~--~li~~~TGsGKT~~~   68 (220)
T 1t6n_A           43 ECIPQAILGMD--VLCQAKSGMGKTAVF   68 (220)
T ss_dssp             HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred             HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence            34556677876  667789999999764

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=83.42  E-value=0.49  Score=37.84  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=18.6

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .+..+++|.|  ++..++||||||.+.
T Consensus        50 ~i~~~~~~~~--~l~~apTGsGKT~~~   74 (228)
T 3iuy_A           50 AWPIILQGID--LIVVAQTGTGKTLSY   74 (228)
T ss_dssp             HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCChHHHHH
Confidence            4455667876  467789999999763

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19

Probab=83.39  E-value=0.5  Score=38.53  Aligned_cols=25  Identities=40%  Similarity=0.561  Sum_probs=18.5

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ++..+++|.|  ++..++||||||.+.
T Consensus        53 ~i~~i~~~~~--~l~~a~TGsGKT~~~   77 (253)
T 1wrb_A           53 AIPAILEHRD--IMACAQTGSGKTAAF   77 (253)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCChHHHHH
Confidence            4555677876  566789999999763

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=83.32  E-value=0.27  Score=43.18  Aligned_cols=44  Identities=52%  Similarity=0.964  Sum_probs=39.1

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      .+.+.++|+.. ..++.+++++||.+|+.+++.++|++++|.|..
T Consensus        94 ~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~  137 (376)
T 2rep_A           94 GSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGP  137 (376)
T ss_dssp             TCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCS
T ss_pred             cccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCC
Confidence            46788899885 478899999999999999999999999999864

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=83.01  E-value=0.26  Score=42.50  Aligned_cols=45  Identities=49%  Similarity=0.953  Sum_probs=39.5

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ..+++.++|+.. .+++.+++++||.+++.+++.++|++++|.|..
T Consensus        58 ~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~  102 (330)
T 2h58_A           58 PQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTA  102 (330)
T ss_dssp             TTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCS
T ss_pred             CCCCcHhHHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCC
Confidence            346788999874 789999999999999999999999999999853

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=82.80  E-value=0.5  Score=43.03  Aligned_cols=49  Identities=18%  Similarity=0.199  Sum_probs=30.1

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHH-----HHhccccCeeEeeccCcCCCceeEe
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVV-----DAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv-----~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|+.+.+.+..-+++.+.+..++-     ..+--.....|+-||++|+|||+..
T Consensus       202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA  255 (489)
T 3hu3_A          202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA  255 (489)
T ss_dssp             CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred             CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence            456666555555556555544321     1111234567999999999999876

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=82.71  E-value=0.55  Score=39.66  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=21.0

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeE
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      ..+..++.|..-.+++.++||||||.+
T Consensus       121 ~ai~~il~~~~~~~l~~a~TGsGKT~a  147 (300)
T 3fmo_B          121 NALPLMLAEPPQNLIAQSQSGTGKTAA  147 (300)
T ss_dssp             HHHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred             HHHHHHHcCCCCeEEEECCCCCCccHH
Confidence            356667887555688899999999976

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=82.63  E-value=0.28  Score=42.61  Aligned_cols=42  Identities=50%  Similarity=1.010  Sum_probs=37.4

Q ss_pred             ccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37           103 ASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS  145 (279)
Q Consensus       103 ~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~  145 (279)
                      ..+.++|+.. .+++.+++++||.+|+.+++.++|++++|.|.
T Consensus        64 ~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~  105 (347)
T 1f9v_A           64 DTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP  105 (347)
T ss_dssp             CCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHST
T ss_pred             CCHHHHHHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCC
Confidence            5678899875 47999999999999999999999999999874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=82.55  E-value=0.29  Score=36.46  Aligned_cols=20  Identities=25%  Similarity=0.536  Sum_probs=16.7

Q ss_pred             ccCeeEeeccCcCCCceeEe
Q psy37            50 GYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        50 G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..+..|+-+|++|+|||+..
T Consensus        22 ~~~~~vll~G~~GtGKt~lA   41 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGA   41 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHH
Confidence            45567899999999999875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=82.52  E-value=0.34  Score=41.82  Aligned_cols=21  Identities=38%  Similarity=0.588  Sum_probs=17.4

Q ss_pred             ccCeeEeeccCcCCCceeEec
Q psy37            50 GYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        50 G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      +....++.||++|+|||..+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~   63 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVK   63 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHH
Confidence            445689999999999999863

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=82.49  E-value=0.32  Score=43.65  Aligned_cols=50  Identities=14%  Similarity=0.242  Sum_probs=28.7

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHH-Hhccc---cCeeEeeccCcCCCceeEe
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVD-AAFEG---YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~-~v~~G---~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..||.+.+.+.--+.+.+.+..|+-. .++.|   ....|+.||++|+|||+..
T Consensus       131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA  184 (444)
T 2zan_A          131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA  184 (444)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence            45677665443333333333333221 22333   2357999999999999876

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=82.32  E-value=0.57  Score=38.26  Aligned_cols=25  Identities=32%  Similarity=0.558  Sum_probs=18.5

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ++..+++|.+  ++..++||||||.+.
T Consensus        73 ~i~~i~~~~~--~lv~a~TGsGKT~~~   97 (249)
T 3ber_A           73 AIPLALQGRD--IIGLAETGSGKTGAF   97 (249)
T ss_dssp             HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred             HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence            4555677866  566679999999763

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.20  E-value=0.57  Score=41.44  Aligned_cols=49  Identities=24%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--cc--CeeEeeccCcCCCceeEe
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GY--NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~--n~~v~~yG~tgSGKT~Tl   69 (279)
                      +||.|-+-+.--+++-+.+..|+... .+.  |.  .-.|+.||+.|+|||...
T Consensus       146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA  199 (405)
T 4b4t_J          146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA  199 (405)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence            46777776666777777777776543 332  33  346999999999999865

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.86  E-value=0.3  Score=43.63  Aligned_cols=49  Identities=22%  Similarity=0.461  Sum_probs=32.1

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--ccC--eeEeeccCcCCCceeEe
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GYN--ACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~n--~~v~~yG~tgSGKT~Tl   69 (279)
                      +||.|-+-+.--+++.+.+..|+... .+.  |..  -.|+.||+.|+|||...
T Consensus       170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la  223 (428)
T 4b4t_K          170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV  223 (428)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred             CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence            46666666666666666666555432 222  332  35999999999999865

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=81.84  E-value=0.67  Score=40.41  Aligned_cols=26  Identities=38%  Similarity=0.648  Sum_probs=20.8

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..+..+++|.+  ++..++||||||.+.
T Consensus        69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~   94 (414)
T 3eiq_A           69 RAILPCIKGYD--VIAQAQSGTGKTATF   94 (414)
T ss_dssp             HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred             HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence            45667778887  688999999999863

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=81.73  E-value=0.63  Score=37.34  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=18.0

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeE
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      .+..+++|.|  ++..++||||||.+
T Consensus        54 ~i~~~~~~~~--~l~~a~TGsGKT~~   77 (230)
T 2oxc_A           54 AIPLGRCGLD--LIVQAKSGTGKTCV   77 (230)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCCcHHHH
Confidence            3445667876  56678999999976

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=81.45  E-value=0.39  Score=41.62  Aligned_cols=37  Identities=24%  Similarity=0.353  Sum_probs=24.7

Q ss_pred             HHHHHHHhHHHHHHHhcc-ccCeeEeeccCcCCCceeEe
Q psy37            32 QEQVFNDLGMDVVDAAFE-GYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        32 q~~vy~~~~~~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +++..+.+. ..+..++. +...+|+.||++|+|||..+
T Consensus        25 r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la   62 (384)
T 2qby_B           25 REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS   62 (384)
T ss_dssp             CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred             hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            444444443 34445444 44558999999999999976

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=81.26  E-value=0.72  Score=41.46  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=22.5

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeE
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      ..+..++.|.+..++..|+||||||..
T Consensus       121 ~ai~~il~~~~~~~l~~a~TGsGKT~~  147 (479)
T 3fmp_B          121 NALPLMLAEPPQNLIAQSQSGTGKTAA  147 (479)
T ss_dssp             HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred             HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence            456677888777899999999999976

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=81.22  E-value=0.4  Score=37.71  Aligned_cols=24  Identities=42%  Similarity=0.494  Sum_probs=17.7

Q ss_pred             HHHhccccCeeEeeccCcCCCceeEe
Q psy37            44 VDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        44 v~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +..+++|.+  ++..++||+|||.+.
T Consensus        42 i~~~~~~~~--~li~~~tGsGKT~~~   65 (216)
T 3b6e_A           42 AQPALEGKN--IIICLPTGSGKTRVA   65 (216)
T ss_dssp             HHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred             HHHHhcCCC--EEEEcCCCCCHHHHH
Confidence            344456654  677899999999875

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=81.21  E-value=0.31  Score=43.21  Aligned_cols=45  Identities=49%  Similarity=0.932  Sum_probs=38.7

Q ss_pred             cccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37           100 PQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS  145 (279)
Q Consensus       100 ~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~  145 (279)
                      ....++.++|.... +++.+++++||.+|+.+++.++|++++|.|.
T Consensus       117 ~~~~~Q~~Vf~~v~-~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~  161 (403)
T 4etp_A          117 DQQDTNVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP  161 (403)
T ss_dssp             CTTCCHHHHHHHHH-HHHHHHHTTCCEEEEEESCTTSSHHHHHHCT
T ss_pred             CCCCchHHHHHHHH-HHHHHHhCCcceEEEEECCCCCCCceEeCCC
Confidence            34467888998754 7899999999999999999999999999864

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=80.98  E-value=0.34  Score=42.10  Aligned_cols=43  Identities=44%  Similarity=1.002  Sum_probs=37.8

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS  145 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~  145 (279)
                      ...+.++|+.. .+++.+++++||.+|+.+++.++|++++|.|.
T Consensus        64 ~~~Q~~vf~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~  106 (349)
T 3t0q_A           64 SHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA  106 (349)
T ss_dssp             TCCHHHHHHHH-HHHHHGGGTTCEEEEEEECSTTSSHHHHHHST
T ss_pred             CccHHHHHHHH-HHHHHHHHCCcceeEEEeCCCCCCCceEeCCC
Confidence            45678899875 57899999999999999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=80.77  E-value=1.5  Score=36.80  Aligned_cols=31  Identities=29%  Similarity=0.283  Sum_probs=20.9

Q ss_pred             hHHHHHHHhccc-----cCeeEeeccCcCCCceeEe
Q psy37            39 LGMDVVDAAFEG-----YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        39 ~~~~lv~~v~~G-----~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +...++..++.|     ....|+..|++|||||...
T Consensus        15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla   50 (287)
T 1gvn_B           15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR   50 (287)
T ss_dssp             HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred             HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence            333455555543     2457899999999999864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.76  E-value=0.76  Score=41.15  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=34.5

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--cc--CeeEeeccCcCCCceeEe
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GY--NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~--n~~v~~yG~tgSGKT~Tl   69 (279)
                      .+||.|-+-+.--+++-+.+..|+... .+.  |.  .-.|+.||+.|+|||.+.
T Consensus       178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA  232 (437)
T 4b4t_L          178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA  232 (437)
T ss_dssp             SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred             CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence            456777776666667777776665533 332  33  347999999999999865

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=80.72  E-value=0.31  Score=43.28  Aligned_cols=44  Identities=50%  Similarity=0.963  Sum_probs=38.5

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS  145 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~  145 (279)
                      ..+.+.++|... .+++.+++++||.+|+.+++.++|++++|.|.
T Consensus       116 ~~~~Q~~Vf~~v-~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~  159 (412)
T 3u06_A          116 PLSSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKTYTMDGV  159 (412)
T ss_dssp             TTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTEE
T ss_pred             CCCCHHHHHHHH-HHHHHHHHCCCceEEEEecCCCCCCeeEecCC
Confidence            346788899854 58999999999999999999999999999874

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=80.59  E-value=0.45  Score=37.84  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=17.7

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeE
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      ++..+++|.|  ++..++||||||.+
T Consensus        34 ~i~~~~~~~~--~lv~a~TGsGKT~~   57 (219)
T 1q0u_A           34 IIPGALRGES--MVGQSQTGTGKTHA   57 (219)
T ss_dssp             HHHHHHHTCC--EEEECCSSHHHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCChHHHH
Confidence            3455566765  56778999999986

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=80.46  E-value=0.59  Score=37.87  Aligned_cols=25  Identities=36%  Similarity=0.509  Sum_probs=18.0

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ++..+++|.|  ++..++||||||.+.
T Consensus        59 ~i~~~~~g~~--~l~~apTGsGKT~~~   83 (242)
T 3fe2_A           59 GWPVALSGLD--MVGVAQTGSGKTLSY   83 (242)
T ss_dssp             HHHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred             HHHHHhCCCC--EEEECCCcCHHHHHH
Confidence            3455567866  556679999999873

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=80.37  E-value=0.91  Score=39.61  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             HHhccc---cCeeEee--ccCcCCCceeEec
Q psy37            45 DAAFEG---YNACVFA--YGQTGSGKTFTMM   70 (279)
Q Consensus        45 ~~v~~G---~n~~v~~--yG~tgSGKT~Tl~   70 (279)
                      ..+..|   ....++.  ||+.|+|||..+.
T Consensus        40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~   70 (412)
T 1w5s_A           40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK   70 (412)
T ss_dssp             HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred             HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence            455555   5567888  9999999999863

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=80.35  E-value=0.53  Score=39.69  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=22.9

Q ss_pred             CHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            31 SQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        31 ~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|+++.+.+. ..+   -.|....++-||+.|+|||++.
T Consensus        29 g~~~~~~~l~-~~l---~~~~~~~~ll~G~~G~GKT~la   63 (327)
T 1iqp_A           29 GQEHIVKRLK-HYV---KTGSMPHLLFAGPPGVGKTTAA   63 (327)
T ss_dssp             SCHHHHHHHH-HHH---HHTCCCEEEEESCTTSSHHHHH
T ss_pred             CCHHHHHHHH-HHH---HcCCCCeEEEECcCCCCHHHHH
Confidence            4555544433 222   3455445999999999999876

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=80.29  E-value=0.63  Score=37.58  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=17.6

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ++..+.+|.  .++..|+||||||..+
T Consensus        69 ~i~~i~~g~--~~~i~g~TGsGKTt~~   93 (235)
T 3llm_A           69 ILEAISQNS--VVIIRGATGCGKTTQV   93 (235)
T ss_dssp             HHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred             HHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence            344445554  5678899999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	6e-54
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	3e-14
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	2e-50
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	8e-49
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	2e-11
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	1e-47
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	1e-08
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	2e-45
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	3e-43
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	4e-36
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	4e-06
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	5e-06
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	2e-34
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	4e-14
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	4e-14
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	3e-34
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	3e-11
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	5e-11

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score =  176 bits (447), Expect = 6e-54
 Identities = 91/327 (27%), Positives = 136/327 (41%), Gaps = 69/327 (21%)

Query: 5   NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
           +S +A   FTFD  +            Q  +F+      VD    GYN  VFAYGQTG+G
Sbjct: 40  DSKEAQGSFTFDRVFD-------MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAG 92

Query: 65  KTFTMMGSKATTDNS-----------------PDAHKDFTF---------DHSYWSFDPS 98
           K++TMMG+     +                    A+ ++T          +       P 
Sbjct: 93  KSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ 152

Query: 99  SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK---TFTMMGSKARNF----- 150
           +      E+    + +  +   +      V+   + G        T M  ++        
Sbjct: 153 NDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFV 212

Query: 151 ----------GEGKDCVCSIVE------------AGDRLKEGAHINKSLVTLGSVISSLA 188
                     G  K     +V+            +G  L+E   INKSL  LG VI++L 
Sbjct: 213 ITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL- 271

Query: 189 ELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
             +  KS+ +PYRDS LT +L++SLGGNS+T +I   SP+  N +ETLSTLR+  RAK+I
Sbjct: 272 --TDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSI 329

Query: 249 INKPTVNEDPNTRIIRELHDEITKLKA 275
            NK  VN + +     EL   + K K 
Sbjct: 330 KNKAKVNAELS---PAELKQMLAKAKT 353

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score = 69.6 bits (169), Expect = 3e-14
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 60  QTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDA 119
           ++G     T  G    T +S +A   FTFD  +            Q  +F+      VD 
Sbjct: 22  ESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFD-------MSCKQSDIFDFSIKPTVDD 74

Query: 120 AFEGYNACVFAYGQTGSGKTFTMM 143
              GYN  VFAYGQTG+GK++TMM
Sbjct: 75  ILNGYNGTVFAYGQTGAGKSYTMM 98

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (421), Expect = 2e-50
 Identities = 85/293 (29%), Positives = 114/293 (38%), Gaps = 66/293 (22%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
           K + FD  + S         SQEQV+ND    +V    EGYN  +FAYGQT SGKT TM 
Sbjct: 42  KPYAFDRVFQSS-------TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 94

Query: 71  GSKATTDNSP----------------DAHKDFTFDHSY--------------WSFDPSSP 100
           G     +                   D + +F    SY                 + S  
Sbjct: 95  GKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVH 154

Query: 101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS-----------KARN 149
           +  ++           V +  E  +             T     S           K  N
Sbjct: 155 EDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQEN 214

Query: 150 FGEGKDCVCSIV--------------EAGDRLKEGAHINKSLVTLGSVISSLAELSTKKS 195
               +     +                 G  L E  +INKSL  LG+VIS+LAE     S
Sbjct: 215 TQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE----GS 270

Query: 196 TFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
           T++PYRDS +T +L+DSLGGN +T ++   SP+  N SET STL +  RAK I
Sbjct: 271 TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  162 bits (411), Expect = 8e-49
 Identities = 66/293 (22%), Positives = 106/293 (36%), Gaps = 66/293 (22%)

Query: 10  HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMD-VVDAAFEGYNACVFAYGQTGSGKTFT 68
             +F  D     FD +         V+ +     ++D    G     FAYGQTGSGKT+T
Sbjct: 49  RHEFIVDKV---FDDT----VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101

Query: 69  MMGSKATTDNS-----PDAHKDFTFDHSYWSFDPSSPQFASQEQVFND------------ 111
           M+GS+    +        A  D     + +  D +   F S  +++              
Sbjct: 102 MLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMV 161

Query: 112 -------------------------------LGMDVVDAAFEGYNA------CVFAYGQT 134
                                           G+ +        N        +      
Sbjct: 162 AALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK 221

Query: 135 GSGKTFTMMGSKARNFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKK 194
              K  ++      +    +    ++ +      +GA+IN+SL+ L   I ++       
Sbjct: 222 DINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS----D 277

Query: 195 STFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
              IP+RDS LT +L+D   G SK+IMIA ISP      +TL+TLRY++R KN
Sbjct: 278 KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 61.2 bits (147), Expect = 2e-11
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 63  SGKTFTMMGSKATTDNSPDA-HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMD-VVDAA 120
           +  T  +   +   D +      +F  D     FD +         V+ +     ++D  
Sbjct: 28  NNCTLYIDEPRYKVDMTKYIERHEFIVDKV---FDDT----VDNFTVYENTIKPLIIDLY 80

Query: 121 FEGYNACVFAYGQTGSGKTFTMMGSKARNFGE 152
             G     FAYGQTGSGKT+TM+GS+     +
Sbjct: 81  ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSD 112

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  160 bits (406), Expect = 1e-47
 Identities = 71/294 (24%), Positives = 116/294 (39%), Gaps = 63/294 (21%)

Query: 5   NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
            S    + F+FD  +          +SQ  +F  +   ++ +A +GYN C+FAYGQTGSG
Sbjct: 86  KSKMGQQIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSG 137

Query: 65  KTFTMMGSKATTDNSPDAHKD-FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEG 123
           KT+TM G   +    P      F     Y +        A+  +++N++  D++    + 
Sbjct: 138 KTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKD 197

Query: 124 YNACVFAYGQTGSGKTFTMMGS-------------------------------------- 145
               +    +     +     +                                      
Sbjct: 198 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL 257

Query: 146 --KARNFGEGKDCVCSIVEAG----------DRLKEGAHINKSLVTLGSVISSLAELSTK 193
               R+  + +  V SI               R+ E  +IN+SL  L +VI +L +    
Sbjct: 258 ELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQ---- 313

Query: 194 KSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN 247
           K   IPYR+S LT LL  SLGGNSKT+M   +SP    + E++ +LR+A    +
Sbjct: 314 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 367

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.0 bits (126), Expect = 1e-08
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 66  TFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYN 125
           T+T          S DA          +SFD      +SQ  +F  +   ++ +A +GYN
Sbjct: 67  TWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVS-PLIQSALDGYN 125

Query: 126 ACVFAYGQTGSGKTFTMMGS 145
            C+FAYGQTGSGKT+TM G 
Sbjct: 126 ICIFAYGQTGSGKTYTMDGV 145

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score =  155 bits (391), Expect = 2e-45
 Identities = 83/296 (28%), Positives = 111/296 (37%), Gaps = 70/296 (23%)

Query: 10  HKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM 69
           ++ F FD +   FD +    AS E V+      +V   FEG  A  FAYGQTGSGKT TM
Sbjct: 79  NQAFCFDFA---FDET----ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 131

Query: 70  MGSKATTDNSPDAHKDFTFDHSYWSFDPSSPQFA--------------SQEQVFNDLGMD 115
                 +  S +A K      S   F   +                     +VF+ L   
Sbjct: 132 G--GDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK 189

Query: 116 VVDAAFEGYNACVFAYGQT-------GSGKTFTMMGSKARNFGE---------------- 152
                 E     V   G                 MGS  R  G+                
Sbjct: 190 AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQI 249

Query: 153 ------------------GKDCVCSIVEAGDRLK-EGAHINKSLVTLGSVISSLAELSTK 193
                             G +       A  + + EGA INKSL+ L   I +L +    
Sbjct: 250 LLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ---- 305

Query: 194 KSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI 248
                P+R+S LT +L+DS +G NS+T MIA ISP   +   TL+TLRYA+R K +
Sbjct: 306 NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  148 bits (375), Expect = 3e-43
 Identities = 73/328 (22%), Positives = 115/328 (35%), Gaps = 69/328 (21%)

Query: 5   NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACV--------- 55
              D  K   +D     FD +    A+Q+ VF D    +V +A +GYN C+         
Sbjct: 36  WKDDKAKQHMYDRV---FDGN----ATQDDVFEDTK-YLVQSAVDGYNVCIFAYGQTGSG 87

Query: 56  FAYGQTGSGKT------------------------------FTMMGSKATTDNSPDAHKD 85
             +   G+                                   +          P   K 
Sbjct: 88  KTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKR 147

Query: 86  FTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGS 145
              D    S    S +  +   +     +  +                  S ++  ++  
Sbjct: 148 LKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSV 207

Query: 146 KARNFGEGKDC----------------VCSIVEAGDRLKEGAHINKSLVTLGSVISSLAE 189
              +                       V     AG++LKE   INKSL  LG VIS+L+ 
Sbjct: 208 IIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS 267

Query: 190 LSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII 249
                +  IPYR+  LT L+ DSLGGN+KT+M   ISPA+ N  ET ++L YA+R ++I+
Sbjct: 268 ----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIV 323

Query: 250 NKPTVNEDPNTRIIRELHDEITKLKAML 277
           N P+ N     + +  L   ++  K   
Sbjct: 324 NDPSKNVSS--KEVARLKKLVSYWKEQA 349

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score =  129 bits (325), Expect = 4e-36
 Identities = 38/83 (45%), Positives = 58/83 (69%), Gaps = 1/83 (1%)

Query: 166 RLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAI 225
           RL+E  +INKSL  LG VI +L +  + K   IP+R+S LT+LL+ SL G+SKT+M   I
Sbjct: 258 RLRETQNINKSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNI 316

Query: 226 SPADVNYSETLSTLRYANRAKNI 248
           SP+  + +ETL++LR+A++  + 
Sbjct: 317 SPSSSHINETLNSLRFASKVNST 339

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 73  KATTDNSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYG 132
           + T   +     +F FD     FD       +   VF ++G  +V ++ +GYN C+FAYG
Sbjct: 39  EVTKIQNTAQVHEFKFDK---IFDQQD----TNVDVFKEVG-QLVQSSLDGYNVCIFAYG 90

Query: 133 QTGSGKTFTMM 143
           QTGSGKTFTM+
Sbjct: 91  QTGSGKTFTML 101

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 8/60 (13%)

Query: 11  KDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMM 70
            +F FD     FD       +   VF ++G  +V ++ +GYN C+FAYGQTGSGKTFTM+
Sbjct: 50  HEFKFDKI---FDQQD----TNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTML 101

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score =  125 bits (314), Expect = 2e-34
 Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 8/103 (7%)

Query: 152 EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELST--------KKSTFIPYRDS 203
            G +   S    G RLKEGA+INKSL TLG VIS+LAE+ +        KK+ FIPYRDS
Sbjct: 247 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 306

Query: 204 VLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK 246
           VLTWLL+++LGGNS+T M+AA+SPAD+NY ETLSTLRYA+RAK
Sbjct: 307 VLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score = 69.2 bits (168), Expect = 4e-14
 Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 4   DNSPDAHKDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 62
               +  K F+FD+SYWS   P    +ASQ+QV+ D+G +++  AFEGYN C+FAYGQTG
Sbjct: 38  KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 97

Query: 63  SGKTFTMMGS 72
           +GK++TMMG 
Sbjct: 98  AGKSYTMMGK 107

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score = 69.2 bits (168), Expect = 4e-14
 Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 77  DNSPDAHKDFTFDHSYWSFD-PSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTG 135
               +  K F+FD+SYWS   P    +ASQ+QV+ D+G +++  AFEGYN C+FAYGQTG
Sbjct: 38  KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 97

Query: 136 SGKTFTMMGS 145
           +GK++TMMG 
Sbjct: 98  AGKSYTMMGK 107

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score =  125 bits (313), Expect = 3e-34
 Identities = 49/100 (49%), Positives = 69/100 (69%), Gaps = 4/100 (4%)

Query: 152 EGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKD 211
            G + +        R +E  +IN+SL+TLG VI++L E    ++  +PYR+S LT +L+D
Sbjct: 250 AGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQD 305

Query: 212 SLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK 251
           SLGG ++T +IA ISPA +N  ETLSTL YA+RAKNI+NK
Sbjct: 306 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 3e-11
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 5   NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 64
               + K +TFD  + +          Q  V+  +   ++D    GYN  +FAYGQTG+G
Sbjct: 41  ADKSSRKTYTFDMVFGAS-------TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTG 93

Query: 65  KTFTMMGSKATTDNSPDAH 83
           KTFTM G ++  +      
Sbjct: 94  KTFTMEGERSPNEEYTWEE 112

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 5e-11
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 78  NSPDAHKDFTFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSG 137
               + K +TFD  + +          Q  V+  +   ++D    GYN  +FAYGQTG+G
Sbjct: 41  ADKSSRKTYTFDMVFGAS-------TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTG 93

Query: 138 KTFTMMGSKARNFGEGKDC 156
           KTFTM G ++ N     + 
Sbjct: 94  KTFTMEGERSPNEEYTWEE 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	100.0
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	100.0
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	100.0
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	100.0
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	100.0
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	100.0
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	100.0
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	100.0
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.13
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.84
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.31
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.08
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	92.47
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	92.07
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	91.51
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	91.36
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.18
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	91.14
d1okkd2	207	GTPase domain of the signal recognition particle r	90.79
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	90.21
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	90.2
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	88.56
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	88.46
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.42
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	88.36
d1j8yf2	211	GTPase domain of the signal sequence recognition p	88.3
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	88.16
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	88.12
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	87.58
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.61
d2qy9a2	211	GTPase domain of the signal recognition particle r	86.57
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.39
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	86.26
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	86.16
d1vmaa2	213	GTPase domain of the signal recognition particle r	86.05
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	85.22
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	84.82
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	84.47
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	84.27
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	84.15
d1ls1a2	207	GTPase domain of the signal sequence recognition p	84.08
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	83.79
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	83.66
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	83.59
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	83.56
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	83.33
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	83.26
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	83.1
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	83.08
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	82.98
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	82.66
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	82.33
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.31
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	82.28
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	82.16
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	82.06
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	81.86
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	81.78
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	81.62
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	81.13
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	81.07
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	81.06
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	80.03

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=3.1e-58  Score=407.38  Aligned_cols=238  Identities=35%  Similarity=0.519  Sum_probs=187.9

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+.+ .|+|+++++|+|+||||||||||||||||+|+..++|++|+++.+| |..+..... 
T Consensus        42 ~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G~n~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~l-f~~i~~~~~-  118 (364)
T d1sdma_          42 KQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSEL-FRIMKKDSN-  118 (364)
T ss_dssp             EEEECSEEECTTCCHHHHHHTT-THHHHHHHTTCEEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHH-HHHHHHGGG-
T ss_pred             eEEECCeecCCCCCHHHHHHHH-HHHHHHHhcCCceeeeccccCCCCcccccccCccccchhHHHHHHH-Hhhhhhccc-
Confidence            3578889999999999999975 7999999999999999999999999999999999999999999999 877653321 


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce------------EEEeccccc-----------------
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT------------FTMMGSKAR-----------------  148 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~------------~~~~g~~~~-----------------  148 (279)
                                   ...+.+..+++|+|++.++||+.+.....            ..+.|....                 
T Consensus       119 -------------~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~  185 (364)
T d1sdma_         119 -------------KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSE  185 (364)
T ss_dssp             -------------TEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHH
T ss_pred             -------------cccceEEEEEEEEeccccccccCcccccccccceeecccCccccccceeeeeCCHHHHHHHhhccce
Confidence                         12255666999999999999997544321            111111111                 


Q ss_pred             -----------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37           149 -----------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL  187 (279)
Q Consensus       149 -----------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l  187 (279)
                                                               ...+|+|+.......|.+++|+..||+||++|++||.+|
T Consensus       186 ~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL  265 (364)
T d1sdma_         186 QRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISAL  265 (364)
T ss_dssp             HHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSCCCC---------CCCTTCHHHHHHHHHHHHH
T ss_pred             eeccccccccccccccceEEEEEEEEeccCcceeeeEEEEeechhhccccccccccCceeeeccccccchhhHHHHHHHH
Confidence                                                     111455655555677889999999999999999999999


Q ss_pred             HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccHHHHHHHH
Q psy37           188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNTRIIRELH  267 (279)
Q Consensus       188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~~~~~~l~  267 (279)
                      ++    +..|||||+||||++|+|+|||+++|+||+||||+..+++||++||+||+++++|+|.|++|...  ..+.+|+
T Consensus       266 ~~----~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n~~~--~~~~~l~  339 (364)
T d1sdma_         266 SS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLK  339 (364)
T ss_dssp             HH----TCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCCEEC--HHHHHHH
T ss_pred             Hc----CCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCcccCCH--HHHHHHH
Confidence            95    67799999999999999999999999999999999999999999999999999999999998654  3466778


Q ss_pred             HHHHHHHHHh
Q psy37           268 DEITKLKAML  277 (279)
Q Consensus       268 ~~~~~Lk~~l  277 (279)
                      +++..|++++
T Consensus       340 ~~i~~l~~~~  349 (364)
T d1sdma_         340 KLVSYWKEQA  349 (364)
T ss_dssp             TTTTCC----
T ss_pred             HHHHHHHHHH
Confidence            8877777765

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=1.4e-56  Score=395.98  Aligned_cols=224  Identities=36%  Similarity=0.475  Sum_probs=185.1

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCC----CCCCCCCCccccceecccccc
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK----ATTDNSPDAHKDFTFDHSYWS   94 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~----~~~G~~~~~~~~l~f~~~~~~   94 (279)
                      .|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+.    ..+|++|+++.++ |......
T Consensus        47 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYG~tgSGKT~Tm~G~~~~~~~~~Giipr~l~~l-~~~~~~~  125 (354)
T d1goja_          47 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQI-FTSILSS  125 (354)
T ss_dssp             EEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHH-HHHHHTS
T ss_pred             eEECCeEcCCCCCHHHHHHHHHHHHHHHhhccCceeEEecccCCCCcceeeecccccCcccceecchhHHHH-hhhhccc
Confidence            4889999999999999999999999999999999999999999999999999953    4579999999999 8765432


Q ss_pred             cCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce---------EEEeccccc-----------------
Q psy37            95 FDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT---------FTMMGSKAR-----------------  148 (279)
Q Consensus        95 ~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~---------~~~~g~~~~-----------------  148 (279)
                      ...              ..+.+..+++|+|++.++||+.+.....         ..+.+....                 
T Consensus       126 ~~~--------------~~~~v~vS~~EIyne~i~DLL~~~~~~l~~~e~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~  191 (354)
T d1goja_         126 AAN--------------IEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGN  191 (354)
T ss_dssp             CTT--------------EEEEEEEEEEEEETTEEEETTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHH
T ss_pred             ccC--------------ceEEEEeehhheecceEeecccccccceeeeeecCCCEeecCceeecchhHHHHHHHHhhccc
Confidence            211              1144556999999999999997543221         111111111                 


Q ss_pred             -----------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy37           149 -----------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSVISSL  187 (279)
Q Consensus       149 -----------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~i~~l  187 (279)
                                                               ...+|+|+.......+.+++|+..||+||.+|++||.+|
T Consensus       192 ~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~aL  271 (354)
T d1goja_         192 ARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL  271 (354)
T ss_dssp             HHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHH
T ss_pred             ccccccccccccccccceEEEEEEEEeecCCCCeEEEEEEEeeccCcccccccCCccchhhhhhhhhHHHHHHHHHHHHH
Confidence                                                     111455555445567788899999999999999999999


Q ss_pred             HhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCcccccCCccH
Q psy37           188 AELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINKPTVNEDPNT  260 (279)
Q Consensus       188 ~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~~~~~~~~~~  260 (279)
                      ++   .+..|||||+||||++|+|+|||+++|+||+||+|+..+++||++||+||+++++|++.|++|.+...
T Consensus       272 ~~---~~~~~iPyR~SkLT~lLkd~Lgg~s~t~~I~~isp~~~~~~eTl~TL~fa~~~~~i~~~~~~n~~~~~  341 (354)
T d1goja_         272 TD---GKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP  341 (354)
T ss_dssp             HH---CSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSC
T ss_pred             hc---CCCCcCCcccCHHHHHHHHhcCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhccCccceEcCCCCH
Confidence            86   45679999999999999999999999999999999999999999999999999999999999987654

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=100.00  E-value=4.7e-54  Score=378.57  Aligned_cols=212  Identities=38%  Similarity=0.570  Sum_probs=166.1

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCC-----------CCCCCCccccce
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKAT-----------TDNSPDAHKDFT   87 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~-----------~G~~~~~~~~l~   87 (279)
                      .|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+...           +|++|++++++ 
T Consensus        48 ~f~FD~vf~~~~~q~~vy~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~l-  126 (345)
T d1x88a1          48 TYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQI-  126 (345)
T ss_dssp             EEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHH-
T ss_pred             eEecCEEeCCCCCHHHHHHHHHHHhHHHHhccCCceEEeeeeccccceEEeeecCCcccccccccCccCCcHHHHHHHH-
Confidence            589999999999999999999999999999999999999999999999999998654           59999999999 


Q ss_pred             ecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce--------------EEEecccccccc--
Q psy37            88 FDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT--------------FTMMGSKARNFG--  151 (279)
Q Consensus        88 f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~--------------~~~~g~~~~~~~--  151 (279)
                      |.......                ..+.+..+++|+|++.++|||.......              ..+.|.....+.  
T Consensus       127 f~~~~~~~----------------~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~v~gl~~~~v~s~  190 (345)
T d1x88a1         127 FEKLTDNG----------------TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNK  190 (345)
T ss_dssp             HHHTSSSS----------------EEEEEEEEEEEEETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSG
T ss_pred             HHhhhccC----------------ceEEEEEEEEEEECCeeEECCCCCCcccccceeeecccCCCCEEEcCCEEEEeCCH
Confidence            87654211                1144555999999999999997543211              112222211111  


Q ss_pred             -----------------------------------------------------------CccccchhhhhhhhhhhhhhH
Q psy37           152 -----------------------------------------------------------EGKDCVCSIVEAGDRLKEGAH  172 (279)
Q Consensus       152 -----------------------------------------------------------~~~~~~~~~~~~~~~~~e~~~  172 (279)
                                                                                 +|+|+.......+.++.|+..
T Consensus       191 ~e~~~~l~~~~~~R~~~~t~~n~~SsRsH~i~~i~i~~~~~~~~~~~~~~~s~l~~vDLAGsEr~~~~~~~~~~~~e~~~  270 (345)
T d1x88a1         191 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN  270 (345)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------C
T ss_pred             HHHHHHHHhhhccccccccCccccccccceEEEEEEEEeeccCCCCCceEeeeEEEEecCCccccccccchhhhhccccc
Confidence                                                                       344544445566788899999


Q ss_pred             HHHHHHHHHHHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccCc
Q psy37           173 INKSLVTLGSVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIINK  251 (279)
Q Consensus       173 in~Sl~~L~~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~~  251 (279)
                      ||+||++|++||.+|++    +..|||||+||||+||+|+|||+++|+||+||+|+..+++||++||+||+++++|+|+
T Consensus       271 in~Sl~~L~~vi~al~~----~~~~iPyR~SkLT~lL~d~Lgg~s~t~~i~~vsp~~~~~~eTl~tL~fa~~~~~I~nk  345 (345)
T d1x88a1         271 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK  345 (345)
T ss_dssp             CCHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCC
T ss_pred             ccchHHHHHHHHHHHhc----CCCcCCCccCHHHHHhHHhcCCCCcEEEEEEeCCchhhHHHHHHHHHHHHHhhhccCC
Confidence            99999999999999984    7789999999999999999999999999999999999999999999999999999985

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=100.00  E-value=8.4e-54  Score=378.35  Aligned_cols=215  Identities=35%  Similarity=0.439  Sum_probs=162.7

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC------CCCCCCCccccceecc
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA------TTDNSPDAHKDFTFDH   90 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~------~~G~~~~~~~~l~f~~   90 (279)
                      ...|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..      .+|++|+++++| |..
T Consensus        79 ~~~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~l-f~~  157 (362)
T d1v8ka_          79 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDV-FLL  157 (362)
T ss_dssp             EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHH-HHH
T ss_pred             ceeEeCCeecCCCCCHHHHHHHHHHHHHHHHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhH-HHH
Confidence            3458999999999999999999999999999999999999999999999999999743      589999999999 876


Q ss_pred             cccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce--------EEEeccccc--------------
Q psy37            91 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT--------FTMMGSKAR--------------  148 (279)
Q Consensus        91 ~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~--------~~~~g~~~~--------------  148 (279)
                      ......             ....+.+..+++|+|++.++||+.......        ..+.|....              
T Consensus       158 ~~~~~~-------------~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~  224 (362)
T d1v8ka_         158 KNQPRY-------------RNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINM  224 (362)
T ss_dssp             HTSHHH-------------HTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHH
T ss_pred             hhcccc-------------cccchhheeeeeeecCCeEEecccCCccccccccccCCcccCCCEEEEecCHHHHHHHHhc
Confidence            542211             111245566999999999999997432111        111111111              


Q ss_pred             ---------------------------------------cccCccccchhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy37           149 ---------------------------------------NFGEGKDCVCSIV-EAGDRLKEGAHINKSLVTLGSVISSLA  188 (279)
Q Consensus       149 ---------------------------------------~~~~~~~~~~~~~-~~~~~~~e~~~in~Sl~~L~~~i~~l~  188 (279)
                                                             ...+|+|+..... ..+.++.|+..||+||++|++||.+|+
T Consensus       225 g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~  304 (362)
T d1v8ka_         225 GSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALG  304 (362)
T ss_dssp             HHHTCC--------CCCSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccCcccCcceeeEEEEEEEecceeeeeEeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHHh
Confidence                                                   1114455443332 234567899999999999999999998


Q ss_pred             hhhCCCCCcccccchhHHHHhHhh-cCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcccc
Q psy37           189 ELSTKKSTFIPYRDSVLTWLLKDS-LGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNII  249 (279)
Q Consensus       189 ~~~~~~~~~ipyr~SkLT~lL~~~-l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~  249 (279)
                      +    +..|||||+||||+||+|+ |||+|+|+||+||+|+..+++||++||+||+++|+|.
T Consensus       305 ~----~~~hiPyR~SkLT~lLkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~It  362 (362)
T d1v8ka_         305 Q----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS  362 (362)
T ss_dssp             C----------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred             c----CCCcCCCccCHHHHhhhhccCCCCccEEEEEEeCCChhhHHHHHHHHHHHHHHhcCC
Confidence            4    6789999999999999998 7999999999999999999999999999999999873

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=100.00  E-value=1.8e-53  Score=375.19  Aligned_cols=223  Identities=48%  Similarity=0.739  Sum_probs=167.5

Q ss_pred             cceeeeccceeecCCCCC-CCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCC--CCCCCCCccccc
Q psy37            10 HKDFTFDHSYWSFDPSSP-QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA--TTDNSPDAHKDF   86 (279)
Q Consensus        10 ~~~~~fd~~~f~fd~vf~-~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~--~~G~~~~~~~~l   86 (279)
                      .+.|+||++|+..+.--+ ..++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+++  ++|++|+++++|
T Consensus        44 ~k~f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~Glipr~l~~l  123 (349)
T d2zfia1          44 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDL  123 (349)
T ss_dssp             CEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHH
T ss_pred             CeeEEeceEeCCCCCccccccccHHHHHHHhhHHHHHHHHhccCceeeeeccCCCCCceeeccCccccccCchHHHHhhh
Confidence            345666666543221111 13689999999999999999999999999999999999999999865  799999999999


Q ss_pred             eecccccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceE----------EEeccccc--------
Q psy37            87 TFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTF----------TMMGSKAR--------  148 (279)
Q Consensus        87 ~f~~~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~----------~~~g~~~~--------  148 (279)
                       |..+....+...             .+.+..+++|+|+++++||+.+......          .+.+....        
T Consensus       124 -f~~~~~~~~~~~-------------~~~v~~S~~Eiyne~i~DLL~~~~~~~~~i~~~~~~~~~v~~l~~~~v~s~~e~  189 (349)
T d2zfia1         124 -FSRINDTTNDNM-------------SYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDI  189 (349)
T ss_dssp             -HHHHHTCCCTTE-------------EEEEEEEEEEEETTEEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHH
T ss_pred             -hhhccccccCCc-------------ceEEEEEeeeeeCCEEEecccccccCCceEEecCCCCcEEEEeEEEeccCHHHH
Confidence             987753322211             1445559999999999999975433221          11111111        


Q ss_pred             ------------------------------------------------------cccCccccchhhhhhhhhhhhhhHHH
Q psy37           149 ------------------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHIN  174 (279)
Q Consensus       149 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in  174 (279)
                                                                            ...+|+|+.......+.+++|+..||
T Consensus       190 ~~~l~~g~~~R~~~~t~~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~e~~~IN  269 (349)
T d2zfia1         190 QDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANIN  269 (349)
T ss_dssp             HHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHH
T ss_pred             HHHHHhcccCeEeccCCCccccccccceEEEEEEEEecccCCCcccceeeEEEEeecccchhhhhcCCcccchhhccchh
Confidence                                                                  11145555555556788899999999


Q ss_pred             HHHHHHHHHHHHHHhhh--------CCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhc
Q psy37           175 KSLVTLGSVISSLAELS--------TKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAK  246 (279)
Q Consensus       175 ~Sl~~L~~~i~~l~~~~--------~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~  246 (279)
                      +||++|++||.+|++.+        ..+..|||||+||||+||+|+|||+++|+||+||+|...+++||++||+||+++|
T Consensus       270 ~SL~~L~~vi~aL~~~~~~~~~~~~~~~~~~IPyR~SkLT~lL~d~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~fa~rak  349 (349)
T d2zfia1         270 KSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK  349 (349)
T ss_dssp             HHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHhhhcccccccccCCCCccCCcCCHHHHHHHHhcCCCccEEEEEEeCCChhhHHHHHHHHHHHHhcC
Confidence            99999999999998754        2345799999999999999999999999999999999999999999999999986

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=100.00  E-value=4.9e-53  Score=371.51  Aligned_cols=214  Identities=34%  Similarity=0.525  Sum_probs=171.0

Q ss_pred             eeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCCC
Q psy37            19 YWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDPS   98 (279)
Q Consensus        19 ~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~~   98 (279)
                      .|.||+||+++++|++||+.+. |+|+.+++|+|+||||||||||||||||+|+  .+|++|+++++| |..........
T Consensus        51 ~f~FD~vf~~~~~q~~vy~~v~-~~v~~~l~G~n~~i~aYGqtgSGKT~T~~G~--~~Giipr~~~~l-f~~~~~~~~~~  126 (342)
T d1f9va_          51 EFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHI-FNWINKLKTKG  126 (342)
T ss_dssp             EEEESEEECTTCCHHHHHHHHH-HHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHH-HHHHHHHGGGT
T ss_pred             EeecCeEeCCCCCHHHHHHHhh-hhhcchhcccccceeeeeccCCccccccccC--cCchhHHHHHHH-Hhhhhhhhccc
Confidence            4789999999999999999855 9999999999999999999999999999995  589999999999 87665322211


Q ss_pred             CcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCc-------------------eEEEeccccccc---------
Q psy37            99 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGK-------------------TFTMMGSKARNF---------  150 (279)
Q Consensus        99 ~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~-------------------~~~~~g~~~~~~---------  150 (279)
                                   ..+.+..+++|+|+++++|||.+....                   ...+.|.....+         
T Consensus       127 -------------~~~~v~vS~~EIyne~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~  193 (342)
T d1f9va_         127 -------------WDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEII  193 (342)
T ss_dssp             -------------CEEEEEEEEEEEETTEEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHH
T ss_pred             -------------cccceeeeeeeeccCeeEECCCCCCCccccccccceeeeeecCCCCcEEEeeeEEEEecchHHHHHH
Confidence                         124455699999999999999654321                   112221111111         


Q ss_pred             -------------------------------------------------cCccccchhhhhhhhhhhhhhHHHHHHHHHH
Q psy37           151 -------------------------------------------------GEGKDCVCSIVEAGDRLKEGAHINKSLVTLG  181 (279)
Q Consensus       151 -------------------------------------------------~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~  181 (279)
                                                                       .+|+|+.......+.+++|+..||+||++|+
T Consensus       194 l~~g~~~R~~~~t~~N~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~vDLAGse~~~~~~~~~~~~~e~~~iN~Sl~~L~  273 (342)
T d1f9va_         194 LKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG  273 (342)
T ss_dssp             HHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhccccccccccccCcccceeEEEEEEEecCCccceeeeeeeeeeccCCcccccccchhhhhhhhhhccHHHHHHH
Confidence                                                             1455555555567888999999999999999


Q ss_pred             HHHHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccccC
Q psy37           182 SVISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNIIN  250 (279)
Q Consensus       182 ~~i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i~~  250 (279)
                      +||.+|++.+ .+..|||||+||||+||+|+|||+++|+||+||+|+..+++||++||+||+++++|+.
T Consensus       274 ~vi~aL~~~~-~~~~~iPyR~SkLT~lL~d~lgg~s~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~  341 (342)
T d1f9va_         274 DVIHALGQPD-STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL  341 (342)
T ss_dssp             HHHHHHTSCC----CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTT
T ss_pred             HHHHHHhccc-CCCCcCCCccCHHHHHHHHhcCCCceEEEEEEECCchhhHHHHHHHHHHHHHhhccee
Confidence            9999998633 3456899999999999999999999999999999999999999999999999999974

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4.6e-53  Score=374.56  Aligned_cols=211  Identities=32%  Similarity=0.487  Sum_probs=163.9

Q ss_pred             ceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCCCCCCCccccceecccccccCC
Q psy37            18 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATTDNSPDAHKDFTFDHSYWSFDP   97 (279)
Q Consensus        18 ~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~G~~~~~~~~l~f~~~~~~~~~   97 (279)
                      ..|.||+||+++++|++||+. +.|+|+++++|+|+||||||||||||||||+|++.++|++|+++++| |.......+.
T Consensus        92 ~~F~FD~vf~~~~~Q~~Vy~~-v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~L-f~~~~~~~~~  169 (368)
T d2ncda_          92 QIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL-FDSIRGYRNL  169 (368)
T ss_dssp             CEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHH-HHHHHHHHTT
T ss_pred             eeeECCeEECCCCCccchHHH-HHHHHHHHhcccceeEEeeccCCCccceEecccccccchhhHHHHHH-hhhhhhhccc
Confidence            458899999999999999975 56999999999999999999999999999999999999999999999 8776533222


Q ss_pred             CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCce-----------EEEeccccc------------------
Q psy37            98 SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKT-----------FTMMGSKAR------------------  148 (279)
Q Consensus        98 ~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~-----------~~~~g~~~~------------------  148 (279)
                      ..             .+.+..+++|+|++.++||+.+.....           ..+.|....                  
T Consensus       170 ~~-------------~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~  236 (368)
T d2ncda_         170 GW-------------EYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMN  236 (368)
T ss_dssp             SC-------------EEEEEEEEEEESSSCEEETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHH
T ss_pred             cc-------------cceEEEEEEEEecceeecccccccccccceeeccccccccccccceeccCCHHHHHHHHHHHHhh
Confidence            11             144556999999999999997543321           111111111                  


Q ss_pred             ---------cccCccccchhhh---------------------------hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhC
Q psy37           149 ---------NFGEGKDCVCSIV---------------------------EAGDRLKEGAHINKSLVTLGSVISSLAELST  192 (279)
Q Consensus       149 ---------~~~~~~~~~~~~~---------------------------~~~~~~~e~~~in~Sl~~L~~~i~~l~~~~~  192 (279)
                               ..+..+|++..+.                           ..+.+++|+..||+||++|++||.+|++   
T Consensus       237 r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLAGse~~~~~~~~~E~~~IN~SL~aL~~vi~aL~~---  313 (368)
T d2ncda_         237 RATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQ---  313 (368)
T ss_dssp             SCCCSSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECCCCCCC----------CTTHHHHHHHHHHHHHHT---
T ss_pred             cccccccccccccccceEEEEEEEEEecCCCceEeeeeeeeeeccccccchhhhhcccccchhhHHHHHHHHHHHhc---
Confidence                     1112333322211                           3456788999999999999999999995   


Q ss_pred             CCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcc
Q psy37           193 KKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN  247 (279)
Q Consensus       193 ~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~  247 (279)
                       +..|||||+||||++|+|+|||+++|+||+||+|+..+++||++||+||+++++
T Consensus       314 -~~~~iPyR~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~  367 (368)
T d2ncda_         314 -KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS  367 (368)
T ss_dssp             -TCSCCCGGGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTT
T ss_pred             -CCCCCCCcCCHHHHHHHHhcCCCCeEEEEEEECCChhhHHHHHHHHHHHHHHhc
Confidence             778999999999999999999999999999999999999999999999999986

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.1e-52  Score=365.82  Aligned_cols=212  Identities=30%  Similarity=0.367  Sum_probs=168.2

Q ss_pred             cceeecCCCCCCCCCHHHHHHHhHHHHHHHhc-cccCeeEeeccCcCCCceeEecCCC-----CCCCCCCCccccceecc
Q psy37            17 HSYWSFDPSSPQFASQEQVFNDLGMDVVDAAF-EGYNACVFAYGQTGSGKTFTMMGSK-----ATTDNSPDAHKDFTFDH   90 (279)
Q Consensus        17 ~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~-~G~n~~v~~yG~tgSGKT~Tl~G~~-----~~~G~~~~~~~~l~f~~   90 (279)
                      ...|.||+||+++++|++||+.++.|+|.+++ +|+|+||||||||||||||||+|+.     +++|++|+++++| |..
T Consensus        49 ~~~F~fD~Vf~~~~~q~~vy~~~~~plv~~~~~~G~n~~i~aYGqTGSGKTyTm~G~~~~~~~~~~Giipr~~~~l-f~~  127 (330)
T d1ry6a_          49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDI-FTF  127 (330)
T ss_dssp             EEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHH-HHH
T ss_pred             cceEeCCeecCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeeeccccccceeeecccccccccCCCchhHHHhhh-hhh
Confidence            34689999999999999999999999999988 5999999999999999999999975     5689999999999 877


Q ss_pred             cccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEE--------Eeccccc--------------
Q psy37            91 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT--------MMGSKAR--------------  148 (279)
Q Consensus        91 ~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~--------~~g~~~~--------------  148 (279)
                      .......              ..+.+..+++|+|++.++|||.+.......        +.|....              
T Consensus       128 ~~~~~~~--------------~~~~v~~S~~EIyne~i~DLL~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~  193 (330)
T d1ry6a_         128 LNIYDKD--------------NTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMID  193 (330)
T ss_dssp             HHHHCSS--------------SCEEEEEEEEEEETTEEEESCCC-----------CCBCGGGSCCEEECSHHHHHHHHHH
T ss_pred             hhhhccc--------------ceEEEEEEEEeeecccccccccccccceeeecCCCCccccCceEEEEeeccchhhhhhc
Confidence            6432211              013455599999999999999754321110        0010000              


Q ss_pred             -----------------------------------------cccCccccchhhhhhhhh-hhhhhHHHHHHHHHHHHHHH
Q psy37           149 -----------------------------------------NFGEGKDCVCSIVEAGDR-LKEGAHINKSLVTLGSVISS  186 (279)
Q Consensus       149 -----------------------------------------~~~~~~~~~~~~~~~~~~-~~e~~~in~Sl~~L~~~i~~  186 (279)
                                                               ...+|+|+.......+.. ..|+..||+||.+|++||.+
T Consensus       194 ~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~~~~~~s~l~~vDLAGsEr~~~~~~~~~~~~~e~~~IN~sL~~L~~vi~a  273 (330)
T d1ry6a_         194 GVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRA  273 (330)
T ss_dssp             HHHHHHHCTTCCTTGGGGSEEEEEEEEEETTTTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCcceEEEEEEEecccccccceeeeecccccccccccccCCchhhhhhhhhhHHHHHHHHHHHH
Confidence                                                     111444444433344444 56999999999999999999


Q ss_pred             HHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhcc
Q psy37           187 LAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKN  247 (279)
Q Consensus       187 l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~  247 (279)
                      |++    +..|||||+||||+||+|+|||+++|+||+||+|+..++.||++||+||+++|.
T Consensus       274 l~~----~~~~iPyR~SkLT~lL~d~lggns~t~~I~~vsp~~~~~~eTl~tL~fa~rak~  330 (330)
T d1ry6a_         274 MDS----DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN  330 (330)
T ss_dssp             HTT----STTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC
T ss_pred             Hhc----CCCcCCCccCHHHHHHHHhcCCCCeEEEEEEECCchhhHHHHHHHHHHHHHhcC
Confidence            984    778999999999999999999999999999999999999999999999999974

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-52  Score=365.98  Aligned_cols=216  Identities=39%  Similarity=0.519  Sum_probs=177.1

Q ss_pred             eeccceeecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecCCCCCC---CCCCCccccceecc
Q psy37            14 TFDHSYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKATT---DNSPDAHKDFTFDH   90 (279)
Q Consensus        14 ~fd~~~f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G~~~~~---G~~~~~~~~l~f~~   90 (279)
                      ......|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..++   |++|+++.++ |..
T Consensus        38 ~~~~~~f~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~~G~~~~~~~~gii~r~l~~l-~~~  116 (323)
T d1bg2a_          38 VIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDI-FNY  116 (323)
T ss_dssp             EETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHH-HHH
T ss_pred             EECCceeECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCCCCceeccCCcccccccchhhhHHHHH-Hhh
Confidence            344556899999999999999999999999999999999999999999999999999987665   8999999999 877


Q ss_pred             cccccCCCCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEE---------Eeccccc-------------
Q psy37            91 SYWSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT---------MMGSKAR-------------  148 (279)
Q Consensus        91 ~~~~~~~~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~---------~~g~~~~-------------  148 (279)
                      .......              ..+.+..+++|+|++.++||+.+.......         +.+....             
T Consensus       117 ~~~~~~~--------------~~~~v~~S~~EIyne~i~DLL~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~  182 (323)
T d1bg2a_         117 IYSMDEN--------------LEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTID  182 (323)
T ss_dssp             HHHHCSS--------------EEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHH
T ss_pred             hhccccc--------------cceEEEEEEEEEEcCcccccccccccceeEeeccccceeecCCEEEEEeccHhHhHHhh
Confidence            6532211              114455699999999999999754332211         1111111             


Q ss_pred             ---------------------------------------------cccCccccchhhhhhhhhhhhhhHHHHHHHHHHHH
Q psy37           149 ---------------------------------------------NFGEGKDCVCSIVEAGDRLKEGAHINKSLVTLGSV  183 (279)
Q Consensus       149 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~e~~~in~Sl~~L~~~  183 (279)
                                                                   ...+|+|+.......+.++.|+..||+||++|++|
T Consensus       183 ~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~~~~~~~~~s~l~~vDLAGse~~~~~~~~~~~~~e~~~iN~SL~~L~~v  262 (323)
T d1bg2a_         183 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNV  262 (323)
T ss_dssp             HHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHH
T ss_pred             hcccceeecccCCCCCCCccceEEEEEEEEEeCCCCcEEEEEEEEEecccccccccccchhhhhhhhhcccccHHHHHHH
Confidence                                                         11144444444445677889999999999999999


Q ss_pred             HHHHHhhhCCCCCcccccchhHHHHhHhhcCCCceEEEEEEeCCCCcChHHHHHHHHHHHHhccc
Q psy37           184 ISSLAELSTKKSTFIPYRDSVLTWLLKDSLGGNSKTIMIAAISPADVNYSETLSTLRYANRAKNI  248 (279)
Q Consensus       184 i~~l~~~~~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~i~~isp~~~~~~~tl~tL~fa~~~~~i  248 (279)
                      |.+|++    +..|||||+||||++|+|+|||+++++||+||+|+..+++||++||+||+++|+|
T Consensus       263 i~al~~----~~~~iPyR~SkLT~lL~d~L~g~~~t~~I~~isp~~~~~~eTl~tL~fa~r~k~I  323 (323)
T d1bg2a_         263 ISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI  323 (323)
T ss_dssp             HHHHHT----TCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred             HHHHhc----CCCccCCccCHHHHHHHHhcCCCccEEEEEEECCcchhHHHHHHHHHHHHHhcCC
Confidence            999985    6789999999999999999999999999999999999999999999999999986

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.13  E-value=0.0017  Score=50.71  Aligned_cols=49  Identities=18%  Similarity=0.353  Sum_probs=31.6

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      |+||..+- ..+++..|..+- .+++.--..+| .++-||++|+||||-+.+
T Consensus         7 ~tFdnF~v-g~~N~~a~~~~~-~~~~~~~~~~n-~l~l~G~~G~GKTHLl~A   55 (213)
T d1l8qa2           7 YTLENFIV-GEGNRLAYEVVK-EALENLGSLYN-PIFIYGSVGTGKTHLLQA   55 (213)
T ss_dssp             CCSSSCCC-CTTTHHHHHHHH-HHHHTTTTSCS-SEEEECSSSSSHHHHHHH
T ss_pred             CChhhccC-CCcHHHHHHHHH-HHHhCcCCCCC-cEEEECCCCCcHHHHHHH
Confidence            56776553 445666655543 44444333344 488999999999999855

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.84  E-value=0.0054  Score=48.94  Aligned_cols=36  Identities=19%  Similarity=0.110  Sum_probs=23.1

Q ss_pred             HHHhHHHHHHHhccccCe-----eEeeccCcCCCceeEecC
Q psy37            36 FNDLGMDVVDAAFEGYNA-----CVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        36 y~~~~~~lv~~v~~G~n~-----~v~~yG~tgSGKT~Tl~G   71 (279)
                      ++.+..-+...+.+|...     .++.||++|+|||.++-.
T Consensus        25 ~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~   65 (287)
T d1w5sa2          25 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKF   65 (287)
T ss_dssp             HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHH
Confidence            334433334555665543     467899999999998843

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.31  E-value=0.011  Score=47.40  Aligned_cols=50  Identities=20%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHH-Hhcc--c--cCeeEeeccCcCCCceeEe
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVD-AAFE--G--YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~-~v~~--G--~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .+||.|-+.+.-.+++.+.+..|+.. ..+.  |  ....|+.||++|+|||+..
T Consensus         4 ~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~   58 (265)
T d1r7ra3           4 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA   58 (265)
T ss_dssp             CSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHH
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHH
Confidence            36788888888888999888767652 2332  3  3457999999999999976

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.08  E-value=0.02  Score=45.31  Aligned_cols=29  Identities=34%  Similarity=0.425  Sum_probs=21.3

Q ss_pred             HHHHHhccccCe-----eEeeccCcCCCceeEec
Q psy37            42 DVVDAAFEGYNA-----CVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        42 ~lv~~v~~G~n~-----~v~~yG~tgSGKT~Tl~   70 (279)
                      ..+..+..|...     .|+.||++|+|||+..-
T Consensus        17 ~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~   50 (273)
T d1gvnb_          17 DNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRS   50 (273)
T ss_dssp             HHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHH
T ss_pred             HHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHH
Confidence            455555555544     59999999999999763

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=92.47  E-value=0.013  Score=50.08  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=27.1

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      ..++.++..-.+.|+.-|+||||||.||..
T Consensus       148 ~~l~~l~~~~~GliLvtGpTGSGKSTTl~~  177 (401)
T d1p9ra_         148 DNFRRLIKRPHGIILVTGPTGSGKSTTLYA  177 (401)
T ss_dssp             HHHHHHHTSSSEEEEEECSTTSCHHHHHHH
T ss_pred             HHHHHHHhhhhceEEEEcCCCCCccHHHHH
Confidence            567788899999999999999999999976

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.07  E-value=0.038  Score=43.40  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=21.0

Q ss_pred             HHHHHhcc---ccCeeEeeccCcCCCceeEec
Q psy37            42 DVVDAAFE---GYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        42 ~lv~~v~~---G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+|...+.   +...+++-||++|+|||+++-
T Consensus        30 ~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~   61 (276)
T d1fnna2          30 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR   61 (276)
T ss_dssp             HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred             HHHHHHHhCCCCCCCceEEECCCCCCHHHHHH
Confidence            45555443   344689999999999998763

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.51  E-value=0.045  Score=43.18  Aligned_cols=48  Identities=19%  Similarity=0.075  Sum_probs=29.0

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHHhccccC---eeEeeccCcCCCceeEe
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDAAFEGYN---ACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~v~~G~n---~~v~~yG~tgSGKT~Tl   69 (279)
                      --+.+......-+.|.+... .+++.+-.+-.   .+|+.||++|+|||+..
T Consensus         7 ~~~~~i~~~~~i~~i~~~~~-~~~~~~~~~~~~p~~~vLL~GppGtGKT~la   57 (246)
T d1d2na_           7 IMNGIIKWGDPVTRVLDDGE-LLVQQTKNSDRTPLVSVLLEGPPHSGKTALA   57 (246)
T ss_dssp             CTTCCCCCSHHHHHHHHHHH-HHHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred             hccCCcCcCHHHHHHHHHHH-HHHHHHhccCCCCCeEEEEECcCCCCHHHHH
Confidence            33444444433344544443 45555543332   47999999999999876

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=91.36  E-value=0.032  Score=44.14  Aligned_cols=19  Identities=32%  Similarity=0.359  Sum_probs=16.2

Q ss_pred             CeeEeeccCcCCCceeEec
Q psy37            52 NACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ...|+.||+.|+|||+...
T Consensus        42 ~~giLl~GppGtGKT~la~   60 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLAR   60 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHH
T ss_pred             CceEEEecCCCCChhHHHH
Confidence            3469999999999999873

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.18  E-value=0.049  Score=43.20  Aligned_cols=50  Identities=20%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             ecCCCCCCCCCHHHHHHHhHHHHHHH-hcc--cc--CeeEeeccCcCCCceeEec
Q psy37            21 SFDPSSPQFASQEQVFNDLGMDVVDA-AFE--GY--NACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        21 ~fd~vf~~~~~q~~vy~~~~~~lv~~-v~~--G~--n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .||.|-+.+..-+++-+.+..|+... .+.  |.  .-.|+.||+.|+|||+...
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~   56 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR   56 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHH
T ss_pred             ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHH
Confidence            46777777766666666655554422 222  32  3469999999999998763

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=91.14  E-value=0.019  Score=45.74  Aligned_cols=46  Identities=22%  Similarity=0.232  Sum_probs=29.3

Q ss_pred             eecCCCCCCCCCHHHHHHHhHHHHHHHhc---------cccCeeEeeccCcCCCceeEec
Q psy37            20 WSFDPSSPQFASQEQVFNDLGMDVVDAAF---------EGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        20 f~fd~vf~~~~~q~~vy~~~~~~lv~~v~---------~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+||.|.+.+..-+++-     .+|+.+.         ......++.||++|+|||++.-
T Consensus         9 ~t~~Di~Gl~~~k~~l~-----e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~   63 (256)
T d1lv7a_           9 TTFADVAGCDEAKEEVA-----ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK   63 (256)
T ss_dssp             CCGGGSCSCHHHHHHTH-----HHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHH
T ss_pred             CCHHHHhchHHHHHHHH-----HHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHH
Confidence            45677776655555552     3333221         1234679999999999999863

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=90.79  E-value=0.021  Score=43.94  Aligned_cols=21  Identities=38%  Similarity=0.483  Sum_probs=17.3

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ++....|+..|++|+|||.|+
T Consensus         3 ~~~~~vi~lvGptGvGKTTTi   23 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTI   23 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHH
Confidence            345567788999999999997

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.21  E-value=0.04  Score=42.61  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=18.3

Q ss_pred             ccccCeeEeeccCcCCCceeEe
Q psy37            48 FEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        48 ~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      -+|....++-||++|+|||.++
T Consensus        41 ~~~~~~~lll~Gp~G~GKTtla   62 (231)
T d1iqpa2          41 KTGSMPHLLFAGPPGVGKTTAA   62 (231)
T ss_dssp             HHTCCCEEEEESCTTSSHHHHH
T ss_pred             HcCCCCeEEEECCCCCcHHHHH
Confidence            3566667999999999999876

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.20  E-value=0.045  Score=42.29  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=18.4

Q ss_pred             ccccCeeEeeccCcCCCceeEec
Q psy37            48 FEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        48 ~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      -.+....++.||++|+|||.++.
T Consensus        29 ~~~~~~~lll~Gp~G~GKTtl~~   51 (237)
T d1sxjd2          29 KSANLPHMLFYGPPGTGKTSTIL   51 (237)
T ss_dssp             TCTTCCCEEEECSTTSSHHHHHH
T ss_pred             HcCCCCeEEEECCCCCChHHHHH
Confidence            35555679999999999998763

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.56  E-value=0.085  Score=40.95  Aligned_cols=25  Identities=20%  Similarity=0.068  Sum_probs=19.6

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeE
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      ..|..++.|.|..|.  ++||||||.+
T Consensus        50 ~~i~~~l~g~~~~i~--apTGsGKT~~   74 (237)
T d1gkub1          50 MWAKRILRKESFAAT--APTGVGKTSF   74 (237)
T ss_dssp             HHHHHHHTTCCEECC--CCBTSCSHHH
T ss_pred             HHHHHHHCCCCEEEE--ecCCChHHHH
Confidence            456778899886655  6999999964

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.46  E-value=0.071  Score=41.05  Aligned_cols=28  Identities=18%  Similarity=0.283  Sum_probs=24.0

Q ss_pred             HHHHHhccc---cCeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEG---YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G---~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +-+|.++.|   ....++.+|++|||||+-.
T Consensus        21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~   51 (251)
T d1szpa2          21 KNLDTLLGGGVETGSITELFGEFRTGKSQLC   51 (251)
T ss_dssp             HHHHHHHTSSEESSSEEEEEESTTSSHHHHH
T ss_pred             HHHHhhhCCCCcCCeEEEEEcCCCCCHHHHH
Confidence            568889988   6778999999999999754

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.42  E-value=0.04  Score=41.78  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=18.9

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeE
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      .+..+++|.|  ++..++||||||++
T Consensus        33 ai~~l~~~~~--~il~apTGsGKT~~   56 (202)
T d2p6ra3          33 AVEKVFSGKN--LLLAMPTAAGKTLL   56 (202)
T ss_dssp             HHHHHTTCSC--EEEECSSHHHHHHH
T ss_pred             HHHHHHcCCC--EEEEcCCCCchhHH
Confidence            3556678876  67789999999976

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=88.36  E-value=0.13  Score=39.69  Aligned_cols=38  Identities=32%  Similarity=0.257  Sum_probs=24.1

Q ss_pred             CHHHHHHHhHHHHHHHhc--cccCeeEeeccCcCCCceeEe
Q psy37            31 SQEQVFNDLGMDVVDAAF--EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        31 ~q~~vy~~~~~~lv~~v~--~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|+++=+..- ..++...  ...-..++-||++|+|||.+.
T Consensus        13 Gqe~~~~~l~-~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA   52 (238)
T d1in4a2          13 GQENVKKKLS-LALEAAKMRGEVLDHVLLAGPPGLGKTTLA   52 (238)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred             ChHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence            5666644443 4444433  223446888999999999865

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=88.30  E-value=0.054  Score=41.67  Aligned_cols=19  Identities=26%  Similarity=0.384  Sum_probs=11.4

Q ss_pred             cCeeEeeccCcCCCceeEe
Q psy37            51 YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        51 ~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ....|+..|++|+|||.|+
T Consensus        11 ~p~vi~lvGptGvGKTTTi   29 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTA   29 (211)
T ss_dssp             SSEEEEEECSCCC----HH
T ss_pred             CCEEEEEECCCCCCHHHHH
Confidence            3455667899999999996

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=88.16  E-value=0.14  Score=39.58  Aligned_cols=43  Identities=26%  Similarity=0.258  Sum_probs=26.7

Q ss_pred             cCCCCCCCCCHHHHHHHhHHHHHHHhccc--cCeeEeeccCcCCCceeEe
Q psy37            22 FDPSSPQFASQEQVFNDLGMDVVDAAFEG--YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        22 fd~vf~~~~~q~~vy~~~~~~lv~~v~~G--~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ||.+.    .|+++-+.. +.+|+....+  .-..++.||++|+|||.+.
T Consensus         8 ~ddiv----Gq~~~~~~L-~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla   52 (239)
T d1ixsb2           8 LDEYI----GQERLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA   52 (239)
T ss_dssp             GGGSC----SCHHHHHHH-HHHHHHHTTSSSCCCCEEEECCTTSCHHHHH
T ss_pred             HHHhC----CHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence            45554    455554443 3455554432  2346888999999999765

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.12  E-value=0.082  Score=40.56  Aligned_cols=26  Identities=38%  Similarity=0.523  Sum_probs=21.4

Q ss_pred             HHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      ..+..+++|.|  |++..+||||||++.
T Consensus        39 ~aip~il~g~d--vl~~a~TGsGKT~a~   64 (212)
T d1qdea_          39 RAIMPIIEGHD--VLAQAQSGTGKTGTF   64 (212)
T ss_dssp             HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred             HHHHHHHcCCC--EEeecccccchhhhh
Confidence            35666789988  788889999999976

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.58  E-value=0.063  Score=38.25  Aligned_cols=16  Identities=31%  Similarity=0.457  Sum_probs=13.8

Q ss_pred             eEeeccCcCCCceeEe
Q psy37            54 CVFAYGQTGSGKTFTM   69 (279)
Q Consensus        54 ~v~~yG~tgSGKT~Tl   69 (279)
                      .|+..|++|||||+..
T Consensus         4 lIii~G~pGsGKTTla   19 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWA   19 (152)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            5778999999999874

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.61  E-value=0.048  Score=44.24  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=15.7

Q ss_pred             CeeEeeccCcCCCceeEec
Q psy37            52 NACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .+.++.-|+.|||||+||.
T Consensus        24 ~g~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHH
Confidence            4457788999999999984

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=86.57  E-value=0.054  Score=41.69  Aligned_cols=17  Identities=35%  Similarity=0.536  Sum_probs=14.9

Q ss_pred             eeEeeccCcCCCceeEe
Q psy37            53 ACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        53 ~~v~~yG~tgSGKT~Tl   69 (279)
                      ..|+..|++|+|||.|+
T Consensus        10 ~vi~lvGptGvGKTTTi   26 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTI   26 (211)
T ss_dssp             EEEEEECCTTSCHHHHH
T ss_pred             EEEEEECCCCCCHHHHH
Confidence            45777899999999998

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.39  E-value=0.061  Score=43.14  Aligned_cols=19  Identities=26%  Similarity=0.350  Sum_probs=15.2

Q ss_pred             CeeEeeccCcCCCceeEec
Q psy37            52 NACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ++-++..|+.|||||+||.
T Consensus        14 ~~~~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             SSEEEECCCTTSCHHHHHH
T ss_pred             CCCEEEEeeCCccHHHHHH
Confidence            3446677999999999984

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.26  E-value=0.13  Score=40.80  Aligned_cols=39  Identities=18%  Similarity=0.225  Sum_probs=29.4

Q ss_pred             CCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeE
Q psy37            26 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        26 f~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      |..+.+|..+++++.    .++-.+....-+.+|-+|||||-.
T Consensus        82 FeLT~~Q~~ai~ei~----~d~~~~~~m~rLL~GdvGSGKT~V  120 (264)
T d1gm5a3          82 FKLTNAQKRAHQEIR----NDMISEKPMNRLLQGDVGSGKTVV  120 (264)
T ss_dssp             SCCCHHHHHHHHHHH----HHHHSSSCCCCEEECCSSSSHHHH
T ss_pred             ccCCchHHHHHHHHH----HHhhccCcceeeeeccccccccHH
Confidence            345667777766654    456677888889999999999864

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=86.16  E-value=0.073  Score=37.02  Aligned_cols=17  Identities=24%  Similarity=0.251  Sum_probs=12.9

Q ss_pred             eEeeccCcCCCceeEec
Q psy37            54 CVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        54 ~v~~yG~tgSGKT~Tl~   70 (279)
                      .++.+++||||||+++.
T Consensus         9 ~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             EEEECCCTTSSTTTTHH
T ss_pred             cEEEEcCCCCChhHHHH
Confidence            34667789999998763

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=86.05  E-value=0.06  Score=41.48  Aligned_cols=18  Identities=28%  Similarity=0.462  Sum_probs=15.3

Q ss_pred             CeeEeeccCcCCCceeEe
Q psy37            52 NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl   69 (279)
                      ...|+..|++|+|||.|+
T Consensus        11 p~vi~lvGptGvGKTTTi   28 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSC   28 (213)
T ss_dssp             CEEEEEECCTTSSHHHHH
T ss_pred             CEEEEEECCCCCCHHHHH
Confidence            346778899999999997

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.22  E-value=0.17  Score=38.33  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=20.1

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .+..+++|.|  |++.++||||||..-
T Consensus        31 aip~il~g~d--vi~~a~tGsGKTlay   55 (206)
T d1s2ma1          31 AIPVAITGRD--ILARAKNGTGKTAAF   55 (206)
T ss_dssp             HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred             HHHHHHcCCC--EEEecCCcchhhhhh
Confidence            3455678988  889999999999754

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.82  E-value=0.14  Score=38.80  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=19.4

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|..+++|.|  |++-.+||||||...
T Consensus        31 aip~~l~G~d--vii~a~TGSGKTlay   55 (209)
T d1q0ua_          31 IIPGALRGES--MVGQSQTGTGKTHAY   55 (209)
T ss_dssp             HHHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred             HHHHHHCCCC--eEeecccccccceee
Confidence            4556678987  667789999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.47  E-value=0.25  Score=37.69  Aligned_cols=21  Identities=43%  Similarity=0.675  Sum_probs=16.9

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +|.-..++-||++|+|||.+.
T Consensus        32 ~~~~~~lLl~Gp~G~GKttl~   52 (227)
T d1sxjc2          32 EGKLPHLLFYGPPGTGKTSTI   52 (227)
T ss_dssp             TTCCCCEEEECSSSSSHHHHH
T ss_pred             cCCCCeEEEECCCCCChhHHH
Confidence            565556888999999999765

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=84.27  E-value=0.19  Score=41.55  Aligned_cols=61  Identities=56%  Similarity=1.120  Sum_probs=48.7

Q ss_pred             ceecccccccCC-CCcccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37            86 FTFDHSYWSFDP-SSPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus        86 l~f~~~~~~~~~-~~~~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      +.|+.+.|.... .....+++.++|+..+.+++..++++|+.+++.+++.++|+++++.|..
T Consensus        47 f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~  108 (349)
T d2zfia1          47 FSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ  108 (349)
T ss_dssp             EECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCS
T ss_pred             EEeceEeCCCCCccccccccHHHHHHHhhHHHHHHHHhccCceeeeeccCCCCCceeeccCc
Confidence            346665544332 2233468999999999999999999999999999999999999998864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.15  E-value=0.092  Score=40.90  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=17.0

Q ss_pred             ccCeeEeeccCcCCCceeEec
Q psy37            50 GYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        50 G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      |.--.++-||++|+|||.+..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~   70 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAH   70 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHH
Confidence            344579999999999998763

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=84.08  E-value=0.081  Score=40.50  Aligned_cols=17  Identities=47%  Similarity=0.511  Sum_probs=14.4

Q ss_pred             eeEeeccCcCCCceeEe
Q psy37            53 ACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        53 ~~v~~yG~tgSGKT~Tl   69 (279)
                      ..|+..|++|+|||.|+
T Consensus        11 ~vi~lvGp~GvGKTTTi   27 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTA   27 (207)
T ss_dssp             EEEEEECCTTTTHHHHH
T ss_pred             cEEEEECCCCCCHHHHH
Confidence            34666899999999997

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=83.79  E-value=0.12  Score=41.92  Aligned_cols=18  Identities=33%  Similarity=0.412  Sum_probs=15.2

Q ss_pred             CeeEeeccCcCCCceeEe
Q psy37            52 NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl   69 (279)
                      -..|+.|||||+|||...
T Consensus        49 ~~~iLl~GPpG~GKT~lA   66 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIA   66 (309)
T ss_dssp             CCCEEEECCTTSSHHHHH
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            367888999999999865

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.66  E-value=0.23  Score=37.91  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=18.6

Q ss_pred             hccccCeeEeeccCcCCCceeEe
Q psy37            47 AFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        47 v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +-+|....++-||+.|+|||.+.
T Consensus        31 ~~~~~~~~~ll~Gp~G~GKTt~a   53 (224)
T d1sxjb2          31 AKDGNMPHMIISGMPGIGKTTSV   53 (224)
T ss_dssp             HHSCCCCCEEEECSTTSSHHHHH
T ss_pred             HHcCCCCeEEEECCCCCCchhhH
Confidence            34666667889999999999876

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.59  E-value=0.21  Score=45.40  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|.|.||+.-|.+|||||.+.
T Consensus       122 ~~~nQsIiisGeSGaGKTe~~  142 (712)
T d1d0xa2         122 DRQNQSLLITGESGAGKTENT  142 (712)
T ss_dssp             HTCCEEEEEECSTTSSHHHHH
T ss_pred             hCCCceEEEeCCCCCCHHHHH
Confidence            699999999999999999976

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.56  E-value=0.26  Score=37.39  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|..+++|.|  +++-.+||||||.+.
T Consensus        31 aip~il~g~d--vl~~A~TGsGKTla~   55 (207)
T d1t6na_          31 CIPQAILGMD--VLCQAKSGMGKTAVF   55 (207)
T ss_dssp             HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred             HHHHHHcCCC--eEEEecccccccccc
Confidence            4556689988  666779999999875

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=83.33  E-value=0.11  Score=43.27  Aligned_cols=46  Identities=50%  Similarity=0.639  Sum_probs=42.1

Q ss_pred             ccccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEeccc
Q psy37           101 QFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSK  146 (279)
Q Consensus       101 ~~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~  146 (279)
                      ..+++.++|+..+.+++.+++++|+.+++.+++.++|+++++.|..
T Consensus        90 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~  135 (362)
T d1v8ka_          90 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL  135 (362)
T ss_dssp             TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhccCceEEeeccCCCCCceeeeecC
Confidence            4467899999999999999999999999999999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.26  E-value=0.085  Score=38.45  Aligned_cols=16  Identities=44%  Similarity=0.613  Sum_probs=13.9

Q ss_pred             eEeeccCcCCCceeEe
Q psy37            54 CVFAYGQTGSGKTFTM   69 (279)
Q Consensus        54 ~v~~yG~tgSGKT~Tl   69 (279)
                      .|+-.|+.|+|||+++
T Consensus         3 ~v~ItG~~GtGKTtl~   18 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLI   18 (189)
T ss_dssp             CEEEESCCSSCHHHHH
T ss_pred             EEEEECCCCCcHHHHH
Confidence            4777899999999977

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.10  E-value=0.31  Score=36.82  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=19.4

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|..+++|.|  |++..+||||||...
T Consensus        33 aip~il~g~d--vl~~a~TGsGKTlay   57 (206)
T d1veca_          33 SIPIALSGRD--ILARAKNGTGKSGAY   57 (206)
T ss_dssp             HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred             HHHHHHcCCC--EEeeccCcccccccc
Confidence            4556689988  556679999999875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.08  E-value=0.25  Score=38.03  Aligned_cols=28  Identities=32%  Similarity=0.432  Sum_probs=23.0

Q ss_pred             HHHHHhccc---cCeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEG---YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G---~n~~v~~yG~tgSGKT~Tl   69 (279)
                      |-+|.++.|   ....++.+|++|||||.-.
T Consensus        23 ~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~   53 (254)
T d1pzna2          23 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA   53 (254)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred             HHHHHhhcCCccCCEEEEEEcCCCCCHHHHH
Confidence            667888876   4668999999999998753

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=82.98  E-value=0.21  Score=46.01  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=24.7

Q ss_pred             HHHHHhHHHHHHHhccccCeeEeeccCcCCCceeE
Q psy37            34 QVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFT   68 (279)
Q Consensus        34 ~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~T   68 (279)
                      .||...-...-.-+-.|.|.||+.-|.+|||||.+
T Consensus       103 HiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~  137 (789)
T d1kk8a2         103 HLFSVADNAYQNMVTDRENQSCLITGESGAGKTEN  137 (789)
T ss_dssp             CHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHH
T ss_pred             cHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH
Confidence            44544432222223479999999999999999977

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=82.66  E-value=0.45  Score=36.85  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=28.4

Q ss_pred             CCCCCCHHHHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            26 SPQFASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        26 f~~~~~q~~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      |....+|..+.+    .+.+++-.+.....+-+|.+|||||-..
T Consensus        54 ~~lt~~Q~~~~~----~i~~~~~~~~~~~~LL~GdvGsGKT~V~   93 (233)
T d2eyqa3          54 FETTPDQAQAIN----AVLSDMCQPLAMDRLVCGDVGFGKTEVA   93 (233)
T ss_dssp             SCCCHHHHHHHH----HHHHHHHSSSCCEEEEECCCCTTTHHHH
T ss_pred             cccchhHHHHHH----HHHHHHhccCccCeEEEcCCCCCcHHHH
Confidence            334445666554    4455667788888999999999998653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=82.33  E-value=0.12  Score=42.37  Aligned_cols=28  Identities=36%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             HHHHHhcc-ccCeeEeeccCcCCCceeEecC
Q psy37            42 DVVDAAFE-GYNACVFAYGQTGSGKTFTMMG   71 (279)
Q Consensus        42 ~lv~~v~~-G~n~~v~~yG~tgSGKT~Tl~G   71 (279)
                      .++..++. |.|  |+..|+||||||.+|..
T Consensus       157 ~~l~~~v~~~~n--ili~G~tgSGKTT~l~a  185 (323)
T d1g6oa_         157 SAIKDGIAIGKN--VIVCGGTGSGKTTYIKS  185 (323)
T ss_dssp             HHHHHHHHHTCC--EEEEESTTSSHHHHHHH
T ss_pred             HHHHHHHHhCCC--EEEEeeccccchHHHHH
Confidence            45555554 444  67799999999998843

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.31  E-value=0.23  Score=45.75  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=25.4

Q ss_pred             HHHHHhHHHHHHHhccccCeeEeeccCcCCCceeEe
Q psy37            34 QVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        34 ~vy~~~~~~lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +||.-.-...-.-+-.|.|.||+.-|.+|||||.+.
T Consensus       105 HifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~  140 (794)
T d2mysa2         105 HIFSISDNAYQFMLTDRENQSILITGESGAGKTVNT  140 (794)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Confidence            566555432222233799999999999999999654

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=82.28  E-value=0.16  Score=38.21  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=18.2

Q ss_pred             HHHhccccCeeEeeccCcCCCceeEe
Q psy37            44 VDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        44 v~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      |+.+++|.|.  +.--+||||||...
T Consensus        34 i~~~l~g~~v--lv~apTGsGKT~~~   57 (206)
T d1oywa2          34 IDTVLSGRDC--LVVMPTGGGKSLCY   57 (206)
T ss_dssp             HHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred             HHHHHcCCCE--EEEcCCCCCCcchh
Confidence            5567889875  45568999999764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.16  E-value=0.23  Score=38.58  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=20.8

Q ss_pred             HHHhccccCeeEeeccCcCCCceeEec
Q psy37            44 VDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        44 v~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      ++.+.+....+|+.||+.|+|||..+.
T Consensus        21 l~~l~~~~~~~i~i~G~~G~GKTsLl~   47 (283)
T d2fnaa2          21 IEKLKGLRAPITLVLGLRRTGKSSIIK   47 (283)
T ss_dssp             HHHHHHTCSSEEEEEESTTSSHHHHHH
T ss_pred             HHHHHhccCCEEEEEcCCCCcHHHHHH
Confidence            344455566789999999999998773

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.06  E-value=0.18  Score=38.18  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=17.6

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEec
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTMM   70 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl~   70 (279)
                      .|+.++++.++.|  .++||+|||+++.
T Consensus        78 av~~~~~~~~~ll--~~~tG~GKT~~a~  103 (206)
T d2fz4a1          78 ALERWLVDKRGCI--VLPTGSGKTHVAM  103 (206)
T ss_dssp             HHHHHTTTSEEEE--EESSSTTHHHHHH
T ss_pred             HHHHHHhCCCcEE--EeCCCCCceehHH
Confidence            4556666655443  3589999998764

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=81.86  E-value=0.27  Score=44.46  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=20.1

Q ss_pred             ccccCeeEeeccCcCCCceeEe
Q psy37            48 FEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        48 ~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      -.+.|.||+.-|.+|||||.+.
T Consensus        82 ~~~~~QsIiisGeSGsGKTe~~  103 (684)
T d1lkxa_          82 QSQENQCVIISGESGAGKTEAS  103 (684)
T ss_dssp             HHCCCEEEEEECSTTSSHHHHH
T ss_pred             HcCCCeEEEEEcCCCCCHHHHH
Confidence            3689999999999999999976

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.78  E-value=0.27  Score=44.66  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=19.7

Q ss_pred             cccCeeEeeccCcCCCceeEe
Q psy37            49 EGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        49 ~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .+.|.||+.-|.+|||||.+.
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~  108 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENT  108 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHH
Confidence            699999999999999999985

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=81.62  E-value=0.28  Score=44.76  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             ccccCeeEeeccCcCCCceeEe
Q psy37            48 FEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        48 ~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      -.|.|.||+.-|.+|||||.+.
T Consensus        90 ~~~~~Q~IiisGeSGsGKTe~~  111 (730)
T d1w7ja2          90 RDERNQSIIVSGESGAGKTVSA  111 (730)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHH
T ss_pred             HhCCCeEEEEEeCCCCCHHHHH
Confidence            3699999999999999999976

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.13  E-value=0.36  Score=37.05  Aligned_cols=25  Identities=36%  Similarity=0.585  Sum_probs=19.2

Q ss_pred             HHHHhccccCeeEeeccCcCCCceeEe
Q psy37            43 VVDAAFEGYNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        43 lv~~v~~G~n~~v~~yG~tgSGKT~Tl   69 (279)
                      .|..+++|.|  |++-.+||||||.+-
T Consensus        47 aIp~il~g~d--vi~~a~TGSGKTlay   71 (222)
T d2j0sa1          47 AIKQIIKGRD--VIAQSQSGTGKTATF   71 (222)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred             HHHHHHCCCC--eEEEcCcchhhhhhh
Confidence            4556678988  555779999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=81.07  E-value=0.16  Score=43.44  Aligned_cols=18  Identities=33%  Similarity=0.412  Sum_probs=15.4

Q ss_pred             CeeEeeccCcCCCceeEe
Q psy37            52 NACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        52 n~~v~~yG~tgSGKT~Tl   69 (279)
                      ...|+..||||+|||+-.
T Consensus        49 ksNILliGPTGvGKTlLA   66 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIA   66 (443)
T ss_dssp             CCCEEEECCTTSSHHHHH
T ss_pred             cccEEEECCCCCCHHHHH
Confidence            347999999999999854

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=81.06  E-value=0.32  Score=37.32  Aligned_cols=28  Identities=32%  Similarity=0.515  Sum_probs=23.5

Q ss_pred             HHHHHhccc---cCeeEeeccCcCCCceeEe
Q psy37            42 DVVDAAFEG---YNACVFAYGQTGSGKTFTM   69 (279)
Q Consensus        42 ~lv~~v~~G---~n~~v~~yG~tgSGKT~Tl   69 (279)
                      +-+|.++.|   ....++.||.+|+|||.-+
T Consensus        13 ~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~   43 (242)
T d1tf7a2          13 VRLDEMCGGGFFKDSIILATGATGTGKTLLV   43 (242)
T ss_dssp             HHHHHHTTSSEESSCEEEEEECTTSSHHHHH
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHH
Confidence            568888986   6678999999999998755

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.03  E-value=0.24  Score=40.41  Aligned_cols=46  Identities=54%  Similarity=0.798  Sum_probs=41.9

Q ss_pred             cccHHHHHhhhchhhHhhhhhccceeeeeccccCCCceEEEecccc
Q psy37           102 FASQEQVFNDLGMDVVDAAFEGYNACVFAYGQTGSGKTFTMMGSKA  147 (279)
Q Consensus       102 ~~s~~ei~~~~~~~l~~s~~e~~~~~v~dl~~~~~~~~~~~~g~~~  147 (279)
                      ..++.++|+..+.+++.+++++|+.+++.+++.++|+++++.|...
T Consensus        53 ~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~~G~~~   98 (323)
T d1bg2a_          53 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH   98 (323)
T ss_dssp             TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCCCCceeccCCcc
Confidence            3578999999999999999999999999999999999999998554