Psyllid ID: psy3800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQMVMYNGGE
Secondary Structure (PSIPRED)
cccccccHHHHHHcccHHHHHHHHcccccccccEEEcccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcHHHHHHccHHHHHHHHHccccccccEEEccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHEcccEEEEcccc
Coil and Loop (DISEMBL)
MVWREIIDGAihraagpqlkeecrtlngcetgdakitagynlpaklpinakhvihtvgpvgekpALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQMVMYNGGE
Flexible Loop (DISEMBL)
MVWREIidgaihraagpqlkeECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVmkqnnlrsidilkgrqqkwryrlcmtfsrnilirgqmvmyngge
Low Complexity Region (SEG)
MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQMVMYNGGE
Disordered region (IsUnstruct)
**WREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQMVMY****
Disordered Region (DISOPRED)
MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQMVMYNGG*
Disordered Region (DISEMBL)
MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQMVMYNGGE
Disordered Region (DISPRO)
MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQMVMYNGG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQMVMYNGGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q3UYG8	475	O-acetyl-ADP-ribose deace	yes	N/A	0.556	0.155	0.569	9e-20
Q8Q0F9	187	Macro domain-containing p	yes	N/A	0.556	0.395	0.576	4e-19
A1Z1Q3	448	O-acetyl-ADP-ribose deace	no	N/A	0.556	0.165	0.534	2e-18
Q8TQD0	195	Macro domain-containing p	yes	N/A	0.548	0.374	0.558	2e-18
Q985D2	176	Macro domain-containing p	yes	N/A	0.556	0.420	0.564	3e-18
Q8Y2K1	171	Macro domain-containing p	yes	N/A	0.556	0.432	0.505	3e-17
Q8K4G6	258	O-acetyl-ADP-ribose deace	no	N/A	0.556	0.286	0.523	4e-17
Q9BQ69	325	O-acetyl-ADP-ribose deace	no	N/A	0.556	0.227	0.511	5e-17
Q2KHU5	325	O-acetyl-ADP-ribose deace	yes	N/A	0.548	0.224	0.529	6e-17
Q922B1	323	O-acetyl-ADP-ribose deace	no	N/A	0.556	0.229	0.511	2e-16

>sp|Q3UYG8|MACD2_MOUSE O-acetyl-ADP-ribose deacetylase MACROD2 OS=Mus musculus GN=Macrod2 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/86 (56%), Positives = 59/86 (68%), Gaps = 12/86 (13%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DG IHRAAGP L  ECR LNGCETG AKIT GY+LP      AK+VIHTVGP+      
Sbjct: 101 VDGCIHRAAGPCLLAECRNLNGCETGHAKITCGYDLP------AKYVIHTVGPIARGHIN 154

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
           G     L + YQ SL+++K+NNLRS+
Sbjct: 155 GSHKEDLANCYQSSLKLVKENNLRSV 180

Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -

>sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_0177 PE=4 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 62/85 (72%), Gaps = 11/85 (12%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV---GEK 63
           +DGAIHRAAGP L EEC+TLNGC TG+AKIT+GY LP      AK++IHTVGPV   GEK
Sbjct: 50  VDGAIHRAAGPALLEECKTLNGCPTGEAKITSGYLLP------AKYIIHTVGPVWQGGEK 103

Query: 64  --PALLKSAYQRSLEVMKQNNLRSI 86
               LL S Y++SLE+ +   +++I
Sbjct: 104 GEDELLASCYRKSLELARDYKIKTI 128

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

>sp|A1Z1Q3|MACD2_HUMAN O-acetyl-ADP-ribose deacetylase MACROD2 OS=Homo sapiens GN=MACROD2 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/86 (53%), Positives = 59/86 (68%), Gaps = 12/86 (13%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DG IHRAAGP L  ECR LNGC+TG AKIT GY+LP      AK+VIHTVGP+      
Sbjct: 101 VDGCIHRAAGPCLLAECRNLNGCDTGHAKITCGYDLP------AKYVIHTVGPIARGHIN 154

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
           G     L + Y+ SL+++K+NN+RS+
Sbjct: 155 GSHKEDLANCYKSSLKLVKENNIRSV 180

Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_1614 PE=4 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 13/86 (15%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DGAIHRAAGP L EECRTLNGC TG+AKIT GY LP      AK+VIHTVGP+      
Sbjct: 58  VDGAIHRAAGPGLLEECRTLNGCPTGEAKITKGYLLP------AKYVIHTVGPIWQEGTK 111

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
           GE    L S Y++SLE+ ++ ++++I
Sbjct: 112 GED-EFLASCYRKSLELARKYDVKTI 136

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

>sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=Rhizobium loti (strain MAFF303099) GN=mll7730 PE=4 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 59/85 (69%), Gaps = 11/85 (12%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV----GE 62
           +DGAIHRAAG +L+ ECR LNGC+ GDAKIT GY LP      A+H+IHTVGPV    G+
Sbjct: 37  VDGAIHRAAGRELEVECRMLNGCKVGDAKITKGYKLP------ARHIIHTVGPVWQGGGK 90

Query: 63  KPA-LLKSAYQRSLEVMKQNNLRSI 86
             A LL S Y+ SLE+   N+ RS+
Sbjct: 91  GEAELLASCYRSSLELAAANDCRSV 115

Rhizobium loti (strain MAFF303099) (taxid: 266835)

>sp|Q8Y2K1|Y334_RALSO Macro domain-containing protein RSc0334 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0334 PE=4 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 11/85 (12%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-----G 61
           +DGAIHRAAGP+L E CR L+GC TG AKIT G+ LP      A+++IHTVGP+      
Sbjct: 37  VDGAIHRAAGPELLEACRALHGCRTGQAKITPGFLLP------ARYIIHTVGPIWRGGRQ 90

Query: 62  EKPALLKSAYQRSLEVMKQNNLRSI 86
           ++ ALL + Y+ SL + KQ+++R+I
Sbjct: 91  DEAALLAACYRNSLALAKQHDVRTI 115

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q8K4G6|MACD1_RAT O-acetyl-ADP-ribose deacetylase MACROD1 (Fragment) OS=Rattus norvegicus GN=Macrod1 PE=2 SV=2

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 12/86 (13%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DG IHRAAG  L +ECRTL  CETG AKIT GY LP      AKHVIHTVGP+      
Sbjct: 116 VDGCIHRAAGSLLTDECRTLQNCETGKAKITCGYRLP------AKHVIHTVGPIAVGQPT 169

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
             + A L+S Y  SL+++ ++ LRS+
Sbjct: 170 ASQAAELRSCYLSSLDLLLEHRLRSV 195

Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins. Plays a role in estrogen signaling. Binds to androgen receptor (AR) and amplifies the transactivation function of AR in response to androgen.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9BQ69|MACD1_HUMAN O-acetyl-ADP-ribose deacetylase MACROD1 OS=Homo sapiens GN=MACROD1 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 12/86 (13%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DG IHRAAGP L +ECRTL  C+TG AKIT GY LP      AK+VIHTVGP+      
Sbjct: 183 VDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLP------AKYVIHTVGPIAYGEPS 236

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
             + A L+S Y  SL+++ ++ LRS+
Sbjct: 237 ASQAAELRSCYLSSLDLLLEHRLRSV 262

Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins. Plays a role in estrogen signaling. Binds to androgen receptor (AR) and amplifies the transactivation function of AR in response to androgen. May play an important role in carcinogenesis and/or progression of hormone-dependent cancers by feed-forward mechanism that activates ESR1 transactivation. Could be an ESR1 coactivator, providing a positive feedback regulatory loop for ESR1 signal transduction. Could be involved in invasive growth by down-regulating CDH1 in endometrial cancer cells. Enhances ESR1-mediated transcription activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q2KHU5|MACD1_BOVIN O-acetyl-ADP-ribose deacetylase MACROD1 OS=Bos taurus GN=MACROD1 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 12/85 (14%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DG IHRAAGP L +ECRTL  CETG AKIT GY LP      AK+VIHTVGP+      
Sbjct: 183 VDGCIHRAAGPLLTDECRTLQNCETGKAKITCGYRLP------AKYVIHTVGPIAHGEPS 236

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRS 85
             + A L+S Y  SL+++ ++ LRS
Sbjct: 237 ASQAAELRSCYLSSLDLLLEHRLRS 261

Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins. Plays a role in estrogen signaling. Binds to androgen receptor (AR) and amplifies the transactivation function of AR in response to androgen.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q922B1|MACD1_MOUSE O-acetyl-ADP-ribose deacetylase MACROD1 OS=Mus musculus GN=Macrod1 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 12/86 (13%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DG IHRAAG  L +ECRTL  CETG AKIT GY LP      AK+VIHTVGP+      
Sbjct: 181 VDGCIHRAAGSLLTDECRTLQNCETGKAKITCGYRLP------AKYVIHTVGPIAVGQPT 234

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
             + A L+S Y  SL+++ ++ LRS+
Sbjct: 235 ASQAAELRSCYLSSLDLLLEHRLRSV 260

Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins. Plays a role in estrogen signaling. Binds to androgen receptor (AR) and amplifies the transactivation function of AR in response to androgen.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
384500015	202	hypothetical protein RO3G_15217 [Rhizopu	0.556	0.366	0.65	2e-21
404493680	175	O-acetyl-ADP-ribose deacetylase [Pelobac	0.556	0.422	0.619	1e-20
39995633	173	O-acetyl-ADP-ribose deacetylase [Geobact	0.548	0.421	0.662	1e-20
307169853	228	MACRO domain-containing protein 2 [Campo	0.556	0.324	0.625	3e-20
295425379	170	RNase III regulator YmdB [Lactobacillus	0.563	0.441	0.597	4e-20
336370629	220	hypothetical protein SERLA73DRAFT_108208	0.556	0.336	0.593	4e-20
164686201	182	hypothetical protein CLOBAR_02639 [Clost	0.556	0.406	0.611	5e-20
350419095	271	PREDICTED: MACRO domain-containing prote	0.556	0.273	0.625	6e-20
328791543	270	PREDICTED: MACRO domain-containing prote	0.556	0.274	0.625	6e-20
332029791	229	MACRO domain-containing protein 2 [Acrom	0.556	0.323	0.6	7e-20

>gi|384500015|gb|EIE90506.1| hypothetical protein RO3G_15217 [Rhizopus delemar RA 99-880]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 60/80 (75%), Gaps = 6/80 (7%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           +DGAIHRAAG +L EECRTLNGC  GDAKIT GY LP      AK+VIHTVGP  EKP +
Sbjct: 63  VDGAIHRAAGKELLEECRTLNGCVEGDAKITKGYQLP------AKYVIHTVGPKSEKPDV 116

Query: 67  LKSAYQRSLEVMKQNNLRSI 86
           LKS Y+RSL++M +  L SI
Sbjct: 117 LKSCYERSLQLMDERGLSSI 136

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|404493680|ref|YP_006717786.1| O-acetyl-ADP-ribose deacetylase [Pelobacter carbinolicus DSM 2380] gi|77545715|gb|ABA89277.1| O-acetyl-ADP-ribose deacetylase [Pelobacter carbinolicus DSM 2380]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 62/84 (73%), Gaps = 10/84 (11%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV----GE 62
           +DGAIHRAAGP+L EECR+LNGCETGDAKIT GY+LP      A+HVIHTVGPV      
Sbjct: 38  VDGAIHRAAGPRLVEECRSLNGCETGDAKITDGYDLP------ARHVIHTVGPVYRGRPN 91

Query: 63  KPALLKSAYQRSLEVMKQNNLRSI 86
            P LL S Y+ SLE+ +Q+ L S+
Sbjct: 92  DPKLLASCYRTSLELARQHGLTSV 115

Source: Pelobacter carbinolicus DSM 2380

Species: Pelobacter carbinolicus

Genus: Pelobacter

Family: Pelobacteraceae

Order: Desulfuromonadales

Class: Deltaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|39995633|ref|NP_951584.1| O-acetyl-ADP-ribose deacetylase [Geobacter sulfurreducens PCA] gi|409911091|ref|YP_006889556.1| O-acetyl-ADP-ribose deacetylase [Geobacter sulfurreducens KN400] gi|39982396|gb|AAR33857.1| O-acetyl-ADP-ribose deacetylase [Geobacter sulfurreducens PCA] gi|298504655|gb|ADI83378.1| O-acetyl-ADP-ribose deacetylase [Geobacter sulfurreducens KN400]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 61/86 (70%), Gaps = 13/86 (15%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DGAIHRAAGP+L  ECRTLNGC TGDAKITAGY LP      AKHVIHTVGPV      
Sbjct: 34  VDGAIHRAAGPELLAECRTLNGCATGDAKITAGYRLP------AKHVIHTVGPVWHGGAR 87

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
           GE P LL+S Y+RS EV     LRSI
Sbjct: 88  GE-PDLLRSCYRRSFEVAHGAGLRSI 112

Source: Geobacter sulfurreducens PCA

Species: Geobacter sulfurreducens

Genus: Geobacter

Family: Geobacteraceae

Order: Desulfuromonadales

Class: Deltaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|307169853|gb|EFN62362.1| MACRO domain-containing protein 2 [Camponotus floridanus]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 59/80 (73%), Gaps = 6/80 (7%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           +DGAIHRAAGP LK+EC TL GC  G+AKIT GY LP      AK+VIHTVGP GEKP  
Sbjct: 93  VDGAIHRAAGPNLKKECATLGGCRVGEAKITGGYMLP------AKYVIHTVGPQGEKPEK 146

Query: 67  LKSAYQRSLEVMKQNNLRSI 86
           L+  Y+ SL V K+N+LR+I
Sbjct: 147 LRECYENSLTVAKENHLRTI 166

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295425379|ref|ZP_06818079.1| RNase III regulator YmdB [Lactobacillus amylolyticus DSM 11664] gi|295064931|gb|EFG55839.1| RNase III regulator YmdB [Lactobacillus amylolyticus DSM 11664]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 62/87 (71%), Gaps = 12/87 (13%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DGAIH AAGPQL  ECRTL+GC+TG+AKIT GYNLP      AKHVIHTVGP+      
Sbjct: 33  VDGAIHAAAGPQLLAECRTLHGCDTGEAKITKGYNLP------AKHVIHTVGPIYRFHSP 86

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSIL 87
            E   LL + YQ SL++ K+NNL SI+
Sbjct: 87  EEDAKLLAACYQNSLDLAKKNNLHSII 113

Source: Lactobacillus amylolyticus DSM 11664

Species: Lactobacillus amylolyticus

Genus: Lactobacillus

Family: Lactobacillaceae

Order: Lactobacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|336370629|gb|EGN98969.1| hypothetical protein SERLA73DRAFT_108208 [Serpula lacrymans var. lacrymans S7.3] gi|336383408|gb|EGO24557.1| hypothetical protein SERLADRAFT_438166 [Serpula lacrymans var. lacrymans S7.9]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 61/86 (70%), Gaps = 12/86 (13%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGP------V 60
           +DGAIHRAAGP+L EECRTLNGCETGDAKIT GYNLP      ++HVIHTVGP      V
Sbjct: 70  VDGAIHRAAGPELLEECRTLNGCETGDAKITKGYNLP------SRHVIHTVGPVYSSSDV 123

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
             K   L S Y++S+++   NNL+ I
Sbjct: 124 SRKADELASCYRKSMQLAADNNLKHI 149

Source: Serpula lacrymans var. lacrymans S7.3

Species: Serpula lacrymans

Genus: Serpula

Family: Serpulaceae

Order: Boletales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|164686201|ref|ZP_02210231.1| hypothetical protein CLOBAR_02639 [Clostridium bartlettii DSM 16795] gi|164601803|gb|EDQ95268.1| macro domain protein [Clostridium bartlettii DSM 16795]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 63/85 (74%), Gaps = 11/85 (12%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-----G 61
           +DGAIHR AG +L EEC+TL+GCETGDAKIT GYNLP      AK+VIHTVGP+      
Sbjct: 40  VDGAIHRTAGRELLEECKTLHGCETGDAKITKGYNLP------AKYVIHTVGPIYKGGNS 93

Query: 62  EKPALLKSAYQRSLEVMKQNNLRSI 86
            +  LL S Y+RSLEV+ +NNLR+I
Sbjct: 94  NEDRLLYSCYERSLEVLIENNLRTI 118

Source: Clostridium bartlettii DSM 16795

Species: [Clostridium] bartlettii

Family: Peptostreptococcaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|350419095|ref|XP_003492069.1| PREDICTED: MACRO domain-containing protein 2-like isoform 2 [Bombus impatiens]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 56/80 (70%), Gaps = 6/80 (7%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           +DGAIH+AAGP LK+EC TL GC  G+AKIT  Y LP      AKHVIHTVGP GEKP  
Sbjct: 135 VDGAIHKAAGPNLKKECATLGGCRVGEAKITGAYMLP------AKHVIHTVGPQGEKPEK 188

Query: 67  LKSAYQRSLEVMKQNNLRSI 86
           LK  Y+ SL V K N LR+I
Sbjct: 189 LKECYENSLTVAKANELRTI 208

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791543|ref|XP_623181.2| PREDICTED: MACRO domain-containing protein 2-like isoform 2 [Apis mellifera]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 58/80 (72%), Gaps = 6/80 (7%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           +DGAIH+AAGP LK+EC TL GC  G+AKIT GY LP      AK+VIHTVGP GEKP  
Sbjct: 134 VDGAIHKAAGPNLKKECATLGGCHVGEAKITGGYMLP------AKYVIHTVGPQGEKPEK 187

Query: 67  LKSAYQRSLEVMKQNNLRSI 86
           LK  Y+ SL V K+N LR+I
Sbjct: 188 LKECYENSLIVAKENQLRTI 207

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029791|gb|EGI69660.1| MACRO domain-containing protein 2 [Acromyrmex echinatior]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 59/80 (73%), Gaps = 6/80 (7%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           +DGAIHRAAGP L++EC TL GC+ G+AKIT GY LP      AK++IHTVGP GEKP  
Sbjct: 93  VDGAIHRAAGPYLRKECATLKGCKVGEAKITGGYELP------AKYIIHTVGPQGEKPDK 146

Query: 67  LKSAYQRSLEVMKQNNLRSI 86
           LK  Y+ SL + K+N LR+I
Sbjct: 147 LKECYENSLTLAKENRLRTI 166

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
UNIPROTKB|Q74FT0	173	ymdB "O-acetyl-ADP-ribose deac	0.556	0.427	0.658	2.4e-21
TIGR_CMR|GSU_0526	173	GSU_0526 "conserved hypothetic	0.556	0.427	0.658	2.4e-21
MGI|MGI:1920149	475	Macrod2 "MACRO domain containi	0.556	0.155	0.569	3.3e-18
RGD|1591318	531	Macrod2 "MACRO domain containi	0.556	0.139	0.569	4.3e-18
UNIPROTKB|E2RAG4	324	MACROD1 "Uncharacterized prote	0.548	0.225	0.564	9.5e-18
UNIPROTKB|A1Z1Q3	448	MACROD2 "O-acetyl-ADP-ribose d	0.556	0.165	0.534	2.7e-17
ZFIN|ZDB-GENE-040426-1490	452	macrod2 "MACRO domain containi	0.556	0.163	0.569	4.5e-17
UNIPROTKB|Q2KHU5	325	MACROD1 "O-acetyl-ADP-ribose d	0.548	0.224	0.552	4.9e-17
UNIPROTKB|E7EBY5	325	MACROD1 "MACRO domain containi	0.548	0.224	0.552	4.9e-17
ASPGD|ASPL0000035716	374	AN3153 [Emericella nidulans (t	0.556	0.197	0.550	5e-17

UNIPROTKB|Q74FT0 ymdB "O-acetyl-ADP-ribose deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 56/85 (65%), Positives = 61/85 (71%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV---GEK 63
             +DGAIHRAAGP+L  ECRTLNGC TGDAKITAGY LPAK      HVIHTVGPV   G +
Sbjct:    34 VDGAIHRAAGPELLAECRTLNGCATGDAKITAGYRLPAK------HVIHTVGPVWHGGAR 87

Query:    64 --PALLKSAYQRSLEVMKQNNLRSI 86
               P LL+S Y+RS EV     LRSI
Sbjct:    88 GEPDLLRSCYRRSFEVAHGAGLRSI 112

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0526 GSU_0526 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 56/85 (65%), Positives = 61/85 (71%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV---GEK 63
             +DGAIHRAAGP+L  ECRTLNGC TGDAKITAGY LPAK      HVIHTVGPV   G +
Sbjct:    34 VDGAIHRAAGPELLAECRTLNGCATGDAKITAGYRLPAK------HVIHTVGPVWHGGAR 87

Query:    64 --PALLKSAYQRSLEVMKQNNLRSI 86
               P LL+S Y+RS EV     LRSI
Sbjct:    88 GEPDLLRSCYRRSFEVAHGAGLRSI 112

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1920149 Macrod2 "MACRO domain containing 2" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 49/86 (56%), Positives = 59/86 (68%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
             +DG IHRAAGP L  ECR LNGCETG AKIT GY+LPAK      +VIHTVGP+      
Sbjct:   101 VDGCIHRAAGPCLLAECRNLNGCETGHAKITCGYDLPAK------YVIHTVGPIARGHIN 154

Query:    61 GEKPALLKSAYQRSLEVMKQNNLRSI 86
             G     L + YQ SL+++K+NNLRS+
Sbjct:   155 GSHKEDLANCYQSSLKLVKENNLRSV 180

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019213 "deacetylase activity" evidence=ISO

GO:0042278 "purine nucleoside metabolic process" evidence=ISO

RGD|1591318 Macrod2 "MACRO domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 227 (85.0 bits), Expect = 4.3e-18, P = 4.3e-18
 Identities = 49/86 (56%), Positives = 59/86 (68%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
             +DG IHRAAGP L  ECR LNGCETG AKIT GY+LPAK      +VIHTVGP+      
Sbjct:   156 VDGCIHRAAGPCLLAECRNLNGCETGHAKITCGYDLPAK------YVIHTVGPIARGHIN 209

Query:    61 GEKPALLKSAYQRSLEVMKQNNLRSI 86
             G     L + YQ SL+++K+NNLRS+
Sbjct:   210 GSHKEDLANCYQSSLKLVKENNLRSV 235

GO:0019213 "deacetylase activity" evidence=ISO

GO:0042278 "purine nucleoside metabolic process" evidence=ISO

UNIPROTKB|E2RAG4 MACROD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 48/85 (56%), Positives = 58/85 (68%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV--GE-- 62
             +DG IHRAAGP L +ECRTL  CETG AKIT GY LPAK      HVIHTVGP+  GE  
Sbjct:   183 VDGCIHRAAGPLLTDECRTLQSCETGKAKITGGYRLPAK------HVIHTVGPIAHGEPS 236

Query:    63 --KPALLKSAYQRSLEVMKQNNLRS 85
               + A L+S Y  SL+++ ++ LRS
Sbjct:   237 ASQAAELRSCYLSSLDLLLEHRLRS 261

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|A1Z1Q3 MACROD2 "O-acetyl-ADP-ribose deacetylase MACROD2" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 46/86 (53%), Positives = 59/86 (68%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
             +DG IHRAAGP L  ECR LNGC+TG AKIT GY+LPAK      +VIHTVGP+      
Sbjct:   101 VDGCIHRAAGPCLLAECRNLNGCDTGHAKITCGYDLPAK------YVIHTVGPIARGHIN 154

Query:    61 GEKPALLKSAYQRSLEVMKQNNLRSI 86
             G     L + Y+ SL+++K+NN+RS+
Sbjct:   155 GSHKEDLANCYKSSLKLVKENNIRSV 180

GO:0007420 "brain development" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0042278 "purine nucleoside metabolic process" evidence=IDA

GO:0019213 "deacetylase activity" evidence=IDA

ZFIN|ZDB-GENE-040426-1490 macrod2 "MACRO domain containing 2" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 49/86 (56%), Positives = 59/86 (68%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGP-----VG 61
             +DG IHRAAG  L EEC +LNGC+TG AKIT GY+LPAK      +VIHTVGP     VG
Sbjct:    92 VDGCIHRAAGHLLYEECHSLNGCDTGKAKITCGYDLPAK------YVIHTVGPIARGNVG 145

Query:    62 EKPAL-LKSAYQRSLEVMKQNNLRSI 86
             +     L+S Y  SL++MK NNLRS+
Sbjct:   146 QSQRDDLESCYYSSLKLMKDNNLRSV 171

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2KHU5 MACROD1 "O-acetyl-ADP-ribose deacetylase MACROD1" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.9e-17, P = 4.9e-17
 Identities = 47/85 (55%), Positives = 58/85 (68%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV--GE-- 62
             +DG IHRAAGP L +ECRTL  CETG AKIT GY LPAK      +VIHTVGP+  GE  
Sbjct:   183 VDGCIHRAAGPLLTDECRTLQNCETGKAKITCGYRLPAK------YVIHTVGPIAHGEPS 236

Query:    63 --KPALLKSAYQRSLEVMKQNNLRS 85
               + A L+S Y  SL+++ ++ LRS
Sbjct:   237 ASQAAELRSCYLSSLDLLLEHRLRS 261

GO:0005739 "mitochondrion" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E7EBY5 MACROD1 "MACRO domain containing protein 1" [Sus scrofa (taxid:9823)]

 Score = 210 (79.0 bits), Expect = 4.9e-17, P = 4.9e-17
 Identities = 47/85 (55%), Positives = 58/85 (68%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV--GE-- 62
             +DG IHRAAGP L +ECRTL  CETG AKIT GY LPAK      +VIHTVGP+  GE  
Sbjct:   183 VDGCIHRAAGPLLTDECRTLQSCETGKAKITCGYRLPAK------YVIHTVGPIAHGEPS 236

Query:    63 --KPALLKSAYQRSLEVMKQNNLRS 85
               + A L+S Y  SL+++ ++ LRS
Sbjct:   237 ASQAAELRSCYLSSLDLLLEHRLRS 261

GO:0005739 "mitochondrion" evidence=IEA

ASPGD|ASPL0000035716 AN3153 [Emericella nidulans (taxid:162425)]

 Score = 213 (80.0 bits), Expect = 5.0e-17, P = 5.0e-17
 Identities = 49/89 (55%), Positives = 60/89 (67%)

Query:     7 IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
             +D AIH+AAGP L +ECRTLNGC+TGDAKIT  YNLP     N K +IHTVGP+      
Sbjct:    70 VDYAIHKAAGPDLLKECRTLNGCDTGDAKITNAYNLP-----N-KRIIHTVGPIYSDAMR 123

Query:    61 -G--EKPALLKSAYQRSLEVMKQNNLRSI 86
              G  E   LL+S Y+R LEV  +N ++SI
Sbjct:   124 RGKDEPERLLRSCYRRCLEVAVENEMKSI 152

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q985D2	Y7730_RHILO	No assigned EC number	0.5647	0.5563	0.4204	yes	N/A
Q8KAE4	Y2219_CHLTE	No assigned EC number	0.5348	0.5488	0.4244	yes	N/A
Q2KHU5	MACD1_BOVIN	3, ., 5, ., 1, ., -	0.5294	0.5488	0.2246	yes	N/A
Q3UYG8	MACD2_MOUSE	3, ., 5, ., 1, ., -	0.5697	0.5563	0.1557	yes	N/A
Q8Q0F9	Y177_METMA	No assigned EC number	0.5764	0.5563	0.3957	yes	N/A
Q8Y2K1	Y334_RALSO	No assigned EC number	0.5058	0.5563	0.4327	yes	N/A
Q9HXU7	Y3693_PSEAE	No assigned EC number	0.5232	0.5488	0.4219	yes	N/A
Q8TQD0	Y1614_METAC	No assigned EC number	0.5581	0.5488	0.3743	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
cd02908	165	cd02908, Macro_Appr_pase_like, Macro domain, Appr-	4e-41
pfam01661	117	pfam01661, Macro, Macro domain	7e-29
PRK00431	177	PRK00431, PRK00431, RNase III inhibitor; Provision	3e-28
cd02905	140	cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik	6e-20
PRK04143	264	PRK04143, PRK04143, hypothetical protein; Provisio	1e-19
cd02906	147	cd02906, Macro_1, Macro domain, Unknown family 1	5e-19
COG2110	179	COG2110, COG2110, Predicted phosphatase homologous	8e-17
smart00506	133	smart00506, A1pp, Appr-1"-p processing enzyme	1e-14
cd02749	147	cd02749, Macro, Macro domain, a high-affinity ADP-	2e-12
cd02907	175	cd02907, Macro_Af1521_BAL_like, Macro domain, Af15	5e-12
cd02903	137	cd02903, Macro_BAL_like, Macro domain, BAL_like fa	1e-08
cd03330	133	cd03330, Macro_2, Macro domain, Unknown family 2	1e-05

>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family

 Score =  133 bits (338), Expect = 4e-41
 Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 11/85 (12%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE---- 62
           +DGAIHRAAGP+L EECR L GC TG+A IT+GYNLP      AK+VIHTVGPV      
Sbjct: 31  VDGAIHRAAGPELLEECRELRGCPTGEAVITSGYNLP------AKYVIHTVGPVWRGGQH 84

Query: 63  -KPALLKSAYQRSLEVMKQNNLRSI 86
            +  LL S Y+ SLE+ ++N LRSI
Sbjct: 85  NEAELLASCYRNSLELARENGLRSI 109

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165

>gnl|CDD|216634 pfam01661, Macro, Macro domain

 Score =  101 bits (253), Expect = 7e-29
 Identities = 43/89 (48%), Positives = 55/89 (61%), Gaps = 15/89 (16%)

Query: 7  IDGAIHRAAGPQLKEECRTL---NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-- 61
          + GAIHRAAGP L EECR L    GC TG+A +T G NLP      AK+VIH VGP+   
Sbjct: 14 VAGAIHRAAGPALLEECRELKKQGGCPTGEAVVTPGGNLP------AKYVIHAVGPIWRH 67

Query: 62 ----EKPALLKSAYQRSLEVMKQNNLRSI 86
              E+  LL SAY+ +LE+  +  ++SI
Sbjct: 68 GGGEEEEELLASAYRNALELANELGIKSI 96

This domain is an ADP-ribose binding module. It is found in a number of otherwise unrelated proteins. It is found at the C-terminus of the macro-H2A histone protein. This domain is found in the non-structural proteins of several types of ssRNA viruses such as NSP3 from alphaviruses. This domain is also found on its own in a family of proteins from bacteria, archaebacteria, and eukaryotes. Length = 117

>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional

 Score =  101 bits (254), Expect = 3e-28
 Identities = 44/88 (50%), Positives = 53/88 (60%), Gaps = 15/88 (17%)

Query: 8   DGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPV--- 60
           DGAIHRAAGP++ EECR L      C TG+A IT+   LP      AK+VIHTVGPV   
Sbjct: 35  DGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLP------AKYVIHTVGPVWRG 88

Query: 61  --GEKPALLKSAYQRSLEVMKQNNLRSI 86
               +  LL SAY+ SL +  +  LRSI
Sbjct: 89  GEDNEAELLASAYRNSLRLAAELGLRSI 116

Length = 177

>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family

 Score = 79.0 bits (195), Expect = 6e-20
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 12/88 (13%)

Query: 11  IHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSA 70
           I   AG +L+EE +TL GC TG+AK+T GYNLP      A+ +IHTVGP           
Sbjct: 36  IFARAGSELREEIQTLGGCRTGEAKLTKGYNLP------ARFIIHTVGPK------YNVK 83

Query: 71  YQRSLEVMKQNNLRSILEVMKQNNLRSI 98
           Y+ + E    +  R++L++ K+  L SI
Sbjct: 84  YRTAAENALYSCYRNVLQLAKELGLESI 111

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal Sec14p-like lipid binding domain. It is specifically expressed in brain and testis. Length = 140

>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional

 Score = 81.2 bits (201), Expect = 1e-19
 Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 18/92 (19%)

Query: 7   IDGAIHRAAGPQLKEECRTL-----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGP-V 60
           ID AIH  AG QL+ +C  +         TG AKIT  YNLP      AK+VIHTVGP +
Sbjct: 119 IDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKITRAYNLP------AKYVIHTVGPII 172

Query: 61  GEKPA------LLKSAYQRSLEVMKQNNLRSI 86
            ++P       LL S Y+  L++ ++  L+SI
Sbjct: 173 RKQPVSPIRADLLASCYRSCLKLAEKAGLKSI 204

Length = 264

>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1

 Score = 77.1 bits (190), Expect = 5e-19
 Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 18/92 (19%)

Query: 7   IDGAIHRAAGPQLKEECRTL-----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG 61
           ID  IH  AGPQL++ C  L         TG AKIT GYNLP      AK+VIHTVGP+ 
Sbjct: 36  IDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITPGYNLP------AKYVIHTVGPII 89

Query: 62  EKPA-------LLKSAYQRSLEVMKQNNLRSI 86
           E+         LL   Y   L++ ++  L+SI
Sbjct: 90  ERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSI 121

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain. Length = 147

>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

 Score = 72.0 bits (177), Expect = 8e-17
 Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 17/91 (18%)

Query: 7   IDGAIHRAAGPQLKEECRTL------NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV 60
           + GAIHRAAGPQL+EEC  +           G+A IT    LP      AK+VIHTVGP 
Sbjct: 34  VAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLP------AKYVIHTVGPS 87

Query: 61  G-----EKPALLKSAYQRSLEVMKQNNLRSI 86
                 ++  LL +AY+ +L + K+  +RS+
Sbjct: 88  WRGGSKDEAELLAAAYRAALRLAKEAGVRSV 118

Length = 179

>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme

 Score = 65.4 bits (160), Expect = 1e-14
 Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 14/88 (15%)

Query: 7   IDGAIHRAAGPQL-KEECRTLNG--CETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-- 61
           + GAI RAAG  L KEE R L G  C  G A +T G NLPA      K+VIH VGP    
Sbjct: 31  VAGAIARAAGKALSKEEVRKLAGGECPVGTAVVTEGGNLPA------KYVIHAVGPRASG 84

Query: 62  ---EKPALLKSAYQRSLEVMKQNNLRSI 86
              E   LL++AY+  LE+  +  + S+
Sbjct: 85  HSKEGFELLENAYRNCLELAIELGITSV 112

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji). Length = 133

>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

 Score = 59.7 bits (145), Expect = 2e-12
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 14/89 (15%)

Query: 7   IDGAIHRAAGPQLKEECRTL---NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEK 63
           ++ AI + AG +L+EE + L      + G+A +T GYNL       AK++IH VGP   +
Sbjct: 32  VNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLD-----GAKYLIHIVGPKYNQ 86

Query: 64  ------PALLKSAYQRSLEVMKQNNLRSI 86
                   LLK+AY+  L+  ++  ++SI
Sbjct: 87  GNNKAAFELLKNAYENCLKEAEEKGIKSI 115

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Length = 147

>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family

 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 16/88 (18%)

Query: 9   GAIHRAAGPQLKEEC----RTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV---- 60
            AI +A GP+++EE     R      TG+  +T+   LP K      +VIH VGP     
Sbjct: 35  LAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTSAGKLPCK------YVIHAVGPRWSGG 88

Query: 61  --GEKPALLKSAYQRSLEVMKQNNLRSI 86
              E    LK A   SL   ++  LRSI
Sbjct: 89  EAEECVEKLKKAILNSLRKAEELGLRSI 116

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains of BAL (B-aggressive lymphoma) proteins which contain multiple macro domains. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 175

>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 10  AIHRAAGPQLKEECRTLN-GCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL-- 66
           AI R AGP+L++E      G   G   +T G NLP       K+V H V P     AL  
Sbjct: 36  AILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLP------CKYVYHVVLPNWSNGALKI 89

Query: 67  LKSAYQRSLEVMKQNNLRSI 86
           LK      LE  ++ +  SI
Sbjct: 90  LKDIVSECLEKCEELSYTSI 109

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 137

>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 9   GAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLK 68
           GAI RA G  ++ E         G+A IT   +LP      A++VIH      E+P    
Sbjct: 33  GAIKRAGGSVIEREAVRKAPIPVGEAVITGAGDLP------ARYVIHA--ATMEEPG--- 81

Query: 69  SAYQRSLEVMKQNNLRSILEVMKQNNLRSI 98
               RS E   +   R+ L +  +  + S+
Sbjct: 82  ----RSSEESVRKATRAALALADELGIESV 107

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
cd02904	186	Macro_H2A_like Macro domain, Macro_H2A_like family	100.0
cd02905	140	Macro_GDAP2_like Macro domain, GDAP2_like family.	100.0
PRK04143	264	hypothetical protein; Provisional	99.97
cd02906	147	Macro_1 Macro domain, Unknown family 1. The macro	99.97
cd02908	165	Macro_Appr_pase_like Macro domain, Appr-1"-pase_li	99.97
cd02903	137	Macro_BAL_like Macro domain, BAL_like family. The	99.96
PRK00431	177	RNase III inhibitor; Provisional	99.96
cd02907	175	Macro_Af1521_BAL_like Macro domain, Af1521- and BA	99.96
COG2110	179	Predicted phosphatase homologous to the C-terminal	99.94
cd03330	133	Macro_2 Macro domain, Unknown family 2. The macro	99.94
PF01661	118	Macro: Macro domain; InterPro: IPR002589 The Macro	99.94
KOG2633|consensus	200		99.9
cd02900	186	Macro_Appr_pase Macro domain, Appr-1"-pase family.	99.88
smart00506	133	A1pp Appr-1"-p processing enzyme. Function determi	99.87
cd02749	147	Macro Macro domain, a high-affinity ADP-ribose bin	99.86
PRK13341	725	recombination factor protein RarA/unknown domain f	99.83
cd02901	140	Macro_Poa1p_like Macro domain, Poa1p_like family.	99.65
PHA02595	154	tk.4 hypothetical protein; Provisional	99.38
PF14519	280	Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ	97.54
cd03331	152	Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam	97.45
PF10154	510	DUF2362: Uncharacterized conserved protein (DUF236	96.1
TIGR02452	266	conserved hypothetical protein TIGR02452. Members	87.68

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family

Probab=100.00  E-value=9.2e-34  Score=219.02  Aligned_cols=94  Identities=20%  Similarity=0.268  Sum_probs=88.7

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQR   73 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~   73 (133)
                      |..+|||++||+++||++|++||+++    +++++|++++|++|+|||      |||||+|||.|   +++++|++||++
T Consensus        45 L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~~~iT~a~~Lp~------k~VIHtVgP~~~~~~~~~~L~~~~~~  118 (186)
T cd02904          45 IDLKGEVGNALEKKGGKEFVEAVKELRKSNGPLEIAGAAVSQAHGLPA------KFVIHCHSPQWGSDKCEEQLEKTVKN  118 (186)
T ss_pred             cCCCCcHhHHHHHHcCHHHHHHHHHHHHhcCCCCCCCEEEccCCCCCC------CEEEEeCCCCCCCCchHHHHHHHHHH
Confidence            45789999999999999999999765    789999999999999999      99999999999   567899999999


Q ss_pred             HHHHHHHCCCcEEEEccccccccchHH
Q psy3800          74 SLEVMKQNNLRSILEVMKQNNLRSIDI  100 (133)
Q Consensus        74 ~L~~A~~~~~~SIAfPaigtG~~g~~~  100 (133)
                      ||++|++++++|||||+||||++|||.
T Consensus       119 ~L~~A~e~~~~SIAfPaIstG~~g~P~  145 (186)
T cd02904         119 CLAAAEDKKLKSIAFPSLPSGRNGFPK  145 (186)
T ss_pred             HHHHHHHcCCCEEEECCcccCCCCCCH
Confidence            999999999999999999999999983

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r

>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family

Probab=100.00  E-value=1.4e-33  Score=208.88  Aligned_cols=94  Identities=39%  Similarity=0.598  Sum_probs=89.0

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSAYQRS   74 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~y~~~   74 (133)
                      |..+|||++||+++||++|++||++.+++++|++++|++|+|||      |||||+|||.|      +.+++|++||+++
T Consensus        26 l~~~ggv~~aI~~aaG~~l~~e~~~~~~~~~G~~~~T~~~~L~~------k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~   99 (140)
T cd02905          26 LTDKNPISDKIFARAGSELREEIQTLGGCRTGEAKLTKGYNLPA------RFIIHTVGPKYNVKYRTAAENALYSCYRNV   99 (140)
T ss_pred             cCCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCcEEEecCCCCCc------cEEEEecCCccCCCCCcHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999      99999999999      2368999999999


Q ss_pred             HHHHHHCCCcEEEEccccccccchHH
Q psy3800          75 LEVMKQNNLRSILEVMKQNNLRSIDI  100 (133)
Q Consensus        75 L~~A~~~~~~SIAfPaigtG~~g~~~  100 (133)
                      |++|++++++|||||+||||++|||.
T Consensus       100 L~~a~~~~~~SIAfPai~tG~~gfP~  125 (140)
T cd02905         100 LQLAKELGLESIALCVISSEKRNYPP  125 (140)
T ss_pred             HHHHHHcCCCEEEECCcccCCCCCCH
Confidence            99999999999999999999999983

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal

>PRK04143 hypothetical protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=210.16  Aligned_cols=91  Identities=41%  Similarity=0.581  Sum_probs=85.2

Q ss_pred             ccchHHHHHHHhhCHHHHHHHHhh-----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-------CcHHHHHHH
Q psy3800           3 WREIIDGAIHRAAGPQLKEECRTL-----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-------EKPALLKSA   70 (133)
Q Consensus         3 ~~ggVs~AI~~aaG~~l~~ec~~~-----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-------~~~~~L~~~   70 (133)
                      ..|||++|||++||++|++||+++     +.+++|++++|+||+|||      +||||+|||.|       ++.++|++|
T Consensus       115 ~~ggId~aI~~aAG~~L~~eC~~~~~~~g~~~~~G~a~iT~~~nLp~------kyVIHtVgP~~~~g~~~~~~~~~L~~c  188 (264)
T PRK04143        115 NHDCIDNAIHTFAGVQLRLDCAEIMTEQGRKEATGQAKITRAYNLPA------KYVIHTVGPIIRKQPVSPIRADLLASC  188 (264)
T ss_pred             CCCcHHHHHHHHhChHHHHHHHHHHHHcCCCCCCceEEEecCCCCCC------CEEEEECCCcccCCCCCcchHHHHHHH
Confidence            358999999999999999999875     468999999999999999      99999999998       247899999


Q ss_pred             HHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800          71 YQRSLEVMKQNNLRSILEVMKQNNLRSID   99 (133)
Q Consensus        71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~   99 (133)
                      |++||++|++++++|||||+||||+||||
T Consensus       189 y~s~L~~A~~~~~kSIAfP~IsTGi~gfP  217 (264)
T PRK04143        189 YRSCLKLAEKAGLKSIAFCCISTGVFGFP  217 (264)
T ss_pred             HHHHHHHHHHcCCCEEEeccccCCCCCCC
Confidence            99999999999999999999999999998

>cd02906 Macro_1 Macro domain, Unknown family 1

Probab=99.97  E-value=1.9e-30  Score=193.23  Aligned_cols=94  Identities=41%  Similarity=0.582  Sum_probs=86.5

Q ss_pred             ccchHHHHHHHhhCHHHHHHHHhh-----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-------CcHHHHHHH
Q psy3800           3 WREIIDGAIHRAAGPQLKEECRTL-----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-------EKPALLKSA   70 (133)
Q Consensus         3 ~~ggVs~AI~~aaG~~l~~ec~~~-----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-------~~~~~L~~~   70 (133)
                      +.|||++||++++||+|++||+++     +.+++|++++|++|+|||      +||||+|||.|       ++.+.|++|
T Consensus        32 ~~ggv~~aI~~~aG~~l~~e~~~~~~~~g~~~~~G~a~~T~~~~L~~------k~VIHavgP~~~~~~~~~~~~~~L~~~  105 (147)
T cd02906          32 LHRCIDNIIHTFAGPQLRQACFELMTKQGREEPTGQAKITPGYNLPA------KYVIHTVGPIIERGLTTPIHRDLLAKC  105 (147)
T ss_pred             CCCcHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC------CEEEEECCCcccCCCCCccHHHHHHHH
Confidence            468999999999999999999875     368999999999999999      99999999999       246899999


Q ss_pred             HHHHHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      |+++|+.|++++++|||||+||||++|||..+
T Consensus       106 ~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~  137 (147)
T cd02906         106 YLSCLDLAEKAGLKSIAFCCISTGLFGFPQEE  137 (147)
T ss_pred             HHHHHHHHHHcCCCEEEECcccccCCCCCHHH
Confidence            99999999999999999999999999998433

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.

>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family

Probab=99.97  E-value=4.6e-30  Score=193.27  Aligned_cols=95  Identities=53%  Similarity=0.792  Sum_probs=89.9

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAYQRSL   75 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y~~~L   75 (133)
                      +..+|||++||++++|++|++||++.+++++|++++|++|+|+|      +||||+|||.|     ++.+.|++||+++|
T Consensus        25 l~~~ggv~~ai~~~~G~~l~~e~~~~~~~~~G~~v~T~~~~l~~------~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L   98 (165)
T cd02908          25 LLGGGGVDGAIHRAAGPELLEECRELRGCPTGEAVITSGYNLPA------KYVIHTVGPVWRGGQHNEAELLASCYRNSL   98 (165)
T ss_pred             ccCCCcHHHHHHHHhCHHHHHHHHHhCCCCCCCEEEeeCCCCCC------CEEEEEcCCcccCCCCcHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999      99999999999     35799999999999


Q ss_pred             HHHHHCCCcEEEEccccccccchHHH
Q psy3800          76 EVMKQNNLRSILEVMKQNNLRSIDIL  101 (133)
Q Consensus        76 ~~A~~~~~~SIAfPaigtG~~g~~~~  101 (133)
                      +.|.+++++|||||+||||++|+|..
T Consensus        99 ~~a~~~~~~sIa~P~igtG~~g~p~~  124 (165)
T cd02908          99 ELARENGLRSIAFPAISTGVYGYPLD  124 (165)
T ss_pred             HHHHHcCCCEEEECceecCCCCCCHH
Confidence            99999999999999999999999843

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.

>cd02903 Macro_BAL_like Macro domain, BAL_like family

Probab=99.96  E-value=8e-29  Score=181.86  Aligned_cols=96  Identities=26%  Similarity=0.210  Sum_probs=88.2

Q ss_pred             ccchHHHHHHHhhCHHHHHHHHhhCCCC-CCcEEEccCCCCCCCCCCCCceEEEeeCCCCC--cHHHHHHHHHHHHHHHH
Q psy3800           3 WREIIDGAIHRAAGPQLKEECRTLNGCE-TGDAKITAGYNLPAKLPINAKHVIHTVGPVGE--KPALLKSAYQRSLEVMK   79 (133)
Q Consensus         3 ~~ggVs~AI~~aaG~~l~~ec~~~~~~~-~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~~--~~~~L~~~y~~~L~~A~   79 (133)
                      ..|||+++|++++|+++++||++...++ +|++++|++|+|||      |||||+++|.|.  +.+.|+++|++||+.|+
T Consensus        29 ~~ggv~~aI~~~~G~~l~~~~~~~~~~~~~G~~~vT~~~~L~~------k~IiH~~~p~~~~~~~~~l~~~~~~~L~~a~  102 (137)
T cd02903          29 LKGGVSKAILRKAGPELQKELDKAKLGQTVGSVIVTKGGNLPC------KYVYHVVLPNWSNGALKILKDIVSECLEKCE  102 (137)
T ss_pred             CCCCHHHHHHHhccHHHHHHHHHHcCCCCCCeEEEecCCCCCC------CEEEEecCCCCCCchHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999987777 59999999999999      999999999993  46899999999999999


Q ss_pred             HCCCcEEEEccccccccchHHHhhh
Q psy3800          80 QNNLRSILEVMKQNNLRSIDILKGR  104 (133)
Q Consensus        80 ~~~~~SIAfPaigtG~~g~~~~~~~  104 (133)
                      +++++|||||+||||++|+|..+.+
T Consensus       103 ~~~~~SIAfP~igtG~~g~p~~~~A  127 (137)
T cd02903         103 ELSYTSISFPAIGTGNLGFPKDVVA  127 (137)
T ss_pred             HCCCcEEEECCCcCcCCCCCHHHHH
Confidence            9999999999999999999854444

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin

>PRK00431 RNase III inhibitor; Provisional

Probab=99.96  E-value=9.2e-29  Score=187.69  Aligned_cols=98  Identities=45%  Similarity=0.627  Sum_probs=90.5

Q ss_pred             cccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAYQ   72 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y~   72 (133)
                      ..+|||++||++++|+++++||++.    +++++|++++|++|+|++      +||||+|+|.|     .+.+.|++||+
T Consensus        29 ~~~ggva~aI~~~~G~~l~~e~~~~~~~~~~l~~G~~~~T~~~~l~~------~~IiH~v~P~~~~~~~~~~~~L~~~~~  102 (177)
T PRK00431         29 LGGGGVDGAIHRAAGPEILEECRELRQQQGPCPTGEAVITSAGRLPA------KYVIHTVGPVWRGGEDNEAELLASAYR  102 (177)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCCCC------CEEEEecCCeecCCCCcHHHHHHHHHH
Confidence            4679999999999999999999887    899999999999999999      99999999999     24689999999


Q ss_pred             HHHHHHHHCCCcEEEEccccccccchHHHhhhh
Q psy3800          73 RSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQ  105 (133)
Q Consensus        73 ~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~~~  105 (133)
                      ++|+.|++++++|||||+||||++|+|....+.
T Consensus       103 ~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~  135 (177)
T PRK00431        103 NSLRLAAELGLRSIAFPAISTGVYGYPLEDAAR  135 (177)
T ss_pred             HHHHHHHHcCCceEEECccccCccCCCHHHHHH
Confidence            999999999999999999999999999555443

>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family

Probab=99.96  E-value=2.4e-28  Score=185.25  Aligned_cols=96  Identities=30%  Similarity=0.350  Sum_probs=88.6

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSA   70 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~   70 (133)
                      |..+|||+++|++++|+++++||++.    +++++|++++|++|+|||      |||||+|+|.|      ++.+.|++|
T Consensus        27 ~~~~ggv~~ai~~~~G~~l~~e~~~~~~~~g~~~~G~~~~T~~~~L~~------k~IiH~v~P~~~~~~~~~~~~~L~~~  100 (175)
T cd02907          27 LKHGGGLALAIVKAGGPEIQEESDEYVRKNGPVPTGEVVVTSAGKLPC------KYVIHAVGPRWSGGEAEECVEKLKKA  100 (175)
T ss_pred             cCCCCCHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCC------CEEEEeCCCcCCCCCCchHHHHHHHH
Confidence            34689999999999999999999764    899999999999999999      99999999999      246899999


Q ss_pred             HHHHHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      |++||+.|.+++++|||||+||||++|+|..+
T Consensus       101 ~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~  132 (175)
T cd02907         101 ILNSLRKAEELGLRSIAIPAISSGIFGFPLER  132 (175)
T ss_pred             HHHHHHHHHHcCCCEEEECCcccCCCCCCHHH
Confidence            99999999999999999999999999998443

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains

>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

Probab=99.94  E-value=4.4e-27  Score=180.88  Aligned_cols=95  Identities=39%  Similarity=0.566  Sum_probs=87.2

Q ss_pred             cccchHHHHHHHhhCHHHHHHHHhh------CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKEECRTL------NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSA   70 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~ec~~~------~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~   70 (133)
                      .++|||+.||++++||++++||+..      .+.++|++++|++|+|+.      +||||+|||.|     ...+.|..|
T Consensus        29 ~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a------~~ViH~vgp~~~~g~~~~~e~l~~a  102 (179)
T COG2110          29 LGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPA------KYVIHTVGPSWRGGSKDEAELLAAA  102 (179)
T ss_pred             CCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCC------CEEEecCCCcccCCChhHHHHHHHH
Confidence            5789999999999999999999876      237779999999999999      99999999998     556799999


Q ss_pred             HHHHHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      |+++|++|++++++|||||+||||++|+|...
T Consensus       103 ~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~  134 (179)
T COG2110         103 YRAALRLAKEAGVRSVAFPAISTGVYGFPLEE  134 (179)
T ss_pred             HHHHHHHHHHcCCceeecccccCcccCCCHHH
Confidence            99999999999999999999999999998433

>cd03330 Macro_2 Macro domain, Unknown family 2

Probab=99.94  E-value=1.5e-26  Score=168.00  Aligned_cols=96  Identities=21%  Similarity=0.243  Sum_probs=89.9

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQRSLEV   77 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~~L~~   77 (133)
                      |.+++||+++|++++|+++++||++.+++++|++++|++++|||      |||||+++|.+   .+.+.|++||+++|+.
T Consensus        25 ~~~g~Gva~ai~~~~G~~~~~~~~~~~~~~~G~~~~t~~~~l~~------k~Iih~~~~~~~~~~~~~~l~~~~~~~l~~   98 (133)
T cd03330          25 LRMGGGVAGAIKRAGGSVIEREAVRKAPIPVGEAVITGAGDLPA------RYVIHAATMEEPGRSSEESVRKATRAALAL   98 (133)
T ss_pred             CCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCCeEEEEeCCCCCC------CEEEEeCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999      99999999975   5778999999999999


Q ss_pred             HHHCCCcEEEEccccccccchHHHh
Q psy3800          78 MKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        78 A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      |++++++|||||+||||.+|+|..+
T Consensus        99 a~~~~~~sIA~P~igtG~~g~~~~~  123 (133)
T cd03330          99 ADELGIESVAFPAMGTGVGGLPKED  123 (133)
T ss_pred             HHHcCCCEEEECcccccCCCCCHHH
Confidence            9999999999999999999998433

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.

>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands

Probab=99.94  E-value=2.8e-26  Score=160.61  Aligned_cols=97  Identities=31%  Similarity=0.466  Sum_probs=90.3

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSA   70 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~   70 (133)
                      +.+++||+++|++++|++++++|++.    +++++|++++|++++|++      +||||+|+|.|      .+.+.|+++
T Consensus         8 ~~~g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~------~~Iih~v~P~~~~~~~~~~~~~L~~~   81 (118)
T PF01661_consen    8 LSMGGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTPGGNLPC------KYIIHAVGPTYNSPGEKNSYEALESA   81 (118)
T ss_dssp             SSBSSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEEETTSSS------SEEEEEEEEETTTSTSTTHHHHHHHH
T ss_pred             CCCCchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeecCCCccc------cceEEEecceeccccccccHHHHHHH
Confidence            35789999999999999999999875    779999999999999999      99999999998      688999999


Q ss_pred             HHHHHHHHHHCCCcEEEEccccccccchHHHhh
Q psy3800          71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILKG  103 (133)
Q Consensus        71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~  103 (133)
                      |+++|+.|++++++||+||+||||++|+|....
T Consensus        82 ~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~  114 (118)
T PF01661_consen   82 YRNALQKAEENGIKSIAFPAIGTGIGGFPWDEV  114 (118)
T ss_dssp             HHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHH
T ss_pred             HHHHHHHHHHcCCcccccCcccCCCCCCCHHHH
Confidence            999999999999999999999999999985443

Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....

>KOG2633|consensus

Probab=99.90  E-value=6.3e-24  Score=165.44  Aligned_cols=111  Identities=37%  Similarity=0.526  Sum_probs=95.4

Q ss_pred             cccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHH--HHHHHHHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPA--LLKSAYQRSLE   76 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~--~L~~~y~~~L~   76 (133)
                      .-++|++.+||+++||++.+||.+.+.|++|.+++|.+++||+      |+|||+|||.|   ...+  .|..||+++|.
T Consensus        53 ~~g~~~~~ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~Lpa------k~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~  126 (200)
T KOG2633|consen   53 LGGKGVDEAIHRAAGPELPLECAYLHGCRTGAAKSTGGYGLPA------KRVIHTVGPRWKEDKLQECYFLHSCYRSCLD  126 (200)
T ss_pred             ccCcchhHHHHHhcCCcchHHHHhhcCCCCCeeEecCCCCCce------eEEEEecCchhhccchHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999889999999999999999      99999999999   2223  59999999999


Q ss_pred             HHHHCCCcEEEEccccccccchHHHhhhhhhHHHHHhhhhhhhhhhhc
Q psy3800          77 VMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRG  124 (133)
Q Consensus        77 ~A~~~~~~SIAfPaigtG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (133)
                      +|.++.++|||||+|+||.+|||  .+.    +...-++++|.++..+
T Consensus       127 la~~~~ls~iAf~~I~sg~~gyP--~e~----aa~~~l~ti~~~f~~~  168 (200)
T KOG2633|consen  127 LAIEKLLSSIAFPKISSGRVGYP--WED----AAKIELETIRVFFVKN  168 (200)
T ss_pred             HHHHhccceeeeeeeeccccCcc--HHH----HHHHHHHHHHHHHhhC
Confidence            99999999999999999999998  443    3344455666655444

>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family

Probab=99.88  E-value=2.9e-22  Score=154.93  Aligned_cols=103  Identities=12%  Similarity=0.004  Sum_probs=85.9

Q ss_pred             cccchHHHHHHHhhC-HHHHHHHHhh------CCCCCCcEEEccCCCCCC----CCCCCCceEEEeeC---C-CC-CcHH
Q psy3800           2 VWREIIDGAIHRAAG-PQLKEECRTL------NGCETGDAKITAGYNLPA----KLPINAKHVIHTVG---P-VG-EKPA   65 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG-~~l~~ec~~~------~~~~~G~~viT~~~~L~~----~~~~~~k~IIH~Vg---P-~~-~~~~   65 (133)
                      .++|||++||++++| ++|+++|++.      +.+++|++++|++++|+.    ....+++||||+++   | .+ .+.+
T Consensus        55 ~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~  134 (186)
T cd02900          55 YLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVPLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTE  134 (186)
T ss_pred             CCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEecCCCCccccccccccCCCEEEEcCcccCCCCCCCcHH
Confidence            468999999999999 7899998653      899999999999999990    00001299999986   5 33 6778


Q ss_pred             HHHHHHHHHHHHHHHC--CCcEEEEccccccccchHHHhhh
Q psy3800          66 LLKSAYQRSLEVMKQN--NLRSILEVMKQNNLRSIDILKGR  104 (133)
Q Consensus        66 ~L~~~y~~~L~~A~~~--~~~SIAfPaigtG~~g~~~~~~~  104 (133)
                      .|++||+++|+.|+++  +++|||||+||||.+|+|..+.+
T Consensus       135 ~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA  175 (186)
T cd02900         135 PVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAA  175 (186)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHH
Confidence            9999999999999987  89999999999999999954444

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.

>smart00506 A1pp Appr-1"-p processing enzyme

Probab=99.87  E-value=9.8e-22  Score=140.57  Aligned_cols=96  Identities=38%  Similarity=0.512  Sum_probs=86.0

Q ss_pred             cccchHHHHHHHhhCHHH-HHHHHhh--CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQL-KEECRTL--NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAYQR   73 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l-~~ec~~~--~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y~~   73 (133)
                      .++||++++|++++|+++ ++++++.  +.+++|++++|+++++++      +||||+++|.|     .+.+.|++||++
T Consensus        26 ~~~~g~a~~i~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~------~~Iih~~~p~~~~~~~~~~~~l~~~~~~   99 (133)
T smart00506       26 AHGGGVAGAIARAAGKALEKEAFRKLAGGECPVGTAVVTEGGNLPA------KYVIHAVGPRASGHSNEGFELLENAYRN   99 (133)
T ss_pred             CCCCcHHHHHHHHhChHHHHHHHHHhcCCCcCCccEEEecCCCCCC------CEEEEeCCCCCCCCCccHHHHHHHHHHH
Confidence            578999999999999996 6666655  379999999999999999      99999999998     356899999999


Q ss_pred             HHHHHHHCCCcEEEEccccccccchHHHhh
Q psy3800          74 SLEVMKQNNLRSILEVMKQNNLRSIDILKG  103 (133)
Q Consensus        74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~~~  103 (133)
                      +|+.|.+++++|||||+||||.+|+|..+.
T Consensus       100 ~l~~~~~~~~~sIa~P~igtG~~g~~~~~~  129 (133)
T smart00506      100 CLELAIELGITSVAIPLIGTGIYGVPKDRS  129 (133)
T ss_pred             HHHHHHHcCCCEEEECCccCCCCCCCHHHH
Confidence            999999999999999999999999985443

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).

>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

Probab=99.86  E-value=4.2e-21  Score=139.82  Aligned_cols=92  Identities=33%  Similarity=0.434  Sum_probs=85.0

Q ss_pred             cccchHHHHHHHhhCHHHHHHHHhhCC---CCCCcEEEccCCCCC-CCCCCCCceEEEeeCCCC-C-----cHHHHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKEECRTLNG---CETGDAKITAGYNLP-AKLPINAKHVIHTVGPVG-E-----KPALLKSAY   71 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~ec~~~~~---~~~G~~viT~~~~L~-~~~~~~~k~IIH~VgP~~-~-----~~~~L~~~y   71 (133)
                      .+++|++.+|++++|+++++|+++..+   +++|++++|++++++ +      +||||+++|.| .     +.+.|++||
T Consensus        27 ~~g~gi~~ai~~~~g~~~~~~~~~~~~~~~~~~G~~~~t~~~~~~~~------~~vih~~~p~~~~~~~~~~~~~l~~a~  100 (147)
T cd02749          27 RDGGGVNLAISKKAGKELEEESKKLRKELELQVGEAVLTKGYNLDGA------KYLIHIVGPKYNQGNNKAAFELLKNAY  100 (147)
T ss_pred             CCCChHHHHHHHHhCHHHHHHHHHHhcccCCCCCCEEECcCCCCCcC------CEEEEeCCCCCCCCCCchHHHHHHHHH
Confidence            478999999999999999999988633   689999999999998 8      99999999998 1     468999999


Q ss_pred             HHHHHHHHHCCCcEEEEccccccccchH
Q psy3800          72 QRSLEVMKQNNLRSILEVMKQNNLRSID   99 (133)
Q Consensus        72 ~~~L~~A~~~~~~SIAfPaigtG~~g~~   99 (133)
                      +++|+.|.+++++|||||.||||.+|++
T Consensus       101 ~~~L~~~~~~~~~sIa~P~igtG~~g~~  128 (147)
T cd02749         101 ENCLKEAEEKGIKSIAFPLIGTGPAGFP  128 (147)
T ss_pred             HHHHHHHHHcCCCEEEECCcccccCCCC
Confidence            9999999999999999999999999994

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.83  E-value=2.9e-22  Score=180.17  Aligned_cols=94  Identities=21%  Similarity=0.148  Sum_probs=87.4

Q ss_pred             CcccchHHHHHHHhhCHHH---HHHHHh------------------------------------hCCCCCCcEEEc----
Q psy3800           1 MVWREIIDGAIHRAAGPQL---KEECRT------------------------------------LNGCETGDAKIT----   37 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l---~~ec~~------------------------------------~~~~~~G~~viT----   37 (133)
                      ++++|||++||+++||+++   ++||++                                    ++++++|++++|    
T Consensus       504 ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~  583 (725)
T PRK13341        504 LLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELW  583 (725)
T ss_pred             chhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccccccchhhhhhcCcccceeeeeccCcccchhhHHHHH
Confidence            4689999999999999999   888865                                    489999999999    


Q ss_pred             --------cCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHHHHHHHHHCCCc----------EEEEcccccccc
Q psy3800          38 --------AGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQRSLEVMKQNNLR----------SILEVMKQNNLR   96 (133)
Q Consensus        38 --------~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~~L~~A~~~~~~----------SIAfPaigtG~~   96 (133)
                              ++|+|++      +||||+|||.|   ...+.|.+||+++|+.|++++++          |||||+||||+|
T Consensus       584 ~~l~~~~~~~g~L~~------~~vIh~vGp~~~~~~~~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~  657 (725)
T PRK13341        584 QQLTEKLTPAGKLKL------LYSIPAVGPAWALLSEDELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIE  657 (725)
T ss_pred             HHHHHhcCCCCeeEE------EEeccccChHhhhcCccchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCcccee
Confidence                    9999999      99999999999   44679999999999999999999          999999999999


Q ss_pred             chHH
Q psy3800          97 SIDI  100 (133)
Q Consensus        97 g~~~  100 (133)
                      |||.
T Consensus       658 ~~p~  661 (725)
T PRK13341        658 QWPE  661 (725)
T ss_pred             cCCc
Confidence            9984

>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family

Probab=99.65  E-value=1.8e-15  Score=110.27  Aligned_cols=93  Identities=13%  Similarity=0.125  Sum_probs=77.4

Q ss_pred             cccchHHHHHHHh--hC-HHHHHHHHhhCCCCCCc-EEEccCCCCCCCCCCCCceEEEeeCCCC----CcHHHHHHHHHH
Q psy3800           2 VWREIIDGAIHRA--AG-PQLKEECRTLNGCETGD-AKITAGYNLPAKLPINAKHVIHTVGPVG----EKPALLKSAYQR   73 (133)
Q Consensus         2 ~~~ggVs~AI~~a--aG-~~l~~ec~~~~~~~~G~-~viT~~~~L~~~~~~~~k~IIH~VgP~~----~~~~~L~~~y~~   73 (133)
                      .|++|++.+|.++  .+ .++++.|++... ..|+ ++++.++++++      ++|+|+++|.+    .+.+.|++++++
T Consensus        27 ~mG~Gia~~i~~~~p~~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~------~~I~~~~t~~~~~~~~~~~~l~~~l~~   99 (140)
T cd02901          27 VMGKGIALQFKEKFPEFVEEYRAACKKKEL-LLGGVAVLERGSSLVS------RYIYNLPTKVHYGPKSRYEAIEKSLRE   99 (140)
T ss_pred             ccChHHHHHHHHHCcHHHHHHHHHHHhcCC-CCCcEEEEecCCCCCc------eEEEEeeccCCCCCCCcHHHHHHHHHH
Confidence            5889999999997  33 356666776544 4555 55567888888      99999999976    567899999999


Q ss_pred             HHHHHHHCCCcEEEEccccccccchHHH
Q psy3800          74 SLEVMKQNNLRSILEVMKQNNLRSIDIL  101 (133)
Q Consensus        74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~  101 (133)
                      +++.|++++++|||||.||+|.+|+|..
T Consensus       100 ~~~~a~~~~~~sva~P~iG~G~~G~~w~  127 (140)
T cd02901         100 LRAHARDNGIKSVAMPRIGCGLGGLDWE  127 (140)
T ss_pred             HHHHHHHcCCCEEeeCCCCCcCCCCCHH
Confidence            9999999999999999999999999843

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.

>PHA02595 tk

Probab=99.38  E-value=7.8e-12  Score=93.80  Aligned_cols=91  Identities=12%  Similarity=0.002  Sum_probs=76.3

Q ss_pred             cccchHHHHHHHhhCHHHHHHHHhh---CCCCCCcEEE-ccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKEECRTL---NGCETGDAKI-TAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAYQ   72 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~ec~~~---~~~~~G~~vi-T~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y~   72 (133)
                      +|++|||.+|.++.+ ++.++.++.   ++.+.|++.+ |++++.+.      +||+|..+- |     .+.+.|+++++
T Consensus        30 ~mG~GIA~~~k~~~P-~~~~~y~~~~~~~~~~lG~~~~~~~~~~~~~------~~I~nl~tq-~~~~~~~~y~ai~~~l~  101 (154)
T PHA02595         30 TMGSGIAGQLAKAFP-QILEADKLTTEGDVEKLGTFSVWEKYVGGHK------AYCFNLYTQ-FDPGPNLEYSALMNCFE  101 (154)
T ss_pred             cCChHHHHHHHHHcC-hHHHHHHHHhcCCccccceEEEEEeeccCCC------EEEEEEecc-CCCCCCCcHHHHHHHHH
Confidence            689999999999995 677766554   5678999965 66777776      999999765 5     34567999999


Q ss_pred             HHHHHHHHCCC-cEEEEccccccccchHH
Q psy3800          73 RSLEVMKQNNL-RSILEVMKQNNLRSIDI  100 (133)
Q Consensus        73 ~~L~~A~~~~~-~SIAfPaigtG~~g~~~  100 (133)
                      +..+.+++++. +|||||.||+|++|.|-
T Consensus       102 ~l~~~~~~~~~~~sIa~P~IG~GlgGl~W  130 (154)
T PHA02595        102 ELNEVFEGTLFKPTIYIPRIGAGIAGGDW  130 (154)
T ss_pred             HHHHHHHhcCCCcEEeeCCCCccCCCCCH
Confidence            99999999998 99999999999999984

4 hypothetical protein; Provisional

>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A

Probab=97.54  E-value=0.00047  Score=56.67  Aligned_cols=101  Identities=13%  Similarity=0.029  Sum_probs=56.1

Q ss_pred             ccchHHHHHHHhhCH-HHHHHHHhh---CCCCCCcEEE--ccCCCCCC--CCCCCCceEEEee---CCC---C-------
Q psy3800           3 WREIIDGAIHRAAGP-QLKEECRTL---NGCETGDAKI--TAGYNLPA--KLPINAKHVIHTV---GPV---G-------   61 (133)
Q Consensus         3 ~~ggVs~AI~~aaG~-~l~~ec~~~---~~~~~G~~vi--T~~~~L~~--~~~~~~k~IIH~V---gP~---~-------   61 (133)
                      ++||.+.||.+.-|. .++.-.++.   ...++|++-+  +.-...+.  +...+++||+|+=   .|.   |       
T Consensus        82 MgGGFDLai~~~fggk~~E~~~r~~l~~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~  161 (280)
T PF14519_consen   82 MGGGFDLAISEYFGGKPFENWFRAQLGERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYE  161 (280)
T ss_dssp             --SHHHHHHHHHHTSHHHHHHHHHHTTTS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTT
T ss_pred             CCCchhHHHHHHhCCchhHHHHHHHHhccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchhHHHH
Confidence            589999999999664 455445443   3356776655  33221110  0123679999975   443   3       


Q ss_pred             CcHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchHHHhhh
Q psy3800          62 EKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGR  104 (133)
Q Consensus        62 ~~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~~  104 (133)
                      ..-+.+.++++|+|..+. ..+.+|.+|.|+||..|.+..+.+
T Consensus       162 t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~~sA  203 (280)
T PF14519_consen  162 TGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPEISA  203 (280)
T ss_dssp             TTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HHHHH
T ss_pred             HHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHHHHH
Confidence            234567889999887764 579999999999999999865554

>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily

Probab=97.45  E-value=0.0022  Score=48.28  Aligned_cols=96  Identities=14%  Similarity=0.085  Sum_probs=66.7

Q ss_pred             ccc-chHHHHHHHhhC--HHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC--------CcHHHHHHH
Q psy3800           2 VWR-EIIDGAIHRAAG--PQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG--------EKPALLKSA   70 (133)
Q Consensus         2 ~~~-ggVs~AI~~aaG--~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~--------~~~~~L~~~   70 (133)
                      .|+ ||++.||.++.-  ++..++|.+.+.+..|++.+..-..-... ..+-.+|.-.++..+        -+.+.|++|
T Consensus        31 ~WG~gGia~al~~k~p~~~~~Y~~~~~~~dl~LG~~~li~v~~~~~~-~~~~~~va~l~~q~~~~~~~~~~~~~~aL~~~  109 (152)
T cd03331          31 HWGRGGLFTALEKRSDQPRKAYELAGKMKDLHLGDLHLFPIDDKNSR-LKGPDWVALIVAQHRDKSNPLSGIKLSALEKG  109 (152)
T ss_pred             CCCcchHHHHHHHhCCcHHHHHHHHHhcCCCccccEEEEEeccccCC-CCCCeEEEEEEeEccCCCCCCCccCHHHHHHH
Confidence            477 699999999874  23334455556677999888654211110 011268888887765        355778888


Q ss_pred             HHHHHHHHHHCCCcEEEEccccccccchH
Q psy3800          71 YQRSLEVMKQNNLRSILEVMKQNNLRSID   99 (133)
Q Consensus        71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~   99 (133)
                      +.+.-..|.+ +-.||.+|=|++|.+|.+
T Consensus       110 L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~  137 (152)
T cd03331         110 LKKIYFAAKQ-KSASVHLPRIGHSTKSFN  137 (152)
T ss_pred             HHHHHHHHHc-CCCEEEeCCCCCCCCCCC
Confidence            8888777765 558999999999999986

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven

>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans

Probab=96.10  E-value=0.035  Score=49.19  Aligned_cols=87  Identities=14%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             CCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchHHH
Q psy3800          28 GCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDIL  101 (133)
Q Consensus        28 ~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~  101 (133)
                      .+.+||+.||.=.||+.     +.-|+|.|.-.-      .+..-+-..++|+|+.|.++++.+|.+|.+-+.-..-   
T Consensus       371 ~l~~gd~yitrhsnl~~-----~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e---  442 (510)
T PF10154_consen  371 TLKPGDFYITRHSNLSD-----VHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSE---  442 (510)
T ss_pred             cCCCCceEEecccCccc-----ceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccch---
Confidence            46899999999999986     678899995432      4556677899999999999999999999999875433   


Q ss_pred             hhhhhhHHHHHh---hhhhhhhhhh
Q psy3800         102 KGRQQKWRYRLC---MTFSRNILIR  123 (133)
Q Consensus       102 ~~~~~~~~~~~~---~~~~~~~~~~  123 (133)
                       +.-..|..+++   +.+++=++..
T Consensus       443 -~mt~~wc~~Raelv~k~vkg~~~e  466 (510)
T PF10154_consen  443 -EMTIPWCLKRAELVFKCVKGFMME  466 (510)
T ss_pred             -hccHHHHHHHHHHHHHHHHHHHHH
Confidence             33334655555   4566655544

The function is not known.

>TIGR02452 conserved hypothetical protein TIGR02452

Probab=87.68  E-value=1.6  Score=35.71  Aligned_cols=38  Identities=16%  Similarity=0.164  Sum_probs=35.1

Q ss_pred             cHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchHH
Q psy3800          63 KPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDI  100 (133)
Q Consensus        63 ~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~  100 (133)
                      ..+.+++-++..|..|..+|.+++-+-|.|+|.|+-|-
T Consensus       186 ~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p  223 (266)
T TIGR02452       186 IPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDP  223 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCH
Confidence            45789999999999999999999999999999999974

Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
2x47_A	235	Crystal Structure Of Human Macrod1 Length = 235		4e-18
1spv_A	184	Crystal Structure Of The Putative Phosphatase Of Es		4e-10
4ess_A	167	Crystal Structure Of E6dL155R VARIANT OF DE NOVO DE		6e-05
3v45_A	167	Crystal Structure Of De Novo Designed Serine Hydrol		6e-05
2dx6_A	159	Crystal Structure Of Conserved Hypothetical Protein		7e-05
4etj_A	167	Crystal Structure Of E6h Variant Of De Novo Designe		7e-05
4gvv_A	167	Crystal Structure Of De Novo Design Serine Hydrolas		7e-05
4etk_A	167	Crystal Structure Of E6aL130DA155H VARIANT OF DE NO		8e-05

>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 12/86 (13%)
Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DG IHRAAGP L +ECRTL  C+TG AKIT GY LP      AK+VIHTVGP+      
Sbjct: 93  VDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLP------AKYVIHTVGPIAYGEPS 146
Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
             + A L+S Y  SL+++ ++ LRS+
Sbjct: 147 ASQAAELRSCYLSSLDLLLEHRLRSV 172

>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 15/89 (16%)
Query: 7   IDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
           +DGAIHRAAGP L + C  +      C TG A IT   +LPAK       V+HTVGPV  
Sbjct: 34  VDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKA------VVHTVGPVWR 87
Query: 61  -GEK--PALLKSAYQRSLEVMKQNNLRSI 86
            GE+    LL+ AY  SL ++  N+  S+
Sbjct: 88  GGEQNEDQLLQDAYLNSLRLVAANSYTSV 116

>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED SERINE Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or187 Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           + GAI R  GP ++EEC  +     G+A +T   NLP       ++VIH    +G++PA 
Sbjct: 33  VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67  LKS---AYQRSLEVMKQNNLRSI 86
           L++   A + +LE   +  L+++
Sbjct: 86  LETVRKATKSALEKAVELGLKTV 108

>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium Target Or130 Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           + GAI R  GP ++EEC  +     G+A +T   NLP       ++VIH    +G++PA 
Sbjct: 33  VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67  LKS---AYQRSLEVMKQNNLRSI 86
           L++   A + +LE   +  L+++
Sbjct: 86  LETVRKATKSALEKAVELGLKTV 108

>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8 Length = 159

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           + GAI R  GP ++EEC  +     G+A +T   NLP       ++VIH    +G++PA 
Sbjct: 33  VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67  LKS---AYQRSLEVMKQNNLRSI 86
           L++   A + +LE   +  L+++
Sbjct: 86  LETVRKATKSALEKAVELGLKTV 108

>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or185 Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           + GAI R  GP ++EEC  +     G+A +T   NLP       ++VIH    +G++PA 
Sbjct: 33  VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67  LKS---AYQRSLEVMKQNNLRSI 86
           L++   A + +LE   +  L+++
Sbjct: 86  LETVRKATKSALEKAVELGLKTV 108

>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase Osh55.27, Northeast Structural Genomics Consortium (Nesg) Target Or246 Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           + GAI R  GP ++EEC  +     G+A +T   NLP       ++VIH    +G++PA 
Sbjct: 33  VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67  LKS---AYQRSLEVMKQNNLRSI 86
           L++   A + +LE   +  L+++
Sbjct: 86  LETVRKATKSALEKAVELGLKTV 108

>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO DESIGNED Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or186 Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPAL 66
           + GAI R  GP ++EEC  +     G+A +T   NLP       ++VIH    +G++PA 
Sbjct: 33  VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAA-VLGDEPAS 85
Query: 67  LKS---AYQRSLEVMKQNNLRSI 86
           L++   A + +LE   +  L+++
Sbjct: 86  LETVRKATKSALEKAVELGLKTV 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	3e-41
2x47_A	235	Macro domain-containing protein 1; signaling prote	4e-41
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	9e-40
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	2e-39
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	4e-39
1spv_A	184	Putative polyprotein/phosphatase; structural genom	1e-38
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	3e-38
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	1e-36
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	6e-35
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	1e-32
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	2e-32
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	3e-32
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	4e-30
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	2e-29
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	7e-29
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	8e-27
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	8e-08

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159

 Score =  133 bits (338), Expect = 3e-41
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEK--P 64
           + GAI R  GP ++EEC  +     G+A +T   NLP       ++VIH      E    
Sbjct: 33  VAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLP------VRYVIHAAVLGDEPASL 86

Query: 65  ALLKSAYQRSLEVMKQNNLRSI 86
             ++ A + +LE   +  L+++
Sbjct: 87  ETVRKATKSALEKAVELGLKTV 108

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235

 Score =  135 bits (342), Expect = 4e-41
 Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 12/86 (13%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +DG IHRAAGP L +ECRTL  C+TG AKIT GY LP      AK+VIHTVGP+      
Sbjct: 93  VDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLP------AKYVIHTVGPIAYGEPS 146

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
             + A L+S Y  SL+++ ++ LRS+
Sbjct: 147 ASQAAELRSCYLSSLDLLLEHRLRSV 172

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193

 Score =  130 bits (330), Expect = 9e-40
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 7   IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
           I  A+ +A G +  E  + L       E  +A ++    L       AK VIH   P   
Sbjct: 53  IGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQSSGLA------AKFVIHCHIPQWG 106

Query: 61  -GEKPALLKSAYQRSLEVMKQNNLRSI 86
             +    L+   +  L   +   L+S+
Sbjct: 107 SDKCEEQLEETIKNCLSAAEDKKLKSV 133

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193

 Score =  129 bits (327), Expect = 2e-39
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 13/87 (14%)

Query: 7   IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
           +   + +  G +  E    L       E   A ++AG+ LP      AK VIH   PV  
Sbjct: 50  VGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLP------AKFVIHCNSPVWG 103

Query: 61  -GEKPALLKSAYQRSLEVMKQNNLRSI 86
             +   LL+   +  L +     L+SI
Sbjct: 104 SDKCEELLEKTVKNCLALADDRKLKSI 130

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214

 Score =  129 bits (327), Expect = 4e-39
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 16/90 (17%)

Query: 7   IDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
           +  A+ +AAGP+L+ +C  +         G+A I+    LP        HVIH VGP   
Sbjct: 68  LAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLP------YHHVIHAVGPRWS 121

Query: 61  ----GEKPALLKSAYQRSLEVMKQNNLRSI 86
                    LL+ A Q SL + ++   RSI
Sbjct: 122 GYEAPRCVYLLRRAVQLSLCLAEKYKYRSI 151

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184

 Score =  127 bits (321), Expect = 1e-38
 Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 15/89 (16%)

Query: 7   IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
           +DGAIHRAAGP L + C  +      C TG A IT   +LP      AK V+HTVGPV  
Sbjct: 34  VDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLP------AKAVVHTVGPVWR 87

Query: 61  -GEKP--ALLKSAYQRSLEVMKQNNLRSI 86
            GE+    LL+ AY  SL ++  N+  S+
Sbjct: 88  GGEQNEDQLLQDAYLNSLRLVAANSYTSV 116

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221

 Score =  127 bits (321), Expect = 3e-38
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 14/88 (15%)

Query: 7   IDGAIHRAAGPQLKEECRTLN---GCETGDAKITAGYNLPAKLPINAKHVIHTVGPV--- 60
           +  ++   AGP+L+EE  T+        G    T+ +NL        ++V+H V P    
Sbjct: 71  LSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSSWNLD------CRYVLHVVAPEWRN 124

Query: 61  --GEKPALLKSAYQRSLEVMKQNNLRSI 86
                  +++   +  +E+ +  +L+SI
Sbjct: 125 GSTSSLKIMEDIIRECMEITESLSLKSI 152

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211

 Score =  123 bits (311), Expect = 1e-36
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 7   IDGAIHRAAGP----------QLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHT 56
           +  AI +A             +   E    +  + G+  +T   NL  +     K+V HT
Sbjct: 52  VAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEER---GIKYVFHT 108

Query: 57  VGPV------GEKPALLKSAYQRSLEVMKQNNLRSI 86
           VGP+       E    L  A+   LE  ++  + SI
Sbjct: 109 VGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESI 144

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176

 Score =  112 bits (282), Expect = 1e-32
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 14/85 (16%)

Query: 7   IDGAIHRAAGPQLKEECRT-LNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---E 62
           +  AI    G    E C   +         +T  +          + V + VGP      
Sbjct: 53  VAKAIADFCGLDFVEYCEDYVKKHGPQQRLVTPSFVKG------IQCVNNVVGPRHGDNN 106

Query: 63  KPALLKSAYQRSLEVMKQNNLRSIL 87
               L +AY+  L     + + + +
Sbjct: 107 LHEKLVAAYKNVLV----DGVVNYV 127

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182

 Score =  112 bits (281), Expect = 2e-32
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 20/87 (22%)

Query: 7   IDGAIHRAAGPQLKEEC----RTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
           + GA+++A    +++E     +       G + + +G+NL       AK  +H VGP   
Sbjct: 55  VAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-------AKKCLHVVGPNLN 107

Query: 61  -GEKPALLKSAYQRSLEVMKQNNLRSI 86
            GE   LLK+AY+        N+   +
Sbjct: 108 AGEDIQLLKAAYENF------NSQDIL 128

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168

 Score =  111 bits (279), Expect = 3e-32
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 20/86 (23%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           +  A+++      K           G AK       P         VIH VGP       
Sbjct: 41  VCKAVYKKWPESFKNSA-----TPVGTAKTVMCGTYP---------VIHAVGPNFSNYSE 86

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
            E    L +AY+   + + +  + S+
Sbjct: 87  SEGDRELAAAYREVAKEVTRLGVNSV 112

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168

 Score =  105 bits (264), Expect = 4e-30
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 20/86 (23%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV------ 60
           + GA+++        E   L   E G A++  G          AKH+IH VGP       
Sbjct: 35  VCGALYKKFP-----ESFDLQPIEVGKARLVKG---------AAKHIIHAVGPNFNKVSE 80

Query: 61  GEKPALLKSAYQRSLEVMKQNNLRSI 86
            E    L  AY+   +++  NN +S+
Sbjct: 81  VEGDKQLAEAYESIAKIVNDNNYKSV 106

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174

 Score =  103 bits (260), Expect = 2e-29
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 12/82 (14%)

Query: 7   IDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG--EKP 64
           +  AI      QL+   +       G  K+ AG  L  +      +V + VGP     + 
Sbjct: 52  VARAIDILTEGQLQSLSKDY-ISSNGPLKVGAGVMLECE----KFNVFNVVGPRTGKHEH 106

Query: 65  ALLKSAYQRSLEVMKQNNLRSI 86
           +LL  AY   L           
Sbjct: 107 SLLVEAYNSIL-----FENGIP 123

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168

 Score =  102 bits (256), Expect = 7e-29
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 19/87 (21%)

Query: 7   IDGAIHRAAGPQLKEEC----RTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG- 61
           +  AI    G +L +      ++      G+A +     L          V++ VGP   
Sbjct: 45  VARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENV-LE------HLSVMNAVGPRNG 97

Query: 62  --EKPALLKSAYQRSLEVMKQNNLRSI 86
                  L + Y+             I
Sbjct: 98  DSRVEGKLCNVYKAIA-----KCDGKI 119

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193

 Score = 97.8 bits (244), Expect = 8e-27
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 20/86 (23%)

Query: 7   IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG- 61
           +  A+      +L+   +         + G   +    +L          + + VGP   
Sbjct: 73  LAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSLR---------IFNVVGPRKG 123

Query: 62  -EKPALLKSAYQRSLEVMKQNNLRSI 86
             +  LL  AY         N   + 
Sbjct: 124 KHERDLLIKAYNTIN-----NEQGTP 144

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284

 Score = 48.5 bits (115), Expect = 8e-08
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 20/106 (18%)

Query: 7   IDGAIHRAAGPQLKEEC----RTLNGCETGDAKITAGYNLPAKLPI----NAKHVIHT-- 56
            D A++   G +  E              G A +        +  I      +++IH   
Sbjct: 89  FDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPT 148

Query: 57  ----VGPVGEKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSI 98
                 P+      LK+ ++     M    +          ++  +
Sbjct: 149 VVAPSAPIFNPQNPLKTGFEPVFNAMWNALMH------SPKDIDGL 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
1spv_A	184	Putative polyprotein/phosphatase; structural genom	99.97
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	99.97
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	99.97
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	99.97
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	99.97
2x47_A	235	Macro domain-containing protein 1; signaling prote	99.97
4abl_A	183	Poly [ADP-ribose] polymerase 14; transferase, PARP	99.97
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	99.97
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	99.96
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	99.96
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	99.96
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	99.95
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	99.95
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	99.94
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	99.94
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	99.93
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	99.93
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	99.92
4gua_A	670	Non-structural polyprotein; viral precursor polypr	99.91
2eee_A	149	Uncharacterized protein C6ORF130; macro domain, A1	99.85
2jyc_A	160	Uncharacterized protein C6ORF130; macro domain, A1	99.84
2fg1_A	158	Conserved hypothetical protein BT1257; structural	99.81
3sig_A	277	PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1	97.78

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2

Probab=99.97  E-value=1e-31  Score=205.09  Aligned_cols=95  Identities=39%  Similarity=0.563  Sum_probs=89.5

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAY   71 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y   71 (133)
                      +..+|||++||++++||+|++||+++    +++++|++++|++|+||+      |||||+|||.|     .+.+.|++||
T Consensus        28 l~~ggGv~~aI~~aaG~~l~~e~~~~~~~~g~~~~G~a~iT~~~~L~~------k~VIH~vgP~~~~~~~~~~~~L~~~y  101 (184)
T 1spv_A           28 LMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPA------KAVVHTVGPVWRGGEQNEDQLLQDAY  101 (184)
T ss_dssp             CSCCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEECCTTSSS------SEEEEECCCCCSSSSSSHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHhCHHHHHHHHHHHHhcCCCCCCCEEEeeCCCCCC------CEEEEEcCCcccCCCcchHHHHHHHH
Confidence            45789999999999999999999987    899999999999999999      99999999999     3578999999


Q ss_pred             HHHHHHHHHCCCcEEEEccccccccchHHH
Q psy3800          72 QRSLEVMKQNNLRSILEVMKQNNLRSIDIL  101 (133)
Q Consensus        72 ~~~L~~A~~~~~~SIAfPaigtG~~g~~~~  101 (133)
                      +++|++|++++++|||||+||||++|+|..
T Consensus       102 ~~~L~~a~~~~~~SIAfP~IstG~~g~p~~  131 (184)
T 1spv_A          102 LNSLRLVAANSYTSVAFPAISTGVYGYPRA  131 (184)
T ss_dssp             HHHHHHHHHTTCSEEEECCTTSSTTCCCHH
T ss_pred             HHHHHHHHHhCCceEEeccccCCCCCCCHH
Confidence            999999999999999999999999999843

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}

Probab=99.97  E-value=2e-31  Score=204.96  Aligned_cols=95  Identities=21%  Similarity=0.237  Sum_probs=89.5

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQR   73 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~   73 (133)
                      |..+|||++||++++||+|++||+++    +++++|++++|++|+|||      |||||+|||.|   .+.+.|++||++
T Consensus        47 l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~~~L~~------k~VIH~vgP~~~~~~~~~~L~~~y~~  120 (193)
T 2xd7_A           47 IDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQSSGLAA------KFVIHCHIPQWGSDKCEEQLEETIKN  120 (193)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTCEEEEECTTSSS------SEEEEEECCCTTSTTHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCeEEeeCCCCCC------CEEEEECCCcCCCcchHHHHHHHHHH
Confidence            46789999999999999999999875    899999999999999999      99999999999   467899999999


Q ss_pred             HHHHHHHCCCcEEEEccccccccchHHH
Q psy3800          74 SLEVMKQNNLRSILEVMKQNNLRSIDIL  101 (133)
Q Consensus        74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~  101 (133)
                      +|++|++++++|||||+||||++|+|..
T Consensus       121 ~L~~a~~~~~~SIAfP~IstG~~g~p~~  148 (193)
T 2xd7_A          121 CLSAAEDKKLKSVAFPPFPSGRNCFPKQ  148 (193)
T ss_dssp             HHHHHHHTTCSEEEECCCCCSTTCCCHH
T ss_pred             HHHHHHHcCCCEEEeccccCCCCCCCHH
Confidence            9999999999999999999999999843

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}

Probab=99.97  E-value=1.2e-31  Score=209.59  Aligned_cols=96  Identities=29%  Similarity=0.396  Sum_probs=88.9

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCCC------cHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE------KPALLKSA   70 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~~------~~~~L~~~   70 (133)
                      +..+|||++||+++|||+|++||+++    +++++|++++|++|+|||      |||||+|||.|.      +.+.|++|
T Consensus        62 l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~~~L~~------k~VIH~VgP~~~~~~~~~~~~~L~~~  135 (214)
T 3q6z_A           62 LKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPY------HHVIHAVGPRWSGYEAPRCVYLLRRA  135 (214)
T ss_dssp             CCCCSHHHHHHHHHHCTHHHHHHHHHHHHHCCCCTTCEEEEECTTSSS------SEEEEEECCCCCGGGHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCCC------CEEEEecCCcccCCCcchHHHHHHHH
Confidence            45789999999999999999999876    899999999999999999      999999999992      25789999


Q ss_pred             HHHHHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          71 YQRSLEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        71 y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      |+++|++|++++++|||||+||||++|||..+
T Consensus       136 y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~  167 (214)
T 3q6z_A          136 VQLSLCLAEKYKYRSIAIPAISSGVFGFPLGR  167 (214)
T ss_dssp             HHHHHHHHHHTTCSEEEECCTTSSTTCCCHHH
T ss_pred             HHHHHHHHHHcCCcEEEECcccCCCCCCCHHH
Confidence            99999999999999999999999999998433

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A

Probab=99.97  E-value=2.6e-31  Score=204.44  Aligned_cols=96  Identities=23%  Similarity=0.288  Sum_probs=89.8

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQR   73 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~   73 (133)
                      |..+|||++||++++||+|++||+++    +++++|++++|++|+|||      |||||+|||.|   .+.+.|++||++
T Consensus        44 l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~~~L~~------k~VIH~vgP~~~~~~~~~~L~~~y~~  117 (193)
T 1yd9_A           44 FYIGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPA------KFVIHCNSPVWGSDKCEELLEKTVKN  117 (193)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEECTTSSS------SEEEEECCCCTTSTTHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEecCCCCCC------CEEEEeCCCCcCCcchHHHHHHHHHH
Confidence            46789999999999999999999875    899999999999999999      99999999999   467899999999


Q ss_pred             HHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          74 SLEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      +|++|++++++|||||+||||++|+|..+
T Consensus       118 ~L~~a~~~~~~SIAfP~IstG~~g~p~~~  146 (193)
T 1yd9_A          118 CLALADDRKLKSIAFPSIGSGRNGFPKQT  146 (193)
T ss_dssp             HHHHHHHTTCSEEEECCCSBSTTCBCHHH
T ss_pred             HHHHHHHhCCceEeecccccCCCCCCHHH
Confidence            99999999999999999999999998433

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.9e-31  Score=209.63  Aligned_cols=92  Identities=22%  Similarity=0.293  Sum_probs=86.5

Q ss_pred             ccchHHHHHHHhhCHHHHHHHHhh---CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCCC-----cHHHHHHHHHHH
Q psy3800           3 WREIIDGAIHRAAGPQLKEECRTL---NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE-----KPALLKSAYQRS   74 (133)
Q Consensus         3 ~~ggVs~AI~~aaG~~l~~ec~~~---~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~~-----~~~~L~~~y~~~   74 (133)
                      .+|||++||+++|||+|++||+++   +++++|++++|++|+|||      |||||+|||.|.     +.+.|++||++|
T Consensus        67 ~gGGV~~AI~~aaG~~L~~ec~~~~~~~~~~~G~a~iT~g~~Lp~------k~VIHtVgP~~~~~~~~~~~~L~~~y~~~  140 (221)
T 3q71_A           67 SRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSSWNLDC------RYVLHVVAPEWRNGSTSSLKIMEDIIREC  140 (221)
T ss_dssp             TSSHHHHHHHHHHCTHHHHHHHHHHHTSCCCTTCEEEEECTTSSS------SEEEEECCCCCTTTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHHHHhccCCCCCCeEEEEcCCCCCC------CEEEEeCCCCCcCCCchHHHHHHHHHHHH
Confidence            468999999999999999999987   489999999999999999      999999999992     458999999999


Q ss_pred             HHHHHHCCCcEEEEccccccccchHH
Q psy3800          75 LEVMKQNNLRSILEVMKQNNLRSIDI  100 (133)
Q Consensus        75 L~~A~~~~~~SIAfPaigtG~~g~~~  100 (133)
                      |++|++++++|||||+||||++|||.
T Consensus       141 L~~A~e~~i~SIAfPaIsTG~~G~P~  166 (221)
T 3q71_A          141 MEITESLSLKSIAFPAIGTGNLGFPK  166 (221)
T ss_dssp             HHHHHHTTCCEEEEECTTSSTTCCCH
T ss_pred             HHHHHHhCCceEeeccccCCCCCCCH
Confidence            99999999999999999999999984

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}

Probab=99.97  E-value=6.7e-31  Score=207.81  Aligned_cols=96  Identities=46%  Similarity=0.720  Sum_probs=90.0

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSAYQRS   74 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~y~~~   74 (133)
                      |..+|||++||+++||++|++||++++++++|++++|++|+|||      +||||+|||.|      .+.+.|++||+++
T Consensus        87 l~~ggGV~~AI~~aaG~~l~~ec~~~g~~~~G~a~iT~~~~L~~------k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~  160 (235)
T 2x47_A           87 LLGGGGVDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLPA------KYVIHTVGPIAYGEPSASQAAELRSCYLSS  160 (235)
T ss_dssp             CSCCSHHHHHHHHHHCHHHHHHHHTSCCCCBTCEEEEECTTSSS------SEEEEEBCCCCTTCCCHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHhCHHHHHHHHHhCCCCCCceEEecCCCCCC------CEEEEecCccccCCCCcchHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999      99999999999      2468999999999


Q ss_pred             HHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          75 LEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        75 L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      |++|++++++|||||+||||++|+|...
T Consensus       161 L~~A~e~~i~SIAfP~IstG~~g~p~~~  188 (235)
T 2x47_A          161 LDLLLEHRLRSVAFPCISTGVFGYPCEA  188 (235)
T ss_dssp             HHHHHHTTCCEEEECCTTCSTTSCCHHH
T ss_pred             HHHHHHhCCceEEeccccCCCCCCCHHH
Confidence            9999999999999999999999998433

>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A

Probab=99.97  E-value=5.9e-31  Score=201.39  Aligned_cols=89  Identities=24%  Similarity=0.256  Sum_probs=85.3

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCCCcHHHHHHHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGEKPALLKSAYQRSLEVMKQ   80 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~~~~~~L~~~y~~~L~~A~~   80 (133)
                      +..+|||++||+++|||+|++||++++++++|++++|++|+|||      |||||+|||.|     |++||+++|++|++
T Consensus        47 l~~ggGV~~aI~~aaG~~l~~ec~~~~~~~~G~a~iT~~~~L~~------k~VIH~vgP~~-----L~~~y~~~L~~a~~  115 (183)
T 4abl_A           47 FNLKAGVSKAILECAGQNVERECSQQAQQRKNDYIITGGGFLRC------KNIIHVIGGND-----VKSSVSSVLQECEK  115 (183)
T ss_dssp             SCCCSTHHHHHHHHHCHHHHHHHHHHHHHSCCSEEEEECTTSBS------SEEEEEETTSC-----HHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHhhHHHHHHHHHhcCCCCCceEEecCCCCCC------CEEEEeCcHHH-----HHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999      99999999975     99999999999999


Q ss_pred             CCCcEEEEccccccccchHH
Q psy3800          81 NNLRSILEVMKQNNLRSIDI  100 (133)
Q Consensus        81 ~~~~SIAfPaigtG~~g~~~  100 (133)
                      ++++|||||+||||++|||.
T Consensus       116 ~~~~SIAfP~IstG~~g~p~  135 (183)
T 4abl_A          116 KNYSSICLPAIGTGNAKQHP  135 (183)
T ss_dssp             TTCCEEEECCTTSSTTCCCH
T ss_pred             cCCCeEeeccccCCCCCcCH
Confidence            99999999999999999984

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A

Probab=99.97  E-value=3.4e-30  Score=191.91  Aligned_cols=97  Identities=23%  Similarity=0.340  Sum_probs=91.2

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC--CcHHHHHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG--EKPALLKSAYQRSLEVM   78 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~--~~~~~L~~~y~~~L~~A   78 (133)
                      +.++|||++||++++|+++++||++++++++|++++|++++||+      +||||+|||.|  .+.+.|++||+++|++|
T Consensus        27 l~~ggGv~~aI~~~~G~~l~~~c~~~g~~~~G~a~it~~~~L~~------~~Vih~vgp~~~~~~~~~L~~~~~~~L~~a  100 (159)
T 2dx6_A           27 LKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPV------RYVIHAAVLGDEPASLETVRKATKSALEKA  100 (159)
T ss_dssp             CCCCSTTHHHHHHHHCTHHHHHHHHHCCCCTTCEEEEECTTSSS------SEEEEEEEESSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHhCHHHHHHHHhcCCCCCCcEEEecCCCCCC------CEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999      99999999999  56889999999999999


Q ss_pred             HHCCCcEEEEccccccccchHHHhh
Q psy3800          79 KQNNLRSILEVMKQNNLRSIDILKG  103 (133)
Q Consensus        79 ~~~~~~SIAfPaigtG~~g~~~~~~  103 (133)
                      ++++++|||||+||||++|+|..+.
T Consensus       101 ~~~~~~sIa~P~igtG~~g~p~~~~  125 (159)
T 2dx6_A          101 VELGLKTVAFPLLGTGVGGLPVEAV  125 (159)
T ss_dssp             HHTTCSEEEECCTTSSTTCCCHHHH
T ss_pred             HHcCCcEEEECCccCCCCCCCHHHH
Confidence            9999999999999999999984433

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*

Probab=99.96  E-value=8.9e-30  Score=192.73  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=82.5

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQR   73 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~   73 (133)
                      |..+|||++||+++|||+|++||+++    +++++|++++|+|| ||+      +||||+|||.|   ++.++|++||++
T Consensus        39 l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~g~-l~~------~~VIHtVgP~~~~~~~~~~L~~~y~~  111 (168)
T 3eti_A           39 LRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENV-LEH------LSVMNAVGPRNGDSRVEGKLCNVYKA  111 (168)
T ss_dssp             CCCCSTTHHHHHHHTTTHHHHHHHHHHTTSCCCCTTEEEEEEEE-ETT------EEEEEEECCCTTSTTHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEecCC-CCc------cEEEEecCCCCCcchHHHHHHHHHHH
Confidence            46789999999999999999999986    89999999999999 999      99999999999   457899999999


Q ss_pred             HHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          74 SLEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      +|+.     .+|||||+||||+||||..+
T Consensus       112 ~L~~-----~~SIAfP~IstG~~g~P~~~  135 (168)
T 3eti_A          112 IAKC-----DGKILTPLISVGIFKVKLEV  135 (168)
T ss_dssp             HHTS-----CSCEEECCTTBSTTCBCHHH
T ss_pred             HHHh-----cCceeecccccCCCCCCHHH
Confidence            9975     38999999999999999433

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*

Probab=99.96  E-value=5.7e-29  Score=193.76  Aligned_cols=100  Identities=23%  Similarity=0.219  Sum_probs=91.3

Q ss_pred             CcccchHHHHHHHhhC----HHHHHHHHh----hCC--CCCCcEEEccCCCCCCCCCCCCceEEEeeCC----CC--CcH
Q psy3800           1 MVWREIIDGAIHRAAG----PQLKEECRT----LNG--CETGDAKITAGYNLPAKLPINAKHVIHTVGP----VG--EKP   64 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG----~~l~~ec~~----~~~--~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP----~~--~~~   64 (133)
                      |.++|||++||++++|    |++++||++    +++  +++|++++|++|+||+   +|+|||||+|||    .|  .+.
T Consensus        46 l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~g~~~~~~G~a~iT~~~~L~~---~g~k~VIH~vgP~~~~~~~~~~~  122 (211)
T 1vhu_A           46 LEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEE---RGIKYVFHTVGPICSGMWSEELK  122 (211)
T ss_dssp             CCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCTTCCEEEECGGGGG---GTCCEEEEEECCCCTTCCCHHHH
T ss_pred             ccCccHHHHHHHHHhCCCchHHHHHHHHHHHHHcCCCcccCCcEEEEECCCCCc---cCcCEEEEecCCccccccCcchH
Confidence            4578999999999999    999999988    577  9999999999999997   566999999999    88  467


Q ss_pred             HHHHHHHHHHHHHHHHCCCcEEEEccccccccchHHHhh
Q psy3800          65 ALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKG  103 (133)
Q Consensus        65 ~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~  103 (133)
                      +.|++||+++|++|++++++|||||+||||++|+|....
T Consensus       123 ~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~a  161 (211)
T 1vhu_A          123 EKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKV  161 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHH
Confidence            899999999999999999999999999999999984333

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*

Probab=99.95  E-value=5.4e-28  Score=184.34  Aligned_cols=89  Identities=18%  Similarity=0.201  Sum_probs=82.1

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQR   73 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~   73 (133)
                      |..+|||++|||++|||+|++||+++    ++++   +++|.|++|++      ++|||+|||.|   +++++|++||++
T Consensus        47 L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~---a~iT~G~~l~t------~~VIHtVGP~~~~~~~~~~L~~~y~~  117 (176)
T 3ejf_A           47 MTHGSGVAKAIADFCGLDFVEYCEDYVKKHGPQQ---RLVTPSFVKGI------QCVNNVVGPRHGDNNLHEKLVAAYKN  117 (176)
T ss_dssp             CCCCSHHHHHHHHHHCHHHHHHHHHHHHHHCCCS---EEEECCCSTTE------EEEEEECCCCTTCSCHHHHHHHHHHT
T ss_pred             cCCCchHHHHHHHHhhHHHHHHHHHHHHhcCCCC---eeecccccccC------CEEEEeCCCCCCCccHHHHHHHHHHH
Confidence            45789999999999999999999876    7777   99999999999      99999999999   567899999999


Q ss_pred             HHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          74 SLEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      +|+    ++++|||||+||||+||||..+
T Consensus       118 ~L~----~~~~SIAfPaIstGi~g~P~~~  142 (176)
T 3ejf_A          118 VLV----DGVVNYVVPVLSLGIFGVDFKM  142 (176)
T ss_dssp             TCC----TTCCEEEEECCCTTSTTCCHHH
T ss_pred             HHH----cCCcEEEECccccCCCCCCHHH
Confidence            998    9999999999999999999543

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A

Probab=99.95  E-value=3.5e-28  Score=184.10  Aligned_cols=90  Identities=17%  Similarity=0.070  Sum_probs=80.2

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCCC------cHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE------KPALLKSAYQRS   74 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~~------~~~~L~~~y~~~   74 (133)
                      |..+|||++||+++||+++     +.+++++|++++|+++   |      |||||+|||.|.      +.++|++||+++
T Consensus        35 l~~ggGV~~aI~~aaG~~l-----~~~~~~~G~a~iT~~~---~------k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~  100 (168)
T 3gpg_A           35 GLPGDGVCKAVYKKWPESF-----KNSATPVGTAKTVMCG---T------YPVIHAVGPNFSNYSESEGDRELAAAYREV  100 (168)
T ss_dssp             CCCCSHHHHHHHHHCGGGG-----TTCCCCTTCEEEEEET---T------EEEEEECCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHhhHHh-----hcCCCCCCCEEEecCC---C------CEEEEeCCCCcCCCCcchHHHHHHHHHHHH
Confidence            4678999999999999976     3689999999999994   7      999999999991      257899999999


Q ss_pred             HHHHHHCCCcEEEEccccccccchHHHhhh
Q psy3800          75 LEVMKQNNLRSILEVMKQNNLRSIDILKGR  104 (133)
Q Consensus        75 L~~A~~~~~~SIAfPaigtG~~g~~~~~~~  104 (133)
                      |++|++++++|||||+||||+||||..+.+
T Consensus       101 L~~A~~~~~~SIAfP~IstGi~g~P~~~aa  130 (168)
T 3gpg_A          101 AKEVTRLGVNSVAIPLLSTGVYSGGKDRLT  130 (168)
T ss_dssp             HHHHHHHTCSEEEEECTTSSTTSTTSCCHH
T ss_pred             HHHHHHhCCcEEEECccccCCCCCCHHHHH
Confidence            999999999999999999999999854433

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*

Probab=99.94  E-value=2.1e-27  Score=179.76  Aligned_cols=90  Identities=24%  Similarity=0.286  Sum_probs=80.0

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCCC------cHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE------KPALLKSAYQRS   74 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~~------~~~~L~~~y~~~   74 (133)
                      |..+|||++||++++|++++     .+++++|++++|++   ++      |||||+|||.|.      +.+.|++||+++
T Consensus        29 l~~ggGV~~aI~~aaG~~l~-----~~~~~~G~a~iT~~---~~------k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~   94 (168)
T 3gqe_A           29 GQPGGGVCGALYKKFPESFD-----LQPIEVGKARLVKG---AA------KHIIHAVGPNFNKVSEVEGDKQLAEAYESI   94 (168)
T ss_dssp             SCCTTGGGSHHHHHCGGGCC-----CCCCCTTCEEEECC---TT------CCEEEEECCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHhhHHhc-----CCCcCCCcEEEEcC---CC------CEEEEcCCCccCCCCchhHHHHHHHHHHHH
Confidence            45789999999999999763     68999999999998   47      999999999992      257899999999


Q ss_pred             HHHHHHCCCcEEEEccccccccchHHHhhh
Q psy3800          75 LEVMKQNNLRSILEVMKQNNLRSIDILKGR  104 (133)
Q Consensus        75 L~~A~~~~~~SIAfPaigtG~~g~~~~~~~  104 (133)
                      |++|++++++|||||+||||+||||..+.+
T Consensus        95 L~~a~~~~~~SIAfP~IstG~~g~p~~~aa  124 (168)
T 3gqe_A           95 AKIVNDNNYKSVAIPLLSTGIFSGNKDRLT  124 (168)
T ss_dssp             HHHHHHTTCSEEEEECTTSSTTSCSSCCHH
T ss_pred             HHHHHHcCCCEEEECCcccCCCCCCHHHHH
Confidence            999999999999999999999999954443

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*

Probab=99.94  E-value=5.1e-27  Score=179.50  Aligned_cols=91  Identities=24%  Similarity=0.348  Sum_probs=81.7

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQR   73 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~   73 (133)
                      |..+|||++||+++||++|++||+++    +++++|++++|++|+||       +||||+|||.|   ++++.|++||++
T Consensus        49 l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~~~L~-------~~VIH~vgP~~~~~~~~~~L~~~y~~  121 (182)
T 2acf_A           49 LKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLA-------KKCLHVVGPNLNAGEDIQLLKAAYEN  121 (182)
T ss_dssp             CCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEECTTTC-------SEEEEECCCCGGGTCCTTHHHHHHHG
T ss_pred             CCCCchHHHHHHHHhCHHHHHHHHHHHHHcCCCCCCcEEEeeCCCCC-------ceEEEECCCCCCCCchHHHHHHHHHH
Confidence            46789999999999999999999864    89999999999999995       68999999999   567899999998


Q ss_pred             HHHHHHHCCCcEEEEccccccccchHHHhhh
Q psy3800          74 SLEVMKQNNLRSILEVMKQNNLRSIDILKGR  104 (133)
Q Consensus        74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~~~~  104 (133)
                      +      ++++|||||+||||++|||..+.+
T Consensus       122 ~------~~~~SIAfP~IstGi~G~p~~~aa  146 (182)
T 2acf_A          122 F------NSQDILLAPLLSAGIFGAKPLQSL  146 (182)
T ss_dssp             G------GGSSEEEECCTTCGGGCCCHHHHH
T ss_pred             h------cCCCEEEECCcccCCCCCCHHHHH
Confidence            6      799999999999999999954433

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*

Probab=99.93  E-value=2.6e-26  Score=177.31  Aligned_cols=88  Identities=15%  Similarity=0.170  Sum_probs=79.6

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC--CcHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG--EKPALLKSAYQRS   74 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~--~~~~~L~~~y~~~   74 (133)
                      |..+|||++||+++||++|++||+++    +++++|++++|++|+|         ||||+|||.|  ++.++|++||+++
T Consensus        67 L~~ggGV~~AI~~aaG~~l~~ec~~l~~~~g~~~~G~a~iT~~~~L---------~VIHtVGP~~~~~~~~~L~~~y~~~  137 (193)
T 3ejg_A           67 LAHGGGLAKALDVYTKGKLQRLSKEHIGLAGKVKVGTGVMVECDSL---------RIFNVVGPRKGKHERDLLIKAYNTI  137 (193)
T ss_dssp             CCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEEETTE---------EEEEEECCCSSTTHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHhhHHHHHHHHHHHHHcCCCCCCCEEEecCCCe---------eEEEecCCCCCchHHHHHHHHHHHH
Confidence            46789999999999999999999875    8999999999999986         8999999999  4678999999999


Q ss_pred             HHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          75 LEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        75 L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      |+.     .+|||||+||||++|||..+
T Consensus       138 L~~-----~~SIAfPaIstGi~G~P~~~  160 (193)
T 3ejg_A          138 NNE-----QGTPLTPILSCGIFGIKLET  160 (193)
T ss_dssp             HHS-----SSCEEECCTTCGGGCCCHHH
T ss_pred             HHh-----cCceeecccccCCCCCCHHH
Confidence            973     37999999999999999433

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*

Probab=99.93  E-value=4.1e-26  Score=184.94  Aligned_cols=94  Identities=12%  Similarity=0.006  Sum_probs=85.2

Q ss_pred             CcccchHHHHHHHhhC-HHHHHHHHhh---CCCCCCcEEEccCC----------CCCCCCCCCCceEEEeeCCCC--C--
Q psy3800           1 MVWREIIDGAIHRAAG-PQLKEECRTL---NGCETGDAKITAGY----------NLPAKLPINAKHVIHTVGPVG--E--   62 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG-~~l~~ec~~~---~~~~~G~~viT~~~----------~L~~~~~~~~k~IIH~VgP~~--~--   62 (133)
                      +..+|||++||++++| +.+++||++.   +.+++|++++|+++          +|||      |||||+|||.|  .  
T Consensus        83 l~~gGGVd~AI~raaGg~~l~~ec~~~~~~g~~~~G~a~iT~~~~~~~~~~~~~~L~~------k~VIHtvgp~~~~~~~  156 (284)
T 1njr_A           83 GYLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGI------RYIIHVPTVVAPSAPI  156 (284)
T ss_dssp             CCCCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEEEEGGGGGCC----CCTTE------EEEEECCCBSCSSSCS
T ss_pred             CCCCchHHHHHHHhhCcHHHHHHHHHHHhcCCCCCCeEEEEECCcccccccchhcCCC------CEEEEeCCCccCCCCC
Confidence            3578999999999965 7889999884   88999999999999          9999      99999999998  2  


Q ss_pred             ---------cHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchHHH
Q psy3800          63 ---------KPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDIL  101 (133)
Q Consensus        63 ---------~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~  101 (133)
                               ..+.|++||+++|++| +++++|||||+||||++|+|..
T Consensus       157 ~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~~  203 (284)
T 1njr_A          157 FNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPPI  203 (284)
T ss_dssp             CCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCHH
Confidence                     2488999999999999 9999999999999999999843

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}

Probab=99.92  E-value=4e-25  Score=167.58  Aligned_cols=90  Identities=19%  Similarity=0.186  Sum_probs=79.7

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC--CcHHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG--EKPALLKSAYQRS   74 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~--~~~~~L~~~y~~~   74 (133)
                      |.++|||++||++++||+|++||+++    +++++|++++|++++|         ||||+|||.|  ++.+.|++||+++
T Consensus        46 l~~ggGv~~AI~~aaG~~l~~ec~~~~~~~g~~~~G~a~iT~~~~l---------~VIH~vgP~~~~~~~~~L~~~y~~~  116 (174)
T 2vri_A           46 LLHGGGVARAIDILTEGQLQSLSKDYISSNGPLKVGAGVMLECEKF---------NVFNVVGPRTGKHEHSLLVEAYNSI  116 (174)
T ss_dssp             CCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCSCCTTCEEEEECSSC---------EEEEEECCCSSTTHHHHHHHHHHHH
T ss_pred             CCCCCcHhHHHHHHhhHHHHHHHHHHHHhcCCCCCCeEEEEECCCC---------EEEEEcCCCCCcchHHHHHHHHHHH
Confidence            56789999999999999999999874    8999999999999874         9999999999  3578999999999


Q ss_pred             HHHHHHCCCcEEEEccccccccchHHHhhh
Q psy3800          75 LEVMKQNNLRSILEVMKQNNLRSIDILKGR  104 (133)
Q Consensus        75 L~~A~~~~~~SIAfPaigtG~~g~~~~~~~  104 (133)
                      |+.   +  +|||||+||||++|+|..+.+
T Consensus       117 L~~---~--~SIAfP~IstG~~g~p~~~aa  141 (174)
T 2vri_A          117 LFE---N--GIPLMPLLSCGIFGVRIENSL  141 (174)
T ss_dssp             HHS---S--SCEEEECSSCGGGCCCHHHHH
T ss_pred             Hhh---C--CcEEeCccccCCCCCCHHHHH
Confidence            985   3  499999999999999854433

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=99.91  E-value=6.7e-25  Score=190.65  Aligned_cols=104  Identities=25%  Similarity=0.326  Sum_probs=87.4

Q ss_pred             cccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcHHHHHHHHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKPALLKSAYQRSL   75 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~~~L~~~y~~~L   75 (133)
                      +.+|||++|||++||+++.+     +.+++|++++|+++   .      |||||+|||+|      +..++|++||+++|
T Consensus       370 ~gGgGVdGAIhraaG~~ll~-----~~~~tG~AkIT~g~---a------KyIIHtVGPvw~~g~~~E~~~lLascYrnsL  435 (670)
T 4gua_A          370 RPGEGVCRAIYKRWPTSFTD-----SATETGTARMTVCL---G------KKVIHAVGPDFRKHPEAEALKLLQNAYHAVA  435 (670)
T ss_dssp             CCCSSHHHHHHHHCGGGGTT-----CCCCTTCEEEEEET---T------EEEEEECCCCTTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCcCCHhHHHHHHhhHHHhc-----CCCCcceEEEecCC---C------ceEEEcCCCCccCCCCchHHHHHHHHHHHHH
Confidence            56899999999999998765     57899999999999   5      99999999999      23468999999999


Q ss_pred             HHHHHCCCcEEEEccccccccchHHHhhhhhhHHHHHhhhhhhhhhhhcCE
Q psy3800          76 EVMKQNNLRSILEVMKQNNLRSIDILKGRQQKWRYRLCMTFSRNILIRGQM  126 (133)
Q Consensus        76 ~~A~~~~~~SIAfPaigtG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (133)
                      ++|.+++++|||||+||||+||||  |+.     ..+.++-++.+|.+++|
T Consensus       436 kLA~e~~~kSIAFPLISTGIYG~P--Kda-----l~IAl~~I~~fL~~~D~  479 (670)
T 4gua_A          436 DLVNEHNIKSVAIPLLSTGIYAAG--KDR-----LEVSLNCLTTALDRTDA  479 (670)
T ss_dssp             HHHHHTTCSEEEECCTTSSSTTTT--SCC-----HHHHHHHHHHHHTTSSC
T ss_pred             HHHHHcCCcEEEEccccccCCCCC--HHH-----HHHHHHHHHHHHhccCC
Confidence            999999999999999999999998  553     23444555556655543

>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*

Probab=99.85  E-value=3.9e-21  Score=141.89  Aligned_cols=89  Identities=8%  Similarity=0.014  Sum_probs=79.1

Q ss_pred             cccchHHHHHHHhhCHHHHHHHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCC-C---CcHHHHHHHHHHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-G---EKPALLKSAYQRSLEV   77 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~-~---~~~~~L~~~y~~~L~~   77 (133)
                      +|++||++||+++++ ++ +||++ +.+++|++++|+++   +      +||||+++|. |   .+.+.|++||+++++.
T Consensus        36 ~~G~Gva~ai~~~~p-~~-~~~~~-~~~~~G~a~it~~~---~------~~Vih~v~~~~~~~~~~~~~l~~~l~~~l~~  103 (149)
T 2eee_A           36 RMGAGIAVLFKKKFG-GV-QELLN-QQKKSGEVAVLKRD---G------RYIYYLITKKRASHKPTYENLQKSLEAMKSH  103 (149)
T ss_dssp             CCCSTTHHHHHHHTC-CH-HHHHT-TCCCTTCEEEEESS---S------SEEEEEEEESSTTSCCCHHHHHHHHHHHHHH
T ss_pred             CcCCcHHHHHHHHCc-HH-HHHhc-ccCCCccEEEEEcC---C------CEEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999995 45 57765 68999999999984   5      9999999998 6   5678999999999999


Q ss_pred             HHHCCCcEEEEccccccccchHHHh
Q psy3800          78 MKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        78 A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      |++++++|||||+||||++|+|..+
T Consensus       104 a~~~~~~sIa~P~IgtG~~G~~~~~  128 (149)
T 2eee_A          104 CLKNGVTDLSMPRIGCGLDRLQWEN  128 (149)
T ss_dssp             HHHHTCCEEECCCCCCTTTTCCHHH
T ss_pred             HHHcCCCEEEeCCCCCCCCCCCHHH
Confidence            9999999999999999999998443

>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A

Probab=99.81  E-value=9.4e-20  Score=135.36  Aligned_cols=90  Identities=10%  Similarity=-0.014  Sum_probs=79.1

Q ss_pred             cccchHHHHHHHhhCHHHHHHHHh----hCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCC-C---C------cHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKEECRT----LNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-G---E------KPALL   67 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~ec~~----~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~-~---~------~~~~L   67 (133)
                      +|++||++||++++ |++++++++    .+++++|++++|+++  +.      +||||+++|. |   .      ..+.|
T Consensus        33 ~~G~Gva~ai~~~~-p~~~~~~~~~~~~~~~~~~G~~~i~~~~--~~------~~Vi~~v~~~~~~~~~~~~~~~~~~~l  103 (158)
T 2fg1_A           33 GWGKGFVLALSKKW-KMPEEAYRQWYKSQEEFTLGAVQFVNVE--NK------LYVANMIGQHGIYKDSKGLPPIRYDAV  103 (158)
T ss_dssp             CCCSTHHHHHHHHC-SHHHHHHHHHHHHTSSCSTTCEEEEEEE--TT------EEEEEEEEESSSSCCTTCCCSBCHHHH
T ss_pred             CcCccHHHHHHHHC-ChHHHHHHHHHhhccCcCCccEEEEecC--CC------eEEEEEEEEcccCCCCCCCccccHHHH
Confidence            68999999999999 777777554    578999999999985  24      8999999998 6   1      58899


Q ss_pred             HHHHHHHHHHHHHCCCcEEEEccccccccchHHH
Q psy3800          68 KSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDIL  101 (133)
Q Consensus        68 ~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~  101 (133)
                      ++||+++++.|++++. |||||.||||++|+|..
T Consensus       104 ~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~  136 (158)
T 2fg1_A          104 RQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWE  136 (158)
T ss_dssp             HHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHH
T ss_pred             HHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHH
Confidence            9999999999999997 99999999999999843

>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A

Probab=97.78  E-value=2.6e-05  Score=62.75  Aligned_cols=51  Identities=12%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             eEEEeeCCCC----------CcHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          52 HVIHTVGPVG----------EKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        52 ~IIH~VgP~~----------~~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      -||.++.|++          +..+.|++.++++|..|.++|+++|++||+|+|+||.|...
T Consensus       171 ~vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~  231 (277)
T 3sig_A          171 AFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQ  231 (277)
T ss_dssp             EEEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHH
T ss_pred             EEEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHH
Confidence            4788888987          23578999999999999999999999999999999998433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1yd9a1	188	c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt	1e-11
d1vhua_	192	c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo	8e-11
d1njra_	264	c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker'	3e-10
d1spva_	172	c.50.1.2 (A:) Hypothetical protein YmbD {Escherich	2e-09
d2acfa1	168	c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA	2e-09
d2fg1a1	154	c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba	5e-05

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.0 bits (137), Expect = 1e-11
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 13/87 (14%)

Query: 7   IDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPV-- 60
           +   + +  G +  E    L       E   A ++AG+ LP      AK VIH   PV  
Sbjct: 45  VGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLP------AKFVIHCNSPVWG 98

Query: 61  -GEKPALLKSAYQRSLEVMKQNNLRSI 86
             +   LL+   +  L +     L+SI
Sbjct: 99  SDKCEELLEKTVKNCLALADDRKLKSI 125

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.8 bits (131), Expect = 8e-11
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 7   IDGAIHRAAGP----------QLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHT 56
           +  AI +A             +   E    +  + G+  +T   NL  +     K+V HT
Sbjct: 43  VAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEER---GIKYVFHT 99

Query: 57  VGPV------GEKPALLKSAYQRSLEVMKQNNLRSI 86
           VGP+       E    L  A+   LE  ++  + SI
Sbjct: 100 VGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESI 135

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (129), Expect = 3e-10
 Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 20/101 (19%)

Query: 7   IDGAIHRAAGPQLKEECR--------------TLNGCETGDAKITAGYNLPAKLPINAKH 52
            D A++   G +  E                 T+   +    + T       +  I+   
Sbjct: 74  FDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPT 133

Query: 53  VIHTVGPVGEKPALLKSAYQ------RSLEVMKQNNLRSIL 87
           V+    P+      LK+ ++       +  +    ++  ++
Sbjct: 134 VVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDGLI 174

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (121), Expect = 2e-09
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 7   IDGAIHRAAGPQLKEECRTLN----GCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE 62
           +DGAIHRAAGP L + C  +      C TG A IT   +LPAK  ++        G    
Sbjct: 32  VDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHT-VGPVWRGGEQN 90

Query: 63  KPALLKSAYQRSLEVMKQNNLRSIL 87
           +  LL+ AY  SL ++  N+  S+ 
Sbjct: 91  EDQLLQDAYLNSLRLVAANSYTSVA 115

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 7   IDGAIHRAAGPQLKEEC----RTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVGE 62
           + GA+++A    +++E     +       G + + +G+NL  K      HV+      GE
Sbjct: 48  VAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKK----CLHVVGPNLNAGE 103

Query: 63  KPALLKSAYQ 72
              LLK+AY+
Sbjct: 104 DIQLLKAAYE 113

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 38.6 bits (89), Expect = 5e-05
 Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 17/92 (18%)

Query: 7   IDGAIHRAAGP---QLKEECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-- 61
              A+ +         ++  ++      G  +     N          +V + +G  G  
Sbjct: 34  FVLALSKKWKMPEEAYRQWYKSQEEFTLGAVQFVNVEN--------KLYVANMIGQHGIY 85

Query: 62  ----EKPALLKSAYQRSLEVMKQNNLRSILEV 89
                 P +   A ++ L+ +    +     V
Sbjct: 86  KDSKGLPPIRYDAVRQCLKEVALFTIAHKASV 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1yd9a1	188	Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax	99.96
d1spva_	172	Hypothetical protein YmbD {Escherichia coli [TaxId	99.96
d1vhua_	192	Hypothetical protein AF1521 {Archaeon Archaeoglobu	99.93
d2acfa1	168	Replicase polyprotein 1ab {SARS coronavirus [TaxId	99.9
d1njra_	264	Hypothetical protein Ymr087W {Baker's yeast (Sacch	99.79
d2fg1a1	154	Hypothetical protein BT1257 {Bacteroides thetaiota	99.66

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=4.8e-29  Score=187.93  Aligned_cols=95  Identities=23%  Similarity=0.285  Sum_probs=88.7

Q ss_pred             cccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQRS   74 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~~   74 (133)
                      .++||+++||++++|++|++||+++    +++++|++++|++|+|||      +||||+|+|.|   .+.+.|++||+++
T Consensus        40 ~~~~gv~~ai~~~~G~~l~~e~~~~~~~~~~~~~g~~~vT~~~~L~~------k~IiH~v~P~~~~~~~~~~L~~~~~~~  113 (188)
T d1yd9a1          40 YIGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPA------KFVIHCNSPVWGSDKCEELLEKTVKNC  113 (188)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEECTTSSS------SEEEEECCCCTTSTTHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCeeecccCCCCc------eEEeeeccccCCCcchHHHHHHHHHHH
Confidence            4689999999999999999999754    889999999999999999      99999999999   6778999999999


Q ss_pred             HHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          75 LEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        75 L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                      |+.|++++++|||||+||||.+|+|...
T Consensus       114 L~~a~~~~~~SIafP~igtG~~g~p~~~  141 (188)
T d1yd9a1         114 LALADDRKLKSIAFPSIGSGRNGFPKQT  141 (188)
T ss_dssp             HHHHHHTTCSEEEECCCSBSTTCBCHHH
T ss_pred             HHHHHHcCCCeEEeccccCCCCCCCHHH
Confidence            9999999999999999999999998433

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.2e-28  Score=182.48  Aligned_cols=94  Identities=39%  Similarity=0.574  Sum_probs=88.1

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC-----CcHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG-----EKPALLKSAY   71 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~-----~~~~~L~~~y   71 (133)
                      |..+||+++||++++|+++++||++.    +++++|++++|++++|||      |||||+|+|.|     .+.++|++||
T Consensus        26 l~~~~gv~~ai~~~~G~~~~~~~~~~~~~~g~~~~g~~~~T~~~~l~~------k~IiH~v~P~~~~~~~~~~~~l~~~~   99 (172)
T d1spva_          26 LMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPA------KAVVHTVGPVWRGGEQNEDQLLQDAY   99 (172)
T ss_dssp             CSCCSHHHHHHHHHHCHHHHHHHHHHHHHHCSCCTTCEEEECCTTSSS------SEEEEECCCCCSSSSSSHHHHHHHHH
T ss_pred             ccCCCcHHHHHHHHcCCchHHHHHHHHHHhCCCCCCCEEEEEcCCCCC------cEEEEeccccccCCchHHHHHHHHHH
Confidence            45789999999999999999999764    899999999999999999      99999999998     5677899999


Q ss_pred             HHHHHHHHHCCCcEEEEccccccccchHH
Q psy3800          72 QRSLEVMKQNNLRSILEVMKQNNLRSIDI  100 (133)
Q Consensus        72 ~~~L~~A~~~~~~SIAfPaigtG~~g~~~  100 (133)
                      +++|+.|++++++|||||+||||++|+|.
T Consensus       100 ~~~L~~a~~~~~~sIa~P~lgtG~~g~p~  128 (172)
T d1spva_         100 LNSLRLVAANSYTSVAFPAISTGVYGYPR  128 (172)
T ss_dssp             HHHHHHHHHTTCSEEEECCTTSSTTCCCH
T ss_pred             HHHHHHHHHcCCCEEEeccccCCCCCCCH
Confidence            99999999999999999999999999984

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=4.7e-27  Score=177.23  Aligned_cols=101  Identities=24%  Similarity=0.208  Sum_probs=84.1

Q ss_pred             CcccchHHHHHHHhhCHHHH--HHH--------HhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC------CcH
Q psy3800           1 MVWREIIDGAIHRAAGPQLK--EEC--------RTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG------EKP   64 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~--~ec--------~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~------~~~   64 (133)
                      |..+||+++||++++|++.+  .++        ...+++++|++++|++|+||+   .+||||||+|+|.|      +..
T Consensus        37 l~~~gGv~~aI~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~T~~~~L~~---~~~k~ViH~v~P~~~~~~~~~~~  113 (192)
T d1vhua_          37 LEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMNLEE---RGIKYVFHTVGPICSGMWSEELK  113 (192)
T ss_dssp             CCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCTTCCEEEECGGGGG---GTCCEEEEEECCCCTTCCCHHHH
T ss_pred             cCCCCcHHHHHHHhhCchhHhHHHHHHHHHHHhhcCCCCCCCcEEEEecccCCc---ccccEEEEEeeecccCCCcchhH
Confidence            45689999999999986532  222        223689999999999999985   34599999999998      245


Q ss_pred             HHHHHHHHHHHHHHHHCCCcEEEEccccccccchHHHhhh
Q psy3800          65 ALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGR  104 (133)
Q Consensus        65 ~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~~  104 (133)
                      +.|++||+++|+.|++++++|||||+||||++|+|....+
T Consensus       114 ~~L~~~~~~~L~~A~~~~~~SIA~P~lgtG~~g~p~~~~a  153 (192)
T d1vhua_         114 EKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVV  153 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEecCccCCCCCCCHHHHH
Confidence            6799999999999999999999999999999999954444

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

Probab=99.90  E-value=5.3e-24  Score=157.96  Aligned_cols=89  Identities=26%  Similarity=0.371  Sum_probs=78.5

Q ss_pred             CcccchHHHHHHHhhCHHHHHHHHhh----CCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC---CcHHHHHHHHHH
Q psy3800           1 MVWREIIDGAIHRAAGPQLKEECRTL----NGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG---EKPALLKSAYQR   73 (133)
Q Consensus         1 ~~~~ggVs~AI~~aaG~~l~~ec~~~----~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~---~~~~~L~~~y~~   73 (133)
                      +.++||||+||+++||++|++||++.    +++++|++++|++++| +      ++|||+|+|+|   ...++|+.||++
T Consensus        42 l~~~gGvs~AI~~~aG~~l~~e~~~~~~~~g~~~~G~~v~t~g~~l-~------k~IiH~v~P~~~~~~~~~ll~~~~~~  114 (168)
T d2acfa1          42 LKHGGGVAGALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNL-A------KKCLHVVGPNLNAGEDIQLLKAAYEN  114 (168)
T ss_dssp             CCCCSHHHHHHHHHTTTHHHHHHHHHHHHHCCCCTTCEEEEECTTT-C------SEEEEECCCCGGGTCCTTHHHHHHHG
T ss_pred             cCCCChHHHHHHHHhCHHHHHHHHHHHHhcCCCcCCCeEeccCcCc-c------hhheeecCCCcccccHHHHHHHHHHh
Confidence            35789999999999999999999764    8899999999999999 4      79999999999   666788888865


Q ss_pred             HHHHHHHCCCcEEEEccccccccchHHHh
Q psy3800          74 SLEVMKQNNLRSILEVMKQNNLRSIDILK  102 (133)
Q Consensus        74 ~L~~A~~~~~~SIAfPaigtG~~g~~~~~  102 (133)
                            .++++|||||+||||++|+|...
T Consensus       115 ------~~~~~sIA~PaigtG~~g~p~~~  137 (168)
T d2acfa1         115 ------FNSQDILLAPLLSAGIFGAKPLQ  137 (168)
T ss_dssp             ------GGGSSEEEECCTTCGGGCCCHHH
T ss_pred             ------hccCceEEecccccCCCCCChHH
Confidence                  57899999999999999998443

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.5e-19  Score=143.22  Aligned_cols=97  Identities=12%  Similarity=0.061  Sum_probs=78.2

Q ss_pred             cccchHHHHHHHhhC-HHHHHHHHhh---CCCCCCcEEEccC----------CCCCCCCCCCCceEEEe---eCCCC---
Q psy3800           2 VWREIIDGAIHRAAG-PQLKEECRTL---NGCETGDAKITAG----------YNLPAKLPINAKHVIHT---VGPVG---   61 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG-~~l~~ec~~~---~~~~~G~~viT~~----------~~L~~~~~~~~k~IIH~---VgP~~---   61 (133)
                      .++|||++||++++| +.+++++++.   +.+++|++++|.+          +||+|      +||||+   |+|.|   
T Consensus        69 ~mgGGvd~AI~~a~Gg~~le~~~r~~i~~~~~pvG~a~iv~~g~~~~~~~~~~nl~~------kyVIHaPTMv~P~~~~~  142 (264)
T d1njra_          69 YLGGGFDKALYNYFGGKPFETWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGI------RYIIHVPTVVAPSAPIF  142 (264)
T ss_dssp             CCCSSHHHHHHHHHTSHHHHHHHHHHTTTSCCCTTCCEEEEGGGGGCC----CCTTE------EEEEECCCBSCSSSCSC
T ss_pred             CCCccHHHHHHHhhCcHHHHHHHHHHHhhcCCCCCceEEeccCCccccccccccCCC------CEEEECcccccCCCCCC
Confidence            468999999999966 5588888764   5588999888754          58888      999999   78876   


Q ss_pred             -------CcHHHHHHHHHHHHHHHHHCCCcEEEEccccccccchHHHhhhh
Q psy3800          62 -------EKPALLKSAYQRSLEVMKQNNLRSILEVMKQNNLRSIDILKGRQ  105 (133)
Q Consensus        62 -------~~~~~L~~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~~~~~~  105 (133)
                             ...+.+.+|++++|. +.+++++|||||+||||++|+|....+.
T Consensus       143 ~~~~~~~~~~~~l~~a~~~~L~-a~e~~i~SIAfPaigTGvgg~p~~~aAr  192 (264)
T d1njra_         143 NPQNPLKTGFEPVFNAMWNALM-HSPKDIDGLIIPGLCTGYAGVPPIISCK  192 (264)
T ss_dssp             CTTCHHHHTHHHHHHHHHHHHH-TSCTTCSEEEECCTTCSTTCCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-HhhcCCCEEEeCccccCCCCcCHHHHHH
Confidence                   133678899999986 4577999999999999999998655443

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.66  E-value=2.4e-16  Score=113.25  Aligned_cols=90  Identities=10%  Similarity=0.006  Sum_probs=73.1

Q ss_pred             cccchHHHHHHHhhCHHHHH---HHHhhCCCCCCcEEEccCCCCCCCCCCCCceEEEeeCCCC----------CcHHHHH
Q psy3800           2 VWREIIDGAIHRAAGPQLKE---ECRTLNGCETGDAKITAGYNLPAKLPINAKHVIHTVGPVG----------EKPALLK   68 (133)
Q Consensus         2 ~~~ggVs~AI~~aaG~~l~~---ec~~~~~~~~G~~viT~~~~L~~~~~~~~k~IIH~VgP~~----------~~~~~L~   68 (133)
                      .|++||++||.+++|...++   .|++.+.+++|++.+|++++  +      ++|+|.++|.+          ...+.|+
T Consensus        29 ~mG~GiA~ai~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~------~~I~~~~~~~~~~~~~~~~~~~~~~~l~  100 (154)
T d2fg1a1          29 GWGKGFVLALSKKWKMPEEAYRQWYKSQEEFTLGAVQFVNVEN--K------LYVANMIGQHGIYKDSKGLPPIRYDAVR  100 (154)
T ss_dssp             CCCSTHHHHHHHHCSHHHHHHHHHHHHTSSCSTTCEEEEEEET--T------EEEEEEEEESSSSCCTTCCCSBCHHHHH
T ss_pred             cccchHHHHHHHHcCcHHHHHHHHhhhccCCCCCcEEEEECCC--c------eEEEEEEeEeCCCCCcCCccHHHHHHHH
Confidence            57999999999998864443   35556789999999999874  5      89999998865          2346789


Q ss_pred             HHHHHHHHHHHHCCCcEEEEccccccccchHH
Q psy3800          69 SAYQRSLEVMKQNNLRSILEVMKQNNLRSIDI  100 (133)
Q Consensus        69 ~~y~~~L~~A~~~~~~SIAfPaigtG~~g~~~  100 (133)
                      +|+++.+..+++++ +|||||+||||++|+|.
T Consensus       101 ~~l~~l~~~~~~~~-~sIa~P~Ig~Gi~G~~w  131 (154)
T d2fg1a1         101 QCLKEVALFTIAHK-ASVHMPRIGCGLAGGKW  131 (154)
T ss_dssp             HHHHHHHHHHHHHT-CEEEECCTTCSTTCCCH
T ss_pred             HHHHHHHHHHHhcC-cEEEeCcccCCCCCCCH
Confidence            99988877776655 79999999999999983