Psyllid ID: psy3825

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MRIATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCRPNM
Secondary Structure (PSIPRED)
cEEEEccccccEEEEEEcEEEEEccccccccccccccccEEEcccccEEcccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEccccccccccccHHHHHHHHccccEEEEEcccccccccccccccccEEEEEEEEcccccEEEccccccccccccEEEEccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHccccHHHHHccccccccccEEEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEccccccccccEEEEcEEEEEEccccccccccHHHccEEEcccccEEEccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccHHHHHHHHccccEEEEEEcccccEEEEccccccccEEEEEEEcccccEEEEEEEccccHHHHHHHHHHEEccccccccccccEEEEEcccccccccccccHHHHHHHcccEEEEEEccccEEEEcccccccccEEEEEEEcccccEEEEEEEEcccHHHHHHHHHHHHHHccEHHHHHcccccccccHHHHEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mriatgasmdkvFEDTYDTVLMAIGRRALteetavsnagvkvipenakidsdneqtnipnvfavgdvlhekpeltpVAVQAGKLLAARLygngttqmdyqnvattvftpleygcvglseekaeelygadnleiyhayykpteffipqrnpqrcyLKFIYHayykpteffipqrnpqrcyLKVIYHAyykpteffipqrnpqrcYLKIYHAyykpteffipqrnpqrcYLKIYHAyykpteffipqrnpqrcylkvvceraapqkvlgmhfigpnaGEVIQGYAAAVKCGLTFetlestvgihptlaeefTRVTitkrsgedptpqsccrpnm
Flexible Loop (DISEMBL)
mriatgasmdkvfeDTYDTVLMAIGRRAlteetavsnagvkvipenakidsdneqtnIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEStvgihptlaeeftrvtitkrsgedptpqsccrpnm
Low Complexity Region (SEG)
MRIATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCRPNM
Disordered region (IsUnstruct)
**********KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIP***********TNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI******************
Disordered Region (DISOPRED)
MRIAT**SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT**********SCC****
Disordered Region (DISEMBL)
********MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITK****************
Disordered Region (DISPRO)
MRI*TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKR***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCRPNM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
P91938	596	Thioredoxin reductase 1,	no	N/A	0.650	0.362	0.444	7e-65
Q9VNT5	516	Thioredoxin reductase 2,	no	N/A	0.650	0.418	0.425	2e-63
O62768	499	Thioredoxin reductase 1,	no	N/A	0.683	0.454	0.377	7e-54
O89049	499	Thioredoxin reductase 1,	no	N/A	0.680	0.452	0.363	1e-53
Q9JLT4	524	Thioredoxin reductase 2,	yes	N/A	0.644	0.408	0.380	4e-53
Q9Z0J5	526	Thioredoxin reductase 2,	yes	N/A	0.644	0.406	0.380	5e-53
Q5NVA2	499	Thioredoxin reductase 1,	yes	N/A	0.683	0.454	0.365	5e-53
Q9MYY8	499	Thioredoxin reductase 1,	no	N/A	0.683	0.454	0.361	9e-53
Q16881	649	Thioredoxin reductase 1,	no	N/A	0.683	0.349	0.361	1e-52
Q9N2I8	511	Thioredoxin reductase 2,	yes	N/A	0.662	0.430	0.379	2e-52

>sp|P91938|TRXR1_DROME Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2

 Score =  247 bits (631), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 140/315 (44%), Positives = 171/315 (54%), Gaps = 99/315 (31%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           ED YDTVL AIGR+ L ++  + NAGV V  +   +DS  E TN+ N++AVGD+++ KPE
Sbjct: 380 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDS-QEATNVANIYAVGDIIYGKPE 438

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVAV AG+LLA RLYG  T +MDY++VATTVFTPLEY CVGLSEE A + +GAD +E+
Sbjct: 439 LTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEV 498

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
                                                             +H YYKPTEF
Sbjct: 499 --------------------------------------------------FHGYYKPTEF 508

Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
           FIPQ++ + CYL                                                
Sbjct: 509 FIPQKSVRYCYL------------------------------------------------ 520

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313
           K V ER   Q+V G+H+IGP AGEVIQG+AAA+K GLT  TL +TVGIHPT AEEFTR+ 
Sbjct: 521 KAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLA 580

Query: 314 ITKRSGEDPTPQSCC 328
           ITKRSG DPTP SCC
Sbjct: 581 ITKRSGLDPTPASCC 595

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 9

>sp|Q9VNT5|TRXR2_DROME Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=2 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/315 (42%), Positives = 171/315 (54%), Gaps = 99/315 (31%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
            D +DTVL AIGR+ L E+  +  AGVK   +   +D+  E T++P++FAVGD+++ +PE
Sbjct: 300 SDVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDA-AEATSVPHIFAVGDIIYGRPE 358

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVA+ +G+LLA RL+   T  MDY +VATTVFTPLEY CVG+SEE A EL GADN+E+
Sbjct: 359 LTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCVGMSEETAIELRGADNIEV 418

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
                                                             +H YYKPTEF
Sbjct: 419 --------------------------------------------------FHGYYKPTEF 428

Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
           FIPQ++ + CYL                                                
Sbjct: 429 FIPQKSVRHCYL------------------------------------------------ 440

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313
           K V E +  QK+LG+H+IGP AGEVIQG+AAA+K GLT +TL +TVGIHPT AEEFTR++
Sbjct: 441 KAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRLS 500

Query: 314 ITKRSGEDPTPQSCC 328
           ITKRSG DPTP SCC
Sbjct: 501 ITKRSGRDPTPASCC 515

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|O62768|TRXR1_BOVIN Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3

 Score =  211 bits (536), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 123/326 (37%), Positives = 163/326 (50%), Gaps = 99/326 (30%)

Query: 3   IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
           IA     D+  E  Y+TVL+AIGR A T +  + N GVK+  +  KI  ++ EQTN+P +
Sbjct: 270 IAKSTDSDQTIEGEYNTVLLAIGRDACTRKIGLENVGVKINEKTGKIPVTEEEQTNVPYI 329

Query: 62  FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
           +A+GD+L  K ELTPVA+QAG+LLA RLYG  T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct: 330 YAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYENVPTTVFTPLEYGSCGLSEEK 389

Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
           A E +G +N+E+                                                
Sbjct: 390 AVEKFGEENVEV------------------------------------------------ 401

Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
             YH+Y+ P E+ IP R+  +CY K                                   
Sbjct: 402 --YHSYFWPLEWTIPSRDNNKCYAK----------------------------------- 424

Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
                        VVC     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GI
Sbjct: 425 -------------VVCNIKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKDQLDSTIGI 471

Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSC 327
           HP  AE FT +++TKRSG +     C
Sbjct: 472 HPVCAEVFTTLSVTKRSGGNILQTGC 497

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|O89049|TRXR1_RAT Thioredoxin reductase 1, cytoplasmic OS=Rattus norvegicus GN=Txnrd1 PE=1 SV=5

 Score =  210 bits (534), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 162/325 (49%), Gaps = 99/325 (30%)

Query: 4   ATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNVF 62
           A   + ++  ED ++TVL+A+GR + T    +   GVK+  +  KI  +D EQTN+P ++
Sbjct: 271 AKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIY 330

Query: 63  AVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
           A+GD+L  K ELTPVA+QAG+LLA RLYG  T + DY NV TTVFTPLEYGC GLSEEKA
Sbjct: 331 AIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEEKA 390

Query: 123 EELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKV 182
            E +G +N+E+                                                 
Sbjct: 391 VEKFGEENIEV------------------------------------------------- 401

Query: 183 IYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFF 242
            YH+++ P E+ +P R+  +CY K                                    
Sbjct: 402 -YHSFFWPLEWTVPSRDNNKCYAK------------------------------------ 424

Query: 243 IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIH 302
                       V+C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GIH
Sbjct: 425 ------------VICNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIH 472

Query: 303 PTLAEEFTRVTITKRSGEDPTPQSC 327
           P  AE FT +++TKRSG D     C
Sbjct: 473 PVCAEIFTTLSVTKRSGGDILQSGC 497

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9JLT4|TRXR2_MOUSE Thioredoxin reductase 2, mitochondrial OS=Mus musculus GN=Txnrd2 PE=1 SV=4

 Score =  208 bits (530), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 157/313 (50%), Gaps = 99/313 (31%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVLHEKPEL 74
           T+DTVL AIGR   T    +  AG+   P+N KI  D  E T++P+++A+GDV   +PEL
Sbjct: 308 TFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPEL 367

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY 134
           TP A++AGKLLA RL+G  +T MDY NV TTVFTPLEYGCVGLSEE+A  L+G +++E+ 
Sbjct: 368 TPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEV- 426

Query: 135 HAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFF 194
                                                            YHAYYKP EF 
Sbjct: 427 -------------------------------------------------YHAYYKPLEFT 437

Query: 195 IPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLK 254
           +  R+  +CY+K+                                               
Sbjct: 438 VADRDASQCYIKM----------------------------------------------- 450

Query: 255 VVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 314
            VC R  PQ VLG+HF+GPNAGEV QG+A  +KCG ++  +  TVGIHPT +EE  ++ I
Sbjct: 451 -VCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHI 509

Query: 315 TKRSGEDPTPQSC 327
           +KRSG +PT   C
Sbjct: 510 SKRSGLEPTVTGC 522

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9Z0J5|TRXR2_RAT Thioredoxin reductase 2, mitochondrial OS=Rattus norvegicus GN=Txnrd2 PE=1 SV=3

 Score =  208 bits (529), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 157/313 (50%), Gaps = 99/313 (31%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVLHEKPEL 74
           T+DTVL AIGR   T    +  AGV   P+N KI  D  E T++P+++A+GDV   +PEL
Sbjct: 310 TFDTVLWAIGRVPETRNLNLEKAGVNTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPEL 369

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY 134
           TP A++AGKLLA RL+G  +T M+Y NV TTVFTPLEYGCVGLSEE+A  L+G +++E+ 
Sbjct: 370 TPTAIKAGKLLAQRLFGKSSTLMNYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHIEV- 428

Query: 135 HAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFF 194
                                                            YHAYYKP EF 
Sbjct: 429 -------------------------------------------------YHAYYKPLEFT 439

Query: 195 IPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLK 254
           +  R+  +CY+K+                                               
Sbjct: 440 VADRDASQCYIKM----------------------------------------------- 452

Query: 255 VVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 314
            VC R  PQ VLG+HF+GPNAGEV QG+A  ++CG ++  +  TVGIHPT +EE  ++ I
Sbjct: 453 -VCMREPPQLVLGLHFLGPNAGEVTQGFALGIQCGASYAQVMQTVGIHPTCSEEVVKLHI 511

Query: 315 TKRSGEDPTPQSC 327
           +KRSG DPT   C
Sbjct: 512 SKRSGLDPTVTGC 524

Maintains mitochondrial thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q5NVA2|TRXR1_PONAB Thioredoxin reductase 1, cytoplasmic OS=Pongo abelii GN=TXNRD1 PE=2 SV=3

 Score =  208 bits (529), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 163/326 (50%), Gaps = 99/326 (30%)

Query: 3   IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
           +A   + +++ E  Y+TVL+AIGR A T +  +   GVK+  +  KI  +D EQTN+P +
Sbjct: 270 VAQSTNSEEIIEGEYNTVLLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYI 329

Query: 62  FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
           +A+GD+L +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct: 330 YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 389

Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
           A E +G +N+E+                                                
Sbjct: 390 AVEKFGEENIEV------------------------------------------------ 401

Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
             YH+Y+ P E+ IP R+  +CY KI                                  
Sbjct: 402 --YHSYFWPLEWTIPSRDNNKCYAKI---------------------------------- 425

Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
                         +C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GI
Sbjct: 426 --------------ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGI 471

Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSC 327
           HP  AE FT +++TKRSG       C
Sbjct: 472 HPVCAEVFTTLSVTKRSGASILQAGC 497

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9MYY8|TRXR1_PIG Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3

 Score =  207 bits (527), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 163/326 (50%), Gaps = 99/326 (30%)

Query: 3   IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
           +A   + +++ E  Y+TV++AIGR A T +  +   GVK+  +  KI  +D EQTN+P +
Sbjct: 270 VAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYI 329

Query: 62  FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
           +A+GD+L +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct: 330 YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 389

Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
           A E +G +N+E+                                                
Sbjct: 390 AVEKFGEENIEV------------------------------------------------ 401

Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
             YH+Y+ P E+ IP R+  +CY KI                                  
Sbjct: 402 --YHSYFWPLEWTIPSRDNNKCYAKI---------------------------------- 425

Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
                         +C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GI
Sbjct: 426 --------------ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGI 471

Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSC 327
           HP  AE FT +++TKRSG       C
Sbjct: 472 HPVCAEVFTTLSVTKRSGASILQAGC 497

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q16881|TRXR1_HUMAN Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3

 Score =  207 bits (526), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 163/326 (50%), Gaps = 99/326 (30%)

Query: 3   IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
           +A   + +++ E  Y+TV++AIGR A T +  +   GVK+  +  KI  +D EQTN+P +
Sbjct: 420 VAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYI 479

Query: 62  FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
           +A+GD+L +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct: 480 YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 539

Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
           A E +G +N+E+                                                
Sbjct: 540 AVEKFGEENIEV------------------------------------------------ 551

Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
             YH+Y+ P E+ IP R+  +CY KI                                  
Sbjct: 552 --YHSYFWPLEWTIPSRDNNKCYAKI---------------------------------- 575

Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
                         +C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GI
Sbjct: 576 --------------ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGI 621

Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSC 327
           HP  AE FT +++TKRSG       C
Sbjct: 622 HPVCAEVFTTLSVTKRSGASILQAGC 647

Isoform 1 may possess glutaredoxin activity as well as thioredoxin reductase activity and induces actin and tubulin polymerization, leading to formation of cell membrane protrusions. Isoform 4 enhances the transcriptional activity of estrogen receptors alpha and beta while isoform 5 enhances the transcriptional activity of the beta receptor only. Isoform 5 also mediates cell death induced by a combination of interferon-beta and retinoic acid.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9N2I8|TRXR2_BOVIN Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/319 (37%), Positives = 156/319 (48%), Gaps = 99/319 (31%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVL 68
           D+    T+DTVL AIGR   T    +  AGV   P   KI  D  E T++P+++A+GDV 
Sbjct: 289 DRKDAGTFDTVLWAIGRVPETASLNLEKAGVHTNPVTGKILVDAQETTSVPHIYAIGDVA 348

Query: 69  HEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
             +PELTP A+ AG+LLA RL G  +  MDY +V TTVFTPLEYGCVGLSEE A   +G 
Sbjct: 349 EGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSVPTTVFTPLEYGCVGLSEEAAVARHGE 408

Query: 129 DNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYY 188
           +++E+                                                  YHA+Y
Sbjct: 409 EHVEV--------------------------------------------------YHAFY 418

Query: 189 KPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP 248
           KP EF +PQR+  +CY+K+                                         
Sbjct: 419 KPLEFTVPQRDASQCYIKM----------------------------------------- 437

Query: 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEE 308
                  VC R  PQ VLG+HF+GPNAGEVIQG+A  +KCG +++ L  TVGIHPT AEE
Sbjct: 438 -------VCLREPPQLVLGLHFLGPNAGEVIQGFALGIKCGASYQQLMRTVGIHPTCAEE 490

Query: 309 FTRVTITKRSGEDPTPQSC 327
             ++ I+KRSG DPT   C
Sbjct: 491 VAKLRISKRSGLDPTVTGC 509

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
322785872	545	hypothetical protein SINV_11881 [Solenop	0.659	0.401	0.507	3e-79
345486120	494	PREDICTED: thioredoxin reductase 2, mito	0.662	0.445	0.5	7e-78
345486118	492	PREDICTED: thioredoxin reductase 2, mito	0.662	0.447	0.5	8e-78
332030506	840	Thioredoxin reductase 1, mitochondrial [	0.662	0.261	0.481	2e-77
383854008	514	PREDICTED: thioredoxin reductase 1, mito	0.662	0.428	0.490	1e-76
295842222	537	thioredoxin reductase 1 isoform 1 [Apis	0.653	0.404	0.492	3e-76
296937023	494	thioredoxin reductase 1 [Apis cerana cer	0.653	0.439	0.492	5e-76
33089108	485	thioredoxin reductase [Apis mellifera li	0.653	0.447	0.492	6e-76
307178379	537	Thioredoxin reductase 1, mitochondrial [	0.662	0.409	0.481	6e-76
295842224	494	thioredoxin reductase 1 isoform 2 [Apis	0.653	0.439	0.492	6e-76

>gi|322785872|gb|EFZ12491.1| hypothetical protein SINV_11881 [Solenopsis invicta]

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/317 (50%), Positives = 187/317 (58%), Gaps = 98/317 (30%)

Query: 12  VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEK 71
           V +D YDTVL AIGRR+LT+E    NAG+K++PE  KID+ NEQTN+PN++AVGDVLH+K
Sbjct: 326 VHQDVYDTVLFAIGRRSLTQELKPENAGLKLVPETGKIDAVNEQTNVPNIYAVGDVLHKK 385

Query: 72  PELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNL 131
           PELTPVA+ AGKLLA RL+GN T +MDY NVATTVFTPLEYGCVGLSEE A EL+G D +
Sbjct: 386 PELTPVAIHAGKLLAKRLFGNSTDKMDYTNVATTVFTPLEYGCVGLSEEAAVELHGEDQI 445

Query: 132 EIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPT 191
           E                                                  I+HAYYKPT
Sbjct: 446 E--------------------------------------------------IFHAYYKPT 455

Query: 192 EFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC 251
           EFF+PQ+N  RCY+K                                             
Sbjct: 456 EFFVPQKNVDRCYVK--------------------------------------------- 470

Query: 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR 311
              VV  R   +KVLGMHFIGPNAGEVIQG+AAA+KCGLT   L+STVGIHPT+AEEFTR
Sbjct: 471 ---VVALRHHDEKVLGMHFIGPNAGEVIQGFAAAIKCGLTIPLLKSTVGIHPTVAEEFTR 527

Query: 312 VTITKRSGEDPTPQSCC 328
           + ITKRSG DP PQSCC
Sbjct: 528 IFITKRSGMDPKPQSCC 544

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486120|ref|XP_003425406.1| PREDICTED: thioredoxin reductase 2, mitochondrial-like isoform 2 [Nasonia vitripennis]

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 159/318 (50%), Positives = 188/318 (59%), Gaps = 98/318 (30%)

Query: 11  KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
           ++ +D YDTVL AIGR+ALT++  + NAGV V+PEN KID+ NEQTN+P+V+AVGDVLH+
Sbjct: 274 QIHKDVYDTVLFAIGRKALTKDLKLENAGVFVVPENEKIDALNEQTNVPHVYAVGDVLHK 333

Query: 71  KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
           KPELTPVA+ AGKLLA RLYGN T  MDY NVATTVF+PLEYGCVGLSEE+A  ++G D+
Sbjct: 334 KPELTPVAIHAGKLLAKRLYGNATELMDYTNVATTVFSPLEYGCVGLSEEQAIAIHGEDS 393

Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
           +E                                                  IYHAYYKP
Sbjct: 394 IE--------------------------------------------------IYHAYYKP 403

Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
           TEFF+PQ++  RCYLK                                            
Sbjct: 404 TEFFVPQKDNSRCYLK-------------------------------------------- 419

Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
               VV  R   QKVLG+HF+GPNAGEVIQG+A A+KC LTF  L+STVGIHPT+AEEFT
Sbjct: 420 ----VVALRNNDQKVLGLHFVGPNAGEVIQGFATAIKCNLTFPLLKSTVGIHPTIAEEFT 475

Query: 311 RVTITKRSGEDPTPQSCC 328
           RV ITKRSG DP PQSCC
Sbjct: 476 RVNITKRSGMDPKPQSCC 493

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486118|ref|XP_001603220.2| PREDICTED: thioredoxin reductase 2, mitochondrial-like isoform 1 [Nasonia vitripennis]

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 159/318 (50%), Positives = 188/318 (59%), Gaps = 98/318 (30%)

Query: 11  KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
           ++ +D YDTVL AIGR+ALT++  + NAGV V+PEN KID+ NEQTN+P+V+AVGDVLH+
Sbjct: 272 QIHKDVYDTVLFAIGRKALTKDLKLENAGVFVVPENEKIDALNEQTNVPHVYAVGDVLHK 331

Query: 71  KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
           KPELTPVA+ AGKLLA RLYGN T  MDY NVATTVF+PLEYGCVGLSEE+A  ++G D+
Sbjct: 332 KPELTPVAIHAGKLLAKRLYGNATELMDYTNVATTVFSPLEYGCVGLSEEQAIAIHGEDS 391

Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
           +E                                                  IYHAYYKP
Sbjct: 392 IE--------------------------------------------------IYHAYYKP 401

Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
           TEFF+PQ++  RCYLK                                            
Sbjct: 402 TEFFVPQKDNSRCYLK-------------------------------------------- 417

Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
               VV  R   QKVLG+HF+GPNAGEVIQG+A A+KC LTF  L+STVGIHPT+AEEFT
Sbjct: 418 ----VVALRNNDQKVLGLHFVGPNAGEVIQGFATAIKCNLTFPLLKSTVGIHPTIAEEFT 473

Query: 311 RVTITKRSGEDPTPQSCC 328
           RV ITKRSG DP PQSCC
Sbjct: 474 RVNITKRSGMDPKPQSCC 491

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030506|gb|EGI70194.1| Thioredoxin reductase 1, mitochondrial [Acromyrmex echinatior]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/318 (48%), Positives = 184/318 (57%), Gaps = 98/318 (30%)

Query: 11  KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
           ++ +D YDT+L AIGRR+LT+E    NAG+K++PE  KID+ NEQTN+PN++AVGDVLH+
Sbjct: 620 QIHQDVYDTILFAIGRRSLTQELKPENAGLKLVPETGKIDAVNEQTNVPNIYAVGDVLHK 679

Query: 71  KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
           KPELTPVA+ AGKLLA RLYGN   +MDY NVATTVFTPLEYGCVGLSEE A  L+G   
Sbjct: 680 KPELTPVAIHAGKLLARRLYGNSIEKMDYTNVATTVFTPLEYGCVGLSEEAAIALHGEQE 739

Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
           +E                                                  I+HAYYKP
Sbjct: 740 IE--------------------------------------------------IFHAYYKP 749

Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
           TEFF+PQ+N  RCY+K                                            
Sbjct: 750 TEFFVPQKNVDRCYVK-------------------------------------------- 765

Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
               V+  R   ++VLGMHF+GPNAGEVIQG+A A+KCGLT   L+STVGIHPT+AEEFT
Sbjct: 766 ----VIALRHGDERVLGMHFVGPNAGEVIQGFAVAIKCGLTMPKLKSTVGIHPTVAEEFT 821

Query: 311 RVTITKRSGEDPTPQSCC 328
           R+ ITKRSG DP PQSCC
Sbjct: 822 RINITKRSGLDPKPQSCC 839

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854008|ref|XP_003702514.1| PREDICTED: thioredoxin reductase 1, mitochondrial-like [Megachile rotundata]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/318 (49%), Positives = 185/318 (58%), Gaps = 98/318 (30%)

Query: 11  KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
           K+ +DTYDTVL AIGR+ LTEE    N G+K++P+  KID+ +EQTN+PN++AVGDVLH+
Sbjct: 294 KIHQDTYDTVLFAIGRKPLTEELKPENVGLKLVPDTYKIDAIDEQTNVPNIYAVGDVLHK 353

Query: 71  KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
           KPELTPVA+ AG+LLA RL+GN T QMDY NVATTVF+PLEYGCVGLSEE A  ++G D 
Sbjct: 354 KPELTPVAIHAGRLLARRLFGNSTEQMDYTNVATTVFSPLEYGCVGLSEEAAIAIHGEDK 413

Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
           +E                                                  I+HAYYKP
Sbjct: 414 IE--------------------------------------------------IFHAYYKP 423

Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
           TEFFIPQ++   CYLK                                            
Sbjct: 424 TEFFIPQKDVSHCYLK-------------------------------------------- 439

Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
               VV  R   QKVLGMHFIGPNAGE+IQG+AAAVKC LTF  L+ TVGIHPT+AEEFT
Sbjct: 440 ----VVALRGGDQKVLGMHFIGPNAGEIIQGFAAAVKCNLTFPKLKETVGIHPTVAEEFT 495

Query: 311 RVTITKRSGEDPTPQSCC 328
           R++ITKRSG DP PQSCC
Sbjct: 496 RISITKRSGLDPKPQSCC 513

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295842222|ref|NP_001171496.1| thioredoxin reductase 1 isoform 1 [Apis mellifera]

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 155/315 (49%), Positives = 184/315 (58%), Gaps = 98/315 (31%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           +DT+DTVL AIGR+ LTEE    N G+K++PE AKID+ +EQTN+PNV+AVGDVLH+KPE
Sbjct: 320 QDTFDTVLFAIGRKPLTEELKPENIGLKLVPETAKIDAIDEQTNVPNVYAVGDVLHKKPE 379

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVA+ AG+LLA RL+GN T QMDY NVATTVF+PLEYGCVGLSEE A  ++G D +E 
Sbjct: 380 LTPVAIHAGRLLARRLFGNSTEQMDYVNVATTVFSPLEYGCVGLSEEAAIAIHGNDKIE- 438

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
                                                            IYHAYYKPTEF
Sbjct: 439 -------------------------------------------------IYHAYYKPTEF 449

Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
           FIPQ++   CYLK                                               
Sbjct: 450 FIPQKDVSNCYLK----------------------------------------------- 462

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313
            V+  R   Q+VLGMHFIGPNAGEVIQG+AAA+KC LTF  L+ TVGIHPT+AEEFTR++
Sbjct: 463 -VIAFRNGDQRVLGMHFIGPNAGEVIQGFAAAIKCNLTFPKLKDTVGIHPTVAEEFTRIS 521

Query: 314 ITKRSGEDPTPQSCC 328
           +TKRSG DP PQSCC
Sbjct: 522 VTKRSGLDPKPQSCC 536

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296937023|gb|ADH94550.1| thioredoxin reductase 1 [Apis cerana cerana] gi|296937025|gb|ADH94551.1| thioredoxin reductase 1 [Apis cerana cerana]

 Score =  290 bits (743), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 155/315 (49%), Positives = 184/315 (58%), Gaps = 98/315 (31%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           +DT+DTVL AIGR+ LTEE    N G+K++PE AKID+ +EQTN+PNV+AVGDVLH+KPE
Sbjct: 277 QDTFDTVLFAIGRKPLTEELKPENIGLKLVPETAKIDAIDEQTNVPNVYAVGDVLHKKPE 336

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVA+ AG+LLA RL+GN T QMDY NVATTVF+PLEYGCVGLSEE A  ++G D +E 
Sbjct: 337 LTPVAIHAGRLLARRLFGNSTEQMDYVNVATTVFSPLEYGCVGLSEEAAIAIHGDDKIE- 395

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
                                                            IYHAYYKPTEF
Sbjct: 396 -------------------------------------------------IYHAYYKPTEF 406

Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
           FIPQ++   CYLK                                               
Sbjct: 407 FIPQKDVSNCYLK----------------------------------------------- 419

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313
            V+  R   Q+VLGMHFIGPNAGEVIQG+AAA+KC LTF  L+ TVGIHPT+AEEFTR++
Sbjct: 420 -VIAFRNGDQRVLGMHFIGPNAGEVIQGFAAAIKCNLTFPKLKDTVGIHPTVAEEFTRIS 478

Query: 314 ITKRSGEDPTPQSCC 328
           +TKRSG DP PQSCC
Sbjct: 479 VTKRSGLDPKPQSCC 493

Source: Apis cerana cerana

Species: Apis cerana

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33089108|gb|AAP93583.1| thioredoxin reductase [Apis mellifera ligustica]

 Score =  290 bits (742), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/315 (49%), Positives = 184/315 (58%), Gaps = 98/315 (31%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           +DT+DTVL AIGR+ LTEE    N G+K++PE AKID+ +EQTN+PNV+AVGDVLH+KPE
Sbjct: 268 QDTFDTVLFAIGRKPLTEELKPENIGLKLVPETAKIDAIDEQTNVPNVYAVGDVLHKKPE 327

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVA+ AG+LLA RL+GN T QMDY NVATTVF+PLEYGCVGLSEE A  ++G D +E 
Sbjct: 328 LTPVAIHAGRLLARRLFGNSTEQMDYVNVATTVFSPLEYGCVGLSEEAAIAIHGNDKIE- 386

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
                                                            IYHAYYKPTEF
Sbjct: 387 -------------------------------------------------IYHAYYKPTEF 397

Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
           FIPQ++   CYLK                                               
Sbjct: 398 FIPQKDVSNCYLK----------------------------------------------- 410

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313
            V+  R   Q+VLGMHFIGPNAGEVIQG+AAA+KC LTF  L+ TVGIHPT+AEEFTR++
Sbjct: 411 -VIAFRNGDQRVLGMHFIGPNAGEVIQGFAAAIKCNLTFPKLKDTVGIHPTVAEEFTRIS 469

Query: 314 ITKRSGEDPTPQSCC 328
           +TKRSG DP PQSCC
Sbjct: 470 VTKRSGLDPKPQSCC 484

Source: Apis mellifera ligustica

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178379|gb|EFN67124.1| Thioredoxin reductase 1, mitochondrial [Camponotus floridanus]

 Score =  290 bits (742), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 153/318 (48%), Positives = 188/318 (59%), Gaps = 98/318 (30%)

Query: 11  KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
           ++ +D YDTVL AIGRRALTEE    NAG+K++PE  KI++ NEQTN+PN++AVGDVLH+
Sbjct: 317 QIHQDVYDTVLFAIGRRALTEELKPENAGLKLVPETNKIEAINEQTNVPNIYAVGDVLHK 376

Query: 71  KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
           +PELTPVA+ AGKLLA RL+ N T QMDY NVATTVF+PLEYGCVGLSEE A  L+G + 
Sbjct: 377 RPELTPVAIHAGKLLARRLFDNSTEQMDYTNVATTVFSPLEYGCVGLSEEAAIGLHGEEE 436

Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
           +E                                                  IYHAYYKP
Sbjct: 437 IE--------------------------------------------------IYHAYYKP 446

Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
           TEFF+PQ++  RCY+K                                            
Sbjct: 447 TEFFVPQKDVDRCYVK-------------------------------------------- 462

Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
               VV  R+  Q+VLG+HF+GPNAGEVIQG+AAA+KCGLT   L++TVGIHPT+AEEFT
Sbjct: 463 ----VVAFRSGDQRVLGIHFVGPNAGEVIQGFAAAIKCGLTIPKLKATVGIHPTVAEEFT 518

Query: 311 RVTITKRSGEDPTPQSCC 328
           R+++TKRSG DP PQSCC
Sbjct: 519 RISVTKRSGLDPKPQSCC 536

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|295842224|ref|NP_001171497.1| thioredoxin reductase 1 isoform 2 [Apis mellifera]

 Score =  290 bits (742), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 155/315 (49%), Positives = 184/315 (58%), Gaps = 98/315 (31%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           +DT+DTVL AIGR+ LTEE    N G+K++PE AKID+ +EQTN+PNV+AVGDVLH+KPE
Sbjct: 277 QDTFDTVLFAIGRKPLTEELKPENIGLKLVPETAKIDAIDEQTNVPNVYAVGDVLHKKPE 336

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVA+ AG+LLA RL+GN T QMDY NVATTVF+PLEYGCVGLSEE A  ++G D +E 
Sbjct: 337 LTPVAIHAGRLLARRLFGNSTEQMDYVNVATTVFSPLEYGCVGLSEEAAIAIHGNDKIE- 395

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
                                                            IYHAYYKPTEF
Sbjct: 396 -------------------------------------------------IYHAYYKPTEF 406

Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
           FIPQ++   CYLK                                               
Sbjct: 407 FIPQKDVSNCYLK----------------------------------------------- 419

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313
            V+  R   Q+VLGMHFIGPNAGEVIQG+AAA+KC LTF  L+ TVGIHPT+AEEFTR++
Sbjct: 420 -VIAFRNGDQRVLGMHFIGPNAGEVIQGFAAAIKCNLTFPKLKDTVGIHPTVAEEFTRIS 478

Query: 314 ITKRSGEDPTPQSCC 328
           +TKRSG DP PQSCC
Sbjct: 479 VTKRSGLDPKPQSCC 493

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
UNIPROTKB|D4A9D1	493	Txnrd2 "Thioredoxin reductase	0.301	0.202	0.54	2.7e-51
UNIPROTKB|F1MN10	506	F1MN10 "Uncharacterized protei	0.379	0.249	0.511	7.3e-51
UNIPROTKB|H0YBI6	644	TXNRD3 "Thioredoxin reductase	0.298	0.153	0.505	1.7e-46
FB|FBgn0020653	596	Trxr-1 "Thioredoxin reductase-	0.433	0.241	0.606	3.4e-45
UNIPROTKB|F1SG38	499	TXNRD1 "Thioredoxin reductase	0.475	0.316	0.531	1.9e-42
FB|FBgn0037170	516	Trxr-2 "thioredoxin reductase	0.454	0.292	0.551	3.2e-42
UNIPROTKB|G1K1Q2	497	TXNRD1 "Thioredoxin reductase	0.469	0.313	0.528	8.4e-42
UNIPROTKB|O62768	499	TXNRD1 "Thioredoxin reductase	0.469	0.312	0.528	8.4e-42
UNIPROTKB|E9PMY9	461	TXNRD1 "Thioredoxin reductase	0.469	0.338	0.509	1.4e-41
UNIPROTKB|E9PNQ6	568	TXNRD1 "Thioredoxin reductase	0.469	0.274	0.509	1.4e-41

UNIPROTKB|D4A9D1 Txnrd2 "Thioredoxin reductase 2, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 317 (116.6 bits), Expect = 2.7e-51, Sum P(2) = 2.7e-51
 Identities = 54/100 (54%), Positives = 72/100 (72%)

Query:   228 YLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVK 287
             Y  +YHAYYKP EF +  R+  +CY+K+VC R  PQ VLG+HF+GPNAGEV QG+A  ++
Sbjct:   394 YSNVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIQ 453

Query:   288 CGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSC 327
             CG ++  +  TVGIHPT +EE  ++ I+KRSG DPT   C
Sbjct:   454 CGASYAQVMQTVGIHPTCSEEVVKLHISKRSGLDPTVTGC 493

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

UNIPROTKB|F1MN10 F1MN10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 313 (115.2 bits), Expect = 7.3e-51, Sum P(2) = 7.3e-51
 Identities = 65/127 (51%), Positives = 84/127 (66%)

Query:    10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVL 68
             D+    T+DTVL AIGR   T    +  AGV   P   KI  D  E T++P+++A+GDV 
Sbjct:   288 DRKDAGTFDTVLWAIGRVPETASLNLEKAGVHTNPVTGKILVDAQETTSVPHIYAIGDVA 347

Query:    69 HEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
               +PELTP A+ AG+LLA RL G  +  MDY +V TTVFTPLEYGCVGLSEE A   +G 
Sbjct:   348 EGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSVPTTVFTPLEYGCVGLSEEAAVARHGE 407

Query:   129 DNLEIYH 135
             +++EI+H
Sbjct:   408 EHVEIHH 414

GO:0030097 "hemopoiesis" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|H0YBI6 TXNRD3 "Thioredoxin reductase 3" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
 Identities = 50/99 (50%), Positives = 66/99 (66%)

Query:   230 KIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCG 289
             KIYH  + P E+ +  R    CY K++C +    +V+G H +GPNAGEV QG+AAA+KCG
Sbjct:   545 KIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCG 604

Query:   290 LTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC 328
             LT + L+ T+GIHPT  E FT + ITK SG D T + CC
Sbjct:   605 LTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCC 643

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

FB|FBgn0020653 Trxr-1 "Thioredoxin reductase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 88/145 (60%), Positives = 113/145 (77%)

Query:    14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
             ED YDTVL AIGR+ L ++  + NAGV V  +   +DS  E TN+ N++AVGD+++ KPE
Sbjct:   380 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQ-EATNVANIYAVGDIIYGKPE 438

Query:    74 LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
             LTPVAV AG+LLA RLYG  T +MDY++VATTVFTPLEY CVGLSEE A + +GAD +E+
Sbjct:   439 LTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEV 498

Query:   134 YHAYYKPTEFFIPQRNPQRCYLKFI 158
             +H YYKPTEFFIPQ++ + CYLK +
Sbjct:   499 FHGYYKPTEFFIPQKSVRYCYLKAV 523

GO:0001666 "response to hypoxia" evidence=IMP

GO:0004362 "glutathione-disulfide reductase activity" evidence=IDA;NAS;IMP

GO:0008340 "determination of adult lifespan" evidence=IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA;IC

GO:0005739 "mitochondrion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=NAS;IDA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1SG38 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Sus scrofa (taxid:9823)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 85/160 (53%), Positives = 113/160 (70%)

Query:     1 MRI-ATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNI 58
             +R+ A   + D+  E  Y+TVL+AIGR A T    +   GV++  +  KI  +D EQTN+
Sbjct:   269 LRVTAKATNSDETIEGEYNTVLLAIGRDACTRNIGLETVGVEINEKTGKIPVTDEEQTNV 328

Query:    59 PNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLS 118
             P V+A+GD+L  KPELTPVA+QAG+LLA RLYG  T + DY+NV TTVFTPLEYG  GLS
Sbjct:   329 PYVYAIGDILEGKPELTPVAIQAGRLLAQRLYGGSTVKCDYENVPTTVFTPLEYGACGLS 388

Query:   119 EEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
             EEKA E +G +N+EIYH+Y+ P E+ IP R+  +CY K +
Sbjct:   389 EEKAVEKFGEENIEIYHSYFWPLEWTIPSRDNNKCYAKIV 428

GO:0008283 "cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0001707 "mesoderm formation" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

FB|FBgn0037170 Trxr-2 "thioredoxin reductase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 85/154 (55%), Positives = 113/154 (73%)

Query:     5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
             T   MD    D +DTVL AIGR+ L E+  +  AGVK   +   +D+  E T++P++FAV
Sbjct:   293 TTTQMDG--SDVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAA-EATSVPHIFAV 349

Query:    65 GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
             GD+++ +PELTPVA+ +G+LLA RL+   T  MDY +VATTVFTPLEY CVG+SEE A E
Sbjct:   350 GDIIYGRPELTPVAILSGRLLARRLFAGSTQLMDYADVATTVFTPLEYSCVGMSEETAIE 409

Query:   125 LYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
             L GADN+E++H YYKPTEFFIPQ++ + CYLK +
Sbjct:   410 LRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAV 443

GO:0016209 "antioxidant activity" evidence=ISS;NAS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS;IDA

GO:0045454 "cell redox homeostasis" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|G1K1Q2 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 83/157 (52%), Positives = 111/157 (70%)

Query:     3 IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
             IA     D+  E  Y+TVL+AIGR A T +  + N GVK+  +  KI  ++ EQTN+P +
Sbjct:   270 IAKSTDSDQTIEGEYNTVLLAIGRDACTRKIGLENVGVKINEKTGKIPVTEEEQTNVPYI 329

Query:    62 FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
             +A+GD+L  K ELTPVA+QAG+LLA RLYG  T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct:   330 YAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYENVPTTVFTPLEYGSCGLSEEK 389

Query:   122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
             A E +G +N+E+YH+Y+ P E+ IP R+  +CY K +
Sbjct:   390 AVEKFGEENVEVYHSYFWPLEWTIPSRDNNKCYAKVV 426

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|O62768 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 83/157 (52%), Positives = 111/157 (70%)

Query:     3 IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
             IA     D+  E  Y+TVL+AIGR A T +  + N GVK+  +  KI  ++ EQTN+P +
Sbjct:   270 IAKSTDSDQTIEGEYNTVLLAIGRDACTRKIGLENVGVKINEKTGKIPVTEEEQTNVPYI 329

Query:    62 FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
             +A+GD+L  K ELTPVA+QAG+LLA RLYG  T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct:   330 YAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYENVPTTVFTPLEYGSCGLSEEK 389

Query:   122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
             A E +G +N+E+YH+Y+ P E+ IP R+  +CY K +
Sbjct:   390 AVEKFGEENVEVYHSYFWPLEWTIPSRDNNKCYAKVV 426

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|E9PMY9 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 80/157 (50%), Positives = 112/157 (71%)

Query:     3 IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
             +A   + +++ E  Y+TV++AIGR A T +  +   GVK+  +  KI  +D EQTN+P +
Sbjct:   232 VAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYI 291

Query:    62 FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
             +A+GD+L +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct:   292 YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 351

Query:   122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
             A E +G +N+E+YH+Y+ P E+ IP R+  +CY K I
Sbjct:   352 AVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKII 388

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

UNIPROTKB|E9PNQ6 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 80/157 (50%), Positives = 112/157 (71%)

Query:     3 IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
             +A   + +++ E  Y+TV++AIGR A T +  +   GVK+  +  KI  +D EQTN+P +
Sbjct:   339 VAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYI 398

Query:    62 FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
             +A+GD+L +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct:   399 YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 458

Query:   122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
             A E +G +N+E+YH+Y+ P E+ IP R+  +CY K I
Sbjct:   459 AVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKII 495

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	332
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	2e-80
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	4e-36
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	2e-34
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	2e-26
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	1e-25
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-21
pfam02852	110	pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu	5e-21
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	2e-18
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	2e-18
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	7e-18
PLN02546	558	PLN02546, PLN02546, glutathione reductase	8e-18
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	1e-17
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	7e-17
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	7e-16
PLN02546	558	PLN02546, PLN02546, glutathione reductase	1e-15
PLN02507	499	PLN02507, PLN02507, glutathione reductase	2e-15
PLN02507	499	PLN02507, PLN02507, glutathione reductase	2e-14
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	3e-14
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	1e-13
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	4e-13
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	8e-13
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	3e-12
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	6e-12
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	8e-12
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	3e-11
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	7e-11
TIGR02053	463	TIGR02053, MerA, mercuric reductase	9e-11
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	4e-10
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-09
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	5e-09
pfam02852	110	pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu	6e-09
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-08
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	3e-08
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	3e-08
TIGR02053	463	TIGR02053, MerA, mercuric reductase	4e-08
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	7e-08
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	1e-07
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	3e-07
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	6e-07
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	1e-06
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	1e-06
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	2e-06
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	3e-06
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	3e-06
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	4e-06
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	9e-06
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	1e-05
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	2e-05
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	6e-05
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	7e-05
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	1e-04
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	2e-04
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	7e-04
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	0.002
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	0.002
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.004

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score =  252 bits (645), Expect = 2e-80
 Identities = 122/327 (37%), Positives = 165/327 (50%), Gaps = 98/327 (29%)

Query: 3   IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNV 61
           +          E+ YDTVL+AIGR A T +  + N GVK+  +  KI +D  EQTN+P +
Sbjct: 254 LVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYI 313

Query: 62  FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
           +AVGD+L +KPELTPVA+QAG+LLA RL+   T   DY+NV TTVFTPLEYG  GLSEEK
Sbjct: 314 YAVGDILEDKPELTPVAIQAGRLLAQRLFKGSTVICDYENVPTTVFTPLEYGACGLSEEK 373

Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
           A E +G +N+E++H+Y+                                           
Sbjct: 374 AVEKFGEENVEVFHSYF------------------------------------------- 390

Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
                   P E+ IP R                                           
Sbjct: 391 -------WPLEWTIPSR------------------------------------------- 400

Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
                N  +CY K+VC +   ++V+G H +GPNAGEV QG+AAA++CGLT + L++T+GI
Sbjct: 401 ----DNHNKCYAKLVCNKKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGI 456

Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSCC 328
           HP  AE FT +++TKRSG+D   Q CC
Sbjct: 457 HPVCAEVFTTLSVTKRSGQDILQQGCC 483

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score =  136 bits (343), Expect = 4e-36
 Identities = 57/118 (48%), Positives = 78/118 (66%), Gaps = 1/118 (0%)

Query: 17  YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTP 76
           +DTVL A GR+   +   ++  GV V  ++ KI + N+ TNIPN+FAVGDV+  +PELTP
Sbjct: 267 FDTVLYATGRKPDIKGLNLNAIGVHV-NKSNKIIAPNDCTNIPNIFAVGDVVEGRPELTP 325

Query: 77  VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY 134
           VA++AG LLA RL+      +DY  + TT+FTP+EYG  G S E A   YG D++E Y
Sbjct: 326 VAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEY 383

Length = 499

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score =  130 bits (330), Expect = 2e-34
 Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 5/148 (3%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVLHEKPEL 74
           T D ++ AIGR   T+   + NAGVK+  E   I  D  + TN+P ++AVGDV   + EL
Sbjct: 253 TVDCLIWAIGREPNTDGLGLENAGVKL-NEKGYIIVDEYQNTNVPGIYAVGDVTG-RVEL 310

Query: 75  TPVAVQAGKLLAARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           TPVA+ AG+ L+ RL+ N    ++DY N+ T VF+    G VGL+EE+A E YG DN+++
Sbjct: 311 TPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKV 370

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
           Y + + P    +     Q C +K +   
Sbjct: 371 YRSSFTPMYTALTGH-RQPCLMKLVVVG 397

Length = 450

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score =  108 bits (270), Expect = 2e-26
 Identities = 54/146 (36%), Positives = 91/146 (62%), Gaps = 5/146 (3%)

Query: 15  DTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHEKPE 73
           D  D ++ AIGR+  T+   + N G+K + E  +I  D  Q TN+P ++A+GDV+ +  E
Sbjct: 252 DDVDELIWAIGRKPNTKGLGLENVGIK-LNEKGQIIVDEYQNTNVPGIYALGDVVGKV-E 309

Query: 74  LTPVAVQAGKLLAARLYGNGTT-QMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
           LTPVA+ AG+ L+ RL+   T  ++DY NV T VF+    G +GL+E++A E YG +N++
Sbjct: 310 LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIK 369

Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFI 158
           +Y++ + P  ++      Q+C +K +
Sbjct: 370 VYNSSFTPM-YYAMTSEKQKCRMKLV 394

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  106 bits (266), Expect = 1e-25
 Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 3/113 (2%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKPEL 74
             D VL+AIGR+  T+   + NAGV++      K+D D   TN+P ++A+GDV+   P L
Sbjct: 260 EADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVI-GGPML 317

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
             VA+  G++ A  + G   T +DY+ + + VFT  E   VGL+EE+A+E   
Sbjct: 318 AHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGI 370

Length = 454

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 93.7 bits (233), Expect = 2e-21
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D VL A GR   T    +  AGV++    A    +  +T+ P+++AVGDV  ++  LTPV
Sbjct: 254 DVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTSTPSIYAVGDVT-DRINLTPV 312

Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAY 137
           A+      A   +GN  T  D+  +AT VF+    G VGL+EE+A       ++E+Y A 
Sbjct: 313 AIHEATCFAETEFGNNPTSFDHDLIATAVFSQPPIGTVGLTEEEARR--KFGDIEVYRAE 370

Query: 138 YKPTEFFIPQRNPQRCYLKFI 158
           ++P +     R  ++  +K +
Sbjct: 371 FRPMKATFSGRQ-EKTLMKLV 390

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

 Score = 86.1 bits (214), Expect = 5e-21
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K+    +K     +      + ++K+V +     ++LG H +GPNAGE+IQ  A A+K 
Sbjct: 28  VKVGKFPFKANGRALAYGE-TKGFVKLVADAE-TGRILGAHIVGPNAGELIQEAALAIKM 85

Query: 289 GLTFETLESTVGIHPTLAEEFTR 311
           G T E L +T+  HPTL+E    
Sbjct: 86  GATVEDLANTIHAHPTLSEALVE 108

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 85.3 bits (211), Expect = 2e-18
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query: 248 PQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
              C  K+VC ++   KV+G HF+GPNAGE+ QG++ A+K G      +S +GIHPT AE
Sbjct: 413 SSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAE 472

Query: 308 EFTRVTITKRSGE 320
            F  +++T+RSGE
Sbjct: 473 VFMNLSVTRRSGE 485

Length = 499

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 85.6 bits (213), Expect = 2e-18
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K+Y + + P    +     Q C +K+V      +KV+G+H IG  A E+IQG+A A+K 
Sbjct: 368 VKVYRSSFTPMYTALTGH-RQPCLMKLVVV-GKEEKVVGLHGIGFGADEMIQGFAVAIKM 425

Query: 289 GLTFETLESTVGIHPTLAEEFTRVT 313
           G T    ++TV IHPT AEEF  VT
Sbjct: 426 GATKADFDNTVAIHPTAAEEF--VT 448

Length = 450

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 83.9 bits (207), Expect = 7e-18
 Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 37/181 (20%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKP- 72
            + +D V+  +GR   TE+  +    +K      K+D DN++T++ +++AVGD    K  
Sbjct: 322 YEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD-DNQRTSVKHIYAVGDCCMVKKN 380

Query: 73  --------------------------------ELTPVAVQAGKLLAARLYGNGTTQMDYQ 100
                                           +LTPVA+ AG+LLA RL+G  +   +Y+
Sbjct: 381 QEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYK 440

Query: 101 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNP---QRCYLKF 157
            + + +F+    G +GLSE++A ++YG +N++IY + +    F +   +P   ++ YLK 
Sbjct: 441 LIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL 500

Query: 158 I 158
           +
Sbjct: 501 V 501

Length = 561

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 83.8 bits (207), Expect = 8e-18
 Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 6/143 (4%)

Query: 20  VLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVA 78
           V+ A GR+  T+   +   GVK + +N  I+ D   +T++P+++AVGDV  ++  LTPVA
Sbjct: 342 VMFATGRKPNTKNLGLEEVGVK-MDKNGAIEVDEYSRTSVPSIWAVGDVT-DRINLTPVA 399

Query: 79  VQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYY 138
           +  G  LA  L+GN  T+ DY+ V + VF+    G VGL+EE+A E YG  +++++ A +
Sbjct: 400 LMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANF 457

Query: 139 KPTEFFIPQRNPQRCYLKFIYHA 161
           +P +  +    P R ++K I  A
Sbjct: 458 RPLKATLSGL-PDRVFMKLIVCA 479

Length = 558

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
           T + VL+A+GR+  TE   +   GV+ + E  +I  D   +TN+P ++A+GDV+   P L
Sbjct: 257 TGEKVLVAVGRKPNTEGLGLEKLGVE-LDERGRIVVDEYMRTNVPGIYAIGDVI-GGPML 314

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
             VA   G + A  + G     +DY  V + ++T  E   VGL+EE+A+E
Sbjct: 315 AHVASHEGIVAAENIAGKEPAHIDYDAVPSVIYTDPEVASVGLTEEQAKE 364

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 80.8 bits (199), Expect = 7e-17
 Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 9/136 (6%)

Query: 5   TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
           +G ++D       D V+MAIGR   T+   +   GV++  + A    +  +TN+PN++A+
Sbjct: 271 SGKTLD------VDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAI 324

Query: 65  GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           GDV  ++  LTPVA+  G      ++GN   + D+  VA+ VF+    G  GL EE A +
Sbjct: 325 GDVT-DRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAK 383

Query: 125 LYGADNLEIYHAYYKP 140
            +  + + +Y + + P
Sbjct: 384 KF--EKVAVYESSFTP 397

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 77.5 bits (191), Expect = 7e-16
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 231 IYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGL 290
           +Y A ++P +     R  ++  +K+V + A   KVLG H +GP+A E+IQG A A+K G 
Sbjct: 366 VYRAEFRPMKATFSGRQ-EKTLMKLVVD-AKDDKVLGAHMVGPDAAEIIQGLAIALKMGA 423

Query: 291 TFETLESTVGIHPTLAEEF 309
           T +  +STV +HPT AEE 
Sbjct: 424 TKDDFDSTVAVHPTSAEEL 442

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 77.2 bits (190), Expect = 1e-15
 Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 4/80 (5%)

Query: 248 PQRCYLKV-VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
           P R ++K+ VC  A   KVLG+H  G +A E+IQG+A AVK GLT    ++TVGIHPT A
Sbjct: 468 PDRVFMKLIVC--AKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAA 525

Query: 307 EEF-TRVTITKRSGEDPTPQ 325
           EEF T  T T++  +D   +
Sbjct: 526 EEFVTMRTPTRKIRKDSPSE 545

Length = 558

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 4/142 (2%)

Query: 8   SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD 66
             D   E   D VL A GR   T+   +   GV++    A K+D +  +TNIP+++A+GD
Sbjct: 280 ITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD-EYSRTNIPSIWAIGD 338

Query: 67  VLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELY 126
           V + +  LTPVA+  G   A  ++G   T+ DY+NVA  VF       VGLSEE+A E  
Sbjct: 339 VTN-RINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQA 397

Query: 127 GADNLEIYHAYYKPTEFFIPQR 148
             D L ++ + + P +  I  R
Sbjct: 398 KGDIL-VFTSSFNPMKNTISGR 418

Length = 499

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 7/94 (7%)

Query: 239 TEFFIPQRNP-----QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFE 293
           T  F P +N      ++  +K++ + A   KVLG    GP+A E++QG A A+KCG T  
Sbjct: 405 TSSFNPMKNTISGRQEKTVMKLIVD-AETDKVLGASMCGPDAPEIMQGIAVALKCGATKA 463

Query: 294 TLESTVGIHPTLAEEF-TRVTITKRSGEDPTPQS 326
             +STVGIHP+ AEEF T  ++T+R      P++
Sbjct: 464 QFDSTVGIHPSAAEEFVTMRSVTRRVTAKGKPKT 497

Length = 499

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 72.5 bits (179), Expect = 3e-14
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVK-----VIPENAKIDSDNEQTNIPNVFAV 64
            K      D VL+A GRR  T+   + N G++         +        QT++P ++A 
Sbjct: 250 GKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHT-----QTSVPGIYAA 304

Query: 65  GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           GDV   KP L   A   G++ A    G+    + Y  + + VFT  +   VGL+EE+ + 
Sbjct: 305 GDVNG-KPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKA 363

Query: 125 LYGA 128
               
Sbjct: 364 AGID 367

Length = 460

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 70.9 bits (175), Expect = 1e-13
 Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 13/126 (10%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKV----IPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           D VL+A+GRR  TE   +   GVK     I     +D +  +TN+PN++A+GD++   P 
Sbjct: 262 DYVLVAVGRRPNTENLGLEELGVKTDRGFIE----VD-EQLRTNVPNIYAIGDIV-GGPM 315

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           L   A   G + A  + GN    +DY+ +    +T  E   VGL+E KA+E     ++++
Sbjct: 316 LAHKASAEGIIAAEAIAGN-PHPIDYRGIPAVTYTHPEVASVGLTEAKAKE--EGFDVKV 372

Query: 134 YHAYYK 139
               + 
Sbjct: 373 VKFPFA 378

Length = 462

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKP 72
              YD VL+A+GR    +      AGV+V  E   I  D + +TN+P++FA+GD++ + P
Sbjct: 260 PQRYDAVLVAVGRVPNGKLLDAEKAGVEV-DERGFIRVDKQCRTNVPHIFAIGDIVGQ-P 317

Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
            L    V  G + A  + G      D + + +  +T  E   VGL+E++A+E
Sbjct: 318 MLAHKGVHEGHVAAEVIAGK-KHYFDPKVIPSIAYTEPEVAWVGLTEKEAKE 368

Length = 471

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 68.5 bits (167), Expect = 8e-13
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 229 LKIYHAYYKPTEFFIPQRNP---QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAA 285
           +KIY + +    F +   +P   ++ YLK+VC     + + G+H +G NA E++QG+A A
Sbjct: 471 VKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCV-GKEELIKGLHIVGLNADEILQGFAVA 529

Query: 286 VKCGLTFETLESTVGIHPTLAEEF 309
           +K   T    + T+ IHPT AEEF
Sbjct: 530 LKMNATKADFDETIPIHPTAAEEF 553

Length = 561

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 66.8 bits (164), Expect = 3e-12
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
                ++K+V ++    ++LG H +GP A E+I   A A++ G T E L  T+  HPTL+
Sbjct: 389 GETDGFVKLVVDKET-GRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLS 447

Query: 307 EEFT 310
           E   
Sbjct: 448 EALK 451

Length = 454

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAP-QKVLGMHFIGPNAGEVIQGYAAAVK 287
           +K+Y++ + P  ++      Q+C +K+VC  A   +KV+G+H IG    E++QG+A A+K
Sbjct: 368 IKVYNSSFTPM-YYAMTSEKQKCRMKLVC--AGKEEKVVGLHGIGDGVDEMLQGFAVAIK 424

Query: 288 CGLTFETLESTVGIHPTLAEEF 309
            G T    ++TV IHPT +EE 
Sbjct: 425 MGATKADFDNTVAIHPTSSEEL 446

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 65.3 bits (160), Expect = 8e-12
 Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
             D ++++IGR   T+   +   G+K+  E   I  D+  +TN+PNV+A+GDV+   P L
Sbjct: 272 EVDKLIVSIGRVPNTDGLGLEAVGLKL-DERGFIPVDDHCRTNVPNVYAIGDVV-RGPML 329

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
              A + G  +A R+ G     +DY  +   ++T  E   VG +E++ + 
Sbjct: 330 AHKAEEEGVAVAERIAGQ-KGHIDYNTIPWVIYTSPEIAWVGKTEQQLKA 378

Length = 475

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
             + E   + VL+++GR+   ++  +  AGV+   +   ++ ++ QTN+P+++A GDV+ 
Sbjct: 250 GSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVN-EHMQTNVPHIYACGDVIG 308

Query: 70  EKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
              +L  VA   G   A    G    +++Y  V   ++T  E   VGL+E++A E YG
Sbjct: 309 -GIQLAHVAFHEGTTAALHASGE-DVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYG 364

Length = 458

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELT 75
            +D +L A GR+  TE   + N  +++    A    D  QT++P VFAVGDV +  P+ T
Sbjct: 241 RFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDV-NGGPQFT 299

Query: 76  PVAVQAGKLLAARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
            +++   +++   L G+G+ T  D  NV TT+F       VGL+E++A+E
Sbjct: 300 YISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKE 349

Length = 438

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 62.1 bits (151), Expect = 9e-11
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPELTP 76
           D +L+A GRR  T+   +  AGVK + E   I  D   +T+ P ++A GDV     +L  
Sbjct: 256 DELLVATGRRPNTDGLGLEKAGVK-LDERGGILVDETLRTSNPGIYAAGDVT-GGLQLEY 313

Query: 77  VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           VA + G + A    G    ++D   +   VFT      VGL+E +A++
Sbjct: 314 VAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQK 361

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPELTP 76
           D VL+++GRR  TE   + N  + V  E   I  D+  QT   +++A+GDV+ E P+L  
Sbjct: 271 DKVLVSVGRRPNTEGIGLENTDIDV--EGGFIQIDDFCQTKERHIYAIGDVIGE-PQLAH 327

Query: 77  VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           VA+  G++ A  + G      DY  +    +T  E   VGL+EE+A+E
Sbjct: 328 VAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKE 375

Length = 472

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
            ++K++ ++    ++LG H IGP+A E+I   A A++   T E L  T+  HPTL+E
Sbjct: 390 GFVKIIADKKT-GEILGAHIIGPHATELISEAALAMELEGTVEELARTIHPHPTLSE 445

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 56.7 bits (138), Expect = 5e-09
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
             +L+A+GR   T++  +  AGV+          D  +T  P ++A GD  + +   T  
Sbjct: 261 SHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDC-NGRGAFTHT 319

Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           A    +++AA L   G  ++  + V    +T      VG++E +A +
Sbjct: 320 AYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARK 366

Length = 463

>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

 Score = 52.6 bits (127), Expect = 6e-09
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 102 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
           V + VFT  E   VGL+EE+A++  G   +++    +K     +      + ++K +  A
Sbjct: 1   VPSVVFTDPEIASVGLTEEEAKKKGG--EVKVGKFPFKANGRALAYGE-TKGFVKLVADA 57

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 17  YDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV 67
            D VL+AIGRR  TE   +  AGV++       +D +  +T++P ++A GDV
Sbjct: 230 ADVVLVAIGRRPNTEL--LEQAGVELDERGYIVVD-EYLRTSVPGIYAAGDV 278

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           + +L++ GR A T +  +   GV      A + +   +T+ P+++A GD   + P+   V
Sbjct: 273 EKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDC-SDLPQFVYV 331

Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAE 123
           A  AG      + G G   +D   +   +FT  +   VGLSE KA 
Sbjct: 332 AAAAGSRAGINMTG-GNATLDLSAMPAVIFTDPQVATVGLSEAKAH 376

Length = 479

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L+A GR   T   A+  AGV V  + A +     +T++P+++A GD   ++P+   V
Sbjct: 355 DKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCT-DQPQFVYV 413

Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
           A  AG   A  + G G   +D   +   VFT  +   VG SE +A
Sbjct: 414 AAAAGTRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEA 457

Length = 561

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 17/86 (19%)

Query: 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE-- 307
           R ++K+V E     KVLG+  + P A EVI   A A++ G+T + L  T+   PT+AE  
Sbjct: 386 RGFIKLVAEPGT-GKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGL 444

Query: 308 -----EFTRVTITKRSGEDPTPQSCC 328
                 F R         D +  SCC
Sbjct: 445 KLAAQTFYR---------DVSKLSCC 461

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHEKPELTP 76
           D +L+A GR    +    + AGV V  E+ ++  D  Q T+   VFA+GDV     +L  
Sbjct: 252 DVLLVATGRVPNGDLLDAAAAGVDVD-EDGRVVVDEYQRTSAEGVFALGDV-SSPYQLKH 309

Query: 77  VAVQAGKLLAARL-YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           VA    +++   L + +     D++ V   VFT  +   VGL+E +A  
Sbjct: 310 VANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARA 358

Length = 451

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 19/43 (44%), Positives = 24/43 (55%)

Query: 265 VLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           VLG H +G  A E+IQ    A+    T E L  T+  HPTL+E
Sbjct: 404 VLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSE 446

Length = 462

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 51.3 bits (124), Expect = 3e-07
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           +KV  ++    ++LG H IGP+A  +I   A A++ GLT E L      HPTL+E
Sbjct: 391 VKVYADKKT-GRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSE 444

Length = 460

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 15/137 (10%)

Query: 17  YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH------E 70
            D V++A G +  +E     ++G+K+    A   ++  QT++PN++A GDV        +
Sbjct: 222 ADMVILATGIKPNSE--LAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITK 279

Query: 71  KPE---LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEEL-Y 126
           KP    L   A + G++    + GN            T F  L     G++E +A++L  
Sbjct: 280 KPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNI 339

Query: 127 GADNLEIY---HAYYKP 140
               + +    HA Y P
Sbjct: 340 DYKTVFVKAKTHANYYP 356

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L+A GR+  T      NAG+ V    A +      T   N++A+GDV     + T +
Sbjct: 244 DALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTG-GLQFTYI 302

Query: 78  AVQAGKLLAARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGAD 129
           ++   +++   L G G  +  D +NV  +VF       VG++EE+A E  GAD
Sbjct: 303 SLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARE-SGAD 354

Length = 441

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 25/158 (15%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGD---VLH---EK 71
           D V++A G +  TE   + + G+K +   A I  +  +T+I N++A GD   + +    K
Sbjct: 236 DVVIVATGVKPNTE--FLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNK 293

Query: 72  PELTPVAVQA---GKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
               P+A  A   G+++   L G   +       A      LE    GL+EE+A++L G 
Sbjct: 294 NVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKL-GI 352

Query: 129 DNLEIY-----HAYYKPTEFFIPQRNPQRCYLKFIYHA 161
           D   ++     H  Y P          +  Y+K IY A
Sbjct: 353 DYKTVFIKDKNHTNYYP--------GQEDLYVKLIYEA 382

Length = 444

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKPELTP 76
           D VL AIG     E   +   GV +    A  ID D  +TN+P+++A+GDV   K +L  
Sbjct: 263 DKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVT-AKLQLAH 320

Query: 77  VAVQAGKLLAARLYGNGTTQM--DYQNVATTVFTPLEYGCVGLSEEKAEE 124
           VA +A  ++AA       T    DY+ +    F   +    GL+EE+A E
Sbjct: 321 VA-EAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQARE 369

Length = 466

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKP-EL 74
           T D +L+A GR    +      AGV+V  +      +  +T+   V+A+GDV    P +L
Sbjct: 253 TADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDV--SSPYQL 310

Query: 75  TPVAVQAGKLLAARL-YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
             VA    +++   L + N   +M +  V + VFT  +   VGL+E++A E
Sbjct: 311 KHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEARE 361

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           + +L+A GR   TE   + + GV+      +ID ++ QT +  ++A GD   ++P+   V
Sbjct: 263 EQLLVATGRTPNTENLNLESIGVETERGAIRID-EHLQTTVSGIYAAGDCT-DQPQFVYV 320

Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           A   G   A  + G G   +D   +   +FT  +   VGLSE +A+ 
Sbjct: 321 AAAGGSRAAINMTG-GDASLDLSAMPEVIFTDPQVATVGLSEAEAQA 366

Length = 468

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 47.8 bits (115), Expect = 4e-06
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 14/127 (11%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKV-----IPENAKIDSDNEQTNIPNVFAVGDVLHEKP 72
           D +L A GR   T+   + NAG++      +  N     +N QT +P+++AVGDV+   P
Sbjct: 262 DCLLYANGRTGNTDGLNLENAGLEADSRGQLKVN-----ENYQTAVPHIYAVGDVIG-FP 315

Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
            L   ++  G++ A    G  T  +  +++ T ++T  E   VG +E++          E
Sbjct: 316 SLASASMDQGRIAAQHAVGEATAHL-IEDIPTGIYTIPEISSVGKTEQELTAAKVP--YE 372

Query: 133 IYHAYYK 139
           +  A +K
Sbjct: 373 VGRARFK 379

Length = 461

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           +VLG   +G NAGE++     A++ G   E +  T+  HPTL E
Sbjct: 406 RVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 449

Length = 471

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 31/150 (20%), Positives = 67/150 (44%), Gaps = 16/150 (10%)

Query: 6   GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKV----IPENAKIDSDNE-QTNIPN 60
             +M+ + E   D+ L+A GR+  T    +    +++    +  +  +    E Q    N
Sbjct: 405 KKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDN 464

Query: 61  VFAVGD-----VLHEKPELTPVAV------QAGKLLAARLYGNGTTQMDYQNVATTVFTP 109
           +F +GD     +L        + V      +  + +   +    +  + Y+N+ +  +T 
Sbjct: 465 IFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTT 524

Query: 110 LEYGCVGLSEEKAEELYGADNLEIYHAYYK 139
            E   +GL+E++A+ELY  DN+ +  ++YK
Sbjct: 525 PELAFIGLTEKEAKELYPPDNVGVEISFYK 554

Length = 659

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 260 AAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           A   ++LG+H IGPNA E+I     A++   + E +      HPTL+E
Sbjct: 412 AKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSE 459

Length = 475

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D VL+AIGRR  T+   +   G+    +   + +D+ +T++P V+ +GDV    P L   
Sbjct: 266 DYVLVAIGRRPYTQGLGLETVGL-ETDKRGMLANDHHRTSVPGVWVIGDVT-SGPMLAHK 323

Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEE--KAE 123
           A         R+ G    +++Y  +   ++T  E   VG +EE  KAE
Sbjct: 324 AEDEAVACIERIAGK-AGEVNYGLIPGVIYTRPEVATVGKTEEQLKAE 370

Length = 466

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 44.0 bits (105), Expect = 7e-05
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           ++LG   +G +  E+I     A+  G  + TL   + IHPT++E
Sbjct: 404 RILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447

Length = 463

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 265 VLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
           VLG+H +G ++ E+IQ     +K         +T+G+HPT AEE 
Sbjct: 423 VLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEEL 467

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 13  FEDTYDTVLMAIGRRALTEETAVSNAGVKVIP-ENAKIDSDNEQTNIPNVFAVGDVLHEK 71
             D  DTV++AIG      +  +   G+K+      K+D + +QT+IP VFA GD +   
Sbjct: 370 KTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA 429

Query: 72  PELTPVAVQAGK 83
             +   A+  G+
Sbjct: 430 ALVV-WAIAEGR 440

Length = 457

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 13  FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKP 72
           F    DTV+ AIG    T   A    G+++  +   +  +   T+   VFA GDV+   P
Sbjct: 271 FVLEADTVVFAIGEIP-TPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVT-GP 328

Query: 73  ELTPVAVQAGKLLAAR 88
                A+++G L AA+
Sbjct: 329 SKIGKAIKSG-LRAAQ 343

Length = 352

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           + K++ + A   +VLG+H +GP+  E+I  +  A++   + E +  T   HPT +E
Sbjct: 396 FAKILAD-ARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSE 450

Length = 466

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 20  VLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVA 78
            LMA+G    T    +  AGV++ P +  I  D   +T++P ++A GD     P L  VA
Sbjct: 266 ALMAVGSVPNTAGLGLEEAGVELTP-SGHITVDRVSRTSVPGIYAAGDCTGVLP-LASVA 323

Query: 79  VQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
              G++      G   + +  + VA+ VFT  E   VG+S+   + 
Sbjct: 324 AMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDS 369

Length = 466

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 17/148 (11%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKI--DSDNEQTNIPNVFAVGDV---- 67
           E   D V++  G R        ++A   +      +  D     +  P+V+A GDV    
Sbjct: 223 EIKADLVIIGPGERPNVV--LANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP 280

Query: 68  -----LHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
                   +  L  +AV AG++ A  + G          V + V   L     GL+E K 
Sbjct: 281 AAETGKGGRIALWAIAVAAGRIAAENIAGALRIPGLLGTVISDVGD-LCAASTGLTEGK- 338

Query: 123 EELYGADNLEIYHAYYKPTEFFIPQRNP 150
            E      L +      P     P    
Sbjct: 339 -ERGIDVVLVVSGG-KDPRAHLYPGAEL 364

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG4716|consensus	503		100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PLN02507	499	glutathione reductase	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PLN02546	558	glutathione reductase	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
KOG1335|consensus	506		100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
KOG0405|consensus	478		100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.98
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	99.9
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.82
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.56
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.55
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.51
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.35
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.32
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.3
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.25
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.2
PRK12831	464	putative oxidoreductase; Provisional	99.19
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.17
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.17
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.16
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.16
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.15
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.12
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.11
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.09
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.09
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.09
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.08
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.07
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.06
PRK10262	321	thioredoxin reductase; Provisional	99.03
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.03
PRK13984	604	putative oxidoreductase; Provisional	99.02
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.99
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.96
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.96
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.96
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.91
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.89
KOG1336|consensus	478		98.84
PLN02852	491	ferredoxin-NADP+ reductase	98.53
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.46
KOG2495|consensus	491		98.45
KOG0404|consensus	322		98.42
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.4
KOG1346|consensus	659		98.27
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.78
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.73
KOG2755|consensus	334		97.49
KOG0399|consensus	2142		97.37
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.32
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.79
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	95.97
PRK08275	554	putative oxidoreductase; Provisional	95.26
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.12
KOG3851|consensus	446		94.42
PRK07804	541	L-aspartate oxidase; Provisional	94.1
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	93.75
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	93.39
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	93.22
PRK09077	536	L-aspartate oxidase; Provisional	92.97
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	92.49
PRK08071	510	L-aspartate oxidase; Provisional	92.15
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	92.15
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	91.91
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	91.87
PRK08401	466	L-aspartate oxidase; Provisional	91.72
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	91.31
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	91.08
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	90.74
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	90.71
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	90.69
PRK07512	513	L-aspartate oxidase; Provisional	90.57
KOG4716|consensus	503		90.22
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	88.85
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	88.58
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	88.47
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	88.09
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	87.66
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	87.57
PRK07395	553	L-aspartate oxidase; Provisional	87.52
PLN02815	594	L-aspartate oxidase	87.21
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	87.09
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	87.02
PRK06175	433	L-aspartate oxidase; Provisional	85.1
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	84.98
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	84.47
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	84.36
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	83.86
PRK08274	466	tricarballylate dehydrogenase; Validated	83.77
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	83.72
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	83.03
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	81.97
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	80.06

>KOG4716|consensus

Probab=100.00  E-value=2.5e-47  Score=369.91  Aligned_cols=219  Identities=64%  Similarity=1.083  Sum_probs=201.1

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      +-+-+.|.||||+||.++++.|+|+++|+++++..|.|.||+ -+||+|+|||+||+..+.+.|+++|++.||++|+.++
T Consensus       284 ~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf  363 (503)
T KOG4716|consen  284 EGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLF  363 (503)
T ss_pred             cccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHh
Confidence            334568999999999999999999999999975668999999 9999999999999998899999999999999999999


Q ss_pred             CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      +.....++|..+|+++||..|++.|||||++|-+.+|+||+++                                     
T Consensus       364 ~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dniev-------------------------------------  406 (503)
T KOG4716|consen  364 AGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEV-------------------------------------  406 (503)
T ss_pred             cCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEE-------------------------------------
Confidence            9888889999999999999999999999999999999887765                                     


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                           ||.||+|+||+||||                        +...
T Consensus       407 -------------------------------------fH~~f~P~E~~ipqr------------------------d~~~  425 (503)
T KOG4716|consen  407 -------------------------------------FHSYFKPLEYTIPQR------------------------DVRH  425 (503)
T ss_pred             -------------------------------------eeccccceEEEcccc------------------------cCCc
Confidence                                                 345555666666666                        2345


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCccc
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC  328 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~  328 (332)
                      ||+|.||++.+++||+|.|++||+|+|+||++|+|+++|+|..+|.+++++|||.+|+|+++.++||||.||+++|||
T Consensus       426 CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft~L~itKrsG~d~~~as~C  503 (503)
T KOG4716|consen  426 CYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTTLSITKRSGLDPTQASCC  503 (503)
T ss_pred             eEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhheeEEEEEecCCCCcccccCC
Confidence            889999998899999999999999999999999999999999999999999999999999999999999999999999

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=8.2e-43  Score=351.14  Aligned_cols=195  Identities=33%  Similarity=0.537  Sum_probs=174.5

Q ss_pred             EEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhCC
Q psy3825          14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGN   92 (332)
Q Consensus        14 ~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G~   92 (332)
                      ++++|.||+|+||+||++.|+|+++|++++ ++|+|.||+ ++|++|||||+|||+ +.++|+|+|..||++|++||+|.
T Consensus       258 ~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~-~rg~I~VD~~~~Tnvp~IyA~GDV~-~~~~Lah~A~~eg~iaa~~i~g~  335 (454)
T COG1249         258 TIEADAVLVAIGRKPNTDGLGLENAGVELD-DRGFIKVDDQMTTNVPGIYAIGDVI-GGPMLAHVAMAEGRIAAENIAGG  335 (454)
T ss_pred             EEEeeEEEEccCCccCCCCCChhhcCceEC-CCCCEEeCCccccCCCCEEEeeccC-CCcccHhHHHHHHHHHHHHHhCC
Confidence            788999999999999999999999999999 889999999 999999999999998 77889999999999999999985


Q ss_pred             CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCC
Q psy3825          93 GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQ  172 (332)
Q Consensus        93 ~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  172 (332)
                      .....++..+|+++|++|++|+||+||+||++++.  ++++....|....         |+                   
T Consensus       336 ~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~--~~~~~~~~f~~~~---------ra-------------------  385 (454)
T COG1249         336 KRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGI--DYKVGKFPFAANG---------RA-------------------  385 (454)
T ss_pred             CCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCC--ceEEEEeecccch---------hH-------------------
Confidence            55678999999999999999999999999999844  3666544332211         11                   


Q ss_pred             CCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceE
Q psy3825         173 RNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY  252 (332)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (332)
                                                                            +                 ..+..+||
T Consensus       386 ------------------------------------------------------~-----------------~~~~~~G~  394 (454)
T COG1249         386 ------------------------------------------------------I-----------------TMGETDGF  394 (454)
T ss_pred             ------------------------------------------------------H-----------------hccCCceE
Confidence                                                                  0                 23568899


Q ss_pred             EEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHH
Q psy3825         253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV  312 (332)
Q Consensus       253 ~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~  312 (332)
                      +|+++| +++++|||+|++|++|+|+|+.+++||++|+|.+++.+++++|||++|.+..+
T Consensus       395 ~Klv~d-~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a  453 (454)
T COG1249         395 VKLVVD-KETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEA  453 (454)
T ss_pred             EEEEEE-CCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHh
Confidence            999999 78999999999999999999999999999999999999999999999999875

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=2.6e-40  Score=333.58  Aligned_cols=220  Identities=55%  Similarity=0.972  Sum_probs=184.2

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||++.|+|+++|+++++++|+|.||+ +||++|+|||+|||+...+++++.|.+||+++|+||+|
T Consensus       264 ~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~  343 (484)
T TIGR01438       264 IEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS  343 (484)
T ss_pred             eEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence            47999999999999999999888999999972248999999 99999999999999844678999999999999999997


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      ......++..+|+++|++|++|+|||||+||++.+|.+.+++....|.+....                           
T Consensus       344 ~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~---------------------------  396 (484)
T TIGR01438       344 GSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWT---------------------------  396 (484)
T ss_pred             CCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhH---------------------------
Confidence            65445678889999999999999999999999875543455543322211100                           


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                             +|.                                               ..+.+.|
T Consensus       397 -----------------------~~~-----------------------------------------------~~~~~~g  406 (484)
T TIGR01438       397 -----------------------IPS-----------------------------------------------RDNSNKC  406 (484)
T ss_pred             -----------------------hhC-----------------------------------------------CCccCCc
Confidence                                   000                                               0123679


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR  329 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~  329 (332)
                      |+||+++++++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+.+++.++|+..+...++||.
T Consensus       407 ~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~~~~~~~~~~~~~~  484 (484)
T TIGR01438       407 YAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVTKRSGQDILQQGCCG  484 (484)
T ss_pred             EEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhhhhcCCCchhcccCC
Confidence            999999635689999999999999999999999999999999999999999999999999998877777777789984

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=7e-39  Score=319.48  Aligned_cols=203  Identities=38%  Similarity=0.685  Sum_probs=173.2

Q ss_pred             ecCCe-eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           8 SMDKV-FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         8 ~~~dg-~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      ..+++ +++++|.||+++|++||++.|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|.+||+++
T Consensus       244 ~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~-~~G~i~vd~~~~T~~p~IyAiGD~~-~~~~~~~~A~~~g~~a  321 (450)
T TIGR01421       244 HFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLN-EKGQIIVDEYQNTNVPGIYALGDVV-GKVELTPVAIAAGRKL  321 (450)
T ss_pred             EECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEEC-CCCcEEeCCCCcCCCCCEEEEEecC-CCcccHHHHHHHHHHH
Confidence            33445 5799999999999999999888899999998 789999999 999999999999999 7889999999999999


Q ss_pred             HHHHhCCC-CcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825          86 AARLYGNG-TTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK  164 (332)
Q Consensus        86 A~nI~G~~-~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  164 (332)
                      |+||+|.. ....++..+|+++|++|++|+||+||+||++.+|.+.+.+....+.+..         |            
T Consensus       322 a~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~---------~------------  380 (450)
T TIGR01421       322 SERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMY---------Y------------  380 (450)
T ss_pred             HHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhH---------H------------
Confidence            99999753 3456788999999999999999999999998755444555432221100         0            


Q ss_pred             CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825         165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (332)
                                                                                               +    + 
T Consensus       381 -------------------------------------------------------------------------~----~-  382 (450)
T TIGR01421       381 -------------------------------------------------------------------------A----M-  382 (450)
T ss_pred             -------------------------------------------------------------------------H----H-
Confidence                                                                                     0    0 


Q ss_pred             cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHH
Q psy3825         245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV  312 (332)
Q Consensus       245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~  312 (332)
                      ..+.+.||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..+
T Consensus       383 ~~~~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  449 (450)
T TIGR01421       383 TSEKQKCRMKLVCA-GKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM  449 (450)
T ss_pred             hcCCCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence            12467899999999 78999999999999999999999999999999999999999999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=5.4e-39  Score=318.95  Aligned_cols=202  Identities=38%  Similarity=0.628  Sum_probs=173.5

Q ss_pred             ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825           8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA   86 (332)
Q Consensus         8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA   86 (332)
                      .+.+++++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ +|||+|||||+|||+ +..++++.|.+||++||
T Consensus       243 ~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~l~~~A~~~g~~~a  320 (446)
T TIGR01424       243 TLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELN-DAGAIAVDEYSRTSIPSIYAVGDVT-DRINLTPVAIMEATCFA  320 (446)
T ss_pred             EEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEEC-CCCcEEeCCCCccCCCCEEEeeccC-CCccchhHHHHHHHHHH
Confidence            344567899999999999999999888899999998 789999999 999999999999999 67889999999999999


Q ss_pred             HHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825          87 ARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT  166 (332)
Q Consensus        87 ~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  166 (332)
                      +||+|.....+++..+|+++|++|++|+||+||+||++.++. ++.+....|.+.         .|              
T Consensus       321 ~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~-~~~~~~~~~~~~---------~~--------------  376 (446)
T TIGR01424       321 NTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTG-DILVYRAGFRPM---------KN--------------  376 (446)
T ss_pred             HHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCC-CEEEEEEecCch---------Hh--------------
Confidence            999986545678889999999999999999999999987433 355543322110         00              


Q ss_pred             ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825         167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (332)
                                                                                         ++         ..
T Consensus       377 -------------------------------------------------------------------~~---------~~  380 (446)
T TIGR01424       377 -------------------------------------------------------------------TF---------SG  380 (446)
T ss_pred             -------------------------------------------------------------------Hh---------hc
Confidence                                                                               00         12


Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHH
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV  312 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~  312 (332)
                      +.++||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.++
T Consensus       381 ~~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  445 (446)
T TIGR01424       381 RQEKTLMKLVVD-EKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM  445 (446)
T ss_pred             CCCceEEEEEEe-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence            456899999999 78999999999999999999999999999999999999999999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=7e-39  Score=317.35  Aligned_cols=204  Identities=42%  Similarity=0.676  Sum_probs=174.1

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+.+++++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|..||+.|
T Consensus       244 v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~g~~a  321 (450)
T PRK06116        244 LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLN-EKGYIIVDEYQNTNVPGIYAVGDVT-GRVELTPVAIAAGRRL  321 (450)
T ss_pred             EEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceEC-CCCcEecCCCCCcCCCCEEEEeecC-CCcCcHHHHHHHHHHH
Confidence            3445667899999999999999999888888999998 789999999 999999999999998 6788999999999999


Q ss_pred             HHHHhCCCC-cccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825          86 AARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK  164 (332)
Q Consensus        86 A~nI~G~~~-~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  164 (332)
                      |+||+|... ...++..+|+++|++|++|+||+||+||++.++.+++.+....+.+..         |.           
T Consensus       322 a~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~---------~~-----------  381 (450)
T PRK06116        322 SERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMY---------TA-----------  381 (450)
T ss_pred             HHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhH---------HH-----------
Confidence            999998554 457888999999999999999999999999844223554432221100         00           


Q ss_pred             CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825         165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (332)
                                                                                                    + 
T Consensus       382 ------------------------------------------------------------------------------~-  382 (450)
T PRK06116        382 ------------------------------------------------------------------------------L-  382 (450)
T ss_pred             ------------------------------------------------------------------------------H-
Confidence                                                                                          0 


Q ss_pred             cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHH
Q psy3825         245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV  312 (332)
Q Consensus       245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~  312 (332)
                      ..+.++||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.++
T Consensus       383 ~~~~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  449 (450)
T PRK06116        383 TGHRQPCLMKLVVV-GKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM  449 (450)
T ss_pred             hcCCCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence            12467899999999 78999999999999999999999999999999999999999999999999764

>PLN02507 glutathione reductase

Probab=100.00  E-value=1.8e-38  Score=321.19  Aligned_cols=204  Identities=36%  Similarity=0.583  Sum_probs=174.4

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+++++++++|.||+++|++||++.|+++++|++++ ++|+|.||+ +|||+|||||+|||+ +..++++.|.+||++|
T Consensus       279 v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~-~~G~I~Vd~~~~Ts~p~IyAiGDv~-~~~~l~~~A~~qg~~a  356 (499)
T PLN02507        279 VITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELD-KAGAVKVDEYSRTNIPSIWAIGDVT-NRINLTPVALMEGTCF  356 (499)
T ss_pred             EEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEEC-CCCcEecCCCCcCCCCCEEEeeEcC-CCCccHHHHHHHHHHH
Confidence            3345667899999999999999999988889999998 789999999 999999999999999 6788999999999999


Q ss_pred             HHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCC
Q psy3825          86 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKP  165 (332)
Q Consensus        86 A~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  165 (332)
                      |+||+|......++..+|+++|++|++|+|||||+||++.+|. ++.+....|.+..         |             
T Consensus       357 a~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~-~~~~~~~~~~~~~---------~-------------  413 (499)
T PLN02507        357 AKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKG-DILVFTSSFNPMK---------N-------------  413 (499)
T ss_pred             HHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCC-CEEEEEeecCccc---------c-------------
Confidence            9999986555567888999999999999999999999987543 3544332221100         0             


Q ss_pred             cccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccccccc
Q psy3825         166 TEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQ  245 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (332)
                                                                                            +++       
T Consensus       414 ----------------------------------------------------------------------~~~-------  416 (499)
T PLN02507        414 ----------------------------------------------------------------------TIS-------  416 (499)
T ss_pred             ----------------------------------------------------------------------ccc-------
Confidence                                                                                  001       


Q ss_pred             CCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825         246 RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT  313 (332)
Q Consensus       246 ~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  313 (332)
                      .+.+.||+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++
T Consensus       417 ~~~~~g~~Kli~d-~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~  483 (499)
T PLN02507        417 GRQEKTVMKLIVD-AETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMR  483 (499)
T ss_pred             cCCCCEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHH
Confidence            1346799999999 789999999999999999999999999999999999999999999999999876

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=1.2e-38  Score=322.14  Aligned_cols=206  Identities=30%  Similarity=0.505  Sum_probs=174.1

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+++++++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|.+||+++
T Consensus       267 v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~-~~G~I~Vd~~l~Ts~~~IyA~GDv~-~~~~l~~~A~~qG~~a  344 (486)
T TIGR01423       267 VTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT-KKGAIQVDEFSRTNVPNIYAIGDVT-DRVMLTPVAINEGAAF  344 (486)
T ss_pred             EEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceEC-CCCCEecCCCCcCCCCCEEEeeecC-CCcccHHHHHHHHHHH
Confidence            3344566899999999999999999988899999998 789999999 999999999999999 7889999999999999


Q ss_pred             HHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCC
Q psy3825          86 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKP  165 (332)
Q Consensus        86 A~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  165 (332)
                      ++||+|.....+++..+|+++|+.|++|+|||||+||++. +. ++.+....+.+..     +.                
T Consensus       345 a~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~-~~-~~~~~~~~~~~~~-----~~----------------  401 (486)
T TIGR01423       345 VDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKK-FE-KVAVYESSFTPLM-----HN----------------  401 (486)
T ss_pred             HHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhc-CC-ceEEEEEeeCchh-----hh----------------
Confidence            9999986545567888999999999999999999999986 32 3444332221100     00                


Q ss_pred             cccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccccccc
Q psy3825         166 TEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQ  245 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (332)
                                                                                             .+      .
T Consensus       402 -----------------------------------------------------------------------~~------~  404 (486)
T TIGR01423       402 -----------------------------------------------------------------------IS------G  404 (486)
T ss_pred             -----------------------------------------------------------------------hc------c
Confidence                                                                                   00      0


Q ss_pred             CCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         246 RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       246 ~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      .....||+||++| +++++|||+|++|++|+|+|+.+++||++++|++||.+++++|||++|.+..+...
T Consensus       405 ~~~~~g~~Klv~d-~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~  473 (486)
T TIGR01423       405 SKYKKFVAKIVTN-HADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTP  473 (486)
T ss_pred             CccCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhccc
Confidence            1124799999999 78999999999999999999999999999999999999999999999999998643

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4.6e-38  Score=313.52  Aligned_cols=199  Identities=30%  Similarity=0.441  Sum_probs=172.9

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||++.|++++.|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++||.||+|
T Consensus       258 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~-~~g~i~vd~~~~Ts~p~IyAiGD~~-~~~~l~~~A~~~g~~aa~~i~g  335 (466)
T PRK07818        258 QELEADKVLQAIGFAPRVEGYGLEKTGVALT-DRGAIAIDDYMRTNVPHIYAIGDVT-AKLQLAHVAEAQGVVAAETIAG  335 (466)
T ss_pred             EEEEeCEEEECcCcccCCCCCCchhcCcEEC-CCCcEeeCCCcccCCCCEEEEeecC-CCcccHhHHHHHHHHHHHHHcC
Confidence            5799999999999999999888899999998 789999999 999999999999999 6788999999999999999998


Q ss_pred             CCCccc-ccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          92 NGTTQM-DYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        92 ~~~~~~-~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      .....+ ++..+|.++|++|++|+||+||+||+++ |. ++.+....|.         +..|.                 
T Consensus       336 ~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~-----------------  387 (466)
T PRK07818        336 AETLELGDYRMMPRATFCQPQVASFGLTEEQAREE-GY-DVKVAKFPFT---------ANGKA-----------------  387 (466)
T ss_pred             CCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhC-CC-cEEEEEEECC---------ccchh-----------------
Confidence            654445 7888999999999999999999999987 53 3554432221         11110                 


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                                      .         ..+.+.
T Consensus       388 ----------------------------------------------------------------~---------~~~~~~  394 (466)
T PRK07818        388 ----------------------------------------------------------------H---------GLGDPT  394 (466)
T ss_pred             ----------------------------------------------------------------h---------hcCCCC
Confidence                                                                            0         124578


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.+++..
T Consensus       395 g~~Klv~~-~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  458 (466)
T PRK07818        395 GFVKLVAD-AKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHG  458 (466)
T ss_pred             eEEEEEEE-CCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHH
Confidence            99999999 78999999999999999999999999999999999999999999999999988874

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=3.3e-38  Score=314.81  Aligned_cols=202  Identities=28%  Similarity=0.399  Sum_probs=172.5

Q ss_pred             cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      ..+++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ ||||+|+|||+|||+ +.+++++.|.+||+++|+
T Consensus       246 ~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~l~~~A~~~g~~~a~  323 (452)
T TIGR03452       246 LDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVD-EDGRIKVDEYGRTSARGVWALGDVS-SPYQLKHVANAEARVVKH  323 (452)
T ss_pred             EcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeEC-CCCcEeeCCCcccCCCCEEEeeccc-CcccChhHHHHHHHHHHH
Confidence            34566899999999999999999988888999998 789999999 999999999999999 678999999999999999


Q ss_pred             HHhCCCC-cccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825          88 RLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT  166 (332)
Q Consensus        88 nI~G~~~-~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  166 (332)
                      ||+|... ...++..+|+++|++|++|+||+||+||++. |. ++++....|.         +..|+             
T Consensus       324 ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~-g~-~~~~~~~~~~---------~~~~~-------------  379 (452)
T TIGR03452       324 NLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREA-GH-DITVKIQNYG---------DVAYG-------------  379 (452)
T ss_pred             HhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhc-CC-CeEEEEecCC---------chhhH-------------
Confidence            9998643 3577888999999999999999999999987 53 3444332211         10000             


Q ss_pred             ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825         167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (332)
                                                                                          +         ..
T Consensus       380 --------------------------------------------------------------------~---------~~  382 (452)
T TIGR03452       380 --------------------------------------------------------------------W---------AM  382 (452)
T ss_pred             --------------------------------------------------------------------h---------hc
Confidence                                                                                0         12


Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHHh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTI  314 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~~  314 (332)
                      +.+.||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.++ +++|||++|.+..++.
T Consensus       383 ~~~~g~~Klv~d-~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~  450 (452)
T TIGR03452       383 EDTTGFCKLIAD-RDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALL  450 (452)
T ss_pred             CCCCeEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHh
Confidence            456799999999 789999999999999999999999999999999999996 8899999999988765

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=5.3e-38  Score=328.39  Aligned_cols=222  Identities=23%  Similarity=0.379  Sum_probs=178.7

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCC------CCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTN------IPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTS------vpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +++++|.||||+|++||++.|+|+++|++++  +|+|.||+ |||+      +|||||+|||+ +.+++++.|.+||++|
T Consensus       412 ~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~--~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~-g~~~La~~A~~qg~~a  488 (659)
T PTZ00153        412 KETYVDSCLVATGRKPNTNNLGLDKLKIQMK--RGFVSVDEHLRVLREDQEVYDNIFCIGDAN-GKQMLAHTASHQALKV  488 (659)
T ss_pred             eEEEcCEEEEEECcccCCccCCchhcCCccc--CCEEeECCCCCcCCCCCCCCCCEEEEEecC-CCccCHHHHHHHHHHH
Confidence            4799999999999999999998899999886  58999999 9997      69999999998 7889999999999999


Q ss_pred             HHHHhCCC------------CcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccch
Q psy3825          86 AARLYGNG------------TTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRC  153 (332)
Q Consensus        86 A~nI~G~~------------~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~  153 (332)
                      ++||+|..            ...+++..+|+++|++|++|+|||||+||++.+..+++.+....|+.....+..      
T Consensus       489 a~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~------  562 (659)
T PTZ00153        489 VDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCE------  562 (659)
T ss_pred             HHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhc------
Confidence            99999852            345788899999999999999999999999984334566665555432211100      


Q ss_pred             hhhhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhc
Q psy3825         154 YLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYH  233 (332)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (332)
                                  +                                                 ++++|.|-.        |
T Consensus       563 ------------~-------------------------------------------------~~~~p~~~~--------~  573 (659)
T PTZ00153        563 ------------N-------------------------------------------------NISFPNNSK--------N  573 (659)
T ss_pred             ------------c-------------------------------------------------ccccccccc--------c
Confidence                        0                                                 122222210        1


Q ss_pred             ccCCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825         234 AYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT  313 (332)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  313 (332)
                      ..|.|+.+.  ..+.++||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..++
T Consensus       574 ~~y~~g~~~--~~~~~~G~vKli~d-~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~  650 (659)
T PTZ00153        574 NSYNKGKYN--TVDNTEGMVKIVYL-KDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAF  650 (659)
T ss_pred             ccccccccc--cccCCceEEEEEEE-CCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHH
Confidence            122232211  12347899999999 789999999999999999999999999999999999999999999999999887


Q ss_pred             hh
Q psy3825         314 IT  315 (332)
Q Consensus       314 ~~  315 (332)
                      ..
T Consensus       651 ~~  652 (659)
T PTZ00153        651 KA  652 (659)
T ss_pred             HH
Confidence            64

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=7.9e-38  Score=311.23  Aligned_cols=202  Identities=24%  Similarity=0.381  Sum_probs=174.6

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      ++.++++|.||+|+|++||++.|++++.|++++ ++|+|.||+ |||++|||||+|||+ +.+.+++.|..||++||+||
T Consensus       254 ~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~-~~G~i~vd~~l~t~~~~IyAiGD~~-~~~~~~~~A~~~g~~aa~ni  331 (463)
T PRK06370        254 GAPEITGSHILVAVGRVPNTDDLGLEAAGVETD-ARGYIKVDDQLRTTNPGIYAAGDCN-GRGAFTHTAYNDARIVAANL  331 (463)
T ss_pred             CceEEEeCEEEECcCCCcCCCCcCchhhCceEC-CCCcEeECcCCcCCCCCEEEeeecC-CCcccHHHHHHHHHHHHHHH
Confidence            456799999999999999999777888999998 789999999 999999999999998 67889999999999999999


Q ss_pred             hCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccc
Q psy3825          90 YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFF  169 (332)
Q Consensus        90 ~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  169 (332)
                      ++.....+++..+|+++|++|++|+||+||+||++. |. ++.+.+..|.         +..|.                
T Consensus       332 ~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~-g~-~~~~~~~~~~---------~~~~~----------------  384 (463)
T PRK06370        332 LDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKS-GR-RVLVGTRPMT---------RVGRA----------------  384 (463)
T ss_pred             hCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHc-CC-CeEEEEEecC---------cchhH----------------
Confidence            986445677888999999999999999999999987 53 3555433221         10010                


Q ss_pred             cCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCc
Q psy3825         170 IPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQ  249 (332)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (332)
                                                                                       +         ..+.+
T Consensus       385 -----------------------------------------------------------------~---------~~~~~  390 (463)
T PRK06370        385 -----------------------------------------------------------------V---------EKGET  390 (463)
T ss_pred             -----------------------------------------------------------------H---------hcCCC
Confidence                                                                             0         12457


Q ss_pred             ceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhh
Q psy3825         250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITK  316 (332)
Q Consensus       250 ~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~  316 (332)
                      +||+||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.+++...
T Consensus       391 ~g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~  456 (463)
T PRK06370        391 QGFMKVVVD-ADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQAL  456 (463)
T ss_pred             CEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhh
Confidence            899999999 789999999999999999999999999999999999999999999999999998753

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=8e-38  Score=312.24  Aligned_cols=205  Identities=26%  Similarity=0.380  Sum_probs=174.3

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+++++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ +|||+|||||+|||+ +.+++++.|.+||+++
T Consensus       241 v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~-~~G~i~Vd~~~~Ts~p~IyA~GD~~-~~~~l~~~A~~~g~~~  318 (451)
T PRK07846        241 LRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVD-EDGRVVVDEYQRTSAEGVFALGDVS-SPYQLKHVANHEARVV  318 (451)
T ss_pred             EEECCCcEeecCEEEEEECCccCccccCchhcCceEC-CCCcEeECCCcccCCCCEEEEeecC-CCccChhHHHHHHHHH
Confidence            3445677899999999999999999988889999998 789999999 999999999999999 6788999999999999


Q ss_pred             HHHHhCCC-CcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825          86 AARLYGNG-TTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK  164 (332)
Q Consensus        86 A~nI~G~~-~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  164 (332)
                      ++||++.. ....++..+|+++|++|++|+||+||+||++. |. ++.+....|+         +..|.           
T Consensus       319 a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~-----------  376 (451)
T PRK07846        319 QHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAA-GL-DITVKVQNYG---------DVAYG-----------  376 (451)
T ss_pred             HHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhc-CC-CEEEEEEecC---------cchhh-----------
Confidence            99999753 23567888999999999999999999999987 54 3555433221         10010           


Q ss_pred             CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825         165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (332)
                                                                                             +        
T Consensus       377 -----------------------------------------------------------------------~--------  377 (451)
T PRK07846        377 -----------------------------------------------------------------------W--------  377 (451)
T ss_pred             -----------------------------------------------------------------------h--------
Confidence                                                                                   0        


Q ss_pred             cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHHhh
Q psy3825         245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~~~  315 (332)
                      ..+.++||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.++ +++|||++|.+..++..
T Consensus       378 ~~~~~~g~~Kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~  448 (451)
T PRK07846        378 AMEDTTGFVKLIAD-RDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALLG  448 (451)
T ss_pred             hCCCCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHHh
Confidence            12456799999999 789999999999999999999999999999999999986 58999999999888763

>PLN02546 glutathione reductase

Probab=100.00  E-value=6.1e-38  Score=322.44  Aligned_cols=203  Identities=40%  Similarity=0.691  Sum_probs=173.2

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      ++++.+.+|.||+++|++||+++|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|..||+++|.|
T Consensus       332 ~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d-~~G~I~VD~~l~Ts~p~IYAaGDv~-~~~~l~~~A~~~g~~~a~~  409 (558)
T PLN02546        332 NKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMD-KNGAIEVDEYSRTSVPSIWAVGDVT-DRINLTPVALMEGGALAKT  409 (558)
T ss_pred             CCeEEEecCEEEEeeccccCCCcCChhhcCCcCC-CCCcEeECCCceeCCCCEEEeeccC-CCcccHHHHHHHHHHHHHH
Confidence            3444455899999999999999888899999998 789999999 999999999999999 6788999999999999999


Q ss_pred             HhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccc
Q psy3825          89 LYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEF  168 (332)
Q Consensus        89 I~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  168 (332)
                      |+|......++..+|+++|++|++|+|||||+||++.++  ++++....|.+..         |                
T Consensus       410 i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~--~~~~~~~~~~~~~---------~----------------  462 (558)
T PLN02546        410 LFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANFRPLK---------A----------------  462 (558)
T ss_pred             HcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCC--CeEEEEEecccch---------h----------------
Confidence            998654456788999999999999999999999999743  3565443322110         0                


Q ss_pred             ccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCC
Q psy3825         169 FIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP  248 (332)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (332)
                                                                                        ++        ..+.
T Consensus       463 ------------------------------------------------------------------~~--------~~~~  468 (558)
T PLN02546        463 ------------------------------------------------------------------TL--------SGLP  468 (558)
T ss_pred             ------------------------------------------------------------------hh--------hCCC
Confidence                                                                              00        1135


Q ss_pred             cceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH-hhh
Q psy3825         249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT-ITK  316 (332)
Q Consensus       249 ~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~-~~~  316 (332)
                      ++||+||++| +++++|||+|++|++|.|+||.+++||++|+|++||.+++++|||++|.|..+. .++
T Consensus       469 ~~g~~Klv~d-~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~~~~~  536 (558)
T PLN02546        469 DRVFMKLIVC-AKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMRTPTR  536 (558)
T ss_pred             CcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHhhhcc
Confidence            6899999999 789999999999999999999999999999999999999999999999999887 443

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=1.2e-37  Score=311.51  Aligned_cols=204  Identities=24%  Similarity=0.338  Sum_probs=175.2

Q ss_pred             ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825           8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA   86 (332)
Q Consensus         8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA   86 (332)
                      .+.+++++++|.||+++|++||++.|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|..||++|+
T Consensus       254 ~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~-~~G~i~Vd~~~~Ts~~~IyA~GD~~-~~~~l~~~A~~~g~~aa  331 (466)
T PRK07845        254 TLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELT-PSGHITVDRVSRTSVPGIYAAGDCT-GVLPLASVAAMQGRIAM  331 (466)
T ss_pred             EECCCcEEEecEEEEeecCCcCCCCCCchhhCceEC-CCCcEeECCCcccCCCCEEEEeecc-CCccchhHHHHHHHHHH
Confidence            334567899999999999999999888899999998 789999999 999999999999999 77899999999999999


Q ss_pred             HHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825          87 ARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT  166 (332)
Q Consensus        87 ~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  166 (332)
                      .|++|....+.++..+|+++|++|++|+||+||++|++. |. ++++....+         .+..|.             
T Consensus       332 ~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~---------~~~~~~-------------  387 (466)
T PRK07845        332 YHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSG-EV-PARTVMLPL---------ATNPRA-------------  387 (466)
T ss_pred             HHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhC-CC-ceEEEEEec---------ccCchh-------------
Confidence            999986545677889999999999999999999999986 43 244432211         110010             


Q ss_pred             ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825         167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (332)
                                                                                          .         ..
T Consensus       388 --------------------------------------------------------------------~---------~~  390 (466)
T PRK07845        388 --------------------------------------------------------------------K---------MS  390 (466)
T ss_pred             --------------------------------------------------------------------h---------hc
Confidence                                                                                0         12


Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +.++||+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus       391 ~~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  458 (466)
T PRK07845        391 GLRDGFVKLFCR-PGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARR  458 (466)
T ss_pred             CCCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHHH
Confidence            457899999999 78999999999999999999999999999999999999999999999999888764

>KOG1335|consensus

Probab=100.00  E-value=1.7e-38  Score=311.91  Aligned_cols=205  Identities=29%  Similarity=0.487  Sum_probs=180.9

Q ss_pred             ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825           8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA   86 (332)
Q Consensus         8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA   86 (332)
                      ..++.++++||++|+++||+|-+++|+|++.|++.| ++|+|.||+ ++|.+||||+||||+ .+|||+|.|..||..+.
T Consensus       294 k~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D-~r~rv~v~~~f~t~vP~i~~IGDv~-~gpMLAhkAeeegI~~V  371 (506)
T KOG1335|consen  294 KTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELD-KRGRVIVNTRFQTKVPHIYAIGDVT-LGPMLAHKAEEEGIAAV  371 (506)
T ss_pred             CCCceeEEEeeEEEEEccCcccccCCChhhcccccc-cccceeccccccccCCceEEecccC-Ccchhhhhhhhhchhhe
Confidence            345667899999999999999999999999999999 899999999 999999999999999 89999999999999999


Q ss_pred             HHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825          87 ARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT  166 (332)
Q Consensus        87 ~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  166 (332)
                      +.|.|.. ...+|..+|.++|+.||+||||+||+++++. |- .+.+....|+.+.         |+             
T Consensus       372 E~i~g~~-~hv~ynciP~v~ythPEvawVG~TEeqlkee-gi-~y~vgkfpF~aNs---------Ra-------------  426 (506)
T KOG1335|consen  372 EGIAGGH-GHVDYNCIPSVVYTHPEVAWVGKTEEQLKEE-GI-KYKVGKFPFSANS---------RA-------------  426 (506)
T ss_pred             eeecccC-cccccCCCCceeecccceeeeccchhhHHhc-Cc-ceEeeeccccccc---------hh-------------
Confidence            9998754 3578888999999999999999999999997 43 3555543332111         11             


Q ss_pred             ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825         167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (332)
                                    |                                                               ..
T Consensus       427 --------------k---------------------------------------------------------------tn  429 (506)
T KOG1335|consen  427 --------------K---------------------------------------------------------------TN  429 (506)
T ss_pred             --------------h---------------------------------------------------------------cc
Confidence                          0                                                               24


Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhc
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKR  317 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~  317 (332)
                      ++.+||+|+++| ++++||||+||+|++|+|||++.++||..|.+.+|+++..++|||+||+|.++....-
T Consensus       430 ~d~eg~vKvl~d-~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~  499 (506)
T KOG1335|consen  430 NDTEGFVKVLAD-KETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAY  499 (506)
T ss_pred             CCccceeEEEec-CCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHhh
Confidence            678999999999 8999999999999999999999999999999999999999999999999999987643

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=4.9e-38  Score=317.83  Aligned_cols=234  Identities=40%  Similarity=0.661  Sum_probs=183.3

Q ss_pred             ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCCCCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825           8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus         8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDelqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      .+.+++++++|.||+++|++||+++|+++++|++++ ++|+|.+++.+|++|+|||+|||+.+.+++++.|.+||+++|+
T Consensus       258 ~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~-~~G~ii~~~~~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~  336 (499)
T PTZ00052        258 LFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVN-KSNKIIAPNDCTNIPNIFAVGDVVEGRPELTPVAIKAGILLAR  336 (499)
T ss_pred             EECCCCEEEcCEEEEeeCCCCCccccCchhcCcEEC-CCCCEeeCCCcCCCCCEEEEEEecCCCcccHHHHHHHHHHHHH
Confidence            344567799999999999999999988889999998 7887655544899999999999985567899999999999999


Q ss_pred             HHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcc
Q psy3825          88 RLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTE  167 (332)
Q Consensus        88 nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  167 (332)
                      ||+|......++..+|+++|++|++|+|||||+||++.+|.+.+++....|.........+.                  
T Consensus       337 ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  398 (499)
T PTZ00052        337 RLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHRE------------------  398 (499)
T ss_pred             HHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhccccc------------------
Confidence            99986555678889999999999999999999999988554456665444432111000000                  


Q ss_pred             cccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCC
Q psy3825         168 FFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRN  247 (332)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (332)
                       ++                                                               ....+.++.  ...
T Consensus       399 -~~---------------------------------------------------------------~~~~~~~~~--~~~  412 (499)
T PTZ00052        399 -KH---------------------------------------------------------------ERARKDEYD--FDV  412 (499)
T ss_pred             -cc---------------------------------------------------------------ccccccccc--ccc
Confidence             00                                                               000000000  012


Q ss_pred             CcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCc
Q psy3825         248 PQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQS  326 (332)
Q Consensus       248 ~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~  326 (332)
                      .++||+||+++++++++|||+|++|++|+|+|+.+++||++++|++||.+++++|||++|.+..+..+.|+++....-.
T Consensus       413 ~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~~~~~~~~~~~~~~  491 (499)
T PTZ00052        413 SSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNLSVTRRSGESFAAKG  491 (499)
T ss_pred             cCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEEEEeeccCCCChhhcc
Confidence            4689999999932489999999999999999999999999999999999999999999999999998888877554433

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.4e-37  Score=307.41  Aligned_cols=198  Identities=26%  Similarity=0.385  Sum_probs=170.2

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      .++++|.|++|+|++||++.|.++++|++++ ++|+|.||+ ||||+|||||+|||+ +.+++++.|..||+++++||+|
T Consensus       239 g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~a~~~~~~~~~~~~g  316 (441)
T PRK08010        239 AQLAVDALLIASGRQPATASLHPENAGIAVN-ERGAIVVDKYLHTTADNIWAMGDVT-GGLQFTYISLDDYRIVRDELLG  316 (441)
T ss_pred             CeEEeCEEEEeecCCcCCCCcCchhcCcEEC-CCCcEEECCCcccCCCCEEEeeecC-CCccchhHHHHHHHHHHHHHcC
Confidence            3589999999999999999887888999998 789999999 999999999999999 7889999999999999999998


Q ss_pred             C-CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          92 N-GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        92 ~-~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      . .....++..+|+++|++|++|+||+||+||++. |. ++.+....++         +..|.                 
T Consensus       317 ~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~-----------------  368 (441)
T PRK08010        317 EGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARES-GA-DIQVVTLPVA---------AIPRA-----------------  368 (441)
T ss_pred             CCCcccCccCCCCEEEECCCCceeeeCCHHHHHHc-CC-CeEEEEEecC---------cChhh-----------------
Confidence            5 223457788999999999999999999999987 54 3555433221         11110                 


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                                      .         ..+...
T Consensus       369 ----------------------------------------------------------------~---------~~~~~~  375 (441)
T PRK08010        369 ----------------------------------------------------------------R---------VMNDTR  375 (441)
T ss_pred             ----------------------------------------------------------------h---------hcCCCc
Confidence                                                                            0         123567


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHh
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI  314 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~  314 (332)
                      ||+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+.+++.
T Consensus       376 g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  438 (441)
T PRK08010        376 GVLKAIVD-NKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS  438 (441)
T ss_pred             eEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence            99999999 7899999999999999999999999999999999999999999999999988864

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.2e-37  Score=312.59  Aligned_cols=209  Identities=26%  Similarity=0.363  Sum_probs=176.2

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      .++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ ||||+|||||+|||+ +.+.+++.|..||++||.||+|
T Consensus       268 g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~-~~G~i~Vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~G~~aa~~i~g  345 (479)
T PRK14727        268 GELRAEKLLISTGRHANTHDLNLEAVGVTTD-TSGAIVVNPAMETSAPDIYAAGDCS-DLPQFVYVAAAAGSRAGINMTG  345 (479)
T ss_pred             CeEEeCEEEEccCCCCCccCCCchhhCceec-CCCCEEECCCeecCCCCEEEeeecC-CcchhhhHHHHHHHHHHHHHcC
Confidence            3589999999999999999888888999998 789999999 999999999999999 7788999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .. ..+++..+|+++|++|++|+||+||+||++. |. ++.+....+         .+..|                   
T Consensus       346 ~~-~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~-g~-~~~~~~~~~---------~~~~~-------------------  394 (479)
T PRK14727        346 GN-ATLDLSAMPAVIFTDPQVATVGLSEAKAHLS-GI-ETISRVLTM---------ENVPR-------------------  394 (479)
T ss_pred             CC-cccccccCCcEEEecCceeeeeCCHHHHHHc-CC-ceEEEEEEc---------ccCch-------------------
Confidence            64 4577888999999999999999999999987 53 244332211         11001                   


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                      +++       .+.++|
T Consensus       395 ----------------------------------------------------------------~~~-------~~~~~g  403 (479)
T PRK14727        395 ----------------------------------------------------------------ALA-------NFETDG  403 (479)
T ss_pred             ----------------------------------------------------------------hhh-------cCCCCe
Confidence                                                                            001       235789


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCccc
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC  328 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~  328 (332)
                      ++||++| +++++|||+|++|++|.|+|+.+++||+.|+|++||.+++++|||++|.+..++....  .+++..+||
T Consensus       404 ~~Kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~--~~~~~~~~~  477 (479)
T PRK14727        404 FIKLVAE-EGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQTFR--KDVKELSCC  477 (479)
T ss_pred             EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHHhhh--hcchhhhhh
Confidence            9999999 7899999999999999999999999999999999999999999999999999886432  234556776

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=1.5e-37  Score=307.98  Aligned_cols=201  Identities=25%  Similarity=0.347  Sum_probs=173.5

Q ss_pred             cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      .++++++++|.||+|+|++||++.++++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||++||.
T Consensus       253 ~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~t~~~~IyAiGD~~-~~~~~~~~A~~~g~~aa~  330 (461)
T PRK05249        253 LKSGKKIKADCLLYANGRTGNTDGLNLENAGLEAD-SRGQLKVNENYQTAVPHIYAVGDVI-GFPSLASASMDQGRIAAQ  330 (461)
T ss_pred             ECCCCEEEeCEEEEeecCCccccCCCchhhCcEec-CCCcEeeCCCcccCCCCEEEeeecC-CCcccHhHHHHHHHHHHH
Confidence            34566899999999999999999888899999998 789999999 999999999999999 778899999999999999


Q ss_pred             HHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcc
Q psy3825          88 RLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTE  167 (332)
Q Consensus        88 nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  167 (332)
                      ||+|.. ...++..+|+++|+.|++|+||+||+||++. |. ++++....|...         .|.              
T Consensus       331 ~i~g~~-~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~-g~-~~~~~~~~~~~~---------~~~--------------  384 (461)
T PRK05249        331 HAVGEA-TAHLIEDIPTGIYTIPEISSVGKTEQELTAA-KV-PYEVGRARFKEL---------ARA--------------  384 (461)
T ss_pred             HHcCCC-cccccCCCCeEEECCCcceEecCCHHHHHHc-CC-CeEEEEEccccc---------cce--------------
Confidence            999754 3467888999999999999999999999987 43 355543322110         010              


Q ss_pred             cccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCC
Q psy3825         168 FFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRN  247 (332)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (332)
                                                                                         .         ..+
T Consensus       385 -------------------------------------------------------------------~---------~~~  388 (461)
T PRK05249        385 -------------------------------------------------------------------Q---------IAG  388 (461)
T ss_pred             -------------------------------------------------------------------e---------ecC
Confidence                                                                               0         124


Q ss_pred             CcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHh
Q psy3825         248 PQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI  314 (332)
Q Consensus       248 ~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~  314 (332)
                      .+.||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..++.
T Consensus       389 ~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~  454 (461)
T PRK05249        389 DNVGMLKILFH-RETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAAL  454 (461)
T ss_pred             CCCcEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence            57899999999 7899999999999999999999999999999999999999999999999998875

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.8e-37  Score=307.32  Aligned_cols=202  Identities=30%  Similarity=0.429  Sum_probs=173.9

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      ++++++++|.||+|+|++||++.|.++++|++++ ++|+|.||+ +|||+|+|||+|||+ +.+++++.|..||++||.|
T Consensus       250 ~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~-~~g~i~vd~~~~ts~~~IyA~GD~~-~~~~~~~~A~~qg~~aa~~  327 (460)
T PRK06292        250 GKTETIEADYVLVATGRRPNTDGLGLENTGIELD-ERGRPVVDEHTQTSVPGIYAAGDVN-GKPPLLHEAADEGRIAAEN  327 (460)
T ss_pred             CceEEEEeCEEEEccCCccCCCCCCcHhhCCEec-CCCcEeECCCcccCCCCEEEEEecC-CCccchhHHHHHHHHHHHH
Confidence            4456799999999999999999888889999998 789999999 999999999999999 6788999999999999999


Q ss_pred             HhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccc
Q psy3825          89 LYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEF  168 (332)
Q Consensus        89 I~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  168 (332)
                      |++......++..+|+++|++|++|+||+||+||++. |. ++++....++         +..|.               
T Consensus       328 i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~-g~-~~~~~~~~~~---------~~~~~---------------  381 (460)
T PRK06292        328 AAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAA-GI-DYVVGEVPFE---------AQGRA---------------  381 (460)
T ss_pred             hcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhc-CC-CeEEEEEecc---------cchHH---------------
Confidence            9985334567888999999999999999999999986 53 3554433221         11111               


Q ss_pred             ccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCC
Q psy3825         169 FIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP  248 (332)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (332)
                                                                                        .         ..+.
T Consensus       382 ------------------------------------------------------------------~---------~~~~  386 (460)
T PRK06292        382 ------------------------------------------------------------------R---------VMGK  386 (460)
T ss_pred             ------------------------------------------------------------------H---------hcCC
Confidence                                                                              0         0145


Q ss_pred             cceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       249 ~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +.||+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus       387 ~~g~~klv~d-~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  452 (460)
T PRK06292        387 NDGFVKVYAD-KKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRD  452 (460)
T ss_pred             CCeEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHH
Confidence            7899999999 78999999999999999999999999999999999999999999999999998764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.8e-37  Score=310.94  Aligned_cols=198  Identities=29%  Similarity=0.430  Sum_probs=172.4

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||+++|.++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|.+||++||.||+|
T Consensus       259 ~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~-~~G~I~Vd~~~~t~~p~VyAiGDv~-~~~~la~~A~~eG~~aa~~i~g  336 (471)
T PRK06467        259 EPQRYDAVLVAVGRVPNGKLLDAEKAGVEVD-ERGFIRVDKQCRTNVPHIFAIGDIV-GQPMLAHKGVHEGHVAAEVIAG  336 (471)
T ss_pred             eEEEeCEEEEeecccccCCccChhhcCceEC-CCCcEeeCCCcccCCCCEEEehhhc-CCcccHHHHHHHHHHHHHHHcC
Confidence            5799999999999999999887889999998 789999999 999999999999998 7788999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .. ..+++..+|+++|++|++|+||+||+||++. |. ++.+....|.         +..|.                  
T Consensus       337 ~~-~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~-g~-~~~~~~~~~~---------~~~~~------------------  386 (471)
T PRK06467        337 KK-HYFDPKVIPSIAYTEPEVAWVGLTEKEAKEE-GI-EYETATFPWA---------ASGRA------------------  386 (471)
T ss_pred             CC-CCCCCCCCCeEEECCCceeEEECCHHHHHhc-CC-CeEEEEEecC---------cchhh------------------
Confidence            54 4578888999999999999999999999987 53 3554432221         10010                  


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                     .         ..+.++|
T Consensus       387 ---------------------------------------------------------------~---------~~~~~~g  394 (471)
T PRK06467        387 ---------------------------------------------------------------I---------ASDCADG  394 (471)
T ss_pred             ---------------------------------------------------------------h---------hCCCCce
Confidence                                                                           0         1246789


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      |+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++..
T Consensus       395 ~~kli~d-~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~  457 (471)
T PRK06467        395 MTKLIFD-KETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEA  457 (471)
T ss_pred             EEEEEEE-CCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHh
Confidence            9999999 78999999999999999999999999999999999999999999999999988764

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=2.6e-37  Score=307.14  Aligned_cols=212  Identities=32%  Similarity=0.441  Sum_probs=178.6

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ++++++|.||+|+|++||++.|++++.|++++ ++|+|.||+ |||++|||||+|||+ +.+++++.|..||++||.||+
T Consensus       250 ~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~Ts~~~VyAiGD~~-~~~~~~~~A~~~g~~aa~ni~  327 (463)
T TIGR02053       250 QGEVEADELLVATGRRPNTDGLGLEKAGVKLD-ERGGILVDETLRTSNPGIYAAGDVT-GGLQLEYVAAKEGVVAAENAL  327 (463)
T ss_pred             ceEEEeCEEEEeECCCcCCCCCCccccCCEEC-CCCcEeECCCccCCCCCEEEeeecC-CCcccHhHHHHHHHHHHHHhc
Confidence            46799999999999999999778889999998 789999999 999999999999999 678899999999999999999


Q ss_pred             CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      +.....+++..+|.++|++|++|+||+||++|+++ |. ++.+....+.         +.+|.                 
T Consensus       328 ~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~-----------------  379 (463)
T TIGR02053       328 GGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKA-GI-ECDCRTLPLT---------NVPRA-----------------  379 (463)
T ss_pred             CCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhc-CC-CeEEEEEecc---------cchHH-----------------
Confidence            86344577788999999999999999999999987 53 3444432221         11110                 


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                                      .         ..+.+.
T Consensus       380 ----------------------------------------------------------------~---------~~~~~~  386 (463)
T TIGR02053       380 ----------------------------------------------------------------R---------INRDTR  386 (463)
T ss_pred             ----------------------------------------------------------------H---------hcCCCc
Confidence                                                                            0         124568


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR  329 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~  329 (332)
                      ||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..++....  .++....||.
T Consensus       387 g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~~~--~~~~~~~~~~  462 (463)
T TIGR02053       387 GFIKLVAE-PGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQTFY--RDVSKLSCCA  462 (463)
T ss_pred             EEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh--cccccccccc
Confidence            99999999 7899999999999999999999999999999999999999999999999999887522  2356677763

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=2e-37  Score=309.48  Aligned_cols=209  Identities=25%  Similarity=0.373  Sum_probs=176.1

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      .++++|.||+|+|++||+++++++++|++.  ++|+|.||+ +||++|+|||+|||+ +.+.+++.|..||++||.||+|
T Consensus       258 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~--~~G~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~G~~aa~~i~~  334 (468)
T PRK14694        258 GTLRAEQLLVATGRTPNTENLNLESIGVET--ERGAIRIDEHLQTTVSGIYAAGDCT-DQPQFVYVAAAGGSRAAINMTG  334 (468)
T ss_pred             CEEEeCEEEEccCCCCCcCCCCchhcCccc--CCCeEeeCCCcccCCCCEEEEeecC-CCcccHHHHHHHHHHHHHHhcC
Confidence            369999999999999999988778889886  478999999 999999999999999 7889999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .. ..+++..+|.++|++|++|+||+||+||++. |. ++.+....+.         ...|                   
T Consensus       335 ~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~-------------------  383 (468)
T PRK14694        335 GD-ASLDLSAMPEVIFTDPQVATVGLSEAEAQAQ-GY-DTDSRTLDLE---------NVPR-------------------  383 (468)
T ss_pred             CC-cccccCCCCeEEECCCCeEEeeCCHHHHHHc-CC-ceEEEEEecc---------cchh-------------------
Confidence            64 4577888999999999999999999999987 43 3444332221         1001                   


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                      ++       ..+.+.|
T Consensus       384 ----------------------------------------------------------------~~-------~~~~~~g  392 (468)
T PRK14694        384 ----------------------------------------------------------------AL-------VNFDTGG  392 (468)
T ss_pred             ----------------------------------------------------------------hh-------hcCCCce
Confidence                                                                            00       1245789


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR  329 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~  329 (332)
                      |+||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..+.....  .++..++||.
T Consensus       393 ~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~--~~~~~~~~~~  467 (468)
T PRK14694        393 FIKMVAE-RGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQTFT--KDVKQLSCCA  467 (468)
T ss_pred             EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHHhhh--cccchhhhhc
Confidence            9999999 7899999999999999999999999999999999999999999999999998877532  2245778874

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=3.1e-37  Score=308.58  Aligned_cols=199  Identities=24%  Similarity=0.416  Sum_probs=171.4

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      +++++++|.||+|+|++||++.|+++++|++++ ++| +.||+ +|||+|+|||+|||+ +.+++++.|.+||+++|+||
T Consensus       259 ~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~-~~G-~~vd~~~~Ts~~~IyA~GD~~-~~~~la~~A~~~g~~aa~~i  335 (466)
T PRK06115        259 AAETLQADYVLVAIGRRPYTQGLGLETVGLETD-KRG-MLANDHHRTSVPGVWVIGDVT-SGPMLAHKAEDEAVACIERI  335 (466)
T ss_pred             ceeEEEeCEEEEccCCccccccCCcccccceeC-CCC-EEECCCeecCCCCEEEeeecC-CCcccHHHHHHHHHHHHHHH
Confidence            456799999999999999999888888999997 667 77899 999999999999999 67899999999999999999


Q ss_pred             hCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccc
Q psy3825          90 YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFF  169 (332)
Q Consensus        90 ~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  169 (332)
                      +|.. ...++..+|.++|++|++|+||+||+||++. |. ++.+....|+..         .|.                
T Consensus       336 ~~~~-~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~-g~-~~~~~~~~~~~~---------~~~----------------  387 (466)
T PRK06115        336 AGKA-GEVNYGLIPGVIYTRPEVATVGKTEEQLKAE-GR-AYKVGKFPFTAN---------SRA----------------  387 (466)
T ss_pred             cCCC-CCCCCCCCCeEEECCcccEEeeCCHHHHHHC-CC-CEEEEEEecccC---------hhh----------------
Confidence            9854 3478889999999999999999999999987 43 355544322211         110                


Q ss_pred             cCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCc
Q psy3825         170 IPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQ  249 (332)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (332)
                                                                                       .+         .+.+
T Consensus       388 -----------------------------------------------------------------~~---------~~~~  393 (466)
T PRK06115        388 -----------------------------------------------------------------KI---------NHET  393 (466)
T ss_pred             -----------------------------------------------------------------Hh---------cCCC
Confidence                                                                             00         1346


Q ss_pred             ceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       250 ~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +||+||++| +++++|||+|++|++|+|+|+.+++||+.++|++||.+++++|||++|.+..++..
T Consensus       394 ~g~~klv~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~~  458 (466)
T PRK06115        394 EGFAKILAD-ARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMN  458 (466)
T ss_pred             ceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHHH
Confidence            799999999 78999999999999999999999999999999999999999999999999988864

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=4.8e-37  Score=311.52  Aligned_cols=209  Identities=29%  Similarity=0.412  Sum_probs=176.6

Q ss_pred             EEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhCC
Q psy3825          14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGN   92 (332)
Q Consensus        14 ~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G~   92 (332)
                      ++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ ||||+|||||+|||+ +.+++++.|..||++||.||+|.
T Consensus       351 ~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~-~~g~i~vd~~~~Ts~~~IyA~GD~~-~~~~~~~~A~~~g~~aa~~i~g~  428 (561)
T PRK13748        351 ELRADKLLVATGRAPNTRSLALDAAGVTVN-AQGAIVIDQGMRTSVPHIYAAGDCT-DQPQFVYVAAAAGTRAAINMTGG  428 (561)
T ss_pred             eEEeCEEEEccCCCcCCCCcCchhcCceEC-CCCCEeECCCcccCCCCEEEeeecC-CCccchhHHHHHHHHHHHHHcCC
Confidence            699999999999999999888889999998 789999999 999999999999999 77899999999999999999986


Q ss_pred             CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCC
Q psy3825          93 GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQ  172 (332)
Q Consensus        93 ~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  172 (332)
                      . ..+++..+|.++|++|++|+||+||++|++. |. ++.+....+.         +..|                    
T Consensus       429 ~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~--------------------  476 (561)
T PRK13748        429 D-AALDLTAMPAVVFTDPQVATVGYSEAEAHHD-GI-ETDSRTLTLD---------NVPR--------------------  476 (561)
T ss_pred             C-cccCCCCCCeEEEccCCceeeeCCHHHHHHc-CC-CeEEEEEecc---------cCch--------------------
Confidence            4 4577888999999999999999999999987 53 2444332211         1000                    


Q ss_pred             CCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceE
Q psy3825         173 RNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY  252 (332)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (332)
                                                                                     +++       .+.+.||
T Consensus       477 ---------------------------------------------------------------~~~-------~~~~~g~  486 (561)
T PRK13748        477 ---------------------------------------------------------------ALA-------NFDTRGF  486 (561)
T ss_pred             ---------------------------------------------------------------hhh-------cCCCCeE
Confidence                                                                           011       2356899


Q ss_pred             EEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825         253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR  329 (332)
Q Consensus       253 ~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~  329 (332)
                      +||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++...  ..+...++||.
T Consensus       487 ~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~--~~~~~~~~~~~  560 (561)
T PRK13748        487 IKLVIE-EGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTF--NKDVKQLSCCA  560 (561)
T ss_pred             EEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHHHh--hccchhhhhhc
Confidence            999999 789999999999999999999999999999999999999999999999999988642  23344567773

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=5e-37  Score=315.94  Aligned_cols=206  Identities=33%  Similarity=0.596  Sum_probs=171.2

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC-------------------
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE-------------------   70 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g-------------------   70 (332)
                      +++++++|.||+|+|++||++.|++++.++..  ++|+|.||+ ||||+|||||+|||+ +                   
T Consensus       319 ~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~--~~G~I~VDe~lqTs~p~IYA~GDv~-~~~~~~~~~~~~~~~~~~~~  395 (561)
T PTZ00058        319 GRKYEHFDYVIYCVGRSPNTEDLNLKALNIKT--PKGYIKVDDNQRTSVKHIYAVGDCC-MVKKNQEIEDLNLLKLYNEE  395 (561)
T ss_pred             CCEEEECCEEEECcCCCCCccccCccccceec--CCCeEEECcCCccCCCCEEEeEecc-Cccccccccccccccccccc
Confidence            34579999999999999999998888777754  579999999 999999999999999 5                   


Q ss_pred             ---------------CCCchhHHHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEE
Q psy3825          71 ---------------KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYH  135 (332)
Q Consensus        71 ---------------~~~la~vA~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~  135 (332)
                                     ..++++.|..||+++|+||+|......++..+|+++|++|++|+|||||+||++++|.+++.+..
T Consensus       396 p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~  475 (561)
T PTZ00058        396 PYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYE  475 (561)
T ss_pred             cccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEE
Confidence                           57899999999999999999864445678889999999999999999999999886544566543


Q ss_pred             eecCCccccccCCCccchhhhhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCc
Q psy3825         136 AYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPT  215 (332)
Q Consensus       136 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (332)
                      ..|....         |.        .+                                                    
T Consensus       476 ~~~~~~~---------~~--------~~----------------------------------------------------  486 (561)
T PTZ00058        476 SRFTNLF---------FS--------VY----------------------------------------------------  486 (561)
T ss_pred             eecchhh---------hh--------hh----------------------------------------------------
Confidence            3221100         00        00                                                    


Q ss_pred             ccccCCCCCcchhhhhhcccCCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHH
Q psy3825         216 EFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETL  295 (332)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l  295 (332)
                                         .-.|       .+.++|++||++| +++++|||+|++|++|.|+|+.+++||++|+|++||
T Consensus       487 -------------------~~~~-------~~~~~g~~Kli~~-~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl  539 (561)
T PTZ00058        487 -------------------DMDP-------AQKEKTYLKLVCV-GKEELIKGLHIVGLNADEILQGFAVALKMNATKADF  539 (561)
T ss_pred             -------------------cccc-------cCCCCeEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHH
Confidence                               0001       1346799999999 789999999999999999999999999999999999


Q ss_pred             hcccccCCCchHHHHHHHhh
Q psy3825         296 ESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       296 ~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      .+++++|||++|.+..++..
T Consensus       540 ~~~~~~hPt~~e~~~~~~~~  559 (561)
T PTZ00058        540 DETIPIHPTAAEEFVTMAPW  559 (561)
T ss_pred             hhcccCCCChHHHHHHhccC
Confidence            99999999999999887653

>KOG0405|consensus

Probab=100.00  E-value=4.2e-37  Score=299.39  Aligned_cols=199  Identities=41%  Similarity=0.693  Sum_probs=179.3

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      .++.-.+|.+|||+||.||+..|+|++.|++++ ++|.|+||+ .+||+|+|||+||++ ++..|+++|+.+|+.+++.+
T Consensus       270 ~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~-~~g~IivDeYq~Tnvp~I~avGDv~-gk~~LTPVAiaagr~la~rl  347 (478)
T KOG0405|consen  270 HGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTD-KNGAIIVDEYQNTNVPSIWAVGDVT-GKINLTPVAIAAGRKLANRL  347 (478)
T ss_pred             ccccccccEEEEEecCCCCcccccchhcceeeC-CCCCEEEeccccCCCCceEEecccc-CcEecchHHHhhhhhHHHHh
Confidence            343344999999999999999999999999999 899999999 999999999999999 88999999999999999999


Q ss_pred             hC-CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccc
Q psy3825          90 YG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEF  168 (332)
Q Consensus        90 ~G-~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  168 (332)
                      +| .+....+|.++|.++|+.|+++.|||||+||-++||.+++.++...|.|+.+.+.                      
T Consensus       348 F~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~----------------------  405 (478)
T KOG0405|consen  348 FGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMS----------------------  405 (478)
T ss_pred             hcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHhh----------------------
Confidence            98 5566789999999999999999999999999999998899998766554432221                      


Q ss_pred             ccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCC
Q psy3825         169 FIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP  248 (332)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (332)
                                                                                                   ...
T Consensus       406 -----------------------------------------------------------------------------~~k  408 (478)
T KOG0405|consen  406 -----------------------------------------------------------------------------GRK  408 (478)
T ss_pred             -----------------------------------------------------------------------------cCC
Confidence                                                                                         124


Q ss_pred             cceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHH
Q psy3825         249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR  311 (332)
Q Consensus       249 ~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~  311 (332)
                      .+.++||||. .++.|++|+|++|..+.|++|+++.|+++|.|-.|+.+++.+|||-+|+|-.
T Consensus       409 ~kt~mKlvc~-~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEElVT  470 (478)
T KOG0405|consen  409 EKTLMKLVCA-GKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEELVT  470 (478)
T ss_pred             cceEEEEEEe-cCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHHhee
Confidence            6799999999 8899999999999999999999999999999999999999999999999854

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.8e-36  Score=299.49  Aligned_cols=197  Identities=27%  Similarity=0.447  Sum_probs=169.2

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      .++++|.||+|+|++||++.|++++.|++++ ++| |.||+ +||++|||||+|||+ +.+++++.|..||++||.|+.|
T Consensus       253 ~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~-~~g-i~Vd~~~~ts~~~VyA~GD~~-~~~~la~~A~~~g~~aa~~~~g  329 (458)
T PRK06912        253 QEVNAEFVLVSVGRKPRVQQLNLEKAGVQFS-NKG-ISVNEHMQTNVPHIYACGDVI-GGIQLAHVAFHEGTTAALHASG  329 (458)
T ss_pred             EEEEeCEEEEecCCccCCCCCCchhcCceec-CCC-EEeCCCeecCCCCEEEEeecC-CCcccHHHHHHHHHHHHHHHcC
Confidence            4799999999999999999888888999987 666 99999 999999999999999 7789999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .. ..+++..+|+++|++|++|+||+||+||++. |. ++.+....|.+.         .|.                  
T Consensus       330 ~~-~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~~~---------~~~------------------  379 (458)
T PRK06912        330 ED-VKVNYHAVPRCIYTSPEIASVGLTEKQAREQ-YG-DIRIGEFPFTAN---------GKA------------------  379 (458)
T ss_pred             CC-CCCCcCCCCeEEecCchhEEeeCCHHHHHHC-CC-CeEEEEEecCcc---------hhH------------------
Confidence            54 3466788999999999999999999999987 43 355543222110         010                  


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                     .         ..+.+.|
T Consensus       380 ---------------------------------------------------------------~---------~~~~~~g  387 (458)
T PRK06912        380 ---------------------------------------------------------------L---------IIGEQTG  387 (458)
T ss_pred             ---------------------------------------------------------------h---------hcCCCce
Confidence                                                                           0         1245789


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      |+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus       388 ~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  450 (458)
T PRK06912        388 KVKVIVE-PKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQ  450 (458)
T ss_pred             EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHHH
Confidence            9999999 78999999999999999999999999999999999999999999999999988763

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.6e-36  Score=299.89  Aligned_cols=198  Identities=27%  Similarity=0.458  Sum_probs=170.2

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||+++|.++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||+.||.||.|
T Consensus       269 ~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~-~~G~i~vd~~~~Ts~~~VyA~GD~~-~~~~~~~~A~~~G~~aa~~i~g  346 (475)
T PRK06327        269 QTLEVDKLIVSIGRVPNTDGLGLEAVGLKLD-ERGFIPVDDHCRTNVPNVYAIGDVV-RGPMLAHKAEEEGVAVAERIAG  346 (475)
T ss_pred             eEEEcCEEEEccCCccCCCCCCcHhhCceeC-CCCeEeECCCCccCCCCEEEEEecc-CCcchHHHHHHHHHHHHHHHcC
Confidence            5799999999999999999877788999998 789999999 999999999999998 6788999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .. ..+++..+|+++|++|++|+||+||++|++. |. ++.+....|.         ...|.                  
T Consensus       347 ~~-~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~-g~-~~~~~~~~~~---------~~~~~------------------  396 (475)
T PRK06327        347 QK-GHIDYNTIPWVIYTSPEIAWVGKTEQQLKAE-GV-EYKAGKFPFM---------ANGRA------------------  396 (475)
T ss_pred             CC-CCCCCCCCCeEEeCCcceEEEeCCHHHHHHc-CC-CEEEEEEccc---------ccchh------------------
Confidence            54 3467888999999999999999999999987 43 2444322211         11110                  


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                     .         ..+.+.|
T Consensus       397 ---------------------------------------------------------------~---------~~~~~~g  404 (475)
T PRK06327        397 ---------------------------------------------------------------L---------AMGEPDG  404 (475)
T ss_pred             ---------------------------------------------------------------h---------hcCCCCe
Confidence                                                                           0         0145679


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      |+||++| +++++|||+|++|++|.|+||.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus       405 ~~klv~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  467 (475)
T PRK06327        405 FVKIIAD-AKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALA  467 (475)
T ss_pred             EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHHH
Confidence            9999999 78999999999999999999999999999999999999999999999999988763

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.2e-35  Score=294.87  Aligned_cols=197  Identities=30%  Similarity=0.470  Sum_probs=170.7

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||++++++++.|++++  +|+|.||+ +||++|+|||+|||+ +.+++++.|..||+++|.||+|
T Consensus       257 ~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~--~g~i~vd~~~~t~~~~VyAiGD~~-~~~~~~~~A~~~g~~aa~ni~~  333 (462)
T PRK06416        257 ETLEADYVLVAVGRRPNTENLGLEELGVKTD--RGFIEVDEQLRTNVPNIYAIGDIV-GGPMLAHKASAEGIIAAEAIAG  333 (462)
T ss_pred             EEEEeCEEEEeeCCccCCCCCCchhcCCeec--CCEEeECCCCccCCCCEEEeeecC-CCcchHHHHHHHHHHHHHHHcC
Confidence            6799999999999999999988889999986  78999999 999999999999998 6788999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .. ..+++..+|.++|++|++++||+||+||++. |. ++.+.+..+..         ..|.                  
T Consensus       334 ~~-~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~-g~-~~~~~~~~~~~---------~~~~------------------  383 (462)
T PRK06416        334 NP-HPIDYRGIPAVTYTHPEVASVGLTEAKAKEE-GF-DVKVVKFPFAG---------NGKA------------------  383 (462)
T ss_pred             CC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhc-CC-CeEEEEEecCc---------ChHh------------------
Confidence            54 4567888999999999999999999999997 53 35554432221         1110                  


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                     .         ..+.++|
T Consensus       384 ---------------------------------------------------------------~---------~~~~~~g  391 (462)
T PRK06416        384 ---------------------------------------------------------------L---------ALGETDG  391 (462)
T ss_pred             ---------------------------------------------------------------H---------hcCCCce
Confidence                                                                           0         0145789


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ++||++| +++++|||+|++|++|.|+|+.+++||+.|+|++||.+++++|||++|.+..++..
T Consensus       392 ~~kli~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  454 (462)
T PRK06416        392 FVKLIFD-KKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALA  454 (462)
T ss_pred             EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHH
Confidence            9999999 78999999999999999999999999999999999999999999999999988763

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=1.7e-35  Score=292.27  Aligned_cols=199  Identities=29%  Similarity=0.429  Sum_probs=169.0

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      +++++++|.||+|+|++||++.+++++.++.++ ++|+|.||+ +||++|||||+|||+ +.+++++.|..+|++++.++
T Consensus       236 ~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~-~~g~i~vd~~~~t~~~~IyaiGD~~-~~~~~~~~a~~~~~~~~~~~  313 (438)
T PRK07251        236 EDETYRFDALLYATGRKPNTEPLGLENTDIELT-ERGAIKVDDYCQTSVPGVFAVGDVN-GGPQFTYISLDDFRIVFGYL  313 (438)
T ss_pred             CCeEEEcCEEEEeeCCCCCcccCCchhcCcEEC-CCCcEEECCCcccCCCCEEEeeecC-CCcccHhHHHHHHHHHHHHH
Confidence            456799999999999999999988888899887 789999999 999999999999999 78899999999999999999


Q ss_pred             hCCCC-cccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccc
Q psy3825          90 YGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEF  168 (332)
Q Consensus        90 ~G~~~-~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  168 (332)
                      +|... ...++..+|+++|++|++|+||+||+||++. |. ++.+....+         ...+|.               
T Consensus       314 ~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~-g~-~~~~~~~~~---------~~~~~~---------------  367 (438)
T PRK07251        314 TGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEA-GL-PYAVKELLV---------AAMPRA---------------  367 (438)
T ss_pred             cCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhc-CC-CeEEEEEEC---------Ccchhh---------------
Confidence            97543 2345678999999999999999999999987 43 244433211         110110               


Q ss_pred             ccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCC
Q psy3825         169 FIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP  248 (332)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (332)
                                                                                        .         ..+.
T Consensus       368 ------------------------------------------------------------------~---------~~~~  372 (438)
T PRK07251        368 ------------------------------------------------------------------H---------VNND  372 (438)
T ss_pred             ------------------------------------------------------------------h---------hcCC
Confidence                                                                              0         1245


Q ss_pred             cceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825         249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT  313 (332)
Q Consensus       249 ~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  313 (332)
                      .+|++||++| +++++|||+|++|++|+|+|+.+++||++|+|+++|.+++++|||++|.+.++.
T Consensus       373 ~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  436 (438)
T PRK07251        373 LRGAFKVVVN-TETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF  436 (438)
T ss_pred             CcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence            6899999999 789999999999999999999999999999999999999999999999998764

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.8e-35  Score=291.69  Aligned_cols=198  Identities=28%  Similarity=0.482  Sum_probs=170.1

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||++.|+++..++..+  +|+|.||+ +||+.|+|||+|||+ +.+++++.|..||++||+||.|
T Consensus       266 ~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~--~g~i~Vd~~l~ts~~~IyAiGD~~-~~~~~~~~A~~~g~~aa~~i~g  342 (472)
T PRK05976        266 KTLEADKVLVSVGRRPNTEGIGLENTDIDVE--GGFIQIDDFCQTKERHIYAIGDVI-GEPQLAHVAMAEGEMAAEHIAG  342 (472)
T ss_pred             EEEEeCEEEEeeCCccCCCCCCchhcCceec--CCEEEECCCcccCCCCEEEeeecC-CCcccHHHHHHHHHHHHHHHcC
Confidence            5799999999999999999877788888764  68999999 999999999999999 6788999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .....+++..+|.++|++|++|+||+||+||++. |. ++.+.+..|+.         ..|.                  
T Consensus       343 ~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~-g~-~~~~~~~~~~~---------~~~~------------------  393 (472)
T PRK05976        343 KKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEA-GY-DVKVGKFPFAA---------NGKA------------------  393 (472)
T ss_pred             CCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHc-CC-CEEEEEEECCc---------chhh------------------
Confidence            6545677888999999999999999999999987 43 35544332211         1110                  


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                     .         ..+.++|
T Consensus       394 ---------------------------------------------------------------~---------~~~~~~g  401 (472)
T PRK05976        394 ---------------------------------------------------------------L---------TYGESDG  401 (472)
T ss_pred             ---------------------------------------------------------------h---------hcCCCce
Confidence                                                                           0         1245789


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      |+||++| +++++|||+|++|++|+|+|+.+++||+.++|++||.+++++|||++|.+..++..
T Consensus       402 ~~kli~d-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  464 (472)
T PRK05976        402 FVKVVAD-RDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALA  464 (472)
T ss_pred             EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHH
Confidence            9999999 78999999999999999999999999999999999999999999999999988863

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=5.1e-34  Score=282.35  Aligned_cols=199  Identities=32%  Similarity=0.517  Sum_probs=171.3

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.|++|+|++||++.|.+++.|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||+.+|+||.+
T Consensus       254 ~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~-~~g~i~vd~~l~t~~~~IyaiGD~~-~~~~~~~~A~~~g~~aa~~i~~  331 (461)
T TIGR01350       254 ETLTGEKVLVAVGRKPNTEGLGLENLGVELD-ERGRIVVDEYMRTNVPGIYAIGDVI-GGPMLAHVASHEGIVAAENIAG  331 (461)
T ss_pred             EEEEeCEEEEecCCcccCCCCCcHhhCceEC-CCCcEeeCCCcccCCCCEEEeeecC-CCcccHHHHHHHHHHHHHHHcC
Confidence            5799999999999999999766788999998 789999999 999999999999999 6788999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .....+++..+|.++|++|++++||++|++|++. |. ++.+....|+         +..|.                  
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~-g~-~~~~~~~~~~---------~~~~~------------------  382 (461)
T TIGR01350       332 KEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEA-GY-DVKIGKFPFA---------ANGKA------------------  382 (461)
T ss_pred             CCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhC-CC-CeEEEEEeCc---------cchHH------------------
Confidence            6543677888999999999999999999999987 43 3554433221         11110                  


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                     .         ..+.+.|
T Consensus       383 ---------------------------------------------------------------~---------~~~~~~g  390 (461)
T TIGR01350       383 ---------------------------------------------------------------L---------ALGETDG  390 (461)
T ss_pred             ---------------------------------------------------------------H---------hcCCCce
Confidence                                                                           0         0245789


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ++||++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++..
T Consensus       391 ~~kl~~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~  453 (461)
T TIGR01350       391 FVKIIAD-KKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALA  453 (461)
T ss_pred             EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHHH
Confidence            9999999 78999999999999999999999999999999999999999999999999888763

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=5.7e-34  Score=282.77  Aligned_cols=200  Identities=20%  Similarity=0.338  Sum_probs=163.8

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCchh
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELTP   76 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la~   76 (332)
                      +.+++++++++|.|++|+|++||+++  +++.|++++ ++|+|.||+ |||++|||||+|||+..         ..++++
T Consensus       220 v~~~~g~~~~~D~vl~a~G~~pn~~~--l~~~gl~~~-~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~  296 (438)
T PRK13512        220 VTFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLD-DKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAW  296 (438)
T ss_pred             EEECCCCEEEeCEEEECcCCCcChHH--HHhcCcccC-CCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccch
Confidence            44456678999999999999999997  678899998 789999999 99999999999999831         246889


Q ss_pred             HHHHHHHHHHHHHhCCCCccc-ccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhh
Q psy3825          77 VAVQAGKLLAARLYGNGTTQM-DYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYL  155 (332)
Q Consensus        77 vA~~qG~vAA~nI~G~~~~~~-~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  155 (332)
                      .|.+||+++|+||.|.....+ ++..+|+++|++|++|+||+||+||++. +   +++....         .++      
T Consensus       297 ~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~-~---~~~~~~~---------~~~------  357 (438)
T PRK13512        297 GAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF-D---YKMVEVT---------QGA------  357 (438)
T ss_pred             HHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC-C---cEEEEEe---------cCC------
Confidence            999999999999998543223 5678999999999999999999999864 2   4433211         111      


Q ss_pred             hhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhccc
Q psy3825         156 KFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAY  235 (332)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (332)
                          ++                                                                         .
T Consensus       358 ----~~-------------------------------------------------------------------------~  360 (438)
T PRK13512        358 ----HA-------------------------------------------------------------------------N  360 (438)
T ss_pred             ----cC-------------------------------------------------------------------------C
Confidence                00                                                                         0


Q ss_pred             CCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHH
Q psy3825         236 YKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVT  313 (332)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~  313 (332)
                      +        ..+.+.||+||++| +++++|||+|++|++ |.|+|+.+++||++|+|++||.++ +++||+++..++.+.
T Consensus       361 ~--------~~~~~~g~~klv~d-~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~  431 (438)
T PRK13512        361 Y--------YPGNSPLHLRVYYD-TSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLIN  431 (438)
T ss_pred             C--------cCCCceEEEEEEEE-CCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCccccHHH
Confidence            0        01457899999999 789999999999997 899999999999999999999996 999999998776654


Q ss_pred             h
Q psy3825         314 I  314 (332)
Q Consensus       314 ~  314 (332)
                      .
T Consensus       432 ~  432 (438)
T PRK13512        432 M  432 (438)
T ss_pred             H
Confidence            4

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=3.3e-32  Score=267.86  Aligned_cols=197  Identities=26%  Similarity=0.344  Sum_probs=159.0

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCchhHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELTPVAVQA   81 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la~vA~~q   81 (332)
                      +.++++|.|++|+|++||+++  ++++|++++ ++|+|.||+ +||++|||||+|||+..         .+++++.|.+|
T Consensus       230 ~~~i~~d~vi~a~G~~p~~~~--l~~~gl~~~-~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~q  306 (444)
T PRK09564        230 KGEYEADVVIVATGVKPNTEF--LEDTGLKTL-KNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKL  306 (444)
T ss_pred             CCEEEcCEEEECcCCCcCHHH--HHhcCcccc-CCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHH
Confidence            347999999999999999987  688899987 789999999 99999999999999841         14688999999


Q ss_pred             HHHHHHHHhCCCCcccccccc-eEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhcc
Q psy3825          82 GKLLAARLYGNGTTQMDYQNV-ATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYH  160 (332)
Q Consensus        82 G~vAA~nI~G~~~~~~~y~~v-P~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  160 (332)
                      |+++|+||.|... .++.... +.+.|++|++++||+||+||++. |. ++.+....         ..+ .|        
T Consensus       307 g~~~a~ni~g~~~-~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~-g~-~~~~~~~~---------~~~-~~--------  365 (444)
T PRK09564        307 GRMVGENLAGRHV-SFKGTLGSACIKVLDLEAARTGLTEEEAKKL-GI-DYKTVFIK---------DKN-HT--------  365 (444)
T ss_pred             HHHHHHHhcCCCC-CCCCcccceEEEECCEEEEEecCCHHHHHHC-CC-CeEEEEEe---------cCC-CC--------
Confidence            9999999998643 3333333 45669999999999999999987 53 24443211         011 00        


Q ss_pred             ccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcc
Q psy3825         161 AYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTE  240 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (332)
                                                                                               ++     
T Consensus       366 -------------------------------------------------------------------------~~-----  367 (444)
T PRK09564        366 -------------------------------------------------------------------------NY-----  367 (444)
T ss_pred             -------------------------------------------------------------------------Cc-----
Confidence                                                                                     00     


Q ss_pred             cccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcccccC-CCchHHHHHHHhh
Q psy3825         241 FFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLESTVGIH-PTLAEEFTRVTIT  315 (332)
Q Consensus       241 ~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~~~~~-Pt~~e~~~~~~~~  315 (332)
                          ..+...||+||++| +++++|||+|++|++ +.|+|+.+++||++|+|+++|.++.+.| |+++|.++.+...
T Consensus       368 ----~~~~~~~~~klv~~-~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  439 (444)
T PRK09564        368 ----YPGQEDLYVKLIYE-ADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTWDALNVA  439 (444)
T ss_pred             ----CCCCceEEEEEEEE-CCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCcCHHHHH
Confidence                12457899999999 789999999999996 8999999999999999999999987666 9999999876553

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.98  E-value=1.8e-31  Score=262.22  Aligned_cols=199  Identities=25%  Similarity=0.324  Sum_probs=160.7

Q ss_pred             ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCchhH
Q psy3825           8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELTPV   77 (332)
Q Consensus         8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la~v   77 (332)
                      ...+++++++|.|++|+|++||+++  ++++|++++ ++|+|.||+ +||+.|+|||+|||+..         ..++++.
T Consensus       213 ~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~  289 (427)
T TIGR03385       213 VFTSGGVYQADMVILATGIKPNSEL--AKDSGLKLG-ETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWG  289 (427)
T ss_pred             EEcCCCEEEeCEEEECCCccCCHHH--HHhcCcccC-CCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHH
Confidence            3455678999999999999999987  678899998 789999999 99999999999999841         1357899


Q ss_pred             HHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhh
Q psy3825          78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKF  157 (332)
Q Consensus        78 A~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  157 (332)
                      |.+||++||+||.|..........+|+++|++|++++||+||++|++. |.+ +.+....         ..+        
T Consensus       290 A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~-g~~-~~~~~~~---------~~~--------  350 (427)
T TIGR03385       290 ANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKL-NID-YKTVFVK---------AKT--------  350 (427)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHC-CCC-eEEEEEe---------cCC--------
Confidence            999999999999986432223446889999999999999999999986 532 4432211         111        


Q ss_pred             hccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCC
Q psy3825         158 IYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYK  237 (332)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (332)
                        ++                                                                         .+ 
T Consensus       351 --~~-------------------------------------------------------------------------~~-  354 (427)
T TIGR03385       351 --HA-------------------------------------------------------------------------NY-  354 (427)
T ss_pred             --CC-------------------------------------------------------------------------Cc-
Confidence              00                                                                         00 


Q ss_pred             CcccccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHH
Q psy3825         238 PTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRV  312 (332)
Q Consensus       238 ~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~  312 (332)
                             ..+.+.|++||++| +++++|||+|++|++ |+|+|+.+++||++|+|++||.++ ...||.++..++.+
T Consensus       355 -------~~~~~~g~~kli~~-~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~~~~  423 (427)
T TIGR03385       355 -------YPGNSPLHLKLIYE-KDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVWDPL  423 (427)
T ss_pred             -------CCCCceEEEEEEEE-CCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCccchH
Confidence                   01457899999999 789999999999999 999999999999999999999998 56889998766443

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=99.90  E-value=2.6e-23  Score=170.60  Aligned_cols=66  Identities=30%  Similarity=0.572  Sum_probs=62.7

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT  313 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  313 (332)
                      +.+.|++||++| +++|+|||+|++|++|+|+|+.+++||++|+|+++|.+++++|||++|.+.+++
T Consensus        45 ~~~~g~~Kli~d-~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~  110 (110)
T PF02852_consen   45 PETEGFVKLIFD-KKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA  110 (110)
T ss_dssp             TTTEEEEEEEEE-TTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred             CCcceeeEEEEE-eeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence            348899999999 789999999999999999999999999999999999999999999999999874

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.82  E-value=7.2e-20  Score=196.85  Aligned_cols=180  Identities=18%  Similarity=0.315  Sum_probs=136.9

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---CCCchhHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---KPELTPVAVQAG   82 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---~~~la~vA~~qG   82 (332)
                      +.+++++++++|.||+|+|++||+++  ++++|++++ ++|+|.||+ ||||+|+|||+|||+..   ...+++.|..||
T Consensus       224 v~~~dG~~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~-~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a  300 (847)
T PRK14989        224 MRFADGSELEVDFIVFSTGIRPQDKL--ATQCGLAVA-PRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMA  300 (847)
T ss_pred             EEECCCCEEEcCEEEECCCcccCchH--HhhcCccCC-CCCcEEECCCCcCCCCCEEEeecceeEcCcccccHHHHHHHH
Confidence            45667889999999999999999986  678899998 789999999 99999999999999952   124789999999


Q ss_pred             HHHHHHHhCCCCcccccccce-EEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccc
Q psy3825          83 KLLAARLYGNGTTQMDYQNVA-TTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA  161 (332)
Q Consensus        83 ~vAA~nI~G~~~~~~~y~~vP-~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  161 (332)
                      ++||+||+|.. ..++...++ ...+.+.+++++|.    +.   +.+                +. .  +        +
T Consensus       301 ~vaa~~i~g~~-~~~~g~~~~~~lk~~G~~v~s~G~----~~---~~~----------------~~-~--~--------~  345 (847)
T PRK14989        301 QVAVDHLLGSE-NAFEGADLSAKLKLLGVDVGGIGD----AH---GRT----------------PG-A--R--------S  345 (847)
T ss_pred             HHHHHHhcCCC-cCCCCcccceEEEECCcceEeccc----cc---CCC----------------CC-c--e--------e
Confidence            99999999865 334444455 44566778888872    11   100                00 0  0        0


Q ss_pred             cCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccc
Q psy3825         162 YYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF  241 (332)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (332)
                      .                                                                       .|      
T Consensus       346 ~-----------------------------------------------------------------------~~------  348 (847)
T PRK14989        346 Y-----------------------------------------------------------------------VY------  348 (847)
T ss_pred             E-----------------------------------------------------------------------EE------
Confidence            0                                                                       00      


Q ss_pred             ccccCCCcceEEEEEEecCCCCcEEEEEEeCccH--HHHHHHHHHHHHCCCCHHHHhccccc---CCCc
Q psy3825         242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNA--GEVIQGYAAAVKCGLTFETLESTVGI---HPTL  305 (332)
Q Consensus       242 ~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a--~e~i~~~~~ai~~~~t~~~l~~~~~~---~Pt~  305 (332)
                         ......+|.||+++ +++++|||++++|+.+  .++++.+...+..+.+.++|....+.   ||++
T Consensus       349 ---~~~~~~~y~Klv~~-~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~  413 (847)
T PRK14989        349 ---LDESKEIYKRLIVS-EDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSI  413 (847)
T ss_pred             ---EcCCCCEEEEEEEE-CCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCCCCCCCCcc
Confidence               01235799999999 7899999999999954  89999998888888888888776543   7877

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.56  E-value=3.2e-14  Score=152.11  Aligned_cols=109  Identities=22%  Similarity=0.252  Sum_probs=85.0

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---CCCchhHHHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---KPELTPVAVQA   81 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---~~~la~vA~~q   81 (332)
                      ++.+++++++++|.|++|+|++||+++  ++++|++++   |.|.||+ ||||.|+|||+|||+..   ...++..|..|
T Consensus       216 ~v~~~dG~~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~---ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~q  290 (785)
T TIGR02374       216 RIRFKDGSSLEADLIVMAAGIRPNDEL--AVSAGIKVN---RGIIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQ  290 (785)
T ss_pred             EEEECCCCEEEcCEEEECCCCCcCcHH--HHhcCCccC---CCEEECCCcccCCCCEEEeeecceeCCcccccHHHHHHH
Confidence            355677889999999999999999986  567788774   4599999 99999999999999852   12467789999


Q ss_pred             HHHHHHHHhCCCCcccccccc-eEEEEcCceeEEEcCCH
Q psy3825          82 GKLLAARLYGNGTTQMDYQNV-ATTVFTPLEYGCVGLSE  119 (332)
Q Consensus        82 G~vAA~nI~G~~~~~~~y~~v-P~~vftdPe~AsVGLTE  119 (332)
                      |+++|.||.|.....+..... ....+.+.+++++|...
T Consensus       291 a~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~  329 (785)
T TIGR02374       291 AKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQ  329 (785)
T ss_pred             HHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCC
Confidence            999999999865233332222 24457788999999754

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.55  E-value=6.2e-14  Score=136.27  Aligned_cols=107  Identities=24%  Similarity=0.284  Sum_probs=83.3

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC--C-CCchhHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE--K-PELTPVAVQAG   82 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g--~-~~la~vA~~qG   82 (332)
                      +.+++++++++|.|++|+|.+||+++  +++.|++.+  +| |.||+ |||+.|||||+|||+..  . ...+..|..||
T Consensus       218 v~~~~g~~i~~D~vI~a~G~~p~~~l--~~~~gl~~~--~g-i~vd~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g  292 (377)
T PRK04965        218 ATLDSGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVN--RG-IVVDSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSA  292 (377)
T ss_pred             EEEcCCcEEECCEEEECcCCCcchHH--HHHCCCCcC--CC-EEECCCcccCCCCEEEeeecEeECCceeehHHHHHHHH
Confidence            45567788999999999999999986  567788875  56 99999 99999999999999851  1 13466789999


Q ss_pred             HHHHHHHhCCCCccccccc-ceEEEEcCceeEEEcCCH
Q psy3825          83 KLLAARLYGNGTTQMDYQN-VATTVFTPLEYGCVGLSE  119 (332)
Q Consensus        83 ~vAA~nI~G~~~~~~~y~~-vP~~vftdPe~AsVGLTE  119 (332)
                      +++|.||.|.... +.... .+...+.+.+++++|-..
T Consensus       293 ~~~a~n~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~  329 (377)
T PRK04965        293 MALAKNLLGQNTP-LKLPAMLVKVKTPELPLQLAGETQ  329 (377)
T ss_pred             HHHHHHhcCCCcc-cccCCccEEEecCceeeEECCCCC
Confidence            9999999986543 33322 345557778888888643

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.51  E-value=3.5e-13  Score=132.16  Aligned_cols=107  Identities=21%  Similarity=0.097  Sum_probs=82.2

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC-----C---CCCchhH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH-----E---KPELTPV   77 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~-----g---~~~la~v   77 (332)
                      +.+.+++++++|.|++++|++||+++  ++++|++.+  + +|.||+ |||++|+|||+|||+.     +   ...+++.
T Consensus       220 v~l~~g~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~-gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~  294 (396)
T PRK09754        220 LTLQSGETLQADVVIYGIGISANDQL--AREANLDTA--N-GIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWEN  294 (396)
T ss_pred             EEECCCCEEECCEEEECCCCChhhHH--HHhcCCCcC--C-CEEECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHH
Confidence            34566778999999999999999986  466787653  4 499999 9999999999999984     1   1245689


Q ss_pred             HHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCH
Q psy3825          78 AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSE  119 (332)
Q Consensus        78 A~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTE  119 (332)
                      |..||++||+||+|... ........+....+..+.++|.+.
T Consensus       295 A~~qg~~aa~ni~g~~~-~~~~~p~~~~~~~~~~~~~~G~~~  335 (396)
T PRK09754        295 ANNQAQIAAAAMLGLPL-PLLPPPWFWSDQYSDNLQFIGDMR  335 (396)
T ss_pred             HHHHHHHHHHHhcCCCC-CCCCCCceEEEeCCccEEEeeCCC
Confidence            99999999999998642 223223345566678899998643

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.35  E-value=3.1e-12  Score=134.87  Aligned_cols=86  Identities=29%  Similarity=0.372  Sum_probs=76.1

Q ss_pred             ceeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC---CCCCchhHHHH
Q psy3825           5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH---EKPELTPVAVQ   80 (332)
Q Consensus         5 ~~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~---g~~~la~vA~~   80 (332)
                      +++++++|+.+++|.|+||+|.+||++.  ...+|+..+  +| |.||+ ||||+|+|||+|+|+.   ....++.-+..
T Consensus       220 ~~vr~~DG~~i~ad~VV~a~GIrPn~el--a~~aGlavn--rG-Ivvnd~mqTsdpdIYAvGEcae~~g~~yGLVaP~ye  294 (793)
T COG1251         220 EGVRFADGTEIPADLVVMAVGIRPNDEL--AKEAGLAVN--RG-IVVNDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYE  294 (793)
T ss_pred             eeEeecCCCcccceeEEEecccccccHh--HHhcCcCcC--CC-eeecccccccCCCeeehhhHHHhcCccceehhHHHH
Confidence            5688999999999999999999999997  577899997  55 99999 9999999999999986   23578889999


Q ss_pred             HHHHHHHHHhCCCCc
Q psy3825          81 AGKLLAARLYGNGTT   95 (332)
Q Consensus        81 qG~vAA~nI~G~~~~   95 (332)
                      ||+++|+|+.|....
T Consensus       295 q~~v~a~hl~~~~~~  309 (793)
T COG1251         295 QAKVLADHLCGGEAE  309 (793)
T ss_pred             HHHHHHHHhccCccc
Confidence            999999999987543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.32  E-value=3.2e-12  Score=128.29  Aligned_cols=75  Identities=28%  Similarity=0.326  Sum_probs=68.2

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      .+++++|.||+|+|++||+.+  +++.|++++ ++|+|.||+ +|||+|+|||+|||+ .++.++..|+.+|+.||.+|.
T Consensus       371 ~~~i~~D~Vi~AiG~~p~~~~--l~~~gl~~~-~~G~i~vd~~~~Ts~~~VfA~GD~~-~g~~~v~~Ai~~G~~AA~~I~  446 (449)
T TIGR01316       371 ECKLEADAVIVAIGNGSNPIM--AETTRLKTS-ERGTIVVDEDQRTSIPGVFAGGDII-LGAATVIRAMGQGKRAAKSIN  446 (449)
T ss_pred             eEEEECCEEEECCCCCCCchh--hhccCcccC-CCCeEEeCCCCccCCCCEEEecCCC-CCcHHHHHHHHHHHHHHHHHH
Confidence            357999999999999999976  677889998 789999999 999999999999998 677889999999999999985

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.30  E-value=1.1e-11  Score=123.16  Aligned_cols=82  Identities=26%  Similarity=0.284  Sum_probs=70.0

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CC-CCCCcEEEecccCCC----CCCchhHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQ-TNIPNVFAVGDVLHE----KPELTPVAV   79 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lq-TSvpgIYAiGDva~g----~~~la~vA~   79 (332)
                      .+.+++|+++++|.++|++|.+||. +  ++++|++++ ++|+|.||+ || |+.|||||+|||+..    .++.+..|.
T Consensus       258 ~v~~~~g~~i~~d~vi~~~G~~~~~-~--~~~~~l~~~-~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~  333 (424)
T PTZ00318        258 EVVLKDGEVIPTGLVVWSTGVGPGP-L--TKQLKVDKT-SRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVAS  333 (424)
T ss_pred             EEEECCCCEEEccEEEEccCCCCcc-h--hhhcCCccc-CCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHH
Confidence            4566778899999999999999984 4  566788887 789999999 99 599999999999951    356788999


Q ss_pred             HHHHHHHHHHhC
Q psy3825          80 QAGKLLAARLYG   91 (332)
Q Consensus        80 ~qG~vAA~nI~G   91 (332)
                      +||+++|+||.+
T Consensus       334 ~qg~~~A~ni~~  345 (424)
T PTZ00318        334 QQGVYLAKEFNN  345 (424)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999974

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.25  E-value=8.9e-12  Score=114.63  Aligned_cols=77  Identities=29%  Similarity=0.296  Sum_probs=66.7

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      ++++++++|.|++++|++||.+++  +.. ++++ ++|+|.||+ ++|++|+|||+|||+...++.+..|+.||+.||.+
T Consensus       220 g~~~~i~~D~vi~a~G~~~~~~~l--~~~-~~~~-~~g~i~v~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~  295 (300)
T TIGR01292       220 GEEEELKVDGVFIAIGHEPNTELL--KGL-LELD-EGGYIVTDEGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALS  295 (300)
T ss_pred             CceEEEEccEEEEeeCCCCChHHH--HHh-heec-CCCcEEECCCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHH
Confidence            445789999999999999999874  445 6777 689999999 99999999999999832577899999999999999


Q ss_pred             Hh
Q psy3825          89 LY   90 (332)
Q Consensus        89 I~   90 (332)
                      |.
T Consensus       296 i~  297 (300)
T TIGR01292       296 AE  297 (300)
T ss_pred             HH
Confidence            85

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.20  E-value=3.7e-11  Score=116.24  Aligned_cols=79  Identities=27%  Similarity=0.308  Sum_probs=68.4

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      ++++++++|.|++++|++|++.+. .+.+|++++ ++|+|.||+ ++|+.|+|||+|||+ +.+.++..|+.+|+.||.+
T Consensus       268 ~~~~~i~~D~vi~a~G~~p~~~l~-~~~~g~~~~-~~g~i~vd~~~~t~~~~vyaiGD~~-~~~~~~~~A~~~g~~aa~~  344 (352)
T PRK12770        268 GSEFVLEADTVVFAIGEIPTPPFA-KECLGIELN-RKGEIVVDEKHMTSREGVFAAGDVV-TGPSKIGKAIKSGLRAAQS  344 (352)
T ss_pred             CCeEEEECCEEEECcccCCCchhh-hcccCceec-CCCcEeeCCCcccCCCCEEEEcccc-cCcchHHHHHHHHHHHHHH
Confidence            455689999999999999998752 222788888 778999999 999999999999998 5678899999999999999


Q ss_pred             HhC
Q psy3825          89 LYG   91 (332)
Q Consensus        89 I~G   91 (332)
                      |..
T Consensus       345 i~~  347 (352)
T PRK12770        345 IHE  347 (352)
T ss_pred             HHH
Confidence            863

>PRK12831 putative oxidoreductase; Provisional

Probab=99.19  E-value=4.2e-11  Score=121.06  Aligned_cols=75  Identities=29%  Similarity=0.311  Sum_probs=66.5

Q ss_pred             eeEEEcCEEEEccCccccCccccccc-cCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSN-AGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~-aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      ..++++|.||+|+|+.|++.+  +.+ .|++++ ++|.|.||+  ++||+|+|||+|||+ .++.++..|+.+|+.||.+
T Consensus       380 ~~~i~~D~Vi~AiG~~p~~~~--~~~~~gl~~~-~~G~i~vd~~~~~Ts~pgVfAaGD~~-~g~~~v~~Ai~~G~~AA~~  455 (464)
T PRK12831        380 EFVLEVDTVIMSLGTSPNPLI--SSTTKGLKIN-KRGCIVADEETGLTSKEGVFAGGDAV-TGAATVILAMGAGKKAAKA  455 (464)
T ss_pred             eEEEECCEEEECCCCCCChhh--hcccCCceEC-CCCcEEECCCCCccCCCCEEEeCCCC-CCchHHHHHHHHHHHHHHH
Confidence            347999999999999999986  344 689988 789999997  899999999999998 5677899999999999999


Q ss_pred             Hh
Q psy3825          89 LY   90 (332)
Q Consensus        89 I~   90 (332)
                      |.
T Consensus       456 I~  457 (464)
T PRK12831        456 ID  457 (464)
T ss_pred             HH
Confidence            85

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.17  E-value=5.5e-11  Score=119.94  Aligned_cols=76  Identities=29%  Similarity=0.369  Sum_probs=67.1

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC-C-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-N-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD-e-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      .+++++|.||+|+|++|+...| ++++|++++ ++|.|+|| + ++|+.|+|||+|||+ +++.++..|+.+|+.||.+|
T Consensus       384 ~~~i~~D~VI~A~G~~p~~~~l-~~~~gl~~~-~~g~i~vd~~~~~Ts~~gVfa~GD~~-~g~~~~~~Av~~G~~AA~~i  460 (471)
T PRK12810        384 EFVLPADLVLLAMGFTGPEAGL-LAQFGVELD-ERGRVAAPDNAYQTSNPKVFAAGDMR-RGQSLVVWAIAEGRQAARAI  460 (471)
T ss_pred             eEEEECCEEEECcCcCCCchhh-ccccCcccC-CCCCEEeCCCcccCCCCCEEEccccC-CCchhHHHHHHHHHHHHHHH
Confidence            4689999999999999996533 577889888 78999998 6 999999999999999 56778899999999999998


Q ss_pred             h
Q psy3825          90 Y   90 (332)
Q Consensus        90 ~   90 (332)
                      .
T Consensus       461 ~  461 (471)
T PRK12810        461 D  461 (471)
T ss_pred             H
Confidence            5

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.17  E-value=5.1e-11  Score=130.58  Aligned_cols=81  Identities=23%  Similarity=0.307  Sum_probs=72.8

Q ss_pred             cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      ++++.++++|.||+|+|++||+++  +++.|++++ ++|+|.||+ ++|+.|+|||+|||+ .++.++..|+.+|+.||.
T Consensus       760 tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~ld-~~G~I~VDetlqTs~pgVFAaGD~a-~Gp~tvv~Ai~qGr~AA~  835 (1019)
T PRK09853        760 TGETVTLEADTVITAIGEQVDTEL--LKANGIPLD-KKGWPVVDANGETSLTNVYMIGDVQ-RGPSTIVAAIADARRAAD  835 (1019)
T ss_pred             CCCeEEEEeCEEEECCCCcCChhH--HHhcCcccc-CCCCEEeCCCcccCCCCEEEEeccc-cCchHHHHHHHHHHHHHH
Confidence            456678999999999999999998  567899888 789999999 999999999999998 567889999999999999


Q ss_pred             HHhCCC
Q psy3825          88 RLYGNG   93 (332)
Q Consensus        88 nI~G~~   93 (332)
                      +|.+..
T Consensus       836 nI~~~~  841 (1019)
T PRK09853        836 AILSRE  841 (1019)
T ss_pred             HHhhhc
Confidence            998743

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.16  E-value=9.1e-11  Score=112.95  Aligned_cols=81  Identities=28%  Similarity=0.336  Sum_probs=67.8

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCC-CCCcEEEecccCCC----CCCchhHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQT-NIPNVFAVGDVLHE----KPELTPVAV   79 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqT-SvpgIYAiGDva~g----~~~la~vA~   79 (332)
                      .+.+++++++++|.|++++|.+|+..   +...|+.++ ++|+|.||+ +|| +.|+|||+|||+..    .++.++.|.
T Consensus       221 ~v~~~~g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~-~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~  296 (364)
T TIGR03169       221 ALILADGRTLPADAILWATGARAPPW---LAESGLPLD-EDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAV  296 (364)
T ss_pred             eEEeCCCCEEecCEEEEccCCChhhH---HHHcCCCcC-CCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHH
Confidence            35566778999999999999999964   455678887 789999999 998 99999999999841    234677899


Q ss_pred             HHHHHHHHHHh
Q psy3825          80 QAGKLLAARLY   90 (332)
Q Consensus        80 ~qG~vAA~nI~   90 (332)
                      .||+++|+||.
T Consensus       297 ~~g~~~a~ni~  307 (364)
T TIGR03169       297 RQAPILAANLR  307 (364)
T ss_pred             HhHHHHHHHHH
Confidence            99999999996

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.16  E-value=2.4e-11  Score=123.95  Aligned_cols=76  Identities=26%  Similarity=0.302  Sum_probs=65.5

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ++++++|.|++++|++||++++  +.. ++++ ++|+|.||+ +||++|+|||+|||+......+..|+.+|..||.++.
T Consensus       434 ~~~i~~D~vi~a~G~~Pn~~~l--~~~-~~~~-~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~  509 (515)
T TIGR03140       434 EKQLDLDGVFVQIGLVPNTEWL--KDA-VELN-RRGEIVIDERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAF  509 (515)
T ss_pred             EEEEEcCEEEEEeCCcCCchHH--hhh-cccC-CCCeEEECCCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHH
Confidence            4679999999999999999984  444 7787 789999999 9999999999999984334567899999999999986


Q ss_pred             C
Q psy3825          91 G   91 (332)
Q Consensus        91 G   91 (332)
                      .
T Consensus       510 ~  510 (515)
T TIGR03140       510 D  510 (515)
T ss_pred             H
Confidence            4

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.15  E-value=7.7e-11  Score=118.08  Aligned_cols=78  Identities=27%  Similarity=0.314  Sum_probs=67.5

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      ++++++++|.|++|+|++||..++ .+..|+.++ ++|+|.||+  ++|++|+|||+|||+ .++.++..|+.+|+.||.
T Consensus       369 g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~~-~~g~i~vd~~~~~Ts~~~VfA~GD~~-~~~~~~~~A~~~G~~aA~  445 (457)
T PRK11749        369 GSEFTLPADLVIKAIGQTPNPLIL-STTPGLELN-RWGTIIADDETGRTSLPGVFAGGDIV-TGAATVVWAVGDGKDAAE  445 (457)
T ss_pred             CceEEEECCEEEECccCCCCchhh-ccccCccCC-CCCCEEeCCCCCccCCCCEEEeCCcC-CCchHHHHHHHHHHHHHH
Confidence            355689999999999999997753 245678888 789999998  889999999999999 567789999999999999


Q ss_pred             HHh
Q psy3825          88 RLY   90 (332)
Q Consensus        88 nI~   90 (332)
                      +|.
T Consensus       446 ~I~  448 (457)
T PRK11749        446 AIH  448 (457)
T ss_pred             HHH
Confidence            986

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.12  E-value=1.2e-10  Score=122.53  Aligned_cols=75  Identities=31%  Similarity=0.379  Sum_probs=67.2

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      ..++++|.||+|+|+.||+++  ++..|++++ ++|+|.||+  ++|++|+|||+||++ ..+.++..|+.+|+.||.+|
T Consensus       421 ~~~i~~D~VI~AiG~~p~~~l--l~~~gl~~~-~~G~I~vd~~~~~Ts~pgVfA~GDv~-~g~~~v~~Ai~~G~~AA~~I  496 (652)
T PRK12814        421 EFTLQADTVISAIGQQVDPPI--AEAAGIGTS-RNGTVKVDPETLQTSVAGVFAGGDCV-TGADIAINAVEQGKRAAHAI  496 (652)
T ss_pred             eEEEECCEEEECCCCcCCccc--ccccCcccc-CCCcEeeCCCCCcCCCCCEEEcCCcC-CCchHHHHHHHHHHHHHHHH
Confidence            347999999999999999987  567789887 789999997  899999999999998 56778899999999999998


Q ss_pred             h
Q psy3825          90 Y   90 (332)
Q Consensus        90 ~   90 (332)
                      .
T Consensus       497 ~  497 (652)
T PRK12814        497 D  497 (652)
T ss_pred             H
Confidence            5

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.11  E-value=1.8e-10  Score=116.44  Aligned_cols=77  Identities=26%  Similarity=0.323  Sum_probs=66.9

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC----C-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD----N-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD----e-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+++++|.||+|+|++|+...+ +++.|++++ ++|+|.||    + ++|++|+|||+|||+ +.+.++..|+.+|+.|
T Consensus       381 ~~~~i~~D~Vi~a~G~~p~~~~~-~~~~gl~~~-~~g~i~vd~~~~~~~~T~~~gVfa~GD~~-~~~~~~~~Ai~~G~~a  457 (467)
T TIGR01318       381 SEFVLPADVVIMAFGFQPHAMPW-LAGHGITLD-SWGRIITGDVSYLPYQTTNPKIFAGGDAV-RGADLVVTAVAEGRQA  457 (467)
T ss_pred             ceEEEECCEEEECCcCCCCcccc-ccccCccCC-CCCCEEeCCccccCccCCCCCEEEECCcC-CCccHHHHHHHHHHHH
Confidence            34689999999999999996432 567788888 78999999    7 899999999999998 6677889999999999


Q ss_pred             HHHHh
Q psy3825          86 AARLY   90 (332)
Q Consensus        86 A~nI~   90 (332)
                      |.+|.
T Consensus       458 A~~i~  462 (467)
T TIGR01318       458 AQGIL  462 (467)
T ss_pred             HHHHH
Confidence            99985

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.09  E-value=1.1e-10  Score=119.16  Aligned_cols=76  Identities=24%  Similarity=0.258  Sum_probs=65.9

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      .+++++|.|++++|++||++++  +.. ++++ ++|+|.||+ +||++|||||+|||+......+..|+.+|..||.+++
T Consensus       433 ~~~i~~D~v~~~~G~~p~~~~l--~~~-v~~~-~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~  508 (517)
T PRK15317        433 EHHLELEGVFVQIGLVPNTEWL--KGT-VELN-RRGEIIVDARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAF  508 (517)
T ss_pred             EEEEEcCEEEEeECCccCchHH--hhh-eeeC-CCCcEEECcCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHH
Confidence            3579999999999999999984  444 7887 789999999 9999999999999984345678999999999999886


Q ss_pred             C
Q psy3825          91 G   91 (332)
Q Consensus        91 G   91 (332)
                      .
T Consensus       509 ~  509 (517)
T PRK15317        509 D  509 (517)
T ss_pred             H
Confidence            4

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.09  E-value=4.2e-10  Score=113.07  Aligned_cols=94  Identities=24%  Similarity=0.336  Sum_probs=74.5

Q ss_pred             ceeecCCee-EEEcCEEEEccCccccCccccccc-cCceeecCCCeeecCC-CCC-CCCcEEEecccCCC-----CCCch
Q psy3825           5 TGASMDKVF-EDTYDTVLMAIGRRALTEETAVSN-AGVKVIPENAKIDSDN-EQT-NIPNVFAVGDVLHE-----KPELT   75 (332)
Q Consensus         5 ~~v~~~dg~-~I~aD~VLvAtGr~PNt~~L~Le~-aGl~ld~e~G~I~VDe-lqT-SvpgIYAiGDva~g-----~~~la   75 (332)
                      +++.++++. +|++|.++||+|.+++.-.   ++ .|++.| .+|++.||+ ||+ +.|+|||+|||+..     .|+.+
T Consensus       238 ~~v~~~~g~~~I~~~tvvWaaGv~a~~~~---~~l~~~e~d-r~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tA  313 (405)
T COG1252         238 DGVTLKDGEEEIPADTVVWAAGVRASPLL---KDLSGLETD-RRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTA  313 (405)
T ss_pred             CcEEEccCCeeEecCEEEEcCCCcCChhh---hhcChhhhc-cCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChh
Confidence            356666666 5999999999999998853   44 478887 789999999 886 89999999999962     26889


Q ss_pred             hHHHHHHHHHHHHHh----CCCCcccccccc
Q psy3825          76 PVAVQAGKLLAARLY----GNGTTQMDYQNV  102 (332)
Q Consensus        76 ~vA~~qG~vAA~nI~----G~~~~~~~y~~v  102 (332)
                      +.|.+||+.+|+||.    |++..++.|..-
T Consensus       314 Q~A~Qqg~~~a~ni~~~l~g~~l~~f~y~~~  344 (405)
T COG1252         314 QAAHQQGEYAAKNIKARLKGKPLKPFKYKDK  344 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCcccce
Confidence            999999999999997    434444555443

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.09  E-value=2.1e-10  Score=122.06  Aligned_cols=76  Identities=25%  Similarity=0.352  Sum_probs=66.4

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ..++++|.||+|+|++||+.++. ...|++++ ++|+|.||+ ++||+|+|||+|||+ .++.++..|+.+|+.||.+|.
T Consensus       670 ~~~i~~D~Vi~A~G~~p~~~l~~-~~~gl~~~-~~G~i~vd~~~~Ts~~gVfA~GD~~-~g~~~vv~Av~~G~~AA~~I~  746 (752)
T PRK12778        670 TFTVDVDLVIVSVGVSPNPLVPS-SIPGLELN-RKGTIVVDEEMQSSIPGIYAGGDIV-RGGATVILAMGDGKRAAAAID  746 (752)
T ss_pred             eEEEECCEEEECcCCCCCccccc-cccCceEC-CCCCEEeCCCCCCCCCCEEEeCCcc-CCcHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999987531 23488898 789999999 999999999999999 567789999999999999986

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.08  E-value=2.3e-10  Score=120.04  Aligned_cols=76  Identities=29%  Similarity=0.343  Sum_probs=66.3

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-----CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-----EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA   86 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-----lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA   86 (332)
                      ..++++|.||+|+|+.|++..+ +++.|++++ ++|.|.||+     ++||+|+|||+||++ .++.++..|+.+|+.||
T Consensus       568 ~~~i~~D~Vi~AiG~~p~~~~~-~~~~gl~~~-~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~-~g~~~vv~Ai~~Gr~AA  644 (654)
T PRK12769        568 EFVMPADAVIMAFGFNPHGMPW-LESHGVTVD-KWGRIIADVESQYRYQTSNPKIFAGGDAV-RGADLVVTAMAEGRHAA  644 (654)
T ss_pred             eEEEECCEEEECccCCCCcccc-ccccCCcCC-CCCCEEeCCCcccCcccCCCCEEEcCCcC-CCCcHHHHHHHHHHHHH
Confidence            3479999999999999996432 577889998 789999983     689999999999999 66788999999999999


Q ss_pred             HHHh
Q psy3825          87 ARLY   90 (332)
Q Consensus        87 ~nI~   90 (332)
                      .+|.
T Consensus       645 ~~I~  648 (654)
T PRK12769        645 QGII  648 (654)
T ss_pred             HHHH
Confidence            9986

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.07  E-value=2.2e-10  Score=125.85  Aligned_cols=80  Identities=25%  Similarity=0.343  Sum_probs=71.4

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      +++.++++|.||+|+|++||+++  +++.|++++ ++|+|.||+  ++|+.|+|||+|||+ .++.++..|+.+|+.||.
T Consensus       758 Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld-~~G~I~VD~~~~~Ts~pgVFAaGD~a-~GP~tVv~AIaqGr~AA~  833 (1012)
T TIGR03315       758 GETVDLPADTVIAAVGEQVDTDL--LQKNGIPLD-EYGWPVVNQATGETNITNVFVIGDAN-RGPATIVEAIADGRKAAN  833 (1012)
T ss_pred             CCeEEEEeCEEEEecCCcCChHH--HHhcCcccC-CCCCEEeCCCCCccCCCCEEEEeCcC-CCccHHHHHHHHHHHHHH
Confidence            45568999999999999999997  567889988 789999997  899999999999998 568889999999999999


Q ss_pred             HHhCCC
Q psy3825          88 RLYGNG   93 (332)
Q Consensus        88 nI~G~~   93 (332)
                      +|++..
T Consensus       834 nIl~~~  839 (1012)
T TIGR03315       834 AILSRE  839 (1012)
T ss_pred             HHhccc
Confidence            998743

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.06  E-value=2.9e-10  Score=115.57  Aligned_cols=75  Identities=29%  Similarity=0.295  Sum_probs=64.9

Q ss_pred             eeEEEcCEEEEccCcc-ccCccccccccCceeecCCCeeec-CC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRR-ALTEETAVSNAGVKVIPENAKIDS-DN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~-PNt~~L~Le~aGl~ld~e~G~I~V-De-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      ..++++|.||+|+|++ ||+++  ++..|++++ ++|.|.+ |+ ++|++|+|||+|||+ .++.++..|+.+|+.||.+
T Consensus       398 ~~~i~~D~Vi~AiG~~~p~~~~--~~~~gl~~~-~~G~i~~~~~~~~Ts~~gVfAaGD~~-~g~~~~~~Av~~G~~AA~~  473 (485)
T TIGR01317       398 EEVFEADLVLLAMGFVGPEQIL--LDDFGVKKT-RRGNISAGYDDYSTSIPGVFAAGDCR-RGQSLIVWAINEGRKAAAA  473 (485)
T ss_pred             eEEEECCEEEEccCcCCCcccc--ccccCcccC-CCCCEEecCCCceECCCCEEEeeccC-CCcHHHHHHHHHHHHHHHH
Confidence            4579999999999996 88887  567789887 7888855 56 999999999999998 5677888999999999999


Q ss_pred             Hh
Q psy3825          89 LY   90 (332)
Q Consensus        89 I~   90 (332)
                      |.
T Consensus       474 i~  475 (485)
T TIGR01317       474 VD  475 (485)
T ss_pred             HH
Confidence            85

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK10262 thioredoxin reductase; Provisional

Probab=99.03  E-value=2e-10  Score=109.09  Aligned_cols=74  Identities=24%  Similarity=0.271  Sum_probs=60.7

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC------CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN------EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe------lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      .+++++|.||+++|++||++++  + .++.++  +|+|.||+      ++||+|+|||+|||++.....+..|+.+|..|
T Consensus       232 ~~~i~~D~vv~a~G~~p~~~l~--~-~~l~~~--~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~A  306 (321)
T PRK10262        232 IESLDVAGLFVAIGHSPNTAIF--E-GQLELE--NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMA  306 (321)
T ss_pred             EEEEECCEEEEEeCCccChhHh--h-cccccc--CCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHH
Confidence            4579999999999999999863  2 256664  68899985      58999999999999953455677799999999


Q ss_pred             HHHHh
Q psy3825          86 AARLY   90 (332)
Q Consensus        86 A~nI~   90 (332)
                      |..|.
T Consensus       307 a~~~~  311 (321)
T PRK10262        307 ALDAE  311 (321)
T ss_pred             HHHHH
Confidence            98875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.03  E-value=4.4e-10  Score=117.84  Aligned_cols=78  Identities=28%  Similarity=0.391  Sum_probs=66.8

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-----CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-----EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-----lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +..++++|.||+|+|++|+...+ ++++|++++ ++|.|.||+     +|||+|+|||+||++ .++.++..|+.+|+.|
T Consensus       550 ~~~~i~aD~Vi~AiG~~p~~~~~-~~~~gl~~~-~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~-~g~~~vv~Ai~~Gr~A  626 (639)
T PRK12809        550 SEFELPADVLIMAFGFQAHAMPW-LQGSGIKLD-KWGLIQTGDVGYLPTQTHLKKVFAGGDAV-HGADLVVTAMAAGRQA  626 (639)
T ss_pred             ceEEEECCEEEECcCCCCCcccc-ccccCcccC-CCCCEEeCCCcccCcccCCCCEEEcCCCC-CCchHHHHHHHHHHHH
Confidence            34689999999999999986433 577889998 789999973     789999999999998 5677889999999999


Q ss_pred             HHHHhC
Q psy3825          86 AARLYG   91 (332)
Q Consensus        86 A~nI~G   91 (332)
                      |.+|..
T Consensus       627 A~~i~~  632 (639)
T PRK12809        627 ARDMLT  632 (639)
T ss_pred             HHHHHH
Confidence            999863

>PRK13984 putative oxidoreductase; Provisional

Probab=99.02  E-value=4.7e-10  Score=116.26  Aligned_cols=76  Identities=24%  Similarity=0.309  Sum_probs=62.5

Q ss_pred             CeeEEEcCEEEEccCccccCcccccc-ccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVS-NAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le-~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      +++++++|.||+|+|++||+++|..+ ..+++++  +|+|.||+ +|||+|+|||+||++ ..+.+ ..|+.+|+.||.+
T Consensus       521 ~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~--~G~i~vd~~~~Ts~~gVfAaGD~~-~~~~~-v~Ai~~G~~AA~~  596 (604)
T PRK13984        521 DQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFV--RGRILTNEYGQTSIPWLFAGGDIV-HGPDI-IHGVADGYWAAEG  596 (604)
T ss_pred             ceEEEECCEEEEeeCCCCChhhhhhhhccCcccc--CCeEEeCCCCccCCCCEEEecCcC-CchHH-HHHHHHHHHHHHH
Confidence            44689999999999999999886422 1246553  68899999 999999999999999 55544 6799999999999


Q ss_pred             Hh
Q psy3825          89 LY   90 (332)
Q Consensus        89 I~   90 (332)
                      |.
T Consensus       597 I~  598 (604)
T PRK13984        597 ID  598 (604)
T ss_pred             HH
Confidence            85

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.99  E-value=5.6e-10  Score=115.14  Aligned_cols=71  Identities=24%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             EcCE----EEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          16 TYDT----VLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        16 ~aD~----VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ++|.    |++++|++||++++  + .+++++ ++|+|.||+ ||||+|+|||+|||+...+..+..|+.||++||.+|.
T Consensus       230 ~~D~~~~~Vi~a~G~~Pn~~l~--~-~~l~l~-~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       230 PKDAGTFGVFVFVGYAPSSELF--K-GVVELD-KRGYIPTNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE  305 (555)
T ss_pred             cccccceEEEEEeCCCCChhHH--h-hhcccC-CCCeEEeCCccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence            3676    99999999999874  3 368887 789999999 9999999999999984344567889999999999985

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.96  E-value=1.2e-09  Score=112.69  Aligned_cols=76  Identities=26%  Similarity=0.340  Sum_probs=65.8

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccc-cCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSN-AGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA   86 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~-aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA   86 (332)
                      ++..++++|.||+|+|+.|+++++  ++ .|++ + ++|+|.||+  ++|++|+|||+||++ .++.++..|+.+|+.||
T Consensus       362 g~~~~i~~D~Vi~A~G~~p~~~~~--~~~~gl~-~-~~G~i~vd~~~~~ts~~~Vfa~GD~~-~g~~~v~~Av~~G~~aA  436 (564)
T PRK12771        362 GEEETLEADLVVLAIGQDIDSAGL--ESVPGVE-V-GRGVVQVDPNFMMTGRPGVFAGGDMV-PGPRTVTTAIGHGKKAA  436 (564)
T ss_pred             CceEEEECCEEEECcCCCCchhhh--hhccCcc-c-CCCCEEeCCCCccCCCCCEEeccCcC-CCchHHHHHHHHHHHHH
Confidence            334689999999999999998874  43 5777 6 689999998  889999999999998 56788999999999999


Q ss_pred             HHHh
Q psy3825          87 ARLY   90 (332)
Q Consensus        87 ~nI~   90 (332)
                      .+|.
T Consensus       437 ~~i~  440 (564)
T PRK12771        437 RNID  440 (564)
T ss_pred             HHHH
Confidence            9985

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.96  E-value=1.2e-09  Score=119.73  Aligned_cols=79  Identities=23%  Similarity=0.297  Sum_probs=67.5

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      ++..++++|.||+|+|+.||... .....|++++ ++|.|.||+  ++||+|+|||+|||+ .++.++..|+.+|+.||.
T Consensus       544 G~e~~i~aD~VI~AiG~~p~~~l-~~~~~gle~~-~~G~I~vd~~~~~Ts~pgVFAaGD~~-~G~~~vv~Ai~eGr~AA~  620 (944)
T PRK12779        544 GEIERVPVDLVIMALGNTANPIM-KDAEPGLKTN-KWGTIEVEKGSQRTSIKGVYSGGDAA-RGGSTAIRAAGDGQAAAK  620 (944)
T ss_pred             CceEEEECCEEEEcCCcCCChhh-hhcccCceEC-CCCCEEECCCCCccCCCCEEEEEcCC-CChHHHHHHHHHHHHHHH
Confidence            33467999999999999999753 2344688888 789999996  899999999999999 567789999999999999


Q ss_pred             HHhC
Q psy3825          88 RLYG   91 (332)
Q Consensus        88 nI~G   91 (332)
                      +|..
T Consensus       621 ~I~~  624 (944)
T PRK12779        621 EIVG  624 (944)
T ss_pred             HHHH
Confidence            9964

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.96  E-value=9.6e-09  Score=97.93  Aligned_cols=110  Identities=23%  Similarity=0.207  Sum_probs=80.9

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCc-eeecCCCeeecCC-CCCC-CCcEEEecccCCC---------CCCc
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGV-KVIPENAKIDSDN-EQTN-IPNVFAVGDVLHE---------KPEL   74 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl-~ld~e~G~I~VDe-lqTS-vpgIYAiGDva~g---------~~~l   74 (332)
                      +...++.++++|.+++++|.+||+.+  ..+.+. ... .+|+|.||+ ++|+ .++|||+|||+..         ....
T Consensus       216 ~~~~~~~~~~~d~~~~~~g~~p~~~l--~~~~~~~~~~-~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~  292 (415)
T COG0446         216 VVGIDGEEIKADLVIIGPGERPNVVL--ANDALPGLAL-AGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIAL  292 (415)
T ss_pred             EEEeCCcEEEeeEEEEeecccccHHH--HhhCccceec-cCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeec
Confidence            35566778999999999999999776  344431 333 578899999 9997 9999999998751         1234


Q ss_pred             hhHHHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHH
Q psy3825          75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEE  120 (332)
Q Consensus        75 a~vA~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe  120 (332)
                      ++.|..++++++.++.+. ...............+.....+|+++.
T Consensus       293 ~~~a~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~  337 (415)
T COG0446         293 WAIAVAAGRIAAENIAGA-LRIPGLLGTVISDVGDLCAASTGLTEG  337 (415)
T ss_pred             hhhHhhhhHHHHHHhccc-cccccccCceEEEEcCeEEEEecCCcc
Confidence            578899999999999875 221122222344566788899999998

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.7e-09  Score=104.89  Aligned_cols=77  Identities=31%  Similarity=0.367  Sum_probs=65.2

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      ++.+++++|.|++++|..|++++  +...++ ++ ++|+|.||+ ++||+|+|||+||++.....++.+|..+|..||.+
T Consensus       220 ~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~-~~g~I~v~~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~  295 (305)
T COG0492         220 GEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LD-ENGYIVVDEEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALS  295 (305)
T ss_pred             CceEEEEeceEEEecCCCCchHH--Hhhccc-cC-CCCcEEcCCCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHH
Confidence            34558999999999999999987  456666 77 799999999 99999999999999964444788899999999887


Q ss_pred             Hh
Q psy3825          89 LY   90 (332)
Q Consensus        89 I~   90 (332)
                      +.
T Consensus       296 a~  297 (305)
T COG0492         296 AE  297 (305)
T ss_pred             HH
Confidence            74

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.89  E-value=3e-09  Score=117.13  Aligned_cols=76  Identities=30%  Similarity=0.402  Sum_probs=65.1

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC-----C-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-----N-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD-----e-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      ..++++|.||+|+|++||+.++. ...|++++ ++|.|.||     + ++||+|+|||+||++ .++.++..|+.+|+.|
T Consensus       670 ~~~i~~D~Vi~AiG~~p~~~~~~-~~~gl~l~-~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~-~G~~~vv~Ai~~Gr~A  746 (1006)
T PRK12775        670 FKDLECDTVIYALGTKANPIITQ-STPGLALN-KWGNIAADDGKLESTQSTNLPGVFAGGDIV-TGGATVILAMGAGRRA  746 (1006)
T ss_pred             eEEEEcCEEEECCCcCCChhhhh-ccCCcccC-CCCcEEeCCCccccCcCCCCCCEEEecCcC-CCccHHHHHHHHHHHH
Confidence            35799999999999999987632 33478887 78889888     5 899999999999998 5678899999999999


Q ss_pred             HHHHh
Q psy3825          86 AARLY   90 (332)
Q Consensus        86 A~nI~   90 (332)
                      |.+|.
T Consensus       747 A~~I~  751 (1006)
T PRK12775        747 ARSIA  751 (1006)
T ss_pred             HHHHH
Confidence            99985

>KOG1336|consensus

Probab=98.84  E-value=2.7e-09  Score=108.39  Aligned_cols=81  Identities=25%  Similarity=0.277  Sum_probs=64.7

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCC---------CCch
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEK---------PELT   75 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~---------~~la   75 (332)
                      .+.+.+++++++|.|++.+|.+||+.++  +. |..++ .+|+|.||+ |||++|||||+|||++..         ..-+
T Consensus       291 ~V~l~dg~~l~adlvv~GiG~~p~t~~~--~~-g~~~~-~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~  366 (478)
T KOG1336|consen  291 EVKLKDGKTLEADLVVVGIGIKPNTSFL--EK-GILLD-SKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHV  366 (478)
T ss_pred             EEEeccCCEeccCeEEEeeccccccccc--cc-cceec-ccCCEeehhceeeccCCcccccceeecccccccccccchHH
Confidence            3667788999999999999999999984  44 77788 799999999 999999999999999611         1223


Q ss_pred             hHHHHHHHHHHHHHh
Q psy3825          76 PVAVQAGKLLAARLY   90 (332)
Q Consensus        76 ~vA~~qG~vAA~nI~   90 (332)
                      ..|..+|+.++..+.
T Consensus       367 ~~A~~~g~~av~ai~  381 (478)
T KOG1336|consen  367 DHARASGRQAVKAIK  381 (478)
T ss_pred             HHHHHHHHhhhhhhh
Confidence            466777775555554

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.53  E-value=1.9e-07  Score=96.13  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             cCCeeEEEcCEEEEccCcc--ccCcc-ccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIGRR--ALTEE-TAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~--PNt~~-L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      +++.+++++|.||.|+|.+  |+.++ ++ +..|+..+ ++|+|.+|+ ++|++|||||+|||..|...++-.++.+|+.
T Consensus       335 tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~gv~~n-~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~  412 (491)
T PLN02852        335 TGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRGVVPN-VHGRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEE  412 (491)
T ss_pred             CCCEEEEECCEEEEeecCCCCCCCCCccc-cCcCeeEC-CCceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHH
Confidence            3455679999999999998  66653 22 33467777 789999998 9999999999999996545588889999999


Q ss_pred             HHHHHhC
Q psy3825          85 LAARLYG   91 (332)
Q Consensus        85 AA~nI~G   91 (332)
                      ++++|..
T Consensus       413 ta~~i~~  419 (491)
T PLN02852        413 TVASIAE  419 (491)
T ss_pred             HHHHHHH
Confidence            9999974

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.46  E-value=1.3e-07  Score=82.47  Aligned_cols=60  Identities=32%  Similarity=0.465  Sum_probs=47.9

Q ss_pred             ecCCeeEEEcCEEEEccCccccCcccc----------------------------------c-cccCceeecCCCeeecC
Q psy3825           8 SMDKVFEDTYDTVLMAIGRRALTEETA----------------------------------V-SNAGVKVIPENAKIDSD   52 (332)
Q Consensus         8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~----------------------------------L-e~aGl~ld~e~G~I~VD   52 (332)
                      ..+++.++.+|.||+|+|..|+...+.                                  | +.+|++++ ++|+|.||
T Consensus       102 ~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~-~~g~i~vd  180 (201)
T PF07992_consen  102 ETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELD-ENGFIKVD  180 (201)
T ss_dssp             ETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBT-TTSSBEEB
T ss_pred             ccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            356788999999999999886632110                                  1 45678887 78999999


Q ss_pred             C-CCCCCCcEEEecccC
Q psy3825          53 N-EQTNIPNVFAVGDVL   68 (332)
Q Consensus        53 e-lqTSvpgIYAiGDva   68 (332)
                      + +||++|||||+|||+
T Consensus       181 ~~~~t~~~~Iya~GD~a  197 (201)
T PF07992_consen  181 ENLQTSVPGIYAAGDCA  197 (201)
T ss_dssp             TTSBBSSTTEEE-GGGB
T ss_pred             ccccccccccccccccc
Confidence            9 999999999999998

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2495|consensus

Probab=98.45  E-value=2.7e-07  Score=93.40  Aligned_cols=78  Identities=23%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             cCCeeEEEcCEEEEccCccccCccccccccCceeecCCC--eeecCC-CCC-CCCcEEEecccCC--CCCCchhHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA--KIDSDN-EQT-NIPNVFAVGDVLH--EKPELTPVAVQAG   82 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G--~I~VDe-lqT-SvpgIYAiGDva~--g~~~la~vA~~qG   82 (332)
                      +++.++|+.-+++||+|..|..-.   .++.-.++ +.|  ++.||| ||. +.+||||+|||+.  +.++++++|.+||
T Consensus       310 ~g~~~~iPYG~lVWatG~~~rp~~---k~lm~~i~-e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG  385 (491)
T KOG2495|consen  310 DGEIEEIPYGLLVWATGNGPRPVI---KDLMKQID-EQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQG  385 (491)
T ss_pred             CCceeeecceEEEecCCCCCchhh---hhHhhcCC-ccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHH
Confidence            344578999999999999776532   22233344 455  799999 996 8999999999994  3455899999999


Q ss_pred             HHHHHHHh
Q psy3825          83 KLLAARLY   90 (332)
Q Consensus        83 ~vAA~nI~   90 (332)
                      ..+|+++-
T Consensus       386 ~yLAk~fn  393 (491)
T KOG2495|consen  386 AYLAKNFN  393 (491)
T ss_pred             HHHHHHHH
Confidence            99999874

>KOG0404|consensus

Probab=98.42  E-value=1.2e-07  Score=89.72  Aligned_cols=77  Identities=25%  Similarity=0.286  Sum_probs=63.3

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      +.+++.+.++++-++.++|-.|++++|  ++ ++++| ++|+|+|-+  -.||+|++||+|||.+.+...+.+|...|.+
T Consensus       234 ~~tge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d-~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGci  309 (322)
T KOG0404|consen  234 VKTGEETDLPVSGLFFAIGHSPATKFL--KG-QVELD-EDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCI  309 (322)
T ss_pred             cccCcccccccceeEEEecCCchhhHh--cC-ceeec-cCceEEeccCcccccccceeeccccchHHHHHHHhhhccchh
Confidence            556777889999999999999999994  45 69999 899999976  7899999999999986555566666666666


Q ss_pred             HHH
Q psy3825          85 LAA   87 (332)
Q Consensus        85 AA~   87 (332)
                      +|-
T Consensus       310 aal  312 (322)
T KOG0404|consen  310 AAL  312 (322)
T ss_pred             hhh
Confidence            553

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.2e-07  Score=94.29  Aligned_cols=77  Identities=25%  Similarity=0.296  Sum_probs=61.6

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      ++...++-+-|++-+|..||++|  |+.. ++++ ++|.|.||. ..||+|+|||+|||++......-.|+.+|..|+-.
T Consensus       434 ge~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~-~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~  509 (520)
T COG3634         434 GEEHHLELEGVFVQIGLLPNTEW--LKGA-VELN-RRGEIIVDARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLS  509 (520)
T ss_pred             CceeEEEeeeeEEEEecccChhH--hhch-hhcC-cCccEEEecCCCcCCCceeecCcccCCccceEEEEecCcchhhhh
Confidence            34456778889999999999999  5565 8998 899999999 99999999999999964445555666666666554


Q ss_pred             Hh
Q psy3825          89 LY   90 (332)
Q Consensus        89 I~   90 (332)
                      .+
T Consensus       510 AF  511 (520)
T COG3634         510 AF  511 (520)
T ss_pred             hh
Confidence            43

>KOG1346|consensus

Probab=98.27  E-value=3.8e-07  Score=92.42  Aligned_cols=84  Identities=19%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC------CCCCc--hhH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH------EKPEL--TPV   77 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~------g~~~l--a~v   77 (332)
                      +.++||.++..|+|++|+|-.||+++  .+..|+++|.+-|.+.||. |+. ..|||++||++.      |....  ...
T Consensus       428 lkL~dG~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D~~LGrRRVehhdh  504 (659)
T KOG1346|consen  428 LKLSDGSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFEDGVLGRRRVEHHDH  504 (659)
T ss_pred             EEecCCCeeeeeeEEEEecCCCchhh--cccccceeecccCcEEeeheeec-ccceeeecchhhhhcccccceecccccc
Confidence            56688999999999999999999997  5778999984448899999 886 479999999985      22222  236


Q ss_pred             HHHHHHHHHHHHhCCC
Q psy3825          78 AVQAGKLLAARLYGNG   93 (332)
Q Consensus        78 A~~qG~vAA~nI~G~~   93 (332)
                      |+-.||.|++||.|..
T Consensus       505 avvSGRLAGENMtgAa  520 (659)
T KOG1346|consen  505 AVVSGRLAGENMTGAA  520 (659)
T ss_pred             ceeeceeccccccccc
Confidence            7788999999999843

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.78  E-value=7.9e-06  Score=83.60  Aligned_cols=79  Identities=30%  Similarity=0.392  Sum_probs=65.6

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-C-CCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-E-QTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-l-qTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      ++..++++|.|+.|+|..++...+.....++..+ .+|.|.+|+ + +||+|++||.||+. .+..++..|+.+|+.+|+
T Consensus       367 gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~-~~g~i~~~~~~~~ts~~~vfa~gD~~-~g~~~vv~ai~eGr~aak  444 (457)
T COG0493         367 GTEKTDAADTVILAIGFEGDATDGLLLEFGLKLD-KRGRIKVDENLQQTSIPGVFAGGDAV-RGAALVVWAIAEGREAAK  444 (457)
T ss_pred             CceEEehHHHHHHHhccCCCcccccccccccccC-CCCceecccccccccCCCeeeCceec-cchhhhhhHHhhchHHHH
Confidence            4456789999999999998865533334467787 789999999 7 99999999999999 456788999999999998


Q ss_pred             HHh
Q psy3825          88 RLY   90 (332)
Q Consensus        88 nI~   90 (332)
                      .|.
T Consensus       445 ~i~  447 (457)
T COG0493         445 AID  447 (457)
T ss_pred             hhh
Confidence            774

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.73  E-value=5.1e-05  Score=83.89  Aligned_cols=73  Identities=14%  Similarity=0.011  Sum_probs=54.2

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCcee--ecCC-CeeecCCCCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKV--IPEN-AKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA   86 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~l--d~e~-G~I~VDelqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA   86 (332)
                      ++++++++|.|+++.|++||+++  +..+|+++  +... +++    -.|++|+|||+||++ +. ..+..|..+|+.||
T Consensus       393 g~~~~i~~D~V~va~G~~Pnt~L--~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~~-g~-~~~~~A~~eG~~Aa  464 (985)
T TIGR01372       393 GAGQRLEADALAVSGGWTPVVHL--FSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAAN-GL-FGLAAALADGAAAG  464 (985)
T ss_pred             CceEEEECCEEEEcCCcCchhHH--HHhcCCCeeeccccCcee----cCCCCCCeEEeeccC-Cc-cCHHHHHHHHHHHH
Confidence            35678999999999999999997  34455433  3111 111    237899999999998 44 45677999999999


Q ss_pred             HHHh
Q psy3825          87 ARLY   90 (332)
Q Consensus        87 ~nI~   90 (332)
                      ..++
T Consensus       465 ~~i~  468 (985)
T TIGR01372       465 AAAA  468 (985)
T ss_pred             HHHH
Confidence            8875

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2755|consensus

Probab=97.49  E-value=7.2e-05  Score=72.36  Aligned_cols=54  Identities=31%  Similarity=0.427  Sum_probs=45.9

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH   69 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~   69 (332)
                      ..+.+|.+++|+|..||++++  -+.-+++. +.|.|+||+ |+||.|+|||+||+..
T Consensus       267 ~qlt~d~ivSatgvtpn~e~~--~~~~lq~~-edggikvdd~m~tslpdvFa~gDvct  321 (334)
T KOG2755|consen  267 NQLTCDFIVSATGVTPNSEWA--MNKMLQIT-EDGGIKVDDAMETSLPDVFAAGDVCT  321 (334)
T ss_pred             ceeeeeEEEeccccCcCceEE--ecChhhhc-cccCeeehhhccccccceeeecceec
Confidence            357899999999999999963  33346666 788899999 9999999999999984

>KOG0399|consensus

Probab=97.37  E-value=0.00013  Score=81.23  Aligned_cols=76  Identities=22%  Similarity=0.252  Sum_probs=62.6

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC-C-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-N-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD-e-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      .+.+++|+||+|.|..-.-..+ .++.+++.| .++.|.+- + ..|++++|||+|||- .+..++..|+++||-+|+.+
T Consensus      2039 ee~~eadlv~lamgf~gpe~~~-~~~~~~~~d-~rsni~t~~~~y~t~v~~vfaagdcr-rgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2039 EEIIEADLVILAMGFVGPEKSV-IEQLNLKTD-PRSNILTPKDSYSTDVAKVFAAGDCR-RGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred             ceeeecceeeeeccccCcchhh-hhhcCcccC-ccccccCCCccccccccceeeccccc-CCceEEEEEehhhhHHHHHH
Confidence            4679999999999986433332 577889998 78888874 4 899999999999998 56778999999999999886


Q ss_pred             h
Q psy3825          90 Y   90 (332)
Q Consensus        90 ~   90 (332)
                      -
T Consensus      2116 d 2116 (2142)
T KOG0399|consen 2116 D 2116 (2142)
T ss_pred             H
Confidence            4

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.32  E-value=0.0006  Score=69.21  Aligned_cols=77  Identities=18%  Similarity=0.080  Sum_probs=57.0

Q ss_pred             eeEEEcCEEEEccCccccCcc-------------c--------------------cccccCceeecCCCeeecCC-CCCC
Q psy3825          12 VFEDTYDTVLMAIGRRALTEE-------------T--------------------AVSNAGVKVIPENAKIDSDN-EQTN   57 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~-------------L--------------------~Le~aGl~ld~e~G~I~VDe-lqTS   57 (332)
                      ..++++|.||+|+|+.++..+             |                    .+...||.+| ++ ...||. .++.
T Consensus       302 ~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d-~~-~~p~~~~g~~~  379 (422)
T PRK05329        302 DIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD-AT-LRPLDSQGGPV  379 (422)
T ss_pred             eEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC-CC-cCcccCCCCee
Confidence            356899999999999766543             1                    2245677776 33 566677 7788


Q ss_pred             CCcEEEecccCCCCCCch------hHHHHHHHHHHHHHhC
Q psy3825          58 IPNVFAVGDVLHEKPELT------PVAVQAGKLLAARLYG   91 (332)
Q Consensus        58 vpgIYAiGDva~g~~~la------~vA~~qG~vAA~nI~G   91 (332)
                      .+||||+|++. ++...+      -+|+..|-.|+++|..
T Consensus       380 ~~nl~a~G~vl-~g~d~~~~~~g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        380 IENLYAAGAVL-GGYDPIREGCGSGVALATALHAAEQIAE  418 (422)
T ss_pred             ccceEEeeehh-cCCchHHhCCCchhHHHHHHHHHHHHHH
Confidence            99999999999 555544      3788888888888864

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.79  E-value=0.0024  Score=66.41  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=59.5

Q ss_pred             cCCeeEEEcCEEEEccCccccCccccc-cccCceeecCCCeeecCC--C---CCCCCcEEEecccCCCCCCchhHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIGRRALTEETAV-SNAGVKVIPENAKIDSDN--E---QTNIPNVFAVGDVLHEKPELTPVAVQAG   82 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~PNt~~L~L-e~aGl~ld~e~G~I~VDe--l---qTSvpgIYAiGDva~g~~~la~vA~~qG   82 (332)
                      +++..++++|+|++++|..|....-.+ ..+|+..+ +.|+++...  +   +|+.+|||.+|=+.  +|+-.+.++.||
T Consensus       457 ~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~-~~gF~k~~hPkl~pv~s~~~GIflAG~aq--gPkdI~~siaqa  533 (622)
T COG1148         457 TGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQD-EDGFLKEAHPKLRPVDSNRDGIFLAGAAQ--GPKDIADSIAQA  533 (622)
T ss_pred             CccceecccceEEEeeccccCcchHHHHHhcCcccC-CCCccccCCCCcccccccCCcEEEeeccc--CCccHHHHHHHh
Confidence            345678999999999999985543223 34789998 799998864  5   47899999999775  677888888887


Q ss_pred             HHHHHHH
Q psy3825          83 KLLAARL   89 (332)
Q Consensus        83 ~vAA~nI   89 (332)
                      ..||...
T Consensus       534 ~aAA~kA  540 (622)
T COG1148         534 KAAAAKA  540 (622)
T ss_pred             HHHHHHH
Confidence            7766543

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=95.97  E-value=0.0083  Score=63.34  Aligned_cols=43  Identities=19%  Similarity=0.267  Sum_probs=36.8

Q ss_pred             eeecC-------------C-CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHHh
Q psy3825          48 KIDSD-------------N-EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        48 ~I~VD-------------e-lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI~   90 (332)
                      .|.||             + ++|++||+||+|||+. +...+++.+..+|++++.++.
T Consensus       371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~  428 (608)
T PRK06854        371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAV  428 (608)
T ss_pred             EEEecCcccccccccccccccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHH
Confidence            48999             9 9999999999999974 245678888899999998875

>PRK08275 putative oxidoreductase; Provisional

Probab=95.26  E-value=0.018  Score=59.85  Aligned_cols=44  Identities=16%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             CeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          47 AKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        47 G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      |.|.||+ ++|++|++||+|||+.........|.-.|+.|+.++.
T Consensus       357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~  401 (554)
T PRK08275        357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA  401 (554)
T ss_pred             CcEEECCCCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence            4699999 9999999999999973222334456677888777765

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.12  E-value=0.021  Score=62.90  Aligned_cols=45  Identities=22%  Similarity=0.278  Sum_probs=34.0

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      .|+|.||. ++|++||+||+|||+.+.......|.-.|+.|+.++.
T Consensus       361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~  406 (897)
T PRK13800        361 ASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAA  406 (897)
T ss_pred             cceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHH
Confidence            36799999 9999999999999974323333456677777777764

>KOG3851|consensus

Probab=94.42  E-value=0.054  Score=54.33  Aligned_cols=73  Identities=21%  Similarity=0.316  Sum_probs=47.0

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCC-CCCcEEEecccCCCCCC--chhHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQT-NIPNVFAVGDVLHEKPE--LTPVAVQAGKLLA   86 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqT-SvpgIYAiGDva~g~~~--la~vA~~qG~vAA   86 (332)
                      .++++.+++=+.--.++. +.  |.+..+ .| ..|++.||.  +|. ..||||+||||. +.|.  .+..+..|..++-
T Consensus       280 t~ei~yslLHv~Ppms~p-e~--l~~s~~-ad-ktGfvdVD~~TlQs~kypNVFgiGDc~-n~PnsKTaAAvaaq~~vv~  353 (446)
T KOG3851|consen  280 TEEIEYSLLHVTPPMSTP-EV--LANSDL-AD-KTGFVDVDQSTLQSKKYPNVFGIGDCM-NLPNSKTAAAVAAQSPVVD  353 (446)
T ss_pred             eeEEeeeeeeccCCCCCh-hh--hhcCcc-cC-cccceecChhhhccccCCCceeecccc-CCCchhhHHHHHhcCchhh
Confidence            356777776666554432 22  344443 35 689999998  775 799999999998 4442  2233345666676


Q ss_pred             HHHh
Q psy3825          87 ARLY   90 (332)
Q Consensus        87 ~nI~   90 (332)
                      +|+.
T Consensus       354 ~nl~  357 (446)
T KOG3851|consen  354 KNLT  357 (446)
T ss_pred             hhHH
Confidence            7765

>PRK07804 L-aspartate oxidase; Provisional

Probab=94.10  E-value=0.064  Score=55.76  Aligned_cols=46  Identities=20%  Similarity=0.313  Sum_probs=33.2

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCC----CCCCchhHH----HHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLH----EKPELTPVA----VQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~----g~~~la~vA----~~qG~vAA~nI~G   91 (332)
                      -|.|.||+ ++|++||+||+|||+.    |...+...+    .-.|+.+++++..
T Consensus       357 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~  411 (541)
T PRK07804        357 CGGVVTDVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAA  411 (541)
T ss_pred             CCCEEECCCCcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            47799999 9999999999999973    223444443    4456777777653

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=93.75  E-value=0.1  Score=54.89  Aligned_cols=46  Identities=24%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G   91 (332)
                      .|.|.||. +||++||+||+|||+.++    ..+    ...|+-.|++|++++..
T Consensus       358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~  412 (582)
T PRK09231        358 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAE  412 (582)
T ss_pred             CCCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            57799999 999999999999997311    112    23456678888888764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.39  E-value=0.09  Score=54.54  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=34.7

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCCCC---CCc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLHEK---PEL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~g~---~~l----a~vA~~qG~vAA~nI~G   91 (332)
                      .|.|.||+ +||++||+||+|+++.+.   ..+    ...|.-.|++|++++..
T Consensus       348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~  401 (543)
T PRK06263        348 MGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAK  401 (543)
T ss_pred             cCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHH
Confidence            46799999 999999999999997321   111    23567788999988864

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=93.22  E-value=0.088  Score=56.07  Aligned_cols=38  Identities=16%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             C-CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHHh
Q psy3825          53 N-EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        53 e-lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI~   90 (332)
                      . .+|++||+||+|||+. +...++..+..+|.+++.++.
T Consensus       400 ~~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~  439 (614)
T TIGR02061       400 YNRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAV  439 (614)
T ss_pred             cCCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHH
Confidence            6 8899999999999974 223477788888888888775

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK09077 L-aspartate oxidase; Provisional

Probab=92.97  E-value=0.13  Score=53.49  Aligned_cols=46  Identities=15%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .||++||+||+|+|+.++    ..+    ...|.-.|++|++++..
T Consensus       353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~  407 (536)
T PRK09077        353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS  407 (536)
T ss_pred             cCCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence            46799999 999999999999997311    112    23556778899988864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=92.49  E-value=0.15  Score=53.68  Aligned_cols=46  Identities=22%  Similarity=0.198  Sum_probs=34.3

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCCCC----C----CchhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLHEK----P----ELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~g~----~----~la~vA~~qG~vAA~nI~G   91 (332)
                      .|.|.||+ .+|++||+||+|+|+.++    .    .....|.-.|++|++++..
T Consensus       357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~  411 (580)
T TIGR01176       357 MGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAE  411 (580)
T ss_pred             CCCeeECcCcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence            46799999 999999999999996311    1    1224566778888888764

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08071 L-aspartate oxidase; Provisional

Probab=92.15  E-value=0.18  Score=52.03  Aligned_cols=45  Identities=22%  Similarity=0.378  Sum_probs=33.2

Q ss_pred             CeeecCC-CCCCCCcEEEecccCCCC----CCch----hHHHHHHHHHHHHHhC
Q psy3825          47 AKIDSDN-EQTNIPNVFAVGDVLHEK----PELT----PVAVQAGKLLAARLYG   91 (332)
Q Consensus        47 G~I~VDe-lqTSvpgIYAiGDva~g~----~~la----~vA~~qG~vAA~nI~G   91 (332)
                      |.|.||. .||++||+||+|+|+.++    ..+.    ..+.-.|+.|++++..
T Consensus       333 GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~  386 (510)
T PRK08071        333 GGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILT  386 (510)
T ss_pred             CCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence            6799999 999999999999997311    2233    3445567888888754

>TIGR00551 nadB L-aspartate oxidase

Probab=92.15  E-value=0.2  Score=51.31  Aligned_cols=46  Identities=22%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCCCC----CCch----hHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLHEK----PELT----PVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~g~----~~la----~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .||++||+||+|+|+.++    ..+.    ..|.-.|+.|++++..
T Consensus       333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~  387 (488)
T TIGR00551       333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR  387 (488)
T ss_pred             cCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence            46799999 999999999999996311    1222    3456678888888864

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=91.91  E-value=0.19  Score=52.24  Aligned_cols=45  Identities=18%  Similarity=0.166  Sum_probs=33.9

Q ss_pred             CCeeecCC-CC----CCCCcEEEecccCCCCC--------CchhHHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQ----TNIPNVFAVGDVLHEKP--------ELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lq----TSvpgIYAiGDva~g~~--------~la~vA~~qG~vAA~nI~   90 (332)
                      -|.|.||. +|    |++||+||+|+|+.++.        .....|+-.|++|++++.
T Consensus       342 ~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa  399 (566)
T TIGR01812       342 MGGIPTDYTGRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAA  399 (566)
T ss_pred             CCCeEECcCcccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHH
Confidence            47799999 99    99999999999973121        123456677888888875

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=91.87  E-value=0.15  Score=52.86  Aligned_cols=42  Identities=21%  Similarity=0.206  Sum_probs=36.4

Q ss_pred             eeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          48 KIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        48 ~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      +|.||+ ++|+++|+|++||.+ |-..-...|...|..+|+.|+
T Consensus       438 ri~~d~~~~t~i~gLy~aGdGA-G~argI~~Aaa~Gi~~A~~i~  480 (486)
T COG2509         438 RIKVDEDLSTSIKGLYPAGDGA-GLARGIVSAAADGIKAAEGIA  480 (486)
T ss_pred             eEeecccceeeecceEEccccc-cccchhHHHhhhhHHHHHHHH
Confidence            689999 999999999999999 766667788888988888876

>PRK08401 L-aspartate oxidase; Provisional

Probab=91.72  E-value=0.24  Score=50.46  Aligned_cols=46  Identities=22%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCC-C---CCCch----hHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLH-E---KPELT----PVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~-g---~~~la----~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .||++||+||+|+|+. |   ...+.    ..+.-.|+.|++++..
T Consensus       310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~  364 (466)
T PRK08401        310 IGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR  364 (466)
T ss_pred             CCCEEECCCCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            47799999 9999999999999973 2   12223    2345668888888864

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=91.31  E-value=0.24  Score=52.48  Aligned_cols=45  Identities=24%  Similarity=0.266  Sum_probs=32.6

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCCC---CCCch----hHHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLHE---KPELT----PVAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~g---~~~la----~vA~~qG~vAA~nI~   90 (332)
                      .|.|.||. .+|++||+||+|+|+.+   ...+.    ..+.-.|++|+.++.
T Consensus       370 ~gG~~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa  422 (603)
T TIGR01811       370 MGGLWVDYDQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTI  422 (603)
T ss_pred             CCCeeECCCCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHH
Confidence            37799999 99999999999999731   11222    345566777877765

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=91.08  E-value=0.51  Score=48.42  Aligned_cols=82  Identities=15%  Similarity=0.031  Sum_probs=56.5

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccC-ceeecCCCee-ecC-C-CCCC-CCcEEEecccCCCCCCchhHHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAG-VKVIPENAKI-DSD-N-EQTN-IPNVFAVGDVLHEKPELTPVAVQ   80 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aG-l~ld~e~G~I-~VD-e-lqTS-vpgIYAiGDva~g~~~la~vA~~   80 (332)
                      .+.+.||+++++|.||+|+|.+++..+|  +..| +.++ + +.+ ..= . +-.. .|++..+|=..  .....+.+..
T Consensus       266 ~V~f~DG~~~~~D~Ii~~TGy~~~~pfL--~~~~~i~v~-~-~~v~~Ly~~~f~~~~~p~LafiG~~~--~~~~f~~~E~  339 (461)
T PLN02172        266 SIVFKNGKVVYADTIVHCTGYKYHFPFL--ETNGYMRID-E-NRVEPLYKHVFPPALAPGLSFIGLPA--MGIQFVMFEI  339 (461)
T ss_pred             eEEECCCCCccCCEEEECCcCCcccccc--CcccceeeC-C-CcchhhHHhhcCCCCCCcEEEEeccc--cccCchhHHH
Confidence            3677888899999999999999999984  3322 3343 2 222 111 1 2233 48999999543  2345678889


Q ss_pred             HHHHHHHHHhCCC
Q psy3825          81 AGKLLAARLYGNG   93 (332)
Q Consensus        81 qG~vAA~nI~G~~   93 (332)
                      |++.+|.-+.|..
T Consensus       340 Qa~~~a~v~sG~~  352 (461)
T PLN02172        340 QSKWVAAVLSGRV  352 (461)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999998853

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.74  E-value=0.32  Score=50.95  Aligned_cols=45  Identities=18%  Similarity=0.220  Sum_probs=33.0

Q ss_pred             CCeeecCC-CCCC-CCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQTN-IPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqTS-vpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~   90 (332)
                      -|.|.||. .||+ +||+||+|+|+.++    ..+    ...+.-.|++|++++.
T Consensus       346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa  400 (566)
T PRK06452        346 MGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVV  400 (566)
T ss_pred             cCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence            47799999 9985 99999999997311    112    2355677888888875

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=90.71  E-value=0.27  Score=51.38  Aligned_cols=46  Identities=28%  Similarity=0.445  Sum_probs=36.0

Q ss_pred             CeeecCC-CCCCCCcEEEecccCC----CCCCchhHHHH----HHHHHHHHHhCC
Q psy3825          47 AKIDSDN-EQTNIPNVFAVGDVLH----EKPELTPVAVQ----AGKLLAARLYGN   92 (332)
Q Consensus        47 G~I~VDe-lqTSvpgIYAiGDva~----g~~~la~vA~~----qG~vAA~nI~G~   92 (332)
                      |.|.||. .|||+|++||+|.|+.    |...|++.+..    -|..+|++|.+.
T Consensus       342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~  396 (518)
T COG0029         342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGR  396 (518)
T ss_pred             ccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence            7799999 9999999999999986    33456665544    466678888764

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.69  E-value=0.27  Score=51.82  Aligned_cols=45  Identities=24%  Similarity=0.285  Sum_probs=33.2

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCCC---CCCch----hHHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLHE---KPELT----PVAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~g---~~~la----~vA~~qG~vAA~nI~   90 (332)
                      -|.|.||. .+|++||+||+|+|+.+   ...+.    ..|.-.|++|++++.
T Consensus       355 ~GGi~vd~~~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa  407 (589)
T PRK08641        355 MGGLWVDYDQMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAV  407 (589)
T ss_pred             CCCeEECCCCCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHH
Confidence            37799999 99999999999999732   11222    345667888887775

>PRK07512 L-aspartate oxidase; Provisional

Probab=90.57  E-value=0.33  Score=50.23  Aligned_cols=46  Identities=24%  Similarity=0.321  Sum_probs=33.7

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCC-C---CCCch----hHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLH-E---KPELT----PVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~-g---~~~la----~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .+|++||+||+|+|+. |   ...+.    ..|.-.|++|++++..
T Consensus       341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~  395 (513)
T PRK07512        341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAG  395 (513)
T ss_pred             cCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            47799999 9999999999999973 2   11222    2445678888888764

>KOG4716|consensus

Probab=90.22  E-value=0.094  Score=53.02  Aligned_cols=23  Identities=22%  Similarity=0.111  Sum_probs=19.5

Q ss_pred             CCeeEEEcCEEEEccCccccCcc
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEE   32 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~   32 (332)
                      ++.+.+.++.+++|+|-||.-..
T Consensus       155 gk~~~~ta~~fvIatG~RPrYp~  177 (503)
T KOG4716|consen  155 GKERFLTAENFVIATGLRPRYPD  177 (503)
T ss_pred             CceEEeecceEEEEecCCCCCCC
Confidence            45677999999999999998765

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.85  E-value=0.46  Score=49.77  Aligned_cols=46  Identities=15%  Similarity=0.211  Sum_probs=33.7

Q ss_pred             CCeeecCC-CCCC------CCcEEEecccCCCCC----Cc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTN------IPNVFAVGDVLHEKP----EL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTS------vpgIYAiGDva~g~~----~l----a~vA~~qG~vAA~nI~G   91 (332)
                      .|.|.||. .||+      +||+||+|+|+.++.    .+    ...|+-.|++|++++..
T Consensus       352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~  412 (577)
T PRK06069        352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAE  412 (577)
T ss_pred             CCCceECCCCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            47799999 9998      999999999973121    11    23456778888888753

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.58  E-value=0.51  Score=50.38  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             CeeecCC-CCCCCCcEEEecccCC
Q psy3825          47 AKIDSDN-EQTNIPNVFAVGDVLH   69 (332)
Q Consensus        47 G~I~VDe-lqTSvpgIYAiGDva~   69 (332)
                      |.|.||. .+|++||+||+|+|+.
T Consensus       407 GGi~vd~~~~T~i~GLyAaGE~~~  430 (640)
T PRK07573        407 GGLWVDYNLMSTIPGLFVIGEANF  430 (640)
T ss_pred             CCEEECCCCccccCCEEECccccc
Confidence            6799999 9999999999999974

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.47  E-value=0.49  Score=50.31  Aligned_cols=46  Identities=15%  Similarity=0.237  Sum_probs=32.7

Q ss_pred             CCeeecCC-C-CCCCCcEEEecccCCC---CCCc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-E-QTNIPNVFAVGDVLHE---KPEL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-l-qTSvpgIYAiGDva~g---~~~l----a~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. . +|++||+||+|+|+.+   ...+    ...|.-.|++|++++..
T Consensus       391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~  445 (626)
T PRK07803        391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAAD  445 (626)
T ss_pred             cCCEEEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHH
Confidence            47799998 5 5999999999999742   1112    23556678888877753

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=88.09  E-value=0.99  Score=47.35  Aligned_cols=84  Identities=12%  Similarity=0.103  Sum_probs=49.2

Q ss_pred             ceeecCCeeEE-EcCEEEEccCccccCccccccccCceeecCCCeeecCC--CC--CCCCcEEEecccCCCCCCchhHHH
Q psy3825           5 TGASMDKVFED-TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQ--TNIPNVFAVGDVLHEKPELTPVAV   79 (332)
Q Consensus         5 ~~v~~~dg~~I-~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lq--TSvpgIYAiGDva~g~~~la~vA~   79 (332)
                      +++.++||+++ ++|.||+|||.+.+..+|.  +.-++..  ++.+..-.  +-  -..|++..+|=+. ......+.+.
T Consensus       308 ~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~--~~~~~~~--~~~~~LYk~vfp~~~~~ptLafIG~~~-~~g~~fp~~E  382 (531)
T PF00743_consen  308 NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLD--ESLIKVD--DNRVRLYKHVFPPNLDHPTLAFIGLVQ-PFGSIFPIFE  382 (531)
T ss_dssp             SEEEETTSEEEEE-SEEEE---EE---TTB---TTTT-S---SSSSSEETTTEETETTSTTEEESS-SB-SSS-HHHHHH
T ss_pred             ccccccccccccccccccccccccccccccc--ccccccc--ccccccccccccccccccccccccccc-cccccccccc
Confidence            46788898876 6999999999999988854  3334443  33333323  21  2458899999664 2223467899


Q ss_pred             HHHHHHHHHHhCCC
Q psy3825          80 QAGKLLAARLYGNG   93 (332)
Q Consensus        80 ~qG~vAA~nI~G~~   93 (332)
                      .||+.+|.-+.|..
T Consensus       383 lQArw~a~v~sG~~  396 (531)
T PF00743_consen  383 LQARWAARVFSGRV  396 (531)
T ss_dssp             HHHHHHHHHHTTSS
T ss_pred             cccccccccccccc
Confidence            99999999998753

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=87.66  E-value=0.73  Score=49.45  Aligned_cols=45  Identities=16%  Similarity=0.265  Sum_probs=32.1

Q ss_pred             CCeeecCC-CCC-CCCcEEEecccCCCC----CCch----hHHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQT-NIPNVFAVGDVLHEK----PELT----PVAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqT-SvpgIYAiGDva~g~----~~la----~vA~~qG~vAA~nI~   90 (332)
                      -|.|.||. .+| ++||+||+|+|+.++    ..+.    ..++-.|++|++++.
T Consensus       372 mGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa  426 (657)
T PRK08626        372 MGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVA  426 (657)
T ss_pred             cCCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence            36799999 999 599999999997311    1222    345567777777765

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=87.57  E-value=0.67  Score=48.61  Aligned_cols=46  Identities=15%  Similarity=0.126  Sum_probs=33.3

Q ss_pred             CCeeecCC-CCC------CCCcEEEecccCCCCC--------CchhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQT------NIPNVFAVGDVLHEKP--------ELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqT------SvpgIYAiGDva~g~~--------~la~vA~~qG~vAA~nI~G   91 (332)
                      .|.|.||. .||      ++||+||+|+|+.++.        .....|.-.|++|++++..
T Consensus       351 ~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~  411 (575)
T PRK05945        351 MGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAE  411 (575)
T ss_pred             CCCeeECCCceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            46799998 876      7999999999973121        1224566778888888764

>PRK07395 L-aspartate oxidase; Provisional

Probab=87.52  E-value=0.7  Score=48.50  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCC----CCCCchh----HHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLH----EKPELTP----VAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~----g~~~la~----vA~~qG~vAA~nI~   90 (332)
                      -|.|.||. .||++||+||+|+|+.    |...+..    .+.-.|+.++..+.
T Consensus       347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~  400 (553)
T PRK07395        347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLEL  400 (553)
T ss_pred             CCCeeECCCCcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            47799999 9999999999999973    2223343    33445777777764

>PLN02815 L-aspartate oxidase

Probab=87.21  E-value=0.71  Score=49.00  Aligned_cols=45  Identities=16%  Similarity=0.181  Sum_probs=32.7

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCC-C---CCCch----hHHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLH-E---KPELT----PVAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~-g---~~~la----~vA~~qG~vAA~nI~   90 (332)
                      -|.|.||. .||++||+||+|+|+. +   ...+.    ..+.-.|+.|++++.
T Consensus       377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa  430 (594)
T PLN02815        377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSI  430 (594)
T ss_pred             CCCeeECCCCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            47799999 9999999999999973 1   11233    344556777777765

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=87.09  E-value=0.72  Score=48.35  Aligned_cols=46  Identities=17%  Similarity=0.181  Sum_probs=31.7

Q ss_pred             CCeeecCC-CC---------CCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQ---------TNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lq---------TSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .|         |++||+||+|+|+.++    ..+    ...|.-.|++|++++..
T Consensus       331 ~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~  394 (565)
T TIGR01816       331 MGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAE  394 (565)
T ss_pred             cCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence            35677777 66         6799999999997311    112    23456778888888763

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=87.02  E-value=0.79  Score=48.21  Aligned_cols=46  Identities=15%  Similarity=0.129  Sum_probs=32.1

Q ss_pred             CCeeecCC-CC------CCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQ------TNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lq------TSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .|      |++||+||+|+|+.++    ..+    ...|.-.|++|++++..
T Consensus       356 ~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~  416 (583)
T PRK08205        356 MGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAE  416 (583)
T ss_pred             CCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence            46688887 77      6899999999997311    112    23456678888888763

>PRK06175 L-aspartate oxidase; Provisional

Probab=85.10  E-value=1.2  Score=45.04  Aligned_cols=46  Identities=22%  Similarity=0.241  Sum_probs=34.1

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCC-C---CCCch----hHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLH-E---KPELT----PVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~-g---~~~la----~vA~~qG~vAA~nI~G   91 (332)
                      .|.|.||. .||++||+||+|.++. +   ...+.    ..+.-.|++|++++..
T Consensus       331 ~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~  385 (433)
T PRK06175        331 MGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINS  385 (433)
T ss_pred             cCCEEECCCccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence            57799999 9999999999999973 2   11233    3455678888888753

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=84.98  E-value=1  Score=47.57  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=33.4

Q ss_pred             CCeeecCC-CCC---------CCCcEEEecccCCCCC----Cc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQT---------NIPNVFAVGDVLHEKP----EL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqT---------SvpgIYAiGDva~g~~----~l----a~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .||         ++||+||+|+|+.++.    .+    ...|.-.|++|++++..
T Consensus       361 ~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~  424 (591)
T PRK07057        361 MGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVD  424 (591)
T ss_pred             CCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence            46799998 887         6999999999973121    12    24567778888888864

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=84.47  E-value=1.2  Score=47.15  Aligned_cols=46  Identities=22%  Similarity=0.228  Sum_probs=31.9

Q ss_pred             CCeeecCC-CC----------CCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQ----------TNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lq----------TSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .|          |++||+||+|+|+.++    ..+    ...|.-.|++|++++..
T Consensus       362 ~GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~  426 (598)
T PRK09078        362 MGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAE  426 (598)
T ss_pred             CCCcccCCCceeecccccccCCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHH
Confidence            35677777 65          5799999999997311    112    23566778888888764

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=84.36  E-value=1.1  Score=47.11  Aligned_cols=44  Identities=27%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             CeeecCC-CCC----------CCCcEEEecccCCCCC----Cc----hhHHHHHHHHHHHHHh
Q psy3825          47 AKIDSDN-EQT----------NIPNVFAVGDVLHEKP----EL----TPVAVQAGKLLAARLY   90 (332)
Q Consensus        47 G~I~VDe-lqT----------SvpgIYAiGDva~g~~----~l----a~vA~~qG~vAA~nI~   90 (332)
                      |.|.||. .+|          ++||+||+|+|+.++.    .+    ...|.-.|++|++++.
T Consensus       340 GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa  402 (570)
T PRK05675        340 GGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLE  402 (570)
T ss_pred             CCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHH
Confidence            6677877 665          7999999999973111    12    2456677888888875

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=83.86  E-value=1.4  Score=46.56  Aligned_cols=45  Identities=24%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             CCeeecCC-CC----------CCCCcEEEecccCCCC----CCc----hhHHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQ----------TNIPNVFAVGDVLHEK----PEL----TPVAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lq----------TSvpgIYAiGDva~g~----~~l----a~vA~~qG~vAA~nI~   90 (332)
                      -|.|.||. .|          |++||+||+|+|+.++    ..+    ...|+-.|++|++++.
T Consensus       357 ~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa  420 (588)
T PRK08958        357 MGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQ  420 (588)
T ss_pred             CCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHH
Confidence            35677776 66          5799999999997312    122    2456677888888875

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=83.77  E-value=1.1  Score=45.15  Aligned_cols=46  Identities=15%  Similarity=0.245  Sum_probs=33.0

Q ss_pred             CCeeecCC-CCC------CCCcEEEecccCCC-CC-------CchhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQT------NIPNVFAVGDVLHE-KP-------ELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqT------SvpgIYAiGDva~g-~~-------~la~vA~~qG~vAA~nI~G   91 (332)
                      .|.|.||+ +|+      .+||+||+|.++.+ ..       .-...++-.|++|++++..
T Consensus       399 ~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~  459 (466)
T PRK08274        399 YLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAAR  459 (466)
T ss_pred             cccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHH
Confidence            46688888 776      69999999999732 10       1234557789999988864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=83.72  E-value=1.4  Score=47.10  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=32.0

Q ss_pred             CCeeecCC-CC----------CCCCcEEEecccCCCC----CC----chhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQ----------TNIPNVFAVGDVLHEK----PE----LTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lq----------TSvpgIYAiGDva~g~----~~----la~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .|          |++||+||+|+|+.++    ..    ....|+-.|++|++++..
T Consensus       400 ~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~  464 (635)
T PLN00128        400 MGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE  464 (635)
T ss_pred             cCCcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence            36677776 66          5799999999997311    11    234566778888888764

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=83.03  E-value=2.7  Score=43.29  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=53.3

Q ss_pred             cCCeeEEEcCEEEEccCccccCc-cccccccCceeecCCCeeecCC-CCC--C---CCcEEEecccCC----CCCCchhH
Q psy3825           9 MDKVFEDTYDTVLMAIGRRALTE-ETAVSNAGVKVIPENAKIDSDN-EQT--N---IPNVFAVGDVLH----EKPELTPV   77 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~PNt~-~L~Le~aGl~ld~e~G~I~VDe-lqT--S---vpgIYAiGDva~----g~~~la~v   77 (332)
                      +++..++++|.||+|||.+.... +|..-.--+..+ +.|...|+. .+.  .   .-.||+.|=...    +.+.|.-.
T Consensus       321 ~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d-~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~  399 (436)
T COG3486         321 TGELETVETDAVILATGYRRAVPSFLEGLADRLQWD-DDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLG  399 (436)
T ss_pred             CCCceEEEeeEEEEecccccCCchhhhhHHHhhccc-ccCCeEecCceeeecCCCCcceEEEecccccccccCCccchHH
Confidence            45677899999999999984444 432111135667 788899987 432  2   236999986653    34555555


Q ss_pred             HHHHHHHHHHHHhCCC
Q psy3825          78 AVQAGKLLAARLYGNG   93 (332)
Q Consensus        78 A~~qG~vAA~nI~G~~   93 (332)
                      |.+.+ ..++.++|..
T Consensus       400 a~Raa-~I~~~L~g~~  414 (436)
T COG3486         400 AWRAA-VILNSLLGRE  414 (436)
T ss_pred             HHHHH-HHHHHHhCcC
Confidence            66654 4556777754

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=81.97  E-value=1.5  Score=46.70  Aligned_cols=46  Identities=17%  Similarity=0.177  Sum_probs=32.6

Q ss_pred             CCeeecCC-CCC----------CCCcEEEecccCCCC----CC----chhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQT----------NIPNVFAVGDVLHEK----PE----LTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqT----------SvpgIYAiGDva~g~----~~----la~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .||          ++||+||+|+|+.++    ..    ....+.-.|++|++++..
T Consensus       379 ~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~  443 (617)
T PTZ00139        379 MGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVME  443 (617)
T ss_pred             cCCeEEcCCceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHH
Confidence            36688887 775          699999999997311    11    234566778888888864

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=80.06  E-value=4.7  Score=41.47  Aligned_cols=41  Identities=27%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             eecCC-CCC-----CCCcEEEecccCCCCCCc-----hhHHHHHHHHHHHHH
Q psy3825          49 IDSDN-EQT-----NIPNVFAVGDVLHEKPEL-----TPVAVQAGKLLAARL   89 (332)
Q Consensus        49 I~VDe-lqT-----SvpgIYAiGDva~g~~~l-----a~vA~~qG~vAA~nI   89 (332)
                      |.||+ +|.     ..+|+||+|-+..|....     .-+|+..|-.||++|
T Consensus       367 V~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i  418 (419)
T TIGR03378       367 VKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQI  418 (419)
T ss_pred             ceEccccCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhh
Confidence            88898 883     389999999998432211     237888888888876

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		5e-64
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		1e-63
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		2e-61
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		1e-55
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		2e-55
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		6e-55
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		7e-55
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		1e-54
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		7e-54
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		1e-53
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		2e-53
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		3e-46
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		4e-45
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		4e-45
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		2e-25
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		7e-12
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		3e-18
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		6e-09
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		2e-16
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		9e-12
1gsn_A	478	Human Glutathione Reductase Modified By Dinitrosogl		3e-16
1gsn_A	478	Human Glutathione Reductase Modified By Dinitrosogl		1e-07
3djg_X	477	Catalytic Cycle Of Human Glutathione Reductase Near		3e-16
3djg_X	477	Catalytic Cycle Of Human Glutathione Reductase Near		6e-09
1bwc_A	478	Structure Of Human Glutathione Reductase Complexed		3e-16
1bwc_A	478	Structure Of Human Glutathione Reductase Complexed		6e-09
2aaq_A	479	Crystal Structure Analysis Of The Human Glutahione		3e-16
2aaq_A	479	Crystal Structure Analysis Of The Human Glutahione		6e-09
1k4q_A	463	Human Glutathione Reductase Inactivated By Peroxyni		3e-16
1k4q_A	463	Human Glutathione Reductase Inactivated By Peroxyni		6e-09
1xan_A	461	Human Glutathione Reductase In Complex With A Xanth		3e-16
1xan_A	461	Human Glutathione Reductase In Complex With A Xanth		6e-09
1grg_A	478	Substrate Binding And Catalysis By Glutathione Redu		3e-16
1grg_A	478	Substrate Binding And Catalysis By Glutathione Redu		6e-09
1dnc_A	478	Human Glutathione Reductase Modified By Diglutathio		3e-16
1dnc_A	478	Human Glutathione Reductase Modified By Diglutathio		6e-09
1grt_A	478	Human Glutathione Reductase A34eR37W MUTANT Length		3e-16
1grt_A	478	Human Glutathione Reductase A34eR37W MUTANT Length		7e-09
2grt_A	461	Human Glutathione Reductase A34e, R37w Mutant, Oxid		3e-16
2grt_A	461	Human Glutathione Reductase A34e, R37w Mutant, Oxid		6e-09
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		3e-15
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		3e-09
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		4e-15
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		3e-09
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		2e-14
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		3e-04
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		2e-14
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		3e-04
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		3e-13
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		2e-07
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		9e-13
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		5e-10
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		2e-12
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		3e-05
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-12
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		3e-05
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		2e-12
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		3e-05
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		2e-12
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		3e-05
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		8e-12
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		8e-07
1tyt_A	487	Crystal And Molecular Structure Of Crithidia Fascic		2e-11
1tyt_A	487	Crystal And Molecular Structure Of Crithidia Fascic		5e-06
1typ_A	487	Substrate Interactions Between Trypanothione Reduct		2e-11
1typ_A	487	Substrate Interactions Between Trypanothione Reduct		5e-06
1fea_A	490	Unliganded Crithidia Fasciculata Trypanothione Redu		3e-11
1fea_A	490	Unliganded Crithidia Fasciculata Trypanothione Redu		5e-06
2tpr_A	490	X-ray Structure Of Trypanothione Reductase From Cri		3e-11
2tpr_A	490	X-ray Structure Of Trypanothione Reductase From Cri		4e-06
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		1e-10
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		5e-06
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		1e-10
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		5e-06
1lpf_A	477	Three-Dimensional Structure Of Lipoamide Dehydrogen		1e-07
1lpf_A	477	Three-Dimensional Structure Of Lipoamide Dehydrogen		1e-04
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-07
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		3e-07
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		7e-04
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		3e-07
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		8e-04
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		4e-07
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		8e-04
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		8e-06
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		2e-04
3lad_A	476	Refined Crystal Structure Of Lipoamide Dehydrogenas		4e-05
3lad_A	476	Refined Crystal Structure Of Lipoamide Dehydrogenas		5e-05
2eq6_A	464	Crystal Structure Of Lipoamide Dehydrogenase From T		5e-05
1jeh_A	478	Crystal Structure Of Yeast E3, Lipoamide Dehydrogen		8e-05
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		3e-04
1zk7_A	467	Crystal Structure Of Tn501 Mera Length = 467		9e-04

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score =  241 bits (615), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 138/313 (44%), Positives = 169/313 (53%), Gaps = 99/313 (31%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           ED YDTVL AIGR+ L ++  + NAGV V  +   +DS  E TN+ N++AVGD+++ KPE
Sbjct: 275 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDS-QEATNVANIYAVGDIIYGKPE 333
Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVAV AG+LLA RLYG  T +MDY++VATTVFTPLEY CVGLSEE A + +GAD +E+
Sbjct: 334 LTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEV 393
Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
                                                             +H YYKPTEF
Sbjct: 394 --------------------------------------------------FHGYYKPTEF 403
Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
           FIPQ++ + CYL                                                
Sbjct: 404 FIPQKSVRYCYL------------------------------------------------ 415
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313
           K V ER   Q+V G+H+IGP AGEVIQG+AAA+K GLT  TL +TVGIHPT AEEFTR+ 
Sbjct: 416 KAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLA 475
Query: 314 ITKRSGEDPTPQS 326
           ITKRSG DPTP S
Sbjct: 476 ITKRSGLDPTPAS 488

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/311 (44%), Positives = 168/311 (54%), Gaps = 99/311 (31%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           ED YDTVL AIGR+ L ++  + NAGV V  +   +DS  E TN+ N++AVGD+++ KPE
Sbjct: 271 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDS-QEATNVANIYAVGDIIYGKPE 329
Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVAV AG+LLA RLYG  T +MDY++VATTVFTPLEY CVGLSEE A + +GAD +E+
Sbjct: 330 LTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEV 389
Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
                                                             +H YYKPTEF
Sbjct: 390 --------------------------------------------------FHGYYKPTEF 399
Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
           FIPQ++ + CYL                                                
Sbjct: 400 FIPQKSVRYCYL------------------------------------------------ 411
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313
           K V ER   Q+V G+H+IGP AGEVIQG+AAA+K GLT  TL +TVGIHPT AEEFTR+ 
Sbjct: 412 KAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLA 471
Query: 314 ITKRSGEDPTP 324
           ITKRSG DPTP
Sbjct: 472 ITKRSGLDPTP 482

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score =  233 bits (593), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/308 (43%), Positives = 165/308 (53%), Gaps = 99/308 (32%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           ED YDTVL AIGR+ L ++  + NAGV V  +   +DS  E TN+ N++AVGD+++ KPE
Sbjct: 275 EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDS-QEATNVANIYAVGDIIYGKPE 333
Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVAV AG+LLA RLYG  T +MDY++VATTVFTPLEY CVGLSEE A + +GAD +E+
Sbjct: 334 LTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEV 393
Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
                                                             +H YYKPTEF
Sbjct: 394 --------------------------------------------------FHGYYKPTEF 403
Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
           FIPQ++ + CYL                                                
Sbjct: 404 FIPQKSVRYCYL------------------------------------------------ 415
Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 313
           K V ER   Q+V G+H+IGP AGEVIQG+AAA+K GLT  TL +TVGIHPT AEEFTR+ 
Sbjct: 416 KAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLA 475
Query: 314 ITKRSGED 321
           ITKRSG D
Sbjct: 476 ITKRSGLD 483

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score =  213 bits (543), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 163/326 (50%), Gaps = 99/326 (30%)
Query: 4   ATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNVF 62
           A   + ++  ED ++TVL+A+GR + T    +   GVK+  +  KI  +D EQTN+P ++
Sbjct: 271 AKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIY 330
Query: 63  AVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
           A+GD+L  K ELTPVA+QAG+LLA RLYG  T + DY NV TTVFTPLEYGC GLSEEKA
Sbjct: 331 AIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEEKA 390
Query: 123 EELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKV 182
            E +G +N+E+                                                 
Sbjct: 391 VEKFGEENIEV------------------------------------------------- 401
Query: 183 IYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFF 242
            YH+++ P E+ +P R+  +CY K                                    
Sbjct: 402 -YHSFFWPLEWTVPSRDNNKCYAK------------------------------------ 424
Query: 243 IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIH 302
                       V+C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GIH
Sbjct: 425 ------------VICNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIH 472
Query: 303 PTLAEEFTRVTITKRSGEDPTPQSCC 328
           P  AE FT +++TKRSG D     CC
Sbjct: 473 PVCAEIFTTLSVTKRSGGDILQSGCC 498

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/314 (38%), Positives = 158/314 (50%), Gaps = 99/314 (31%)
Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVLHEKPEL 74
           T+DTVL AIGR   T    +  AG+   P+N KI  D  E T++P+++A+GDV   +PEL
Sbjct: 301 TFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPEL 360
Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY 134
           TP A++AGKLLA RL+G  +T MDY NV TTVFTPLEYGCVGLSEE+A  L+G +++E+ 
Sbjct: 361 TPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEV- 419
Query: 135 HAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFF 194
                                                            YHAYYKP EF 
Sbjct: 420 -------------------------------------------------YHAYYKPLEFT 430
Query: 195 IPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLK 254
           +  R+  +CY+K+                                               
Sbjct: 431 VADRDASQCYIKM----------------------------------------------- 443
Query: 255 VVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 314
            VC R  PQ VLG+HF+GPNAGEV QG+A  +KCG ++  +  TVGIHPT +EE  ++ I
Sbjct: 444 -VCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHI 502
Query: 315 TKRSGEDPTPQSCC 328
           +KRSG +PT   CC
Sbjct: 503 SKRSGLEPTVTGCC 516

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score =  211 bits (536), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 119/327 (36%), Positives = 164/327 (50%), Gaps = 99/327 (30%)
Query: 3   IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
           +A   + +++ E  Y+TV++AIGR A T +  +   GVK+  +  KI  +D EQTN+P +
Sbjct: 284 VAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYI 343
Query: 62  FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
           +A+GD+L +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct: 344 YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 403
Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
           A E +G +N+E+                                                
Sbjct: 404 AVEKFGEENIEV------------------------------------------------ 415
Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
             YH+Y+ P E+ IP R+  +CY KI                                  
Sbjct: 416 --YHSYFWPLEWTIPSRDNNKCYAKI---------------------------------- 439
Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
                         +C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GI
Sbjct: 440 --------------ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGI 485
Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSCC 328
           HP  AE FT +++TKRSG       CC
Sbjct: 486 HPVCAEVFTTLSVTKRSGASILQAGCC 512

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score =  210 bits (535), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 119/327 (36%), Positives = 164/327 (50%), Gaps = 99/327 (30%)
Query: 3   IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
           +A   + +++ E  Y+TV++AIGR A T +  +   GVK+  +  KI  +D EQTN+P +
Sbjct: 290 VAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYI 349
Query: 62  FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
           +A+GD+L +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct: 350 YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 409
Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
           A E +G +N+E+                                                
Sbjct: 410 AVEKFGEENIEV------------------------------------------------ 421
Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
             YH+Y+ P E+ IP R+  +CY KI                                  
Sbjct: 422 --YHSYFWPLEWTIPSRDNNKCYAKI---------------------------------- 445
Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
                         +C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GI
Sbjct: 446 --------------ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGI 491
Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSCC 328
           HP  AE FT +++TKRSG       CC
Sbjct: 492 HPVCAEVFTTLSVTKRSGASILQAGCC 518

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 162/325 (49%), Gaps = 99/325 (30%)
Query: 4   ATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNVF 62
           A   + ++  ED ++TVL+A+GR + T    +   GVK+  +  KI  +D EQTN+P ++
Sbjct: 271 AKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIY 330
Query: 63  AVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
           A+GD+L  K ELTPVA+QAG+LLA RLYG  T + DY NV TTVFTPLEYGC GLSEEKA
Sbjct: 331 AIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEEKA 390
Query: 123 EELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKV 182
            E +G +N+E+                                                 
Sbjct: 391 VEKFGEENIEV------------------------------------------------- 401
Query: 183 IYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFF 242
            YH+++ P E+ +P R+  +CY K                                    
Sbjct: 402 -YHSFFWPLEWTVPSRDNNKCYAK------------------------------------ 424
Query: 243 IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIH 302
                       V+C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GIH
Sbjct: 425 ------------VICNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIH 472
Query: 303 PTLAEEFTRVTITKRSGEDPTPQSC 327
           P  AE FT +++TKRSG D     C
Sbjct: 473 PVCAEIFTTLSVTKRSGGDILQSGC 497

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score =  207 bits (527), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 163/326 (50%), Gaps = 99/326 (30%)
Query: 3   IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
           +A   + +++ E  Y+TV++AIGR A T +  +   GVK+  +  KI  +D EQTN+P +
Sbjct: 292 VAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYI 351
Query: 62  FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
           +A+GD+L +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct: 352 YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 411
Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
           A E +G +N+E+                                                
Sbjct: 412 AVEKFGEENIEV------------------------------------------------ 423
Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
             YH+Y+ P E+ IP R+  +CY KI                                  
Sbjct: 424 --YHSYFWPLEWTIPSRDNNKCYAKI---------------------------------- 447
Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
                         +C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GI
Sbjct: 448 --------------ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGI 493
Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSC 327
           HP  AE FT +++TKRSG       C
Sbjct: 494 HPVCAEVFTTLSVTKRSGASILQAGC 519

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/327 (36%), Positives = 163/327 (49%), Gaps = 99/327 (30%)
Query: 3   IATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKID-SDNEQTNIPNV 61
           +A   + +++ E  Y+TV++AIGR A T +  +   GVK+  +  KI  +D EQTN+P +
Sbjct: 290 VAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYI 349
Query: 62  FAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
           +A+GD+L +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEK
Sbjct: 350 YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 409
Query: 122 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLK 181
           A E +G +N+E+                                                
Sbjct: 410 AVEKFGEENIEV------------------------------------------------ 421
Query: 182 VIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF 241
             YH+Y+ P E+ IP R+  +CY KI                                  
Sbjct: 422 --YHSYFWPLEWTIPSRDNNKCYAKI---------------------------------- 445
Query: 242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 301
                         +C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GI
Sbjct: 446 --------------ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGI 491
Query: 302 HPTLAEEFTRVTITKRSGEDPTPQSCC 328
           HP  AE FT +++TKRSG        C
Sbjct: 492 HPVCAEVFTTLSVTKRSGASILQAGSC 518

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 156/309 (50%), Gaps = 99/309 (32%)
Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVLHEKPEL 74
           T+DTVL AIGR   T    +  AG+   P+N KI  D  E T++P+++A+GDV   +PEL
Sbjct: 275 TFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPEL 334
Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY 134
           TP A++AGKLLA RL+G  +T MDY NV TTVFTPLEYGCVGLSEE+A  L+G +++E+ 
Sbjct: 335 TPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEV- 393
Query: 135 HAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFF 194
                                                            YHAYYKP EF 
Sbjct: 394 -------------------------------------------------YHAYYKPLEFT 404
Query: 195 IPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLK 254
           +  R+  +CY+K+                                               
Sbjct: 405 VADRDASQCYIKM----------------------------------------------- 417
Query: 255 VVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 314
            VC R  PQ VLG+HF+GPNAGEV QG+A  +KCG ++  +  TVGIHPT +EE  ++ I
Sbjct: 418 -VCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHI 476
Query: 315 TKRSGEDPT 323
           +KRSG +PT
Sbjct: 477 SKRSGLEPT 485

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 145/318 (45%), Gaps = 98/318 (30%)
Query: 11  KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
           K FE+ ++TV+ A+GR     +      GVK+      + +D+EQT + NV+A+GD+   
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAG 437
Query: 71  KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
           KP+LTPVA+QAG+ LA RL+   T   DY NVATTVFTPLEYG  GLSEE A E YG  +
Sbjct: 438 KPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKD 497
Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
           +E+                                                  YH+ +KP
Sbjct: 498 IEV--------------------------------------------------YHSNFKP 507
Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
            E+ +  R    CY+K+                                           
Sbjct: 508 LEWTVAHREDNVCYMKL------------------------------------------- 524
Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
                VC ++   +VLG+H +GPNAGE+ QGYA A+K G T    + T+GIHPT +E FT
Sbjct: 525 -----VCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFT 579
Query: 311 RVTITKRSGEDPTPQSCC 328
            + +TK+SG  P    CC
Sbjct: 580 TLHVTKKSGVSPIVSGCC 597

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 144/317 (45%), Gaps = 98/317 (30%)
Query: 11  KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
           K FE+ ++TV+ A+GR     +      GVK+      + +D+EQT + NV+A+GD+   
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAG 437
Query: 71  KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
           KP+LTPVA+QAG+ LA RL+   T   DY NVATTVFTPLEYG  GLSEE A E YG  +
Sbjct: 438 KPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKD 497
Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
           +E+                                                  YH+ +KP
Sbjct: 498 IEV--------------------------------------------------YHSNFKP 507
Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
            E+ +  R    CY+K+                                           
Sbjct: 508 LEWTVAHREDNVCYMKL------------------------------------------- 524
Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
                VC ++   +VLG+H +GPNAGE+ QGYA A+K G T    + T+GIHPT +E FT
Sbjct: 525 -----VCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFT 579
Query: 311 RVTITKRSGEDPTPQSC 327
            + +TK+SG  P    C
Sbjct: 580 TLHVTKKSGVSPIVSGC 596

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 144/317 (45%), Gaps = 98/317 (30%)
Query: 11  KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
           K FE+ ++TV+ A+GR     +      GVK+      + +D+EQT + NV+A+GD+   
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAG 437
Query: 71  KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
           KP+LTPVA+QAG+ LA RL+   T   DY NVATTVFTPLEYG  GLSEE A E YG  +
Sbjct: 438 KPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKD 497
Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
           +E+                                                  YH+ +KP
Sbjct: 498 IEV--------------------------------------------------YHSNFKP 507
Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
            E+ +  R    CY+K+                                           
Sbjct: 508 LEWTVAHREDNVCYMKL------------------------------------------- 524
Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
                VC ++   +VLG+H +GPNAGE+ QGYA A+K G T    + T+GIHPT +E FT
Sbjct: 525 -----VCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFT 579
Query: 311 RVTITKRSGEDPTPQSC 327
            + +TK+SG  P    C
Sbjct: 580 TLHVTKKSGVSPIVSGC 596

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 2/140 (1%)
Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVL 68
           DK  E  YDTVL AIGR+   +   + +  + V   N KI +D+   TNIP++FAVGDV 
Sbjct: 302 DKTSE-LYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVA 360
Query: 69  HEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
              PEL PVA++AG++LA RL+ +    MDY  + T+++TP+EYG  G SEEKA ELYG 
Sbjct: 361 ENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGK 420
Query: 129 DNLEIYHAYYKPTEFFIPQR 148
            N+E++   +   E     R
Sbjct: 421 SNVEVFLQEFNNLEISAVHR 440

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
           C  K+VC +    +V+G H++GPNAGEV QG A A++  +  +  ++ +GIHPT AE F 
Sbjct: 459 CLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAESFM 518
Query: 311 RVTITKRSG 319
            + +T  SG
Sbjct: 519 NLFVTISSG 527

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 88/142 (61%), Gaps = 6/142 (4%)
Query: 15  DTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPEL 74
           D  D ++  IGR++        N G+K+   +  I  + + TN+PN++++GDV+  K EL
Sbjct: 272 DDVDELIWTIGRKSHLG-MGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVG-KVEL 329
Query: 75  TPVAVQAGKLLAARLYG---NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNL 131
           TPVA+ AG+ L+ RL+G       ++DY+NV + +F+  E G +G+SE++A E YG +N+
Sbjct: 330 TPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENI 389
Query: 132 EIYHAYYKPTEF-FIPQRNPQR 152
           ++Y++ +    +  + +++P R
Sbjct: 390 KVYNSKFTAMYYAMLSEKSPTR 411

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 229 LKIYHAYYKPTEF-FIPQRNPQRCYLKVVCERAAP-QKVLGMHFIGPNAGEVIQGYAAAV 286
           +K+Y++ +    +  + +++P R   K+VC  A P +KV+G+H +G ++ E++QG+  A+
Sbjct: 389 IKVYNSKFTAMYYAMLSEKSPTR--YKIVC--AGPNEKVVGLHIVGDSSAEILQGFGVAI 444
Query: 287 KCGLTFETLESTVGIHPTLAEEFT 310
           K G T    ++ V IHPT AEE  
Sbjct: 445 KMGATKADFDNCVAIHPTSAEELV 468

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 5/146 (3%)
Query: 8   SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGD 66
           + D    + +D+V+ A+GR   T +  +  AG++V   N  + +D  Q TN+P V+A+GD
Sbjct: 244 AQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEV-QSNGMVPTDAYQNTNVPGVYALGD 302
Query: 67  VLHEKPELTPVAVQAGKLLAARLY-GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEEL 125
           +   + +LTPVA+ AG+ LA RL+ G    ++DY N+ T VF       VGLSE +A E 
Sbjct: 303 ITG-RDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARER 361
Query: 126 YGADNLEIYHAYYKPTEFFIPQRNPQ 151
            G D L +Y   + P  + + +  P+
Sbjct: 362 LG-DVLTVYETSFTPMRYALNEHGPK 386

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAP-QKVLGMHFIGPNAGEVIQGYAAAVK 287
           L +Y   + P  + + +  P +  +K+VC  A P Q+V+G+H IG  A E++QG+A AVK
Sbjct: 366 LTVYETSFTPMRYALNEHGP-KTAMKLVC--AGPEQRVVGVHVIGDGADEMLQGFAVAVK 422
Query: 288 CGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC 328
            G T    ++TV IHP  AEE   +    R   DP P+   
Sbjct: 423 MGATKADFDNTVAIHPGSAEELVTLKEPVRRPGDPLPEGAA 463

>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 283 DXLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPV 341
Query: 78  AVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 136
           A+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A   YG +N++ Y  
Sbjct: 342 AIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYST 401
Query: 137 YYKPTEFFIPQRNPQRCYLKFI 158
            + P    + +R   +C +K +
Sbjct: 402 SFTPMYHAVTKRK-TKCVMKMV 422

>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K Y   + P    + +R   +C +K+V      +KV+G+H  G    E++QG+A AVK 
Sbjct: 396 VKTYSTSFTPMYHAVTKRK-TKCVMKMVXANK-EEKVVGIHMQGLGCDEMLQGFAVAVKM 453
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T    ++TV IHPT +EE 
Sbjct: 454 GATKADFDNTVAIHPTSSEEL 474

>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 282 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPV 340
Query: 78  AVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 136
           A+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A   YG +N++ Y  
Sbjct: 341 AIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYST 400
Query: 137 YYKPTEFFIPQRNPQRCYLKFI 158
            + P    + +R   +C +K +
Sbjct: 401 SFTPMYHAVTKRK-TKCVMKMV 421

>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K Y   + P    + +R   +C +K+VC     +KV+G+H  G    E++QG+A AVK 
Sbjct: 395 VKTYSTSFTPMYHAVTKRK-TKCVMKMVCANK-EEKVVGIHMQGLGCDEMLQGFAVAVKM 452
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T    ++TV IHPT +EE 
Sbjct: 453 GATKADFDNTVAIHPTSSEEL 473

>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 283 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPV 341
Query: 78  AVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 136
           A+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A   YG +N++ Y  
Sbjct: 342 AIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYST 401
Query: 137 YYKPTEFFIPQRNPQRCYLKFI 158
            + P    + +R   +C +K +
Sbjct: 402 SFTPMYHAVTKRK-TKCVMKMV 422

>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K Y   + P    + +R   +C +K+VC     +KV+G+H  G    E++QG+A AVK 
Sbjct: 396 VKTYSTSFTPMYHAVTKRK-TKCVMKMVCANK-EEKVVGIHMQGLGCDEMLQGFAVAVKM 453
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T    ++TV IHPT +EE 
Sbjct: 454 GATKADFDNTVAIHPTSSEEL 474

>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 284 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPV 342
Query: 78  AVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 136
           A+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A   YG +N++ Y  
Sbjct: 343 AIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYST 402
Query: 137 YYKPTEFFIPQRNPQRCYLKFI 158
            + P    + +R   +C +K +
Sbjct: 403 SFTPMYHAVTKRK-TKCVMKMV 423

>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K Y   + P    + +R   +C +K+VC     +KV+G+H  G    E++QG+A AVK 
Sbjct: 397 VKTYSTSFTPMYHAVTKRK-TKCVMKMVCANK-EEKVVGIHMQGLGCDEMLQGFAVAVKM 454
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T    ++TV IHPT +EE 
Sbjct: 455 GATKADFDNTVAIHPTSSEEL 475

>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 266 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPV 324
Query: 78  AVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 136
           A+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A   YG +N++ Y  
Sbjct: 325 AIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYST 384
Query: 137 YYKPTEFFIPQRNPQRCYLKFI 158
            + P    + +R   +C +K +
Sbjct: 385 SFTPMYHAVTKRK-TKCVMKMV 405

>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K Y   + P    + +R   +C +K+VC     +KV+G+H  G    E++QG+A AVK 
Sbjct: 379 VKTYSTSFTPMYHAVTKRK-TKCVMKMVCANK-EEKVVGIHMQGLGCDEMLQGFAVAVKM 436
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T    ++TV IHPT +EE 
Sbjct: 437 GATKADFDNTVAIHPTSSEEL 457

>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 283 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPV 341
Query: 78  AVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 136
           A+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A   YG +N++ Y  
Sbjct: 342 AIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYST 401
Query: 137 YYKPTEFFIPQRNPQRCYLKFI 158
            + P    + +R   +C +K +
Sbjct: 402 SFTPMYHAVTKRK-TKCVMKMV 422

>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K Y   + P    + +R   +C +K+VC     +KV+G+H  G    E++QG+A AVK 
Sbjct: 396 VKTYSTSFTPMYHAVTKRK-TKCVMKMVCANK-EEKVVGIHMQGLGCDEMLQGFAVAVKM 453
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T    ++TV IHPT +EE 
Sbjct: 454 GATKADFDNTVAIHPTSSEEL 474

>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 283 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPV 341
Query: 78  AVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 136
           A+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A   YG +N++ Y  
Sbjct: 342 AIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYST 401
Query: 137 YYKPTEFFIPQRNPQRCYLKFI 158
            + P    + +R   +C +K +
Sbjct: 402 SFTPMYHAVTKRK-TKCVMKMV 422

>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K Y   + P    + +R   +C +K+VC     +KV+G+H  G    E++QG+A AVK 
Sbjct: 396 VKTYSTSFTPMYHAVTKRK-TKCVMKMVCANK-EEKVVGIHMQGLGCDEMLQGFAVAVKM 453
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T    ++TV IHPT +EE 
Sbjct: 454 GATKADFDNTVAIHPTSSEEL 474

>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 283 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPV 341
Query: 78  AVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 136
           A+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A   YG +N++ Y  
Sbjct: 342 AIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYST 401
Query: 137 YYKPTEFFIPQRNPQRCYLKFI 158
            + P    + +R   +C +K +
Sbjct: 402 SFTPMYHAVTKRK-TKCVMKMV 422

>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K Y   + P    + +R   +C +K+VC     +KV+G+H  G    E++QG+A AVK 
Sbjct: 396 VKTYSTSFTPMYHAVTKRK-TKCVMKMVCANK-EEKVVGIHMQGLGCDEMLQGFAVAVKM 453
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T    ++TV IHPT +EE 
Sbjct: 454 GATKADFDNTVAIHPTSSEEL 474

>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 266 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPV 324
Query: 78  AVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 136
           A+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A   YG +N++ Y  
Sbjct: 325 AIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYST 384
Query: 137 YYKPTEFFIPQRNPQRCYLKFI 158
            + P    + +R   +C +K +
Sbjct: 385 SFTPMYHAVTKRK-TKCVMKMV 405

>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +K Y   + P    + +R   +C +K+VC     +KV+G+H  G    E++QG+A AVK 
Sbjct: 379 VKTYSTSFTPMYHAVTKRK-TKCVMKMVCANK-EEKVVGIHMQGLGCDEMLQGFAVAVKM 436
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T    ++TV IHPT +EE 
Sbjct: 437 GATKADFDNTVAIHPTSSEEL 457

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 7/159 (4%)
Query: 5   TGASMDKVFED----TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPN 60
           T  S+    ED    T D ++ AIGR    +   +  AGVK   +   +    + TNI  
Sbjct: 238 TDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEG 297
Query: 61  VFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQ-MDYQNVATTVFTPLEYGCVGLSE 119
           ++AVGD      ELTPVAV AG+ L+ RL+ N   + +DY N+ T VF+    G VGL+E
Sbjct: 298 IYAVGDNTG-AVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTE 356
Query: 120 EKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
            +A E YG D +++Y + +    +     + Q C +K +
Sbjct: 357 PQAREQYGDDQVKVYKSSFTAM-YTAVTTHRQPCRMKLV 394

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEE 308
           Q C +K+VC   + +K++G+H IG    E++QG+A A+K G T +  ++TV IHPT AEE
Sbjct: 387 QPCRMKLVC-VGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEE 445
Query: 309 F 309
           F
Sbjct: 446 F 446

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 7/159 (4%)
Query: 5   TGASMDKVFED----TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPN 60
           T  S+    ED    T D ++ AIGR    +   +  AGVK   +   +    + TNI  
Sbjct: 238 TDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEG 297
Query: 61  VFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQ-MDYQNVATTVFTPLEYGCVGLSE 119
           ++AVGD      ELTPVAV AG+ L+ RL+ N   + +DY N+ T VF+    G VGL+E
Sbjct: 298 IYAVGDNTG-AVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTE 356
Query: 120 EKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
            +A E YG D +++Y + +    +     + Q C +K +
Sbjct: 357 PQAREQYGDDQVKVYKSSFTAM-YTAVTTHRQPCRMKLV 394

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEE 308
           Q C +K+VC   + +K++G+H IG    E++QG+A A+K G T +  ++TV IHPT AEE
Sbjct: 387 QPCRMKLVC-VGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEE 445
Query: 309 F 309
           F
Sbjct: 446 F 446

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D V+MAIGR   T +  + N GVK+ P+      +  +TN+PN++A+GD+  ++  LTPV
Sbjct: 279 DVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDIT-DRLMLTPV 337
Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAY 137
           A+  G  L   ++GN   + D+  VA+ VF+    G  GL EE A + +  + + +Y + 
Sbjct: 338 AINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEF--EKVAVYMSS 395
Query: 138 YKP 140
           + P
Sbjct: 396 FTP 398

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           + +Y + + P    I     ++   K+V   +    VLG+H +G  A E+IQ     ++ 
Sbjct: 389 VAVYMSSFTPLMHNISGSKYKKFVAKIVTNHS-DGTVLGVHLLGDGAPEIIQAVGVCLRL 447
Query: 289 GLTFETLESTVGIHPTLAEEF 309
                   +T+G+HPT AEE 
Sbjct: 448 NAKISDFYNTIGVHPTSAEEL 468

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D V+MAIGR   T +  + N GVK+ P+      +  +TN+PN++A+GD+  ++  LTPV
Sbjct: 282 DVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDIT-DRLMLTPV 340
Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAY 137
           A+  G  L   ++GN   + D+  VA+ VF+    G  GL EE A + +  + + +Y + 
Sbjct: 341 AINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEF--EKVAVYMSS 398
Query: 138 YKP 140
           + P
Sbjct: 399 FTP 401

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           + +Y + + P    I     ++   K+V   +    VLG+H +G  A E+IQ     ++ 
Sbjct: 392 VAVYMSSFTPLMHNISGSKYKKFVAKIVTNHS-DGTVLGVHLLGDGAPEIIQAVGVCLRL 450
Query: 289 GLTFETLESTVGIHPTLAEEF 309
                   +T+G+HPT AEE 
Sbjct: 451 NAKISDFYNTIGVHPTSAEEL 471

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D V++A GR   T    +  AGVKV    A +  +   TN+ +++AVGDV     +LTPV
Sbjct: 278 DRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGH-IQLTPV 336
Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAY 137
           A+          + N +T  DY  + T VF+  E G VGLSEE A   Y    +EIY   
Sbjct: 337 AIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRY--KRVEIYRTV 394
Query: 138 YKPTEFFIPQRNPQRCYLKFI 158
           ++P    +   +P++ ++K +
Sbjct: 395 FRPMRNVLSG-SPEKMFMKLV 414

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           ++IY   ++P    +   +P++ ++K+V +    + V+G H +G NAGE+ Q    ++K 
Sbjct: 388 VEIYRTVFRPMRNVLSG-SPEKMFMKLVVD-GESRIVVGAHVLGENAGEIAQLIGISLKG 445
Query: 289 GLTFETLESTVGIHPTLAEEF 309
            LT +  + T+ +HPT++EE 
Sbjct: 446 KLTKDIFDKTMAVHPTMSEEL 466

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 37/178 (20%)
Query: 17  YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV--------- 67
           +D V+  +GR   TE   +    V+    N  +  +N++T++ N++AVGD          
Sbjct: 264 FDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEI 322
Query: 68  --------------LHEKP----------ELTPVAVQAGKLLAARLYGNGTTQMDYQNVA 103
                         L++K           +LTPVA+ AG+LLA RL+   T + +Y+ + 
Sbjct: 323 EDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIP 382
Query: 104 TTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNP---QRCYLKFI 158
           T +F+    G +GLSEE A ++YG +N++IY + +    F +    P   ++ YLK +
Sbjct: 383 TVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLV 440

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQ---RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAA 285
           +KIY + +    F +    P+   + YLK+VC     + + G+H IG NA E++QG+A A
Sbjct: 410 VKIYESKFTNLFFSVYDIEPELKEKTYLKLVC-VGKDELIKGLHIIGLNADEIVQGFAVA 468
Query: 286 VKCGLTFETLESTVGIHPTLAEEF 309
           +K   T +  + T+ IHPT AEEF
Sbjct: 469 LKMNATKKDFDETIPIHPTAAEEF 492

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 5   TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
           +G  MD      +D V+MAIGR   T++  + NAGV +     ++D +  +TN+ N++A+
Sbjct: 272 SGKKMD------FDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVD-EYSRTNVSNIYAI 324
Query: 65  GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           GDV + +  LTPVA+     L   ++G    + D+  VA+ VF+    G  GL EE A +
Sbjct: 325 GDVTN-RVMLTPVAINEAAALVDTVFGTNPRKTDHTRVASAVFSIPPIGTCGLIEEVASK 383
Query: 125 LYGADNLEIYHAYYKP 140
            Y  + + +Y + + P
Sbjct: 384 RY--EVVAVYLSSFTP 397

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
           + ++  +    +   VLG+H +G NA E+IQG    +K         +T+G+HPT AEE 
Sbjct: 408 KTFVAKIITNHSDGTVLGVHLLGDNAPEIIQGVGICLKLNAKISDFYNTIGVHPTSAEEL 467

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 5   TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
           +G  MD      +D V+MAIGR   T++  + NAGV +     ++D +  +TN+ N++A+
Sbjct: 272 SGKKMD------FDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVD-EYSRTNVSNIYAI 324
Query: 65  GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           GDV + +  LTPVA+     L   ++G    + D+  VA+ VF+    G  GL EE A +
Sbjct: 325 GDVTN-RVMLTPVAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASK 383
Query: 125 LYGADNLEIYHAYYKP 140
            Y  + + +Y + + P
Sbjct: 384 RY--EVVAVYLSSFTP 397

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
           + ++  +    +   VLG+H +G NA E+IQG    +K         +T+G+HPT AEE 
Sbjct: 408 KTFVAKIITNHSDGTVLGVHLLGDNAPEIIQGIGICLKLNAKISDFYNTIGVHPTSAEEL 467

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 5   TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
           +G  MD      +D V+MAIGR   T++  + NAGV +     ++D +  +TN+ N++A+
Sbjct: 271 SGKKMD------FDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVD-EYSRTNVSNIYAI 323
Query: 65  GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           GDV + +  LTPVA+     L   ++G    + D+  VA+ VF+    G  GL EE A +
Sbjct: 324 GDVTN-RVMLTPVAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASK 382
Query: 125 LYGADNLEIYHAYYKP 140
            Y  + + +Y + + P
Sbjct: 383 RY--EVVAVYLSSFTP 396

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
           + ++  +    +   VLG+H +G NA E+IQG    +K         +T+G+HPT AEE 
Sbjct: 407 KTFVAKIITNHSDGTVLGVHLLGDNAPEIIQGIGICLKLNAKISDFYNTIGVHPTSAEEL 466

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 5   TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
           +G  MD      +D V+MAIGR   T++  + NAGV +     ++D +  +TN+ N++A+
Sbjct: 273 SGKKMD------FDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVD-EYSRTNVSNIYAI 325
Query: 65  GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           GDV + +  LTPVA+     L   ++G    + D+  VA+ VF+    G  GL EE A +
Sbjct: 326 GDVTN-RVMLTPVAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASK 384
Query: 125 LYGADNLEIYHAYYKP 140
            Y  + + +Y + + P
Sbjct: 385 RY--EVVAVYLSSFTP 398

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
           + ++  +    +   VLG+H +G NA E+IQG    +K         +T+G+HPT AEE 
Sbjct: 409 KTFVAKIITNHSDGTVLGVHLLGDNAPEIIQGIGICLKLNAKISDFYNTIGVHPTSAEEL 468

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Query: 7   ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGD 66
           A+  K  E   D V +A+GR   T    +  AGV+     A I     +T+ P ++A+GD
Sbjct: 247 ATTXKHGEIVADQVXLALGRXPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGD 306
Query: 67  VLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELY 126
           V  ++ +LTPVA+          Y N  T  D+  +AT VF+  E G VG++EE+A   +
Sbjct: 307 VT-DRVQLTPVAIHEAXCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKF 365
Query: 127 GADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
               +E+Y A ++P +  +  R  ++   K + +A
Sbjct: 366 --QEIEVYRAEFRPXKATLSGRK-EKTIXKLVVNA 397

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +++Y A ++P +  +  R  +     VV   AA +KV+G H +G +AGE  Q    +++ 
Sbjct: 368 IEVYRAEFRPXKATLSGRKEKTIXKLVV--NAADRKVVGAHILGHDAGEXAQLLGISLRA 425
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G T +  + T  +HPT AEE 
Sbjct: 426 GCTKDDFDRTXAVHPTAAEEL 446

>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKP 72
           E  YD V++AIGR   ++   +  AGV+V    A K+D+   +TN+ N++A+GDV  ++ 
Sbjct: 275 EADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDA-YSKTNVDNIYAIGDVT-DRV 332
Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
            LTPVA+  G      ++ N     D+  VA  VF+    G  G  EE A + Y  D + 
Sbjct: 333 MLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVA 390
Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFI 158
           +Y + + P    I     ++  ++ +
Sbjct: 391 VYESSFTPLMHNISGSTYKKFMVRIV 416

>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           + +Y + + P    I     ++  +++V   A  + VLG+H +G ++ E+IQ  A  +K 
Sbjct: 389 VAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGE-VLGVHMLGDSSPEIIQSVAICLKM 447
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G       +T+G+HPT AEE 
Sbjct: 448 GAKISDFYNTIGVHPTSAEEL 468

>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKP 72
           E  YD V++AIGR   ++   +  AGV+V    A K+D+   +TN+ N++A+GDV  ++ 
Sbjct: 275 EADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDA-YSKTNVDNIYAIGDVT-DRV 332
Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
            LTPVA+  G      ++ N     D+  VA  VF+    G  G  EE A + Y  D + 
Sbjct: 333 MLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVA 390
Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFI 158
           +Y + + P    I     ++  ++ +
Sbjct: 391 VYESSFTPLMHNISGSTYKKFMVRIV 416

>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           + +Y + + P    I     ++  +++V   A  + VLG+H +G ++ E+IQ  A  +K 
Sbjct: 389 VAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGE-VLGVHMLGDSSPEIIQSVAICLKM 447
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G       +T+G+HPT AEE 
Sbjct: 448 GAKISDFYNTIGVHPTSAEEL 468

>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKP 72
           E  YD V++AIGR   ++   +  AGV+V    A K+D+   +TN+ N++A+GDV  ++ 
Sbjct: 274 EADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDA-YSKTNVDNIYAIGDVT-DRV 331
Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
            LTPVA+  G      ++ N     D+  VA  VF+    G  G  EE A + Y  D + 
Sbjct: 332 MLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVA 389
Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFI 158
           +Y + + P    I     ++  ++ +
Sbjct: 390 VYESSFTPLMHNISGSTYKKFMVRIV 415

>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           + +Y + + P    I     ++  +++V   A  + VLG+H +G ++ E+IQ  A  +K 
Sbjct: 388 VAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGE-VLGVHMLGDSSPEIIQSVAICLKM 446
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G       +T+G+HPT AEE 
Sbjct: 447 GAKISDFYNTIGVHPTSAEEL 467

>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKP 72
           E  YD V++AIGR   ++   +  AGV+V    A K+D+   +TN+ N++A+GDV  ++ 
Sbjct: 274 EADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDA-YSKTNVDNIYAIGDVT-DRV 331
Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
            LTPVA+  G      ++ N     D+  VA  VF+    G  G  EE A + Y  D + 
Sbjct: 332 MLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVA 389
Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFI 158
           +Y + + P    I     ++  ++ +
Sbjct: 390 VYESSFTPLMHNISGSTYKKFMVRIV 415

>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           + +Y + + P    I     ++  +++V   A  + VLG+H +G ++ E+IQ  A  +K 
Sbjct: 388 VAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGE-VLGVHMLGDSSPEIIQSVAICLKM 446
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G     + +T+G+HPT AEE 
Sbjct: 447 GAKISDVYNTIGVHPTSAEEL 467

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKP 72
           E+ YD V++AIGR   ++   +  AGV+   +N  +  D   +T++ N++A+GDV + + 
Sbjct: 295 EEDYDQVMLAIGRVPRSQALQLDKAGVRT-GKNGAVQVDAYSKTSVDNIYAIGDVTN-RV 352
Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
            LTPVA+  G      ++G      D+  VA  VF+    G  G++EE+A + Y  + + 
Sbjct: 353 MLTPVAINEGAAFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNY--ETVA 410
Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFI 158
           +Y + + P    I     +   ++ I
Sbjct: 411 VYASSFTPLMHNISGSKHKEFMIRII 436

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           + +Y + + P    I     +   ++++   +  + VLG+H +G +A E+IQ     +K 
Sbjct: 409 VAVYASSFTPLMHNISGSKHKEFMIRIITNESNGE-VLGVHMLGDSAPEIIQSVGICMKM 467
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G       ST+G+HPT AEE 
Sbjct: 468 GAKISDFHSTIGVHPTSAEEL 488

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKP 72
           E+ YD V++AIGR   ++   +  AGV+   +N  +  D   +T++ N++A+GDV + + 
Sbjct: 295 EEDYDQVMLAIGRVPRSQALQLDKAGVRT-GKNGAVQVDAYSKTSVDNIYAIGDVTN-RV 352
Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
            LTPVA+  G      ++G      D+  VA  VF+    G  G++EE+A + Y  + + 
Sbjct: 353 MLTPVAINEGAAFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNY--ETVA 410
Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFI 158
           +Y + + P    I     +   ++ I
Sbjct: 411 VYASSFTPLMHNISGSKHKEFMIRII 436

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           + +Y + + P    I     +   ++++   +  + VLG+H +G +A E+IQ     +K 
Sbjct: 409 VAVYASSFTPLMHNISGSKHKEFMIRIITNESNGE-VLGVHMLGDSAPEIIQSVGICMKM 467
Query: 289 GLTFETLESTVGIHPTLAEEF 309
           G       ST+G+HPT AEE 
Sbjct: 468 GAKISDFHSTIGVHPTSAEEL 488

>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           ++T+D +++A+GRR +T +   +++GV +         D+ +T++P VFA+GDV+     
Sbjct: 266 KETFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDHCKTSVPGVFAIGDVVR-GAM 324
Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           L   A + G ++A R+ G+   QM+Y  + + ++T  E   VG    K E+   A+ +E+
Sbjct: 325 LAHKASEEGVMVAERIAGH-KAQMNYDLIPSVIYTHPEIAWVG----KTEQTLKAEGVEV 379

>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
           N     +KV+ + A   +VLG+H IGP+A E++Q  A  ++ G + E L   V  HPTL+
Sbjct: 396 NDTTGLVKVIAD-AKTDRVLGVHVIGPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTLS 454
Query: 307 EEF 309
           E  
Sbjct: 455 EAL 457

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPELTP 76
           D VL+A+GRR  TE  ++ NAG+    E  +I  D   +T +P+++A+GDV+   P L  
Sbjct: 254 DRVLVAVGRRPYTEGLSLENAGLST-DERGRIPVDEHLRTRVPHIYAIGDVVR-GPMLAH 311
Query: 77  VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
            A + G + A      G   +DYQ + + V+T  E   VG +EE+
Sbjct: 312 KASEEG-IAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYTEEE 355

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 7   ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGD 66
           AS  K    T D +L+ IGRR  T+   +   G+++ P      +   QT IPN++A+GD
Sbjct: 261 ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 320
Query: 67  VLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           V+   P L   A   G +    + G G   +DY  V + ++T  E   VG SEE+ +E
Sbjct: 321 VV-AGPMLAHKAEDEGIICVEGMAG-GAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKE 376

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR 311
            +K++ +++   +VLG H +GP AGE++   A A++ G + E +      HPTL+E F  
Sbjct: 403 MVKILGQKS-TDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFRE 461
Query: 312 VTITKRSGE 320
             +    G+
Sbjct: 462 ANLAASFGK 470

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 7   ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGD 66
           AS  K    T D +L+ IGRR  T+   +   G+++ P      +   QT IPN++A+GD
Sbjct: 261 ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 320
Query: 67  VLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           V+   P L   A   G +    + G G   +DY  V + ++T  E   VG SEE+ +E
Sbjct: 321 VV-AGPMLAHKAEDEGIICVEGMAG-GAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKE 376

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR 311
            +K++ +++   +VLG H +GP AGE++   A A++ G + E +      HPTL+E F  
Sbjct: 403 MVKILGQKST-DRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFRE 461
Query: 312 VTITKRSGE 320
             +    G+
Sbjct: 462 ANLAASFGK 470

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 7   ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGD 66
           AS  K    T D +L+ IGRR  T+   +   G+++ P      +   QT IPN++A+GD
Sbjct: 282 ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 341
Query: 67  VLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           V+   P L   A   G +    + G G   +DY  V + ++T  E   VG SEE+ +E
Sbjct: 342 VV-AGPMLAHKAEDEGIICVEGMAG-GAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKE 397

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 312
           +K++ +++   +VLG H +GP AGE++   A A++ G + E +      HPTL+E F   
Sbjct: 425 VKILGQKS-TDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREA 483
Query: 313 TITKRSGE 320
            +    G+
Sbjct: 484 NLAASFGK 491

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPELTP 76
           D VL+ +GRR  T+E  +   G+K +     I+ D + +T++PN+FA+GD++   P L  
Sbjct: 260 DYVLVTVGRRPNTDELGLEQIGIK-MTNRGLIEVDQQCRTSVPNIFAIGDIV-PGPALAH 317
Query: 77  VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
            A   GK+ A  + G+  + +DY  +   VF+  E   VG  E++A++
Sbjct: 318 KASYEGKVAAEAIAGH-PSAVDYVAIPAVVFSDPECASVGYFEQQAKD 364

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
           N    +LK+V  R     ++G   IGPNA ++I     A++ G+T E +  T+  HPTL 
Sbjct: 386 NDTDGFLKLVV-RKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLG 444
Query: 307 E 307
           E
Sbjct: 445 E 445

>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 17  YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPELT 75
           +D +++A+GRR +T +   +++GV  + E   I  D+   T++P V+A+GDV+     L 
Sbjct: 269 FDKLIVAVGRRPVTTDLLAADSGV-TLDERGFIYVDDYCATSVPGVYAIGDVVR-GAMLA 326
Query: 76  PVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEE--KAE 123
             A + G ++A R+ G+   QM+Y  +   ++T  E   VG +E+  KAE
Sbjct: 327 HKASEEGVVVAERIAGH-KAQMNYDLIPAVIYTHPEIAGVGKTEQALKAE 375

>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
           N    ++KV+ + A   +VLG+H IGP+A E++Q  A A++ G + E L   V  HP L+
Sbjct: 396 NDTAGFVKVIAD-AKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALS 454
Query: 307 EEF 309
           E  
Sbjct: 455 EAL 457

>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 23  AIGRRALTEETAVSNAGVKV-----IPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           A+GR+  TE   +  AGVKV     I  NA++     +T++P V+A+GD     P L   
Sbjct: 266 AVGRKPRTEGLGLEKAGVKVDERGFIRVNARM-----ETSVPGVYAIGDAAR-PPLLAHK 319
Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAE 123
           A++ G L+AA       +  DYQ V + V+T  E+  VGL+EE+A+
Sbjct: 320 AMREG-LIAAENAAGKDSAFDYQ-VPSVVYTSPEWAGVGLTEEEAK 363

>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR 311
           ++K++ + +  +++LG H IGPNAGE+I     A++ G + E +      HPTL+E F  
Sbjct: 408 FVKILID-SKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKE 466
Query: 312 VTI 314
             +
Sbjct: 467 ANM 469

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPELTP 76
           + VL+A GR+  T+   ++ AGV V+    +++ D   QT+I  V+A+GDV+   P L  
Sbjct: 290 EVVLIATGRKPSTDGLGLAKAGV-VLDSRGRVEIDRHFQTSIAGVYAIGDVVR-GPXLAH 347
Query: 77  VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEK 121
            A   G  +A  + G     ++Y  +   V+T  E   VG +EE+
Sbjct: 348 KAEDEGVAVAEIIAGQ-AGHVNYDVIPGVVYTQPEVASVGKTEEE 391

>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           D +L+A GR   T   A+  AGV V  + A +     +T+ PN++A GD   ++P+   V
Sbjct: 261 DKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCT-DQPQFVYV 319
Query: 78  AVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
           A  AG   A  + G G   +D   +   VFT  +   VG SE +A
Sbjct: 320 AAAAGTRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEA 363

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	2e-95
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	2e-93
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	8e-91
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	2e-88
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	5e-80
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	1e-78
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	4e-78
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	2e-75
1fec_A	490	Trypanothione reductase; redox-active center, oxid	4e-75
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	1e-74
4dna_A	463	Probable glutathione reductase; structural genomic	2e-57
4dna_A	463	Probable glutathione reductase; structural genomic	7e-33
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-55
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	8e-34
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	5e-43
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	2e-25
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	6e-20
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	1e-12
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	5e-17
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	2e-10
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-16
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	4e-10
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	2e-15
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	3e-06
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	4e-15
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-06
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	4e-15
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	1e-06
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	1e-14
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	1e-07
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	1e-14
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	2e-07
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	1e-14
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	6e-09
1ojt_A	482	Surface protein; redox-active center, glycolysis,	2e-14
1ojt_A	482	Surface protein; redox-active center, glycolysis,	3e-06
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	3e-14
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	4e-09
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	3e-14
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	3e-06
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	5e-14
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	2e-06
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	5e-14
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	3e-07
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	6e-14
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	7e-07
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	9e-14
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	3e-06
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	3e-13
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	6e-07
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	5e-10
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	7e-10
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	1e-09
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	1e-09
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	3e-09
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	5e-09
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	5e-09
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	6e-09
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	7e-09
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	1e-08
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	2e-05
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-04
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	2e-04
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	5e-04
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	5e-04

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score =  291 bits (748), Expect = 2e-95
 Identities = 116/320 (36%), Positives = 158/320 (49%), Gaps = 99/320 (30%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVL 68
           +++ E  Y+TV++AIGR A T +  +   GVK+  +  KI     EQTN+P ++A+GD+L
Sbjct: 297 EEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDIL 356

Query: 69  HEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
            +K ELTPVA+QAG+LLA RLY   T + DY+NV TTVFTPLEYG  GLSEEKA E +G 
Sbjct: 357 EDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGE 416

Query: 129 DNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYY 188
           +N+E+YH+Y+                                                  
Sbjct: 417 ENIEVYHSYF-------------------------------------------------- 426

Query: 189 KPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP 248
            P E+ IP R+  +CY KI                                         
Sbjct: 427 WPLEWTIPSRDNNKCYAKI----------------------------------------- 445

Query: 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEE 308
                  +C     ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GIHP  AE 
Sbjct: 446 -------ICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 498

Query: 309 FTRVTITKRSGEDPTPQSCC 328
           FT +++TKRSG        C
Sbjct: 499 FTTLSVTKRSGASILQAGSC 518

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score =  285 bits (731), Expect = 2e-93
 Identities = 119/322 (36%), Positives = 158/322 (49%), Gaps = 99/322 (30%)

Query: 5   TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-NEQTNIPNVFA 63
              +  K    T+DTVL AIGR   T    +  AG+   P+N KI  D  E T++P+++A
Sbjct: 264 EDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYA 323

Query: 64  VGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAE 123
           +GDV   +PELTP A++AGKLLA RL+G  +T MDY NV TTVFTPLEYGCVGLSEE+A 
Sbjct: 324 IGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAV 383

Query: 124 ELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVI 183
            L+G +++E+YHAYYKP EF +  R+  +                               
Sbjct: 384 ALHGQEHVEVYHAYYKPLEFTVADRDASQ------------------------------- 412

Query: 184 YHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFI 243
                              CY+K+                                    
Sbjct: 413 -------------------CYIKM------------------------------------ 417

Query: 244 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 303
                       VC R  PQ VLG+HF+GPNAGEV QG+A  +KCG ++  +  TVGIHP
Sbjct: 418 ------------VCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHP 465

Query: 304 TLAEEFTRVTITKRSGEDPTPQ 325
           T +EE  ++ I+KRSG +PT  
Sbjct: 466 TCSEEVVKLHISKRSGLEPTVT 487

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score =  281 bits (722), Expect = 8e-91
 Identities = 105/318 (33%), Positives = 145/318 (45%), Gaps = 98/318 (30%)

Query: 11  KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE 70
           K FE+ ++TV+ A+GR     +      GVK+      + +D+EQT + NV+A+GD+   
Sbjct: 378 KKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAG 437

Query: 71  KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN 130
           KP+LTPVA+QAG+ LA RL+   T   DY NVATTVFTPLEYG  GLSEE A E YG  +
Sbjct: 438 KPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKD 497

Query: 131 LEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKP 190
           +E+YH+ +                                                  KP
Sbjct: 498 IEVYHSNF--------------------------------------------------KP 507

Query: 191 TEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR 250
            E+ +  R    CY+K+                                           
Sbjct: 508 LEWTVAHREDNVCYMKL------------------------------------------- 524

Query: 251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
                VC ++   +VLG+H +GPNAGE+ QGYA A+K G T    + T+GIHPT +E FT
Sbjct: 525 -----VCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFT 579

Query: 311 RVTITKRSGEDPTPQSCC 328
            + +TK+SG  P    CC
Sbjct: 580 TLHVTKKSGVSPIVSGCC 597

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score =  272 bits (697), Expect = 2e-88
 Identities = 133/317 (41%), Positives = 165/317 (52%), Gaps = 99/317 (31%)

Query: 5   TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
                 +  ED YDTVL AIGR+ L ++  + NAGV V  +   +D   E TN+ N++AV
Sbjct: 266 KNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVD-SQEATNVANIYAV 324

Query: 65  GDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           GD+++ KPELTPVAV AG+LLA RLYG  T +MDY++VATTVFTPLEY CVGLSEE A +
Sbjct: 325 GDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVK 384

Query: 125 LYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIY 184
            +GAD +E++H YY                                              
Sbjct: 385 QFGADEIEVFHGYY---------------------------------------------- 398

Query: 185 HAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP 244
               KPTEFFIPQ++ + CYLK                                      
Sbjct: 399 ----KPTEFFIPQKSVRYCYLKA------------------------------------- 417

Query: 245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPT 304
                      V ER   Q+V G+H+IGP AGEVIQG+AAA+K GLT  TL +TVGIHPT
Sbjct: 418 -----------VAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPT 466

Query: 305 LAEEFTRVTITKRSGED 321
            AEEFTR+ ITKRSG D
Sbjct: 467 TAEEFTRLAITKRSGLD 483

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  250 bits (640), Expect = 5e-80
 Identities = 77/313 (24%), Positives = 118/313 (37%), Gaps = 103/313 (32%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
            + +D+V+ A+GR   T +  +  AG++V           + TN+P V+A+GD+   + +
Sbjct: 250 LEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITG-RDQ 308

Query: 74  LTPVAVQAGKLLAARLY-GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
           LTPVA+ AG+ LA RL+ G    ++DY N+ T VF       VGLSE +A E  G D L 
Sbjct: 309 LTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLG-DVLT 367

Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTE 192
           +Y   +                                                   P  
Sbjct: 368 VYETSF--------------------------------------------------TPMR 377

Query: 193 FFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY 252
           + + +                                                    +  
Sbjct: 378 YALNEH-------------------------------------------------GPKTA 388

Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 312
           +K+VC     Q+V+G+H IG  A E++QG+A AVK G T    ++TV IHP  AEE   +
Sbjct: 389 MKLVCA-GPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTL 447

Query: 313 TITKRSGEDPTPQ 325
               R   DP P+
Sbjct: 448 KEPVRRPGDPLPE 460

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score =  247 bits (632), Expect = 1e-78
 Identities = 73/307 (23%), Positives = 116/307 (37%), Gaps = 102/307 (33%)

Query: 5   TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAV 64
            G           D +L AIGR   T++ +++  G++   +   I  + + TN+  ++AV
Sbjct: 270 PGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 329

Query: 65  GDVLHEKPELTPVAVQAGKLLAARLYGNG-TTQMDYQNVATTVFTPLEYGCVGLSEEKAE 123
           GDV   K  LTPVA+ AG+ LA RL+     +++DY N+ T VF+    G VGL+E++A 
Sbjct: 330 GDVCG-KALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAI 388

Query: 124 ELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVI 183
             YG +N++ Y   +                                             
Sbjct: 389 HKYGIENVKTYSTSF--------------------------------------------- 403

Query: 184 YHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFI 243
                 P    + +R                                             
Sbjct: 404 -----TPMYHAVTKR--------------------------------------------- 413

Query: 244 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 303
                 +C +K+VC     +KV+G+H  G    E++QG+A AVK G T    ++TV IHP
Sbjct: 414 ----KTKCVMKMVCA-NKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHP 468

Query: 304 TLAEEFT 310
           T +EE  
Sbjct: 469 TSSEELV 475

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  246 bits (630), Expect = 4e-78
 Identities = 66/318 (20%), Positives = 105/318 (33%), Gaps = 107/318 (33%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
               D V+MAIGR   T +  + N GVK+ P+      +  +TN+PN++A+GD+   +  
Sbjct: 278 TLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITD-RLM 336

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVA+  G  L   ++GN   + D+  VA+ VF+    G  GL EE A + +  + + +
Sbjct: 337 LTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEF--EKVAV 394

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
           Y + +                                                   P   
Sbjct: 395 YMSSF--------------------------------------------------TPLMH 404

Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
            I     ++   KI                                              
Sbjct: 405 NISGSKYKKFVAKI---------------------------------------------- 418

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR-- 311
             V    +   VLG+H +G  A E+IQ     ++         +T+G+HPT AEE     
Sbjct: 419 --VTN-HSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMR 475

Query: 312 ---VTITKRSGEDPTPQS 326
                  K    +  P S
Sbjct: 476 TPSYYYVKGEKMEKLPDS 493

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  237 bits (608), Expect = 2e-75
 Identities = 75/298 (25%), Positives = 114/298 (38%), Gaps = 102/298 (34%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
            +T D ++ AIGR    +   +  AGVK   +   +    + TNI  ++AVGD      E
Sbjct: 251 SETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTG-AVE 309

Query: 74  LTPVAVQAGKLLAARLYGNGTTQ-MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE 132
           LTPVAV AG+ L+ RL+ N   + +DY N+ T VF+    G VGL+E +A E YG D ++
Sbjct: 310 LTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVK 369

Query: 133 IYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTE 192
           +Y + +                                                      
Sbjct: 370 VYKSSF--------------------------------------------------TAMY 379

Query: 193 FFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY 252
             +                                                     Q C 
Sbjct: 380 TAVTTH-------------------------------------------------RQPCR 390

Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 310
           +K+VC   + +K++G+H IG    E++QG+A A+K G T +  ++TV IHPT AEEF 
Sbjct: 391 MKLVCV-GSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV 447

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  238 bits (609), Expect = 4e-75
 Identities = 65/317 (20%), Positives = 102/317 (32%), Gaps = 105/317 (33%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           E  YD V++AIGR   ++   +  AGV+V    A       +TN+ N++A+GDV   +  
Sbjct: 274 EADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTD-RVM 332

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVA+  G      ++ N     D+  VA  VF+    G  G  EE A + Y  D + +
Sbjct: 333 LTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAV 390

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEF 193
           Y + +                                                   P   
Sbjct: 391 YESSF--------------------------------------------------TPLMH 400

Query: 194 FIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYL 253
            I     ++  ++I                                              
Sbjct: 401 NISGSTYKKFMVRI---------------------------------------------- 414

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR-- 311
             V    A  +VLG+H +G ++ E+IQ  A  +K G       +T+G+HPT AEE     
Sbjct: 415 --VTN-HADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR 471

Query: 312 -VTITKRSGEDPTPQSC 327
                   G+       
Sbjct: 472 TPAYFYEKGKRVEKIDS 488

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  236 bits (605), Expect = 1e-74
 Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 111/309 (35%)

Query: 15  DTYDTVLMAIGRRALTE---ETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEK 71
           D  D ++  IGR++      E    N G+K+   +  I  + + TN+PN++++GDV+  K
Sbjct: 272 DDVDELIWTIGRKSHLGMGSE----NVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVG-K 326

Query: 72  PELTPVAVQAGKLLAARLYGN---GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
            ELTPVA+ AG+ L+ RL+G       ++DY+NV + +F+  E G +G+SE++A E YG 
Sbjct: 327 VELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGK 386

Query: 129 DNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYY 188
           +N+++Y++ +                                                  
Sbjct: 387 ENIKVYNSKF-------------------------------------------------- 396

Query: 189 KPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP 248
               + +                                                     
Sbjct: 397 TAMYYAMLSE-------------------------------------------------K 407

Query: 249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEE 308
                K+VC     +KV+G+H +G ++ E++QG+  A+K G T    ++ V IHPT AEE
Sbjct: 408 SPTRYKIVCA-GPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEE 466

Query: 309 FTRVTITKR 317
              +  +  
Sbjct: 467 LVTMRGSHH 475

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  191 bits (487), Expect = 2e-57
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
           E   D V++A+GR   T    +  AGV+     A I     +T+ P ++A+GDV   + +
Sbjct: 254 EIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTD-RVQ 312

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVA+          Y N  T  D+  +AT VF+  E G VG++EE+A   +    +E+
Sbjct: 313 LTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQ--EIEV 370

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFI 158
           Y A ++P +  +  R  ++  +K +
Sbjct: 371 YRAEFRPMKATLSGR-KEKTIMKLV 394

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  125 bits (317), Expect = 7e-33
 Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 5/95 (5%)

Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           +++Y A ++P +  +  R  ++  +K+V   AA +KV+G H +G +AGE+ Q    +++ 
Sbjct: 368 IEVYRAEFRPMKATLSGR-KEKTIMKLVVN-AADRKVVGAHILGHDAGEMAQLLGISLRA 425

Query: 289 GLTFETLESTVGIHPTLAEEFTR---VTITKRSGE 320
           G T +  + T+ +HPT AEE       +   R+GE
Sbjct: 426 GCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGE 460

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  187 bits (477), Expect = 1e-55
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPE 73
               D V++A GR   T    +  AGVKV    A +  +   TN+ +++AVGDV     +
Sbjct: 274 TICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTG-HIQ 332

Query: 74  LTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEI 133
           LTPVA+          + N +T  DY  + T VF+  E G VGLSEE A   Y    +EI
Sbjct: 333 LTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYK--RVEI 390

Query: 134 YHAYYKPTEFFIPQRNPQRCYLKFI 158
           Y   ++P    +    P++ ++K +
Sbjct: 391 YRTVFRPMRNVLSGS-PEKMFMKLV 414

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  128 bits (325), Expect = 8e-34
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 229 LKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKC 288
           ++IY   ++P    +    P++ ++K+V +    + V+G H +G NAGE+ Q    ++K 
Sbjct: 388 VEIYRTVFRPMRNVLSGS-PEKMFMKLVVD-GESRIVVGAHVLGENAGEIAQLIGISLKG 445

Query: 289 GLTFETLESTVGIHPTLAEEFT---RVTITKRSGED 321
            LT +  + T+ +HPT++EE     + +    +GE 
Sbjct: 446 KLTKDIFDKTMAVHPTMSEELVTMYKPSYVYENGEK 481

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  153 bits (390), Expect = 5e-43
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 37/185 (20%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
           D    + +D V+  +GR   TE   +    V+       +D +N++T++ N++AVGD   
Sbjct: 257 DGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVD-ENQRTSVNNIYAVGDCCM 315

Query: 70  E---------------------------------KPELTPVAVQAGKLLAARLYGNGTTQ 96
                                               +LTPVA+ AG+LLA RL+   T +
Sbjct: 316 VKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRK 375

Query: 97  MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQR---NPQRC 153
            +Y+ + T +F+    G +GLSEE A ++YG +N++IY + +    F +        ++ 
Sbjct: 376 TNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKT 435

Query: 154 YLKFI 158
           YLK +
Sbjct: 436 YLKLV 440

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  105 bits (264), Expect = 2e-25
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 6/88 (6%)

Query: 229 LKIYHAYYKPTEFFIPQR---NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAA 285
           +KIY + +    F +        ++ YLK+VC     + + G+H IG NA E++QG+A A
Sbjct: 410 VKIYESKFTNLFFSVYDIEPELKEKTYLKLVCV-GKDELIKGLHIIGLNADEIVQGFAVA 468

Query: 286 VKCGLTFETLESTVGIHPTLAEEFTRVT 313
           +K   T +  + T+ IHPT AEEF  +T
Sbjct: 469 LKMNATKKDFDETIPIHPTAAEEF--LT 494

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 89.3 bits (222), Expect = 6e-20
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
             D V + +G +  + E A    G+ +     ++  +   QT++PNV+AVGD++   P  
Sbjct: 304 ETDFVFLGLGEQPRSAELA-KILGLDL-GPKGEVLVNEYLQTSVPNVYAVGDLIG-GPME 360

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA 128
              A ++G   A  + G        +N    + T  E   +G+ EE+A      
Sbjct: 361 MFKARKSGCYAARNVMG-EKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHE 413

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST--VGIHPTLAEEFTR 311
           K+V + A  +KVLG H +G  A +  Q     +K GLT + L     + ++PT   + +R
Sbjct: 454 KIVID-AKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSR 512

Query: 312 VTITKRS 318
           +    ++
Sbjct: 513 LRAGSKN 519

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 80.7 bits (200), Expect = 5e-17
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 17/139 (12%)

Query: 1   MRIATGASMDKV----------FED----TYDTVLMAIGRRALTEETAVSNAGVKVIPEN 46
           +R+   A    V            D         LM IG    T    +   G+++   N
Sbjct: 238 VRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGN 297

Query: 47  A-KIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATT 105
              +D    +T    ++A GD       L  VA   G++      G G + +  + VA T
Sbjct: 298 YLTVD-RVSRTLATGIYAAGDCTG-LLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAAT 355

Query: 106 VFTPLEYGCVGLSEEKAEE 124
           VFT  E   VG+ +   + 
Sbjct: 356 VFTRPEIAAVGVPQSVIDA 374

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           K+ C R +   V+G   + P A E+I   A AV+  +T   L  T+ ++P+L+ 
Sbjct: 403 KIFC-RRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSG 455

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
             D +L+A GR   T   A+  AGV V      I  D   +T+ PN++A GD   ++P+ 
Sbjct: 259 RADKLLVATGRTPNTRSLALDAAGVTV-NAQGAIVIDQGMRTSNPNIYAAGDCT-DQPQF 316

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
             VA  AG   A  + G G   +D   +   VFT  +   VG SE +A  
Sbjct: 317 VYVAAAAGTRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEAHH 365

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 59.8 bits (146), Expect = 4e-10
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 17/82 (20%)

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE------ 307
           K+V E     +++G+  + P AGE+IQ  A A++  +T + L   +  + T+ E      
Sbjct: 394 KLVIE-EGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAA 452

Query: 308 -EFTRVTITKRSGEDPTPQSCC 328
             F +         D    SCC
Sbjct: 453 QTFNK---------DVKQLSCC 465

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 75.6 bits (187), Expect = 2e-15
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
           T + +L+++GRR  T    +    V    E   +   +  +T+IP+V+A+GDV+ + P L
Sbjct: 264 TCEALLVSVGRRPFTGGLGLDKINVAK-NERGFVKIGDHFETSIPDVYAIGDVVDKGPML 322

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
              A   G   A  L G     ++Y  +   ++T  E   VG SE++ ++
Sbjct: 323 AHKAEDEGVACAEILAG-KPGHVNYGVIPAVIYTMPEVASVGKSEDELKK 371

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
           ++LG+H +   AGE+I     A++ G + E +  T   HPT++E  
Sbjct: 409 RILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEAL 454

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 74.9 bits (185), Expect = 4e-15
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
                   D VL+A+GRR  T+   +    +K+      ID +  QT++ NV+A+GDV  
Sbjct: 250 GGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAID-ERCQTSMHNVWAIGDVAG 308

Query: 70  EKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
           E P L   A+  G+++A  + G    + +   +A   FT  E   VG + E+A +
Sbjct: 309 E-PMLAHRAMAQGEMVAEIIAG-KARRFEPAAIAAVCFTDPEVVVVGKTPEQASQ 361

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           +VV        +LG   +G    E+   +A +++ G   E +  T+  HPTL E
Sbjct: 390 RVVAR-RDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE 442

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 74.9 bits (185), Expect = 4e-15
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 4/116 (3%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVL 68
            +      D VL+ +GRR  T+E  +   G+K+      I+ D + +T++PN+FA+GD++
Sbjct: 252 GETKTIDADYVLVTVGRRPNTDELGLEQIGIKM-TNRGLIEVDQQCRTSVPNIFAIGDIV 310

Query: 69  HEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
              P L   A   GK+ A  + G   + +DY  +   VF+  E   VG  E++A++
Sbjct: 311 PG-PALAHKASYEGKVAAEAIAG-HPSAVDYVAIPAVVFSDPECASVGYFEQQAKD 364

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
            ++G   IGPNA ++I     A++ G+T E +  T+  HPTL E  
Sbjct: 402 VIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIA 447

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 4/110 (3%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
             D VL+A+GRR  TE  ++ NAG+    E  +I  D   +T +P+++A+GDV+   P L
Sbjct: 252 EADRVLVAVGRRPYTEGLSLENAGLST-DERGRIPVDEHLRTRVPHIYAIGDVVR-GPML 309

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
              A + G      +   G   +DYQ + + V+T  E   VG +EE+ + 
Sbjct: 310 AHKASEEGIAAVEHMVR-GFGHVDYQAIPSVVYTHPEIAAVGYTEEELKA 358

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           KV+   A   ++LG+H IG   G+V+   A A+    + E L      HP+L+E
Sbjct: 387 KVLAH-AKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSE 439

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 73.3 bits (181), Expect = 1e-14
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 4   ATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVF 62
              ++  +      D VL++ GR   T    +   GV+   +  +I  +    TN+  V+
Sbjct: 255 VEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVET-DKLGRILVNERFSTNVSGVY 313

Query: 63  AVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
           A+GDV+   P L   A + G      L G     +DY  V   V+T  E   VG +EE+ 
Sbjct: 314 AIGDVIP-GPMLAHKAEEDGVACVEYLAG-KVGHVDYDKVPGVVYTNPEVASVGKTEEQV 371

Query: 123 EE 124
           +E
Sbjct: 372 KE 373

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           K++ E     K+LG+H + PNAGE+I   A A++   + E +      HPT++E
Sbjct: 402 KIIAE-KETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSE 454

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVL 68
            +   +++  VL A GR+A  ++  + N  +++  +N+   D    QT++ ++F  GD  
Sbjct: 256 GQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDAN 315

Query: 69  HEKPELTPVAVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
           +    L   A   GK+            Q   +   + VFT  +   VGLS  + E+LY 
Sbjct: 316 N-TLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYA 374

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           L V  +     + LG    GP A  +    A A +  +T + + +    HP + E
Sbjct: 404 LNVYAD-RTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEE 457

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 72.6 bits (179), Expect = 2e-14
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKP 72
              YD VL+A GR    +  +   AGV V  +   I+ D + +TN+P+++A+GD++ + P
Sbjct: 272 PQRYDAVLVAAGRAPNGKLISAEKAGVAV-TDRGFIEVDKQMRTNVPHIYAIGDIVGQ-P 329

Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
            L   AV  G + A    G      D + +    +T  E   VG +E  A+ 
Sbjct: 330 MLAHKAVHEGHVAAENCAG-HKAYFDARVIPGVAYTSPEVAWVGETELSAKA 380

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
           +++G   +GPN G++I     A++ G     +  T+  HPTL E  
Sbjct: 418 RIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI 463

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
             + VL AIG     E   +  AGV +  +   I  D+  +TN+ +++A+GDV     +L
Sbjct: 259 KAEKVLQAIGFAPNVEGYGLDKAGVAL-TDRKAIGVDDYMRTNVGHIYAIGDVNG-LLQL 316

Query: 75  TPVAVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
             VA   G + A  + G    T  D++ +    F        GL+E++A  
Sbjct: 317 AHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARN 367

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           ++LG H +G +  E++     A +  LT   L   V  HPT++E
Sbjct: 405 ELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSE 448

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 4/112 (3%)

Query: 14  EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKP 72
              +D +++A+GRR +T +   +++GV +  E   I  D+   T++P V+A+GDV+    
Sbjct: 266 SQAFDKLIVAVGRRPVTTDLLAADSGVTL-DERGFIYVDDYCATSVPGVYAIGDVVRG-A 323

Query: 73  ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
            L   A + G ++A R+ G    QM+Y  +   ++T  E   VG +E+  + 
Sbjct: 324 MLAHKASEEGVVVAERIAG-HKAQMNYDLIPAVIYTHPEIAGVGKTEQALKA 374

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           +VLG+H IGP+A E++Q  A A++ G + E L   V  HP L+E
Sbjct: 412 RVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSE 455

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 71.4 bits (176), Expect = 5e-14
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVL 68
           +K      + +L+A+GRR           G++V  +  ++  D++  +  P++  VGDV 
Sbjct: 269 NKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEV-DKRGRLVIDDQFNSKFPHIKVVGDVT 327

Query: 69  HEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
              P L   A + G      L   G   ++Y N+ + +++  E   VG +EE+ +E
Sbjct: 328 FG-PMLAHKAEEEGIAAVEMLKT-GHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKE 381

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           ++LG H IGPNAGE+I     A++ G + E +      HPTL+E
Sbjct: 419 RILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSE 462

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 71.4 bits (176), Expect = 5e-14
 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 4   ATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVF 62
              A   +  E   D VL+A+GR+  TE   +  AGVKV  E   I  +   +T++P V+
Sbjct: 247 LEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKV-DERGFIRVNARMETSVPGVY 305

Query: 63  AVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA 122
           A+GD     P L   A++ G + A    G   +  DY  V + V+T  E+  VGL+EE+A
Sbjct: 306 AIGDAARP-PLLAHKAMREGLIAAENAAG-KDSAFDY-QVPSVVYTSPEWAGVGLTEEEA 362

Query: 123 EE 124
           + 
Sbjct: 363 KR 364

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
            +LG+  +GP AGE+I   A A++ G T   L  TV  HPTL+E
Sbjct: 402 LLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSE 445

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 71.4 bits (176), Expect = 6e-14
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHEKPEL 74
             + VL+A GR+  T+   ++ AGV +     +++ D   QT+I  V+A+GDV+   P L
Sbjct: 288 DAEVVLIATGRKPSTDGLGLAKAGVVL-DSRGRVEIDRHFQTSIAGVYAIGDVVR-GPML 345

Query: 75  TPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE 124
              A   G  +A  + G     ++Y  +   V+T  E   VG +EE+ + 
Sbjct: 346 AHKAEDEGVAVAEIIAG-QAGHVNYDVIPGVVYTQPEVASVGKTEEELKA 394

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
           K++ +     +VLG H IG  AGE+I   A  ++ G + E L  T   HPT++E  
Sbjct: 423 KILAD-KETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAV 477

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 70.6 bits (174), Expect = 9e-14
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 5   TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNE-QTNIPNVFA 63
             AS  K    T D +L+ IGRR  T+   +   G+++     +I  +   QT IPN++A
Sbjct: 259 EAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIEL-DPRGRIPVNTRFQTKIPNIYA 317

Query: 64  VGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAE 123
           +GDV+   P L   A   G +    + G G   +DY  V + ++T  E   VG SEE+ +
Sbjct: 318 IGDVVAG-PMLAHKAEDEGIICVEGMAG-GAVHIDYNCVPSVIYTHPEVAWVGKSEEQLK 375

Query: 124 E 124
           E
Sbjct: 376 E 376

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 254 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 309
           K++ +  +  +VLG H +GP AGE++   A A++ G + E +      HPTL+E F
Sbjct: 405 KILGQ-KSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAF 459

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 16  TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELT 75
             ++V++A GRR +  E A    G+ +      +D +  +TNIPNVFA GD         
Sbjct: 260 FTNSVVLAAGRRPVIPEGA-REIGLSISKTGIVVD-ETMKTNIPNVFATGDANG-LAPYY 316

Query: 76  PVAVQAGKLLAARLYGNGTTQMDYQNVAT---TVFTPLEYGCVGLSEEKAEE 124
             AV+     A  +       +DY +V +   T++T      VG+   KA +
Sbjct: 317 HAAVRMSIAAANNIMA-NGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARK 367

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 264 KVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 307
           +++G   IG ++  +I     AV  GL  + L S    HP+  E
Sbjct: 405 RLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNE 448

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 59.4 bits (145), Expect = 5e-10
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 18/137 (13%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD---VLH---E 70
           D+ + A+       + A  +  ++   +    +D    QT++PNVFA+GD   V++    
Sbjct: 234 DSGIFALNLHP---QLAYLDKKIQRNLDQTIAVD-AYLQTSVPNVFAIGDCISVMNEPVA 289

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
           +    P    AV+ G ++A  L       +       T          GL+E +      
Sbjct: 290 ETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFF-P 348

Query: 128 ADNLEIY---HAYYKPT 141
                I     A     
Sbjct: 349 QTLASIIVRQPAPPLQH 365

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490

 Score = 58.7 bits (143), Expect = 7e-10
 Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD---VLH---E 70
           D V++A+G R     T + N  + +    A  ++   ++T+IP V+A+GD   +      
Sbjct: 281 DMVILAVGFRP---NTTLGNGKIDLFRNGAFLVN-KRQETSIPGVYAIGDCATIYDNATR 336

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
                     AV+ G + A    G     +  Q         L     GL+ EKA+ L G
Sbjct: 337 DTNYIALASNAVRTGIVAAHNACGTDLEGIGVQGSNGISIYGLHMVSTGLTLEKAKRL-G 395

Query: 128 ADNLEIY-HAYYKPTEFFIPQRNPQRCYLKFIYHA 161
            D          KP   FI   N     +K +Y  
Sbjct: 396 FDAAVTEYTDNQKPE--FIEHGN-FPVTIKIVYDK 427

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 43/179 (24%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD---VLH---E 70
           D  ++ IG R     T +    V ++   A   D +   ++  ++FA GD   V +    
Sbjct: 237 DIAILCIGFRP---NTELLKGKVAMLDNGAIITD-EYMHSSNRDIFAAGDSAAVHYNPTN 292

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
                P    AV+ G+L+   L  +    M  Q+ +        Y   G++   A+    
Sbjct: 293 SNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKAN-- 350

Query: 128 ADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHA 186
             NL++                         Y   +  +   +         + ++Y  
Sbjct: 351 --NLKVSEVIIADN-----------------YRPEFMLSTDEV--------LMSLVYDP 382

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 20/155 (12%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGD---VLH---E 70
           D V++A+G R     TA     +++ P    K D +  +T+ P+VFAVGD   + +   +
Sbjct: 236 DLVVVAVGVRP---NTAWLKGTLELHPNGLIKTD-EYMRTSEPDVFAVGDATLIKYNPAD 291

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
                     A + G+     L          Q  +       ++   G++E  A++L G
Sbjct: 292 TEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKL-G 350

Query: 128 ADNLEIY-HAYYKPTEFFIPQRNPQRCYLKFIYHA 161
            +   +     Y     F P  + Q+ + K +Y  
Sbjct: 351 KETKAVTVVEDYLMD--FNP--DKQKAWFKLVYDP 381

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 19/139 (13%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
           D V++A G    T+     +AG+++ P  A  +D    +T+ P++FA GD       +  
Sbjct: 248 DLVILAAGVSPNTQ--LARDAGLELDPRGAIIVD-TRMRTSDPDIFAGGDCVTIPNLVTG 304

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
           KP   P   +A + G+++   L     T                    GL+ E A    G
Sbjct: 305 KPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALRE-G 363

Query: 128 ADNLEIY-----HAYYKPT 141
            D + ++      A++ P 
Sbjct: 364 YDAVNVHVEQFDRAHFYPE 382

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 56.3 bits (137), Expect = 5e-09
 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 19/139 (13%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
           + V++A G +   E       GV++    A   + +  QT++ NV+A GDV      +  
Sbjct: 234 ELVILATGIKPNIE--LAKQLGVRIGETGAIWTN-EKMQTSVENVYAAGDVAETRHVITG 290

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
           +    P      + G +  + + G           A T F  +E G  GL+E +A +  G
Sbjct: 291 RRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKE-G 349

Query: 128 ADNLEIY-----HAYYKPT 141
            D    +       +Y P 
Sbjct: 350 YDVRTAFIKASTRPHYYPG 368

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
           D ++MAIG R  T+     +AG+ +      K++    QT+ P ++AVGD       +  
Sbjct: 257 DLLIMAIGVRPETQ--LARDAGLAIGELGGIKVN-AMMQTSDPAIYAVGDAVEEQDFVTG 313

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
           +  L P    A + G++ A  ++G        Q  A      L  G  G +E++ ++  G
Sbjct: 314 QACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGATGKNEKQLKQA-G 372

Query: 128 ADNLEIY-----HAYYKPT 141
               ++Y     HA Y P 
Sbjct: 373 IAFEKVYVHTASHASYYPG 391

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 26/159 (16%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
           D +++AIG +  +       AG+ +      K++ +  QT+ P+++A+GD       + E
Sbjct: 272 DMLILAIGVQPESS--LAKGAGLALGVRGTIKVN-EKFQTSDPHIYAIGDAIEVKDFVTE 328

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATT----VFTPLEYGCVGLSEEKAE 123
              + P    A + G++LA  ++G+  +   Y+    T    VF  L     GL+E+  +
Sbjct: 329 TETMIPLAWPANRQGRMLADIIHGHTDSL--YKGTLGTSVAKVFD-LTVATTGLNEKILK 385

Query: 124 ELYGADNLEIY-HAYYKPTEFFIPQRNPQRCYLKFIYHA 161
            L       ++  A       + P  N     +K I++ 
Sbjct: 386 RL-NIPYEVVHVQANSHAG--YYP--NATPVLIKLIFNK 419

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 55.6 bits (135), Expect = 7e-09
 Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 24/141 (17%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
           D ++  +G    ++   + ++ +K+  +    ++ D  +TN+PN++A+GD+        +
Sbjct: 231 DMIIEGVGTHPNSK--FIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDIATSHYRHVD 287

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATT----VFTPLEYGCVGLSEEKAE 123
            P   P    A +A  ++A ++ GN T  ++++          F    +  VG+   + +
Sbjct: 288 LPASVPLAWGAHRAASIVAEQIAGNDT--IEFKGFLGNNIVKFFD-YTFASVGVKPNELK 344

Query: 124 ELYGADNLEI---YHAYYKPT 141
           +      +E+    HA Y P 
Sbjct: 345 QF-DYKMVEVTQGAHANYYPG 364

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDV------LHE 70
           D VL+++G +  T+   +    ++   + A +++    QTN+ +V+A GD       + E
Sbjct: 272 DLVLVSVGVKPNTD--FLEGTNIRTNHKGAIEVN-AYMQTNVQDVYAAGDCATHYHVIKE 328

Query: 71  KPELTP---VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG 127
             +  P    A + G+L    +                 F  L     GL+E++A+ L  
Sbjct: 329 IHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGL-H 387

Query: 128 ADNLEIY-----HAYYKPT 141
                +       A Y P 
Sbjct: 388 IPYKTVKVDSTNMAGYYPN 406

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHEKPELTP 76
           D V+ A G      +   + + +K    +  ++D +  QT+ P VFA GD++      T 
Sbjct: 432 DVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVG-MANTTV 490

Query: 77  VAVQAGKLLAAR 88
            +V  GK  A+ 
Sbjct: 491 ESVNDGK-QASW 501

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV-LHEKPE--L 74
             V+ A+G +   +   + +  +    +   + +D+ +T+I +++A GDV         L
Sbjct: 221 SCVITAVGVKPNLD--FIKDTEIAS--KRGILVNDHMETSIKDIYACGDVAEFYGKNPGL 276

Query: 75  TPVAVQAGKLLAARLYGNGTT 95
             +A + G++      G   +
Sbjct: 277 INIANKQGEVAGLNACGEDAS 297

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 18/100 (18%)

Query: 18  DTVLMAIGRRALTE--ETA---VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV-LHEK 71
           D V+ A+G R  TE    A   V+  G+ V          + +T+  N++A+GD    + 
Sbjct: 233 DLVVSAVGLRPRTELAFAAGLAVNR-GIVV--------DRSLRTSHANIYALGDCAEVDG 283

Query: 72  P--ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTP 109
                    +   + LA  L G   +Q+ Y  +  TV TP
Sbjct: 284 LNLLYVMPLMACARALAQTLAG-NPSQVAYGPMPVTVKTP 322

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPE-NAKIDSDNEQTNIPNVFAVGDV 67
           D V+ A+G        A     +KV       +D   + TN+  VFA GD+
Sbjct: 368 DLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 13/84 (15%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKV---IPENAKIDSDNEQTNIPNVFAVGD-VLHEKP- 72
              + AIG     +      +G+     I     ID DN +T+  +V+A+GD   +    
Sbjct: 224 KVKICAIGIVPNVD--LARRSGIHTGRGI----LID-DNFRTSAKDVYAIGDCAEYSGII 276

Query: 73  -ELTPVAVQAGKLLAARLYGNGTT 95
                 A++  ++LA  L G    
Sbjct: 277 AGTAKAAMEQARVLADILKGEPRR 300

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.98
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.97
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.97
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.84
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.82
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.8
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.77
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.76
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.66
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.63
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.61
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.5
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.48
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.46
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.42
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.42
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.4
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.4
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.4
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.37
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.36
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.36
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.34
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.34
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.32
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.32
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.3
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.29
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.29
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.28
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.27
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.26
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.26
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.23
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.22
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.17
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.17
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.12
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.06
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.04
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.99
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.93
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.9
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.89
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.85
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.58
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.58
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.38
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.23
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.18
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.03
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.73
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.54
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.11
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.44
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.03
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	95.64
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	95.52
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.28
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	95.09
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	94.52
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.35
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	92.65
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.6
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	92.5
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	92.02
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	91.66
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	90.68
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	87.41
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	85.39
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	83.47
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	82.44
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	82.05
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	81.6

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=1e-44  Score=368.71  Aligned_cols=239  Identities=37%  Similarity=0.646  Sum_probs=161.5

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCe-eecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAK-IDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~-I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      +..+++.++++|.||+|+||+||++.|+|+++|++++ ++|. |.||+ +|||+|||||+|||+.+.++|+|+|.+||++
T Consensus       298 v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~-~~~~~i~vd~~~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~  376 (542)
T 4b1b_A          298 VEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVN-KSNNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEI  376 (542)
T ss_dssp             EEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEE-TTTTEECCCTTSBCSSTTEEECTTSBTTCCCCHHHHHHHHHH
T ss_pred             EEEcCCCeEEEEEEEEcccccCCccccCcccceeeec-ccCceEeccccccccCCCeEEeccccCCchhHHHHHHHHHHH
Confidence            4456677889999999999999999999999999998 5554 57888 9999999999999994457999999999999


Q ss_pred             HHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825          85 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK  164 (332)
Q Consensus        85 AA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  164 (332)
                      +++|++|.....+++..+|+++|++|++|+|||||+||+++++..++.++...+.+.......+.            .  
T Consensus       377 aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~------------~--  442 (542)
T 4b1b_A          377 LARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQ------------K--  442 (542)
T ss_dssp             HHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHCTTTEEEEEC----------------------------
T ss_pred             HHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhh------------h--
Confidence            99999998777789999999999999999999999999999876677766544332221110000            0  


Q ss_pred             CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825         165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (332)
                                    .++.                                         ..       ..+      .  
T Consensus       443 --------------~~~~-----------------------------------------~~-------~~~------~--  452 (542)
T 4b1b_A          443 --------------HIRA-----------------------------------------QK-------DEY------D--  452 (542)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------hhhc-----------------------------------------cc-------ccc------c--
Confidence                          0000                                         00       000      0  


Q ss_pred             cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCC
Q psy3825         245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTP  324 (332)
Q Consensus       245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~  324 (332)
                      ..+.++||+|+|+.++++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|+|.+++.+.+++.+...
T Consensus       453 ~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~t~~~g~~~~~  532 (542)
T 4b1b_A          453 LDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAESFMNLFVTISSGLSYAA  532 (542)
T ss_dssp             -----CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC--------------------------
T ss_pred             ccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccCCcCCCHHHHHHHHHHHHHcCCCHHH
Confidence            12467899999976467999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCC
Q psy3825         325 QSCCRP  330 (332)
Q Consensus       325 ~~~~~~  330 (332)
                      ++||..
T Consensus       533 ~~~c~g  538 (542)
T 4b1b_A          533 KGGCGG  538 (542)
T ss_dssp             ------
T ss_pred             ccCCCC
Confidence            999973

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=7.4e-42  Score=342.26  Aligned_cols=219  Identities=53%  Similarity=0.935  Sum_probs=190.2

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      .++++|.||+|+|++||+++|+++++|+++++++|+|.||+ +||++|+|||+|||+.+.+++++.|..||++||+||+|
T Consensus       300 ~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g  379 (519)
T 3qfa_A          300 IEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYA  379 (519)
T ss_dssp             EEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHS
T ss_pred             EEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence            46789999999999999999888999999962368999999 99999999999999856789999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      ......++..+|+++|++|++|+|||||+||+++++..++++.+..|.+.....                          
T Consensus       380 ~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~--------------------------  433 (519)
T 3qfa_A          380 GSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTI--------------------------  433 (519)
T ss_dssp             CCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHT--------------------------
T ss_pred             CCCccCCCCcCcEEEECCCceEEecCCHHHHHhhCCCCCEEEEEEeccchhhhh--------------------------
Confidence            766667899999999999999999999999999865445776554443321100                          


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                              ...+.++|
T Consensus       434 ------------------------------------------------------------------------~~~~~~~g  441 (519)
T 3qfa_A          434 ------------------------------------------------------------------------PSRDNNKC  441 (519)
T ss_dssp             ------------------------------------------------------------------------TTCCTTTE
T ss_pred             ------------------------------------------------------------------------hccCCCcE
Confidence                                                                                    01134679


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR  329 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~  329 (332)
                      |+|||+|++++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..+.+++++|+++....||.
T Consensus       442 ~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~~~~~~~~~~~~~  519 (519)
T 3qfa_A          442 YAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGSCG  519 (519)
T ss_dssp             EEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGCCCBTTTTCCCCCCCTTC
T ss_pred             EEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHHhhhhcCCChhhccCCC
Confidence            999999932589999999999999999999999999999999999999999999999999999999999999889984

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=7.6e-42  Score=337.04  Aligned_cols=209  Identities=64%  Similarity=1.034  Sum_probs=182.2

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ..++++|.||+|+|++||+++|+|+++|++++ + |+|.||+ +||++|+|||+|||+.+.+++++.|..||++||+||+
T Consensus       273 ~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~-G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  350 (483)
T 3dgh_A          273 ESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ-K-DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLY  350 (483)
T ss_dssp             EEEEEESEEEECSCEEECCGGGTGGGTTCCCB-T-TBBCCCTTCBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             eeEEEcCEEEECcccccCcCcCCchhcCcccc-C-CEEEECcCCccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHc
Confidence            34799999999999999999988899999998 6 9999999 9999999999999985668999999999999999999


Q ss_pred             CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      |......++..+|+++|++|++|+|||||+||++++|.+.+++.+..|.+..                            
T Consensus       351 g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~----------------------------  402 (483)
T 3dgh_A          351 GGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTE----------------------------  402 (483)
T ss_dssp             SCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCCGG----------------------------
T ss_pred             CCCCCcCCCCCCCEEEECCCccEEEeCCHHHHHhhCCCCCEEEEEEeecchh----------------------------
Confidence            8766667899999999999999999999999999866445666544333221                            


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                    +.++                        ..+.+.
T Consensus       403 ----------------------------------------------~~~~------------------------~~~~~~  412 (483)
T 3dgh_A          403 ----------------------------------------------FFIP------------------------QKSVRY  412 (483)
T ss_dssp             ----------------------------------------------GTTT------------------------TCCCTT
T ss_pred             ----------------------------------------------hhhh------------------------ccCCCc
Confidence                                                          0001                        113467


Q ss_pred             eEEEEEEecCC-CCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCC
Q psy3825         251 CYLKVVCERAA-PQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGED  321 (332)
Q Consensus       251 ~~~klv~~~~~-~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~  321 (332)
                      ||+||++| ++ +++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..+.++|+||+|
T Consensus       413 ~~~k~i~~-~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~  483 (483)
T 3dgh_A          413 CYLKAVAE-RHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAITKRSGLD  483 (483)
T ss_dssp             CEEEEEEE-SSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGGCCCBTTTBTC
T ss_pred             EEEEEEEe-cCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHhHHhccCC
Confidence            99999999 65 899999999999999999999999999999999999999999999999999999988765

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=1.4e-41  Score=336.02  Aligned_cols=214  Identities=55%  Similarity=0.973  Sum_probs=184.1

Q ss_pred             EEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhCC
Q psy3825          14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGN   92 (332)
Q Consensus        14 ~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G~   92 (332)
                      ++++|.||+|+|++||+++|+++++|+++++++|+|.||+ |||++|||||+|||+.+.+++++.|..||++||.||+|.
T Consensus       273 ~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~  352 (488)
T 3dgz_A          273 TGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGK  352 (488)
T ss_dssp             EEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred             EEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence            5899999999999999999888999999862378999999 999999999999997567889999999999999999987


Q ss_pred             CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCC
Q psy3825          93 GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQ  172 (332)
Q Consensus        93 ~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  172 (332)
                      .....++..+|+++|++|++|+|||||+||++++|.+.+++.+..|.+....                            
T Consensus       353 ~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~----------------------------  404 (488)
T 3dgz_A          353 SSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFT----------------------------  404 (488)
T ss_dssp             CCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECCCHHHH----------------------------
T ss_pred             CCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCCCcEEEEEccccchhhh----------------------------
Confidence            6666789999999999999999999999999876644566655433322110                            


Q ss_pred             CCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceE
Q psy3825         173 RNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY  252 (332)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (332)
                                                                                            ++..+.++||
T Consensus       405 ----------------------------------------------------------------------~~~~~~~~g~  414 (488)
T 3dgz_A          405 ----------------------------------------------------------------------VADRDASQCY  414 (488)
T ss_dssp             ----------------------------------------------------------------------HTTCCCTTCE
T ss_pred             ----------------------------------------------------------------------hhccCCCcEE
Confidence                                                                                  0011346899


Q ss_pred             EEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCC
Q psy3825         253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQ  325 (332)
Q Consensus       253 ~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~  325 (332)
                      +||++|++++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|++..+.++|+||++++.+
T Consensus       415 ~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~  487 (488)
T 3dgz_A          415 IKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLHISKRSGLEPTVT  487 (488)
T ss_dssp             EEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSTHHHHTCCEETTTTCCCC--
T ss_pred             EEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHHHHhhcCCCcccC
Confidence            9999993378999999999999999999999999999999999999999999999999999999999887654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=2.9e-39  Score=317.79  Aligned_cols=197  Identities=37%  Similarity=0.640  Sum_probs=173.2

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ +||++|||||+|||+ +.+++++.|..||++||+||+|
T Consensus       278 ~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~aa~~i~~  355 (478)
T 3dk9_A          278 MIPDVDCLLWAIGRVPNTKDLSLNKLGIQTD-DKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPVAIAAGRKLAHRLFE  355 (478)
T ss_dssp             EEEEESEEEECSCEEESCTTSCGGGGTCCBC-TTCCBCCCTTCBCSSTTEEECGGGG-CSSCCHHHHHHHHHHHHHHHHS
T ss_pred             eEEEcCEEEEeeccccCCCCCCchhcCCeeC-CCCCEeeCCCcccCCCCEEEEEecC-CCCccHhHHHHHHHHHHHHHcC
Confidence            7899999999999999999888899999998 799999999 999999999999999 7899999999999999999998


Q ss_pred             C-CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          92 N-GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        92 ~-~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      . .....++..+|+++|++|++|+||+||+||+++++..++.+++..|.+..         |+                 
T Consensus       356 ~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~---------~~-----------------  409 (478)
T 3dk9_A          356 YKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMY---------HA-----------------  409 (478)
T ss_dssp             CCTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGG---------GG-----------------
T ss_pred             CCCcccCCCCCCCeEEECCCceEEeeCCHHHHHhhCCCccEEEEEeecCcch---------hh-----------------
Confidence            6 34567899999999999999999999999999865445666544333211         00                 


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                                      .         ..+.+.
T Consensus       410 ----------------------------------------------------------------~---------~~~~~~  416 (478)
T 3dk9_A          410 ----------------------------------------------------------------V---------TKRKTK  416 (478)
T ss_dssp             ----------------------------------------------------------------G---------CSSCCC
T ss_pred             ----------------------------------------------------------------h---------hcCCCc
Confidence                                                                            0         125678


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHH
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR  311 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~  311 (332)
                      |++||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..
T Consensus       417 g~~k~i~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  476 (478)
T 3dk9_A          417 CVMKMVCA-NKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT  476 (478)
T ss_dssp             EEEEEEEE-TTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGS
T ss_pred             EEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHh
Confidence            99999999 7899999999999999999999999999999999999999999999998854

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.1e-39  Score=316.84  Aligned_cols=202  Identities=33%  Similarity=0.515  Sum_probs=177.3

Q ss_pred             ee-cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825           7 AS-MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus         7 v~-~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      +. +++++ +++|.||+|+|++||+++|+++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||++
T Consensus       247 v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~t~~~~iya~GD~~-~~~~~~~~A~~~g~~  323 (463)
T 4dna_A          247 ATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTN-ELGAIIVDAFSRTSTPGIYALGDVT-DRVQLTPVAIHEAMC  323 (463)
T ss_dssp             EEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBC-TTSCBCCCTTCBCSSTTEEECSGGG-SSCCCHHHHHHHHHH
T ss_pred             EEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceEC-CCCCEeECcCCCCCCCCEEEEEecC-CCCCChHHHHHHHHH
Confidence            45 66676 99999999999999999988899999998 789999999 999999999999999 678999999999999


Q ss_pred             HHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825          85 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK  164 (332)
Q Consensus        85 AA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  164 (332)
                      +|+||+|......++..+|+++|++|++++||+||+||+++ | .++++....|.+.         .|+           
T Consensus       324 aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~-~-~~~~~~~~~~~~~---------~~~-----------  381 (463)
T 4dna_A          324 FIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARK-F-QEIEVYRAEFRPM---------KAT-----------  381 (463)
T ss_dssp             HHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHH-S-SEEEEEEEEECCT---------THH-----------
T ss_pred             HHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHc-C-CCeEEEEEecccc---------chh-----------
Confidence            99999987656678899999999999999999999999998 4 2466654433211         111           


Q ss_pred             CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825         165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (332)
                                                                                            +         
T Consensus       382 ----------------------------------------------------------------------~---------  382 (463)
T 4dna_A          382 ----------------------------------------------------------------------L---------  382 (463)
T ss_dssp             ----------------------------------------------------------------------H---------
T ss_pred             ----------------------------------------------------------------------h---------
Confidence                                                                                  0         


Q ss_pred             cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825         245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT  313 (332)
Q Consensus       245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  313 (332)
                      ..+.+.|++||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..+.
T Consensus       383 ~~~~~~~~~k~~~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  450 (463)
T 4dna_A          383 SGRKEKTIMKLVVN-AADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMY  450 (463)
T ss_dssp             HCCCCCEEEEEEEE-TTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGTCCC
T ss_pred             cCCCceEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHh
Confidence            12567899999999 789999999999999999999999999999999999999999999999998765

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.7e-38  Score=313.71  Aligned_cols=199  Identities=28%  Similarity=0.429  Sum_probs=175.2

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      .+++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||++||++|+
T Consensus       284 ~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~aa~~i~  361 (491)
T 3urh_A          284 ATTLDAEVVLIATGRKPSTDGLGLAKAGVVLD-SRGRVEIDRHFQTSIAGVYAIGDVV-RGPMLAHKAEDEGVAVAEIIA  361 (491)
T ss_dssp             CEEEEESEEEECCCCEECCTTSCHHHHTCCBC-TTSCBCCCTTCBCSSTTEEECGGGS-SSCCCHHHHHHHHHHHHHHHT
T ss_pred             eEEEEcCEEEEeeCCccCCCccCchhcCceEC-CCCCEeECCCCCCCCCCEEEEEecC-CCccchhHHHHHHHHHHHHHc
Confidence            37899999999999999999988899999998 789999999 999999999999999 788999999999999999999


Q ss_pred             CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      |.. ..+++..+|+++|++|++|+||+||+||+++ |. ++++....|...         .|+                 
T Consensus       362 g~~-~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g~-~~~~~~~~~~~~---------~~~-----------------  412 (491)
T 3urh_A          362 GQA-GHVNYDVIPGVVYTQPEVASVGKTEEELKAA-GV-AYKIGKFPFTAN---------GRA-----------------  412 (491)
T ss_dssp             TSC-CCCCTTCCCEEECSSSCEEEEECCHHHHHHT-TC-CEEEEEEEGGGC---------HHH-----------------
T ss_pred             CCC-cccCCCCCCEEEEccCCeEEEeCCHHHHHhC-CC-CEEEEEEecCcc---------hhh-----------------
Confidence            864 4578889999999999999999999999998 53 466654433211         111                 


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                                      .         ..+.++
T Consensus       413 ----------------------------------------------------------------~---------~~~~~~  419 (491)
T 3urh_A          413 ----------------------------------------------------------------R---------AMLQTD  419 (491)
T ss_dssp             ----------------------------------------------------------------H---------HTTCCC
T ss_pred             ----------------------------------------------------------------h---------cCCCCc
Confidence                                                                            0         014577


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      |++||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus       420 g~~k~i~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  483 (491)
T 3urh_A          420 GFVKILAD-KETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAALS  483 (491)
T ss_dssp             CEEEEEEE-TTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHH
T ss_pred             EEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHH
Confidence            99999999 78999999999999999999999999999999999999999999999999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=7.2e-39  Score=324.00  Aligned_cols=221  Identities=46%  Similarity=0.832  Sum_probs=183.4

Q ss_pred             CCeeEE--EcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825          10 DKVFED--TYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA   86 (332)
Q Consensus        10 ~dg~~I--~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA   86 (332)
                      .+++++  ++|.||+|+|++||+++|+++++|++++ ++|+|.||+ |||++|+|||+|||+.+.+.+++.|..||+.||
T Consensus       375 ~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~-~~G~i~vd~~~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa  453 (598)
T 2x8g_A          375 TDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLD-KNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLA  453 (598)
T ss_dssp             TTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBC-TTSCBCCCTTSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHH
T ss_pred             CCCcEEeccCCEEEEEeCCccccCccCchhcCceEC-CCCcEEeCCCCcCCCCCEEEEeeecCCCCccHHHHHHhHHHHH
Confidence            344444  5999999999999999887788999998 789999999 999999999999996466889999999999999


Q ss_pred             HHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825          87 ARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT  166 (332)
Q Consensus        87 ~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  166 (332)
                      .||+|......++..+|+++|++|++++||+||++|++.+|.+++++.+..|.+....                      
T Consensus       454 ~~i~~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~----------------------  511 (598)
T 2x8g_A          454 RRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWT----------------------  511 (598)
T ss_dssp             HHHHHCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCTHHH----------------------
T ss_pred             HHHhcCCCcccCCCCCcEEEECCCceEEEeCCHHHHHhhCCCCcEEEEEEeccchhHH----------------------
Confidence            9999765556788899999999999999999999999886644577765444322100                      


Q ss_pred             ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825         167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (332)
                                                                                                  +...
T Consensus       512 ----------------------------------------------------------------------------~~~~  515 (598)
T 2x8g_A          512 ----------------------------------------------------------------------------VAHR  515 (598)
T ss_dssp             ----------------------------------------------------------------------------HTTC
T ss_pred             ----------------------------------------------------------------------------hhcC
Confidence                                                                                        0011


Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCc
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQS  326 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~  326 (332)
                      +...|++|++++++++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..++.++.++.++...+
T Consensus       516 ~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~~  595 (598)
T 2x8g_A          516 EDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLHVTKKSGVSPIVSG  595 (598)
T ss_dssp             CSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCCBSTTCCCCCC--
T ss_pred             CCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHHHHhhhcccchhhcc
Confidence            23679999999933689999999999999999999999999999999999999999999999999988766678899999


Q ss_pred             ccC
Q psy3825         327 CCR  329 (332)
Q Consensus       327 ~~~  329 (332)
                      ||.
T Consensus       596 ~~~  598 (598)
T 2x8g_A          596 CCG  598 (598)
T ss_dssp             ---
T ss_pred             cCC
Confidence            994

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=2.1e-38  Score=310.93  Aligned_cols=198  Identities=29%  Similarity=0.502  Sum_probs=173.6

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||++.|.++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||++||+||+|
T Consensus       265 ~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~-~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A~~~g~~aa~~i~g  342 (476)
T 3lad_A          265 KSQAFDKLIVAVGRRPVTTDLLAADSGVTLD-ERGFIYVDDYCATSVPGVYAIGDVV-RGAMLAHKASEEGVVVAERIAG  342 (476)
T ss_dssp             EEEEESEEEECSCEEECCTTCCSSCCSCCBC-TTSCBCCCTTSBCSSTTEEECGGGS-SSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEeeCCcccCCCCCccccCcccc-CCCCEeeCCCcccCCCCEEEEEccC-CCcccHHHHHHHHHHHHHHhcC
Confidence            6799999999999999999877889999998 789999999 999999999999999 7889999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .. ..+++..+|+++|++|++|+|||||+||++. |. ++.+....|...         .|.                  
T Consensus       343 ~~-~~~~~~~~p~~~~~~~~~a~vGlte~~a~~~-g~-~~~~~~~~~~~~---------~~~------------------  392 (476)
T 3lad_A          343 HK-AQMNYDLIPAVIYTHPEIAGVGKTEQALKAE-GV-AINVGVFPFAAS---------GRA------------------  392 (476)
T ss_dssp             CC-CCCCTTCCCEEECSSSEEEEEECCHHHHHHT-TC-CEEEEEEEGGGC---------HHH------------------
T ss_pred             CC-cccCCCCCCEEEECcCCEEEeeCCHHHHHhc-CC-CEEEEEEecccc---------chh------------------
Confidence            64 4578889999999999999999999999997 53 355544322211         111                  


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                     .         ..+.+.|
T Consensus       393 ---------------------------------------------------------------~---------~~~~~~~  400 (476)
T 3lad_A          393 ---------------------------------------------------------------M---------AANDTAG  400 (476)
T ss_dssp             ---------------------------------------------------------------H---------HHTCCCC
T ss_pred             ---------------------------------------------------------------e---------ecCCCcE
Confidence                                                                           0         0145679


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ++|+++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus       401 ~~k~~~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  463 (476)
T 3lad_A          401 FVKVIAD-AKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALA  463 (476)
T ss_dssp             EEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHH
T ss_pred             EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHH
Confidence            9999999 78999999999999999999999999999999999999999999999999999874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=1.1e-38  Score=315.17  Aligned_cols=203  Identities=33%  Similarity=0.511  Sum_probs=176.6

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+.+++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||+++
T Consensus       267 v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A~~~g~~a  344 (484)
T 3o0h_A          267 VVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVN-EFGAVVVDEKMTTNVSHIWAVGDVT-GHIQLTPVAIHDAMCF  344 (484)
T ss_dssp             EEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBC-TTSCBCCCTTSBCSSTTEEECGGGG-TSCCCHHHHHHHHHHH
T ss_pred             EEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceEC-CCCCEeECCCCCCCCCCEEEEEecC-CCCcCHHHHHHHHHHH
Confidence            5566778899999999999999999988889999998 789999999 999999999999999 6789999999999999


Q ss_pred             HHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCC
Q psy3825          86 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKP  165 (332)
Q Consensus        86 A~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  165 (332)
                      |.||+|.....+++..+|+++|++|++|+|||||++|+++ | .++++....|.+..         |+            
T Consensus       345 a~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~-g-~~~~~~~~~~~~~~---------~~------------  401 (484)
T 3o0h_A          345 VKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHR-Y-KRVEIYRTVFRPMR---------NV------------  401 (484)
T ss_dssp             HHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHHHHHH-C-SEEEEEEEEECCHH---------HH------------
T ss_pred             HHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHc-C-CCEEEEEecCCcch---------hh------------
Confidence            9999987656678999999999999999999999999998 4 24666554332211         11            


Q ss_pred             cccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccccccc
Q psy3825         166 TEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQ  245 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (332)
                                                                                           +         .
T Consensus       402 ---------------------------------------------------------------------~---------~  403 (484)
T 3o0h_A          402 ---------------------------------------------------------------------L---------S  403 (484)
T ss_dssp             ---------------------------------------------------------------------H---------H
T ss_pred             ---------------------------------------------------------------------c---------c
Confidence                                                                                 0         1


Q ss_pred             CCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH
Q psy3825         246 RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT  313 (332)
Q Consensus       246 ~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  313 (332)
                      .+.++|++||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..++
T Consensus       404 ~~~~~~~~k~~~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~  470 (484)
T 3o0h_A          404 GSPEKMFMKLVVD-GESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMY  470 (484)
T ss_dssp             TCCCCEEEEEEEE-TTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGCCC
T ss_pred             CCCCcEEEEEEEE-CCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHh
Confidence            2467899999999 789999999999999999999999999999999999999999999999998765

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=3.3e-38  Score=313.55  Aligned_cols=201  Identities=21%  Similarity=0.272  Sum_probs=175.7

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecC-C-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD-N-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD-e-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      +++++|.||+|+|++||+++|+++++|++++ ++|+|.|| + +||++|+|||+|||+ +.+++++.|..||++||.||+
T Consensus       259 ~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd~~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~aa~~i~  336 (492)
T 3ic9_A          259 TTESFQYVLAATGRKANVDKLGLENTSIELD-KKNSPLFDELTLQTSVDHIFVAGDAN-NTLTLLHEAADDGKVAGTNAG  336 (492)
T ss_dssp             EEEEESEEEECSCCEESCSSSCGGGSCCCBC-TTCCBCCCTTTCBCSSTTEEECGGGG-TSSCSHHHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEEeeCCccCCCCCChhhcCCEEC-CCCCEeECcccccCCCCCEEEEEecC-CCCccHHHHHHHHHHHHHHHc
Confidence            7899999999999999999988899999998 89999999 8 999999999999999 778899999999999999999


Q ss_pred             C-CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCC---CEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825          91 G-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGAD---NLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT  166 (332)
Q Consensus        91 G-~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  166 (332)
                      + ......++..+|+++|++|++|+||+||+||++.+|.|   ++++....|...         .|.             
T Consensus       337 ~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~---------~~a-------------  394 (492)
T 3ic9_A          337 AYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQ---------GRS-------------  394 (492)
T ss_dssp             HTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGC---------HHH-------------
T ss_pred             CCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccc---------hhh-------------
Confidence            7 34455778889999999999999999999999986432   366655443221         111             


Q ss_pred             ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825         167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (332)
                                                                                          .         ..
T Consensus       395 --------------------------------------------------------------------~---------~~  397 (492)
T 3ic9_A          395 --------------------------------------------------------------------R---------VM  397 (492)
T ss_dssp             --------------------------------------------------------------------H---------HT
T ss_pred             --------------------------------------------------------------------h---------hc
Confidence                                                                                0         12


Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +.+.|++||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus       398 ~~~~g~~kli~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~  465 (492)
T 3ic9_A          398 GKNKGLLNVYAD-RTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTALRD  465 (492)
T ss_dssp             TCCCCEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSCCCTTCTHHHHHHHHHH
T ss_pred             CCCcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCChHHHHHHHHHH
Confidence            457899999999 78999999999999999999999999999999999999999999999999998754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=9.1e-39  Score=317.41  Aligned_cols=217  Identities=29%  Similarity=0.495  Sum_probs=185.2

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+++++++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++|
T Consensus       267 v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~-~~G~I~Vd~~~~t~~~~IyA~GD~~-~~~~l~~~A~~~g~~a  344 (490)
T 1fec_A          267 VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVA-KNGAIKVDAYSKTNVDNIYAIGDVT-DRVMLTPVAINEGAAF  344 (490)
T ss_dssp             EEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBC-TTSCBCCCTTCBCSSTTEEECGGGG-CSCCCHHHHHHHHHHH
T ss_pred             EEECCCcEEEcCEEEEccCCCcCccccCchhcCccCC-CCCCEEECCCCccCCCCEEEEeccC-CCccCHHHHHHHHHHH
Confidence            4556677899999999999999999777788999998 789999999 999999999999999 6788999999999999


Q ss_pred             HHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCC
Q psy3825          86 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKP  165 (332)
Q Consensus        86 A~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  165 (332)
                      |.||+|......++..+|+++|++|++++||+||++|++. + +++++.+..|.+..         |.            
T Consensus       345 a~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-~-~~~~~~~~~~~~~~---------~~------------  401 (490)
T 1fec_A          345 VDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKK-Y-DQVAVYESSFTPLM---------HN------------  401 (490)
T ss_dssp             HHHHHSSCCCCCCCSSCCEEECCSSCEEEEECCHHHHHHH-C-SEEEEEEEEECCHH---------HH------------
T ss_pred             HHHhcCCCCCcCCCCCccEEEECCCCeEEEeCCHHHHHhc-C-CCEEEEEeecChhh---------hh------------
Confidence            9999986555678899999999999999999999999987 4 24666544332211         00            


Q ss_pred             cccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccccccc
Q psy3825         166 TEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQ  245 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (332)
                                                                                                   + .
T Consensus       402 -----------------------------------------------------------------------------~-~  403 (490)
T 1fec_A          402 -----------------------------------------------------------------------------I-S  403 (490)
T ss_dssp             -----------------------------------------------------------------------------H-H
T ss_pred             -----------------------------------------------------------------------------h-h
Confidence                                                                                         0 1


Q ss_pred             CCCcceEE-EEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH-hhhccCCCCC
Q psy3825         246 RNPQRCYL-KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT-ITKRSGEDPT  323 (332)
Q Consensus       246 ~~~~~~~~-klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~-~~~~~~~~~~  323 (332)
                      .+.+.+|+ |++++ +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++ .++++++++.
T Consensus       404 ~~~~~~~~~kli~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~  482 (490)
T 1fec_A          404 GSTYKKFMVRIVTN-HADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFYEKGKR  482 (490)
T ss_dssp             SCTTCCEEEEEEEE-TTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCCSCSEEEETTEE
T ss_pred             cCCCeEEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHHHHHhhcCcccc
Confidence            23577999 99999 789999999999999999999999999999999999999999999999999987 6677777765


Q ss_pred             CCcc
Q psy3825         324 PQSC  327 (332)
Q Consensus       324 ~~~~  327 (332)
                      ...|
T Consensus       483 ~~~~  486 (490)
T 1fec_A          483 VEKI  486 (490)
T ss_dssp             ECC-
T ss_pred             cccc
Confidence            5555

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=1.4e-38  Score=316.87  Aligned_cols=220  Identities=28%  Similarity=0.461  Sum_probs=185.7

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+++|+++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++|
T Consensus       271 v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~-~~G~i~Vd~~~~t~~~~IyA~GD~~-~~~~l~~~A~~~g~~a  348 (495)
T 2wpf_A          271 VTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLT-PKGGVQVDEFSRTNVPNIYAIGDIT-DRLMLTPVAINEGAAL  348 (495)
T ss_dssp             EEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBC-TTSSBCCCTTCBCSSTTEEECGGGG-CSCCCHHHHHHHHHHH
T ss_pred             EEECCCcEEEcCEEEECCCCcccccccchhhcCccCC-CCCCEEECCCCccCCCCEEEEeccC-CCccCHHHHHHHHHHH
Confidence            4556777899999999999999999877889999998 789999999 999999999999999 6788999999999999


Q ss_pred             HHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCC
Q psy3825          86 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKP  165 (332)
Q Consensus        86 A~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  165 (332)
                      |.||+|......++..+|+++|++|++++||+||++|++. + +++++.+..|.+..         |+            
T Consensus       349 a~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~-~~~~v~~~~~~~~~---------~~------------  405 (495)
T 2wpf_A          349 VDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKE-F-EKVAVYMSSFTPLM---------HN------------  405 (495)
T ss_dssp             HHHHHSSCCCCCCCSSCEEEECCSSCEEEEECCHHHHHHH-S-SEEEEEEEEECCTH---------HH------------
T ss_pred             HHHhcCCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhc-C-CCEEEEEEecCchh---------hh------------
Confidence            9999986555678999999999999999999999999987 4 24666544332211         00            


Q ss_pred             cccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccccccc
Q psy3825         166 TEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQ  245 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (332)
                                                                                                   + .
T Consensus       406 -----------------------------------------------------------------------------~-~  407 (495)
T 2wpf_A          406 -----------------------------------------------------------------------------I-S  407 (495)
T ss_dssp             -----------------------------------------------------------------------------H-H
T ss_pred             -----------------------------------------------------------------------------h-h
Confidence                                                                                         0 1


Q ss_pred             CCCcceE-EEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHH-hhhccCCCCC
Q psy3825         246 RNPQRCY-LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT-ITKRSGEDPT  323 (332)
Q Consensus       246 ~~~~~~~-~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~-~~~~~~~~~~  323 (332)
                      .+.+.|| +||++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.+++ .+++++.++.
T Consensus       408 ~~~~~~~~~klv~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~  486 (495)
T 2wpf_A          408 GSKYKKFVAKIVTN-HSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEK  486 (495)
T ss_dssp             SCTTCCEEEEEEEE-TTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCSCSEEEETTEE
T ss_pred             cCCCcEEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHHhhhcCCchh
Confidence            2357799 999999 789999999999999999999999999999999999999999999999999887 5666666655


Q ss_pred             CCcccCC
Q psy3825         324 PQSCCRP  330 (332)
Q Consensus       324 ~~~~~~~  330 (332)
                      ...|-..
T Consensus       487 ~~~~~~~  493 (495)
T 2wpf_A          487 MEKLPDS  493 (495)
T ss_dssp             ESSCC--
T ss_pred             hcCCCCC
Confidence            5555433

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=7.3e-38  Score=307.83  Aligned_cols=199  Identities=23%  Similarity=0.304  Sum_probs=174.1

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||++ |+++++|++++ ++| |.||+ |||++|+|||+|||+ +.+++++.|..||++||.||+|
T Consensus       257 ~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~-~~G-i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A~~~g~~aa~~i~~  332 (466)
T 3l8k_A          257 KSIFTNSVVLAAGRRPVIP-EGAREIGLSIS-KTG-IVVDETMKTNIPNVFATGDAN-GLAPYYHAAVRMSIAAANNIMA  332 (466)
T ss_dssp             EEEEESCEEECCCEEECCC-TTTGGGTCCBC-SSS-BCCCTTCBCSSTTEEECGGGT-CSCCSHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCEEEECcCCCcccc-cchhhcCceeC-CCC-EeECCCccCCCCCEEEEEecC-CCCccHhHHHHHHHHHHHHHhC
Confidence            3899999999999999999 77889999998 789 99999 999999999999999 6789999999999999999998


Q ss_pred             C--CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccc
Q psy3825          92 N--GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFF  169 (332)
Q Consensus        92 ~--~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  169 (332)
                      .  .....++..+|+++|++|++++||+||++|++. |. ++++....+...         .|.                
T Consensus       333 ~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~-g~-~~~~~~~~~~~~---------~~~----------------  385 (466)
T 3l8k_A          333 NGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKM-GI-EIVEAEYNMEED---------VSA----------------  385 (466)
T ss_dssp             TTSCCCCCCSTTSCEEECSSSCEEEEECCHHHHHHH-TC-CEEEEEEEGGGS---------HHH----------------
T ss_pred             CCCCccccCCCCCcEEEECCCCeEEecCCHHHHHhC-CC-CEEEEEEEcccC---------hhh----------------
Confidence            6  555678899999999999999999999999998 53 466654433211         111                


Q ss_pred             cCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCc
Q psy3825         170 IPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQ  249 (332)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (332)
                                                                                       +         ..+.+
T Consensus       386 -----------------------------------------------------------------~---------~~~~~  391 (466)
T 3l8k_A          386 -----------------------------------------------------------------Q---------IYGQK  391 (466)
T ss_dssp             -----------------------------------------------------------------H---------HHTCC
T ss_pred             -----------------------------------------------------------------e---------ecCCC
Confidence                                                                             0         01457


Q ss_pred             ceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhc
Q psy3825         250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKR  317 (332)
Q Consensus       250 ~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~  317 (332)
                      +||+|+++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++...-
T Consensus       392 ~g~~k~i~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~  458 (466)
T 3l8k_A          392 EGVLKLIFE-RGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTARKVI  458 (466)
T ss_dssp             CCEEEEEEE-TTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHHHHHHHHHH
T ss_pred             eEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHHHHHHHHHH
Confidence            899999999 7899999999999999999999999999999999999999999999999999987644

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=4.5e-38  Score=308.48  Aligned_cols=203  Identities=38%  Similarity=0.637  Sum_probs=174.9

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+++++++++|.||+|+|++||++.|+++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||+++
T Consensus       244 v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~-~~g~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~a  321 (450)
T 1ges_A          244 LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTN-EKGYIVVDKYQNTNIEGIYAVGDNT-GAVELTPVAVAAGRRL  321 (450)
T ss_dssp             EEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBC-TTSCBCCCTTSBCSSTTEEECSGGG-TSCCCHHHHHHHHHHH
T ss_pred             EEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceEC-CCCCEeECCCCccCCCCEEEEeccC-CCCccHHHHHHHHHHH
Confidence            4556777899999999999999999776788899998 789999999 999999999999998 6788999999999999


Q ss_pred             HHHHhCCCCcc-cccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825          86 AARLYGNGTTQ-MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK  164 (332)
Q Consensus        86 A~nI~G~~~~~-~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  164 (332)
                      |.||+|..... .++..+|+++|++|++++||+||++|++.+|.+++++....|.+..         |+           
T Consensus       322 a~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~---------~~-----------  381 (450)
T 1ges_A          322 SERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMY---------TA-----------  381 (450)
T ss_dssp             HHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHH---------HH-----------
T ss_pred             HHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCCcEEEEEEECchhh---------HH-----------
Confidence            99999865444 6888999999999999999999999998865335776654332211         10           


Q ss_pred             CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825         165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (332)
                                                                                            .         
T Consensus       382 ----------------------------------------------------------------------~---------  382 (450)
T 1ges_A          382 ----------------------------------------------------------------------V---------  382 (450)
T ss_dssp             ----------------------------------------------------------------------T---------
T ss_pred             ----------------------------------------------------------------------H---------
Confidence                                                                                  0         


Q ss_pred             cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHH
Q psy3825         245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR  311 (332)
Q Consensus       245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~  311 (332)
                      ..+.+.+|+|+++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+..
T Consensus       383 ~~~~~~~~~k~~~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  448 (450)
T 1ges_A          383 TTHRQPCRMKLVCV-GSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVT  448 (450)
T ss_dssp             SSSCCEEEEEEEEE-TTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred             hcCCCcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHHHh
Confidence            12457899999999 7899999999999999999999999999999999999999999999998754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-38  Score=308.72  Aligned_cols=205  Identities=34%  Similarity=0.637  Sum_probs=175.4

Q ss_pred             eecCCe-eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825           7 ASMDKV-FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus         7 v~~~dg-~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      +.+++| +++++|.||+|+|++||+ .|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++
T Consensus       263 v~~~~G~~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~~-~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~  339 (479)
T 2hqm_A          263 IHMNDSKSIDDVDELIWTIGRKSHL-GMGSENVGIKLN-SHDQIIADEYQNTNVPNIYSLGDVV-GKVELTPVAIAAGRK  339 (479)
T ss_dssp             EEETTSCEEEEESEEEECSCEEECC-CSSGGGGTCCBC-TTSCBCCCTTCBCSSTTEEECGGGT-TSSCCHHHHHHHHHH
T ss_pred             EEECCCcEEEEcCEEEECCCCCCcc-ccChhhcCceEC-CCCCEeECCCCccCCCCEEEEEecC-CCcccHHHHHHHHHH
Confidence            455667 789999999999999999 566788999998 789999999 999999999999998 678899999999999


Q ss_pred             HHHHHhCCC---CcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccc
Q psy3825          85 LAARLYGNG---TTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA  161 (332)
Q Consensus        85 AA~nI~G~~---~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  161 (332)
                      ||.||+|..   ....++..+|+++|++|++++||+||++|++.+|.+++++....|.+..         |+        
T Consensus       340 aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e~~a~~~~~~~~~~~~~~~~~~~~---------~~--------  402 (479)
T 2hqm_A          340 LSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMY---------YA--------  402 (479)
T ss_dssp             HHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGG---------GG--------
T ss_pred             HHHHhcCCCccCcccCCCCCCCeEEECCCCeEEEeCCHHHHHhcCCCCcEEEEEEeccHHH---------HH--------
Confidence            999999864   3456788899999999999999999999998866445776654332211         00        


Q ss_pred             cCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccc
Q psy3825         162 YYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF  241 (332)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (332)
                                                                                               .      
T Consensus       403 -------------------------------------------------------------------------~------  403 (479)
T 2hqm_A          403 -------------------------------------------------------------------------M------  403 (479)
T ss_dssp             -------------------------------------------------------------------------G------
T ss_pred             -------------------------------------------------------------------------h------
Confidence                                                                                     0      


Q ss_pred             ccccCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHh
Q psy3825         242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI  314 (332)
Q Consensus       242 ~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~  314 (332)
                         ..+.+.|++|+++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++.
T Consensus       404 ---~~~~~~~~~kli~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  472 (479)
T 2hqm_A          404 ---LSEKSPTRYKIVCA-GPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEELVTMRG  472 (479)
T ss_dssp             ---CSSCCCEEEEEEEE-TTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC-
T ss_pred             ---hcCCCcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHH
Confidence               12456799999999 7899999999999999999999999999999999999999999999999976654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.3e-37  Score=308.50  Aligned_cols=216  Identities=21%  Similarity=0.302  Sum_probs=177.9

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLL   85 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vA   85 (332)
                      +.+++++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++|
T Consensus       258 v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~-~~G~i~Vd~~~~t~~~~IyA~GD~~-~~~~l~~~A~~~g~~a  335 (499)
T 1xdi_A          258 VTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLG-RGNYLTVDRVSRTLATGIYAAGDCT-GLLPLASVAAMQGRIA  335 (499)
T ss_dssp             EEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCB-TTTBCCCCSSSBCSSTTEEECSGGG-TSCSCHHHHHHHHHHH
T ss_pred             EEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceEC-CCCCEEECCCcccCCCCEEEEeccC-CCcccHHHHHHHHHHH
Confidence            3446677899999999999999999888889999998 789999999 999999999999999 6788999999999999


Q ss_pred             HHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCC
Q psy3825          86 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKP  165 (332)
Q Consensus        86 A~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  165 (332)
                      |.||+|.....+++..+|+++|++|++++||+||++|++. |. ++++....|.         +..|.            
T Consensus       336 a~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~~~~~---------~~~~~------------  392 (499)
T 1xdi_A          336 MYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAG-SV-AARTIMLPLR---------TNARA------------  392 (499)
T ss_dssp             HHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHT-SS-CEEEEEEEST---------TSHHH------------
T ss_pred             HHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhC-CC-CEEEEEEecC---------cccce------------
Confidence            9999986345678889999999999999999999999987 43 3665543322         11111            


Q ss_pred             cccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccccccc
Q psy3825         166 TEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQ  245 (332)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (332)
                                                                                           .         .
T Consensus       393 ---------------------------------------------------------------------~---------~  394 (499)
T 1xdi_A          393 ---------------------------------------------------------------------K---------M  394 (499)
T ss_dssp             ---------------------------------------------------------------------H---------H
T ss_pred             ---------------------------------------------------------------------e---------e
Confidence                                                                                 0         1


Q ss_pred             CCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCC
Q psy3825         246 RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQ  325 (332)
Q Consensus       246 ~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~  325 (332)
                      .+...||+|++++ +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++....  . ...+
T Consensus       395 ~~~~~g~~k~~~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~--~-~~~~  470 (499)
T 1xdi_A          395 SEMRHGFVKIFCR-RSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM--A-HDDL  470 (499)
T ss_dssp             TTCSSCEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC--C-----
T ss_pred             cCCCceEEEEEEE-CCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHHHHh--c-cccc
Confidence            2456899999999 7889999999999999999999999999999999999999999999999999887421  2 2567


Q ss_pred             cccC
Q psy3825         326 SCCR  329 (332)
Q Consensus       326 ~~~~  329 (332)
                      +||.
T Consensus       471 ~~~~  474 (499)
T 1xdi_A          471 DCTA  474 (499)
T ss_dssp             ----
T ss_pred             hhhH
Confidence            8986

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=4.9e-38  Score=309.72  Aligned_cols=215  Identities=36%  Similarity=0.624  Sum_probs=183.2

Q ss_pred             eecCCee-EEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825           7 ASMDKVF-EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus         7 v~~~dg~-~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      +.+++|+ ++++|.||+|+|++||++.|.++++|++++ ++|+|.||+ +||++|+|||+|||+ +.+++++.|..||+.
T Consensus       242 v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~-~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A~~~g~~  319 (463)
T 2r9z_A          242 LVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQ-SNGMVPTDAYQNTNVPGVYALGDIT-GRDQLTPVAIAAGRR  319 (463)
T ss_dssp             EEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCC-TTSCCCCCTTSBCSSTTEEECGGGG-TSCCCHHHHHHHHHH
T ss_pred             EEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccC-CCCCEeECCCCccCCCCEEEEeecC-CCcccHHHHHHHHHH
Confidence            4556777 899999999999999998777788899998 789999999 999999999999998 678899999999999


Q ss_pred             HHHHHhCCCCcc-cccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccC
Q psy3825          85 LAARLYGNGTTQ-MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYY  163 (332)
Q Consensus        85 AA~nI~G~~~~~-~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  163 (332)
                      +|.||+|..... .++..+|+++|++|++++||+||++|++++| .++++....+.+..         |+          
T Consensus       320 aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g-~~~~~~~~~~~~~~---------~~----------  379 (463)
T 2r9z_A          320 LAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLG-DVLTVYETSFTPMR---------YA----------  379 (463)
T ss_dssp             HHHHHHSCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHC-SCEEEEEEEECCGG---------GT----------
T ss_pred             HHHHHcCCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcCC-CCEEEEEEEcccch---------hh----------
Confidence            999999865444 7888999999999999999999999998866 45776554332211         00          


Q ss_pred             CCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccccc
Q psy3825         164 KPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFI  243 (332)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (332)
                                                                                             .        
T Consensus       380 -----------------------------------------------------------------------~--------  380 (463)
T 2r9z_A          380 -----------------------------------------------------------------------L--------  380 (463)
T ss_dssp             -----------------------------------------------------------------------T--------
T ss_pred             -----------------------------------------------------------------------h--------
Confidence                                                                                   0        


Q ss_pred             ccCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCC
Q psy3825         244 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPT  323 (332)
Q Consensus       244 ~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~  323 (332)
                       ..+...+|+|++++ +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+..++.+++++.++.
T Consensus       381 -~~~~~~~~~klv~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~  458 (463)
T 2r9z_A          381 -NEHGPKTAMKLVCA-GPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTLKEPVRRPGDPL  458 (463)
T ss_dssp             -SSSCCCEEEEEEEE-TTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGCCCSCSBCCC---
T ss_pred             -hcCCCcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHhhcccCCCcc
Confidence             12457799999999 7899999999999999999999999999999999999999999999999999988888777755


Q ss_pred             C
Q psy3825         324 P  324 (332)
Q Consensus       324 ~  324 (332)
                      .
T Consensus       459 ~  459 (463)
T 2r9z_A          459 P  459 (463)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=1.7e-37  Score=306.40  Aligned_cols=199  Identities=25%  Similarity=0.412  Sum_probs=173.2

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++||.||+
T Consensus       270 g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~-~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~l~~~A~~~g~~aa~~i~  347 (482)
T 1ojt_A          270 KEPQRYDAVLVAAGRAPNGKLISAEKAGVAVT-DRGFIEVDKQMRTNVPHIYAIGDIV-GQPMLAHKAVHEGHVAAENCA  347 (482)
T ss_dssp             SSCEEESCEEECCCEEECGGGTTGGGTTCCCC-TTSCCCCCTTSBCSSTTEEECGGGT-CSSCCHHHHHHHHHHHHHHHT
T ss_pred             ceEEEcCEEEECcCCCcCCCCCChhhcCceeC-CCCCEeeCCCcccCCCCEEEEEccc-CCCccHHHHHHHHHHHHHHHc
Confidence            56789999999999999999887889999998 789999999 999999999999999 678899999999999999999


Q ss_pred             CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      |.. ..+++..+|+++|++|++|+||+||++|++. |. ++.+....+...         .|+                 
T Consensus       348 g~~-~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~-g~-~~~~~~~~~~~~---------~~~-----------------  398 (482)
T 1ojt_A          348 GHK-AYFDARVIPGVAYTSPEVAWVGETELSAKAS-AR-KITKANFPWAAS---------GRA-----------------  398 (482)
T ss_dssp             TCC-CCCCCCCCCEEECSSSCEEEEECCHHHHHHH-TC-CEEEEEEEGGGC---------HHH-----------------
T ss_pred             CCC-ccCCCCCCCEEEEcCCCeEEEeCCHHHHHhc-CC-CEEEEEEEcCcc---------hHH-----------------
Confidence            854 4578888999999999999999999999987 43 466554332211         111                 


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                                      .         ..+...
T Consensus       399 ----------------------------------------------------------------~---------~~~~~~  405 (482)
T 1ojt_A          399 ----------------------------------------------------------------I---------ANGCDK  405 (482)
T ss_dssp             ----------------------------------------------------------------H---------HTTCCS
T ss_pred             ----------------------------------------------------------------h---------hcCCCc
Confidence                                                                            0         124567


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ||+|+++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+..++..
T Consensus       406 ~~~k~~~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~  469 (482)
T 1ojt_A          406 PFTKLIFD-AETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEV  469 (482)
T ss_dssp             CEEEEEEE-TTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHH
T ss_pred             EEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHH
Confidence            99999999 78999999999999999999999999999999999999999999999999998764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=1.3e-37  Score=305.40  Aligned_cols=201  Identities=18%  Similarity=0.303  Sum_probs=166.9

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCch
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELT   75 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la   75 (332)
                      .+.+++++++++|.||+|+|++||+++  ++++|++++ ++|+|.||+ ||||+|||||+|||+..         .++++
T Consensus       218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~--~~~~gl~~~-~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a  294 (437)
T 4eqs_A          218 EITFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLD-RKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLA  294 (437)
T ss_dssp             EEEETTSCEEECSEEEECCCEEESCGG--GTTSSCCCC-TTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSH
T ss_pred             eeeecCCeEEeeeeEEEEeceecCcHH--HHhhhhhhc-cCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhH
Confidence            466778899999999999999999987  678899998 899999999 99999999999999841         24578


Q ss_pred             hHHHHHHHHHHHHHhCCCCc-ccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchh
Q psy3825          76 PVAVQAGKLLAARLYGNGTT-QMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCY  154 (332)
Q Consensus        76 ~vA~~qG~vAA~nI~G~~~~-~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  154 (332)
                      +.|.+||+++|+||+|.+.. ..++..+|+++|++|++|+||+||+||++. |   +++....+         .+     
T Consensus       295 ~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~-~---~~~~~~~~---------~~-----  356 (437)
T 4eqs_A          295 WGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF-D---YKMVEVTQ---------GA-----  356 (437)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGS-C---EEEEEEEE---------ES-----
T ss_pred             HHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHhC-C---ceEEEEec---------CC-----
Confidence            99999999999999997543 346777899999999999999999999875 3   55433211         11     


Q ss_pred             hhhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcc
Q psy3825         155 LKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHA  234 (332)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (332)
                           ++                                                                         
T Consensus       357 -----~~-------------------------------------------------------------------------  358 (437)
T 4eqs_A          357 -----HA-------------------------------------------------------------------------  358 (437)
T ss_dssp             -----SC-------------------------------------------------------------------------
T ss_pred             -----ch-------------------------------------------------------------------------
Confidence                 00                                                                         


Q ss_pred             cCCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHH
Q psy3825         235 YYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRV  312 (332)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~  312 (332)
                      .|+        .+.++||+||++| +++++|||+|++|++ |+|+|+.+++||++|+|++||.++ +.+||+++++++.+
T Consensus       359 ~~~--------~~~~~g~~Kli~d-~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~~d~v  429 (437)
T 4eqs_A          359 NYY--------PGNSPLHLRVYYD-TSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHPKDLI  429 (437)
T ss_dssp             TTS--------SSCCEEEEEEEEE-TTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSCHH
T ss_pred             hhc--------CCCCcEEEEEEEE-CCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCchHHHH
Confidence            011        1467899999999 789999999999985 999999999999999999999998 56699999987655


Q ss_pred             Hh
Q psy3825         313 TI  314 (332)
Q Consensus       313 ~~  314 (332)
                      .+
T Consensus       430 ~~  431 (437)
T 4eqs_A          430 NM  431 (437)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=8.3e-37  Score=303.62  Aligned_cols=211  Identities=35%  Similarity=0.564  Sum_probs=175.0

Q ss_pred             eecCCeeE-EEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC---------------
Q psy3825           7 ASMDKVFE-DTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH---------------   69 (332)
Q Consensus         7 v~~~dg~~-I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~---------------   69 (332)
                      +.+++|++ +++|.||+|+|++||++.|+++++|+++  ++|+|.||+ +||++|+|||+|||+.               
T Consensus       253 v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~--~~G~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~  330 (500)
T 1onf_A          253 IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET--NNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKL  330 (500)
T ss_dssp             EEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB--SSSCEEECTTCBCSSSSEEECSTTEEEC-------------
T ss_pred             EEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc--cCCEEEECCCcccCCCCEEEEeccccccccccccccccccc
Confidence            44556667 9999999999999999877678899988  478999999 9999999999999981               


Q ss_pred             ------------------CCCCchhHHHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCE
Q psy3825          70 ------------------EKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNL  131 (332)
Q Consensus        70 ------------------g~~~la~vA~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~  131 (332)
                                        +.+++++.|.+||++||+||+|.....+++..+|+++|++|++|+||+||++|++.+|.+++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~  410 (500)
T 1onf_A          331 YNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENV  410 (500)
T ss_dssp             -----------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHTCGGGE
T ss_pred             cccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeEEEcCcceEEEeCCHHHHHhcCCCccE
Confidence                              45689999999999999999986555678889999999999999999999999988553457


Q ss_pred             EEEEeecCCccccccCCCccchhhhhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhccc
Q psy3825         132 EIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAY  211 (332)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (332)
                      .+....+.+..         |+                                                          
T Consensus       411 ~~~~~~~~~~~---------~~----------------------------------------------------------  423 (500)
T 1onf_A          411 KIYESKFTNLF---------FS----------------------------------------------------------  423 (500)
T ss_dssp             EEEEEEECCGG---------GT----------------------------------------------------------
T ss_pred             EEEEEECchhh---------hh----------------------------------------------------------
Confidence            76544332211         10                                                          


Q ss_pred             CCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCC
Q psy3825         212 YKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLT  291 (332)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t  291 (332)
                                             .|     .++..+.+.+++||++| +++++|||+|++|++|+|+|+.+++||+.|+|
T Consensus       424 -----------------------~~-----~~~~~~~~~~~~kli~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t  474 (500)
T 1onf_A          424 -----------------------VY-----DIEPELKEKTYLKLVCV-GKDELIKGLHIIGLNADEIVQGFAVALKMNAT  474 (500)
T ss_dssp             -----------------------TS-----CSCGGGSCCEEEEEEEE-TTTTEEEEEEEESTTHHHHHHHHHHHHHTTCB
T ss_pred             -----------------------hc-----cccccCCCceEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCC
Confidence                                   00     00011356799999999 78999999999999999999999999999999


Q ss_pred             HHHHhcccccCCCchHHHHHHHhh
Q psy3825         292 FETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       292 ~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ++||.+++++|||++|++..+..+
T Consensus       475 ~~~l~~~~~~~Pt~~e~~~~~~~~  498 (500)
T 1onf_A          475 KKDFDETIPIHPTAAEEFLTLQPW  498 (500)
T ss_dssp             HHHHHTSCCCTTCSTTHHHHCC--
T ss_pred             HHHHhccccCCCCHHHHHHHhccc
Confidence            999999999999999999876543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=8.6e-37  Score=299.12  Aligned_cols=200  Identities=25%  Similarity=0.351  Sum_probs=172.8

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++||.||+
T Consensus       255 ~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~-~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~aa~~i~  332 (464)
T 2a8x_A          255 AQELKAEKVLQAIGFAPNVEGYGLDKAGVALT-DRKAIGVDDYMRTNVGHIYAIGDVN-GLLQLAHVAEAQGVVAAETIA  332 (464)
T ss_dssp             EEEEEESEEEECSCEEECCSSSCHHHHTCCBC-TTSSBCCCTTSBCSSTTEEECGGGG-CSSCSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEcCEEEECCCCCccCCCCCchhcCCccC-CCCCEeECcCCccCCCCEEEeECcC-CCccCHHHHHHHHHHHHHHhc
Confidence            37899999999999999999877788899998 789999999 999999999999999 678899999999999999999


Q ss_pred             CCCCcc-cccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccc
Q psy3825          91 GNGTTQ-MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFF  169 (332)
Q Consensus        91 G~~~~~-~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  169 (332)
                      |..... +++..+|+++|++|++++||+||++|++. |. ++.+....|...         .|.                
T Consensus       333 g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~~~~~~~---------~~~----------------  385 (464)
T 2a8x_A          333 GAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNE-GY-DVVVAKFPFTAN---------AKA----------------  385 (464)
T ss_dssp             TCCCCCCCCGGGSCEEECSSSEEEEEECCHHHHHHT-TC-CEEEEEEEGGGC---------HHH----------------
T ss_pred             CCCCcccCCCCCCCEEEECCCCeEEEcCCHHHHHhc-CC-CEEEEEEEcchh---------hhh----------------
Confidence            833345 77889999999999999999999999987 53 466554333211         110                


Q ss_pred             cCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCc
Q psy3825         170 IPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQ  249 (332)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (332)
                                                                                       .         ..+.+
T Consensus       386 -----------------------------------------------------------------~---------~~~~~  391 (464)
T 2a8x_A          386 -----------------------------------------------------------------H---------GVGDP  391 (464)
T ss_dssp             -----------------------------------------------------------------H---------HHTCC
T ss_pred             -----------------------------------------------------------------h---------hcCCC
Confidence                                                                             0         01456


Q ss_pred             ceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       250 ~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      .||+|+++| +++++|||+|++|++|.|+|+.+++||++|+|++||.+++++|||++|.+..++..
T Consensus       392 ~~~~k~~~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~  456 (464)
T 2a8x_A          392 SGFVKLVAD-AKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFHG  456 (464)
T ss_dssp             CCEEEEEEE-TTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTHHHHHHHHH
T ss_pred             cEEEEEEEE-CCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHHHHHHHHHH
Confidence            799999999 78999999999999999999999999999999999999999999999999998764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=1.4e-36  Score=298.34  Aligned_cols=201  Identities=29%  Similarity=0.494  Sum_probs=174.9

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      ++++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++||.|
T Consensus       264 ~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~aa~~  341 (474)
T 1zmd_A          264 GKAEVITCDVLLVCIGRRPFTKNLGLEELGIELD-PRGRIPVNTRFQTKIPNIYAIGDVV-AGPMLAHKAEDEGIICVEG  341 (474)
T ss_dssp             CCCEEEEESEEEECSCEEECCTTSSHHHHTCCCC-TTSCCCCCTTCBCSSTTEEECGGGS-SSCCCHHHHHHHHHHHHHH
T ss_pred             CCceEEEcCEEEECcCCCcCCCcCCchhcCCccC-CCCCEEECcCCccCCCCEEEeeecC-CCCccHHHHHHHHHHHHHH
Confidence            5667899999999999999999877788899998 789999999 999999999999999 6788999999999999999


Q ss_pred             HhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccc
Q psy3825          89 LYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEF  168 (332)
Q Consensus        89 I~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  168 (332)
                      |+|.. ..+++..+|+++|++|++++||+||++|++. |. ++++....|...         .|.               
T Consensus       342 i~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~~~~~~~---------~~~---------------  394 (474)
T 1zmd_A          342 MAGGA-VHIDYNCVPSVIYTHPEVAWVGKSEEQLKEE-GI-EYKVGKFPFAAN---------SRA---------------  394 (474)
T ss_dssp             HTTCC-CCCCGGGCCEEECSSSEEEEEECCHHHHHHH-TC-CEEEEEEEGGGC---------HHH---------------
T ss_pred             hcCCC-CcCCCCCCCEEEECCCCeEEEeCCHHHHHhc-CC-CEEEEEEecccc---------hhh---------------
Confidence            99864 4578899999999999999999999999987 53 466654433211         110               


Q ss_pred             ccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCC
Q psy3825         169 FIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNP  248 (332)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (332)
                                                                                        .         ..+.
T Consensus       395 ------------------------------------------------------------------~---------~~~~  399 (474)
T 1zmd_A          395 ------------------------------------------------------------------K---------TNAD  399 (474)
T ss_dssp             ------------------------------------------------------------------H---------HTTC
T ss_pred             ------------------------------------------------------------------h---------hcCC
Confidence                                                                              0         1245


Q ss_pred             cceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         249 QRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       249 ~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ..||+|++++ +++++|||+|++|++|.|+|+.+++||+.|+|++||.+++++|||++|.+..++..
T Consensus       400 ~~~~~k~~~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~  465 (474)
T 1zmd_A          400 TDGMVKILGQ-KSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLA  465 (474)
T ss_dssp             CCCEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHHHHHHHHHH
T ss_pred             CcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHH
Confidence            6799999999 78999999999999999999999999999999999999999999999999998764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=2.3e-36  Score=296.33  Aligned_cols=198  Identities=25%  Similarity=0.425  Sum_probs=172.5

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC-CCCchhHHHHHHHHHHHHHh
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE-KPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g-~~~la~vA~~qG~vAA~nI~   90 (332)
                      +++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ |||++|+|||+|||+ + .+++++.|..||++||.||.
T Consensus       261 ~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~~~A~~~g~~aa~~i~  338 (468)
T 2qae_A          261 ETVTCEALLVSVGRRPFTGGLGLDKINVAKN-ERGFVKIGDHFETSIPDVYAIGDVV-DKGPMLAHKAEDEGVACAEILA  338 (468)
T ss_dssp             EEEEESEEEECSCEEECCTTSCHHHHTCCBC-TTSCBCCCTTSBCSSTTEEECGGGB-SSSCSCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCEEEECCCcccCCCCCCchhcCCccC-CCCCEeECCCcccCCCCEEEeeccC-CCCCccHhHHHHHHHHHHHHHc
Confidence            6899999999999999999877888999998 789999999 999999999999999 6 68899999999999999999


Q ss_pred             CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      |.. ..+++..+|+++|++|++++||+||++|++. |. ++.+....|...         .|.                 
T Consensus       339 ~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~~~~~~~---------~~~-----------------  389 (468)
T 2qae_A          339 GKP-GHVNYGVIPAVIYTMPEVASVGKSEDELKKE-GV-AYKVGKFPFNAN---------SRA-----------------  389 (468)
T ss_dssp             TCC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHT-TC-CEEEEEEEGGGC---------HHH-----------------
T ss_pred             CCC-ccCCCCCCCEEEECCCceEEEeCCHHHHHhc-CC-CEEEEEEecccc---------hhh-----------------
Confidence            854 4578889999999999999999999999987 43 466554333211         110                 


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                                      .         ..+...
T Consensus       390 ----------------------------------------------------------------~---------~~~~~~  396 (468)
T 2qae_A          390 ----------------------------------------------------------------K---------AVSTED  396 (468)
T ss_dssp             ----------------------------------------------------------------H---------HTTCCC
T ss_pred             ----------------------------------------------------------------h---------hcCCCc
Confidence                                                                            0         124567


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ||+|+++| +++++|||+|++|++|.|+|+.+++||+.|+|++||.+++++|||++|.+..++..
T Consensus       397 ~~~kl~~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~  460 (468)
T 2qae_A          397 GFVKVLVD-KATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACMA  460 (468)
T ss_dssp             CEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTHHHHHHHHHH
T ss_pred             EEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHH
Confidence            99999999 78999999999999999999999999999999999999999999999999998764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.1e-36  Score=295.70  Aligned_cols=199  Identities=29%  Similarity=0.480  Sum_probs=172.8

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      +++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++||.||
T Consensus       253 ~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~-~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A~~~g~~aa~~i  330 (455)
T 1ebd_A          253 ETKTIDADYVLVTVGRRPNTDELGLEQIGIKMT-NRGLIEVDQQCRTSVPNIFAIGDIV-PGPALAHKASYEGKVAAEAI  330 (455)
T ss_dssp             EEEEEEESEEEECSCEEESCSSSSTTTTTCCBC-TTSCBCCCTTCBCSSTTEEECGGGS-SSCCCHHHHHHHHHHHHHHH
T ss_pred             ceeEEEcCEEEECcCCCcccCcCChhhcCCccC-CCCCEeeCCCcccCCCCEEEEeccC-CCcccHHHHHHHHHHHHHHH
Confidence            567899999999999999999877788999998 789999999 999999999999999 67889999999999999999


Q ss_pred             hCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccc
Q psy3825          90 YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFF  169 (332)
Q Consensus        90 ~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  169 (332)
                      .|.. ..+++..+|+++|++|++++||+||++|++. |. ++.+....+...         .|.                
T Consensus       331 ~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~~~~~~~---------~~~----------------  382 (455)
T 1ebd_A          331 AGHP-SAVDYVAIPAVVFSDPECASVGYFEQQAKDE-GI-DVIAAKFPFAAN---------GRA----------------  382 (455)
T ss_dssp             TSCC-CCCCCSCCCEEECSSSCEEEEECCHHHHHTT-TC-CEEEEEEEGGGC---------HHH----------------
T ss_pred             cCCC-ccCCCCCCCEEEECCCceEEEeCCHHHHHhc-CC-CEEEEEEEcCcc---------hHH----------------
Confidence            9853 4578889999999999999999999999987 43 466554332211         110                


Q ss_pred             cCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCc
Q psy3825         170 IPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQ  249 (332)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (332)
                                                                                       .         ..+.+
T Consensus       383 -----------------------------------------------------------------~---------~~~~~  388 (455)
T 1ebd_A          383 -----------------------------------------------------------------L---------ALNDT  388 (455)
T ss_dssp             -----------------------------------------------------------------H---------HHTCC
T ss_pred             -----------------------------------------------------------------h---------hcCCC
Confidence                                                                             0         01456


Q ss_pred             ceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHh
Q psy3825         250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI  314 (332)
Q Consensus       250 ~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~  314 (332)
                      .||+|+++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++.
T Consensus       389 ~~~~k~~~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~  452 (455)
T 1ebd_A          389 DGFLKLVVR-KEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAE  452 (455)
T ss_dssp             CCEEEEEEE-TTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHH
T ss_pred             cEEEEEEEE-CCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHH
Confidence            799999999 7899999999999999999999999999999999999999999999999999875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.6e-36  Score=295.20  Aligned_cols=199  Identities=27%  Similarity=0.417  Sum_probs=172.7

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++||.||+
T Consensus       263 ~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~-~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A~~~g~~aa~~i~  340 (470)
T 1dxl_A          263 QTIIEADVVLVSAGRTPFTSGLNLDKIGVETD-KLGRILVNERFSTNVSGVYAIGDVI-PGPMLAHKAEEDGVACVEYLA  340 (470)
T ss_dssp             CEEEEESEEECCCCEEECCTTSCCTTTTCCBC-SSSCBCCCTTCBCSSTTEEECSTTS-SSCCCHHHHHHHHHHHHHHHT
T ss_pred             ceEEECCEEEECCCCCcCCCCCCchhcCCccC-CCCCEeECcCCccCCCCEEEEeccC-CCCccHHHHHHHHHHHHHHHc
Confidence            47899999999999999999887888999998 789999999 999999999999999 678899999999999999999


Q ss_pred             CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      |.. ..+++..+|+++|++|++++||+||++|++. |. ++.+....+...         .|.                 
T Consensus       341 g~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~~~~~~~---------~~~-----------------  391 (470)
T 1dxl_A          341 GKV-GHVDYDKVPGVVYTNPEVASVGKTEEQVKET-GV-EYRVGKFPFMAN---------SRA-----------------  391 (470)
T ss_dssp             TSC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHT-TC-CEEEEEEEGGGC---------HHH-----------------
T ss_pred             CCC-cCCCCCCCCEEEECCCceEEEcCCHHHHHhc-CC-cEEEEEEecccc---------hHH-----------------
Confidence            854 4578889999999999999999999999987 53 466554332211         110                 


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                                      .         ..+.+.
T Consensus       392 ----------------------------------------------------------------~---------~~~~~~  398 (470)
T 1dxl_A          392 ----------------------------------------------------------------K---------AIDNAE  398 (470)
T ss_dssp             ----------------------------------------------------------------H---------HHSCCC
T ss_pred             ----------------------------------------------------------------H---------hcCCCc
Confidence                                                                            0         014567


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ||+|+++| +++++|||+|++|++|.|+|+.+++||+.|+|++||.+++++|||++|.+..++..
T Consensus       399 ~~~k~~~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~  462 (470)
T 1dxl_A          399 GLVKIIAE-KETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMA  462 (470)
T ss_dssp             CEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHH
T ss_pred             EEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHH
Confidence            99999999 78999999999999999999999999999999999999999999999999998764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=1.5e-35  Score=291.72  Aligned_cols=196  Identities=34%  Similarity=0.502  Sum_probs=170.4

Q ss_pred             EEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhCC
Q psy3825          14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGN   92 (332)
Q Consensus        14 ~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G~   92 (332)
                      ++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++||.||+|.
T Consensus       257 ~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~t~~~~Iya~GD~~-~~~~l~~~A~~~g~~aa~~i~g~  334 (464)
T 2eq6_A          257 EVVVDKVLVAVGRKPRTEGLGLEKAGVKVD-ERGFIRVNARMETSVPGVYAIGDAA-RPPLLAHKAMREGLIAAENAAGK  334 (464)
T ss_dssp             EEEESEEEECSCEEESCTTSSHHHHTCCBC-TTSCBCCCTTCBCSSTTEEECGGGT-CSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEEcCEEEECCCcccCCCCCChhhcCceec-CCCCEEECCCcccCCCCEEEEeccC-CCcccHHHHHHHHHHHHHHhcCC
Confidence            899999999999999999877788999998 789999999 999999999999999 67889999999999999999985


Q ss_pred             CCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCC
Q psy3825          93 GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQ  172 (332)
Q Consensus        93 ~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  172 (332)
                      . ..+++. +|+++|++|++++||+||++|++. |. ++.+....+...         .|.                   
T Consensus       335 ~-~~~~~~-~p~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~~~~~~~---------~~~-------------------  382 (464)
T 2eq6_A          335 D-SAFDYQ-VPSVVYTSPEWAGVGLTEEEAKRA-GY-KVKVGKFPLAAS---------GRA-------------------  382 (464)
T ss_dssp             C-CCCCCC-CCEEECSSSEEEEEECCHHHHHHT-TC-CEEEEEEEGGGC---------HHH-------------------
T ss_pred             C-cccCCC-CCeEEECCCCEEEEeCCHHHHHhc-CC-CEEEEEEEcCcc---------hhh-------------------
Confidence            4 456788 999999999999999999999987 43 355544332211         110                   


Q ss_pred             CCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceE
Q psy3825         173 RNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCY  252 (332)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (332)
                                                                                    .         ..+...|+
T Consensus       383 --------------------------------------------------------------~---------~~~~~~g~  391 (464)
T 2eq6_A          383 --------------------------------------------------------------L---------TLGGAEGM  391 (464)
T ss_dssp             --------------------------------------------------------------H---------HTSCCCCE
T ss_pred             --------------------------------------------------------------h---------hcCCCcEE
Confidence                                                                          0         11456799


Q ss_pred             EEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         253 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       253 ~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +|+++| +++++|||+|++|++|+|+|+.+++||+.|+|++||.+++++|||++|.+.+++..
T Consensus       392 ~k~~~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~  453 (464)
T 2eq6_A          392 VKVVGD-EETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAEA  453 (464)
T ss_dssp             EEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHHHHH
T ss_pred             EEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHH
Confidence            999999 78899999999999999999999999999999999999999999999999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=2.6e-35  Score=289.23  Aligned_cols=200  Identities=26%  Similarity=0.432  Sum_probs=171.9

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      +++++++|.||+|+|++||++.|.++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++||.||
T Consensus       270 ~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~-~~G~i~vd~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~aa~~i  347 (478)
T 1v59_A          270 KQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVD-KRGRLVIDDQFNSKFPHIKVVGDVT-FGPMLAHKAEEEGIAAVEML  347 (478)
T ss_dssp             EEEEEEESEEEECSCEEECCTTSCTTTTTCCBC-TTSCBCCCTTSBCSSTTEEECGGGS-SSCCCHHHHHHHHHHHHHHH
T ss_pred             CceEEECCEEEECCCCCcCCCCCCchhcCceeC-CCCCEeECcCCccCCCCEEEeeccC-CCcccHHHHHHHHHHHHHHH
Confidence            567899999999999999999655788999998 789999999 999999999999999 67889999999999999999


Q ss_pred             hCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccc
Q psy3825          90 YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFF  169 (332)
Q Consensus        90 ~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  169 (332)
                      +|.. ..+++..+|+++|++|++++||+||++|++. |. ++.+....+...         .|.                
T Consensus       348 ~~~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~~~~~~~---------~~~----------------  399 (478)
T 1v59_A          348 KTGH-GHVNYNNIPSVMYSHPEVAWVGKTEEQLKEA-GI-DYKIGKFPFAAN---------SRA----------------  399 (478)
T ss_dssp             HHSC-CCCCTTSCCEEECSSSEEEEEECCHHHHHHT-TC-CEEEEEEEGGGC---------HHH----------------
T ss_pred             cCCC-CCCCCCCCCEEEEcCCcEEEEECCHHHHHHc-CC-CEEEEEEecccc---------hhh----------------
Confidence            9854 3478889999999999999999999999986 53 355543322110         110                


Q ss_pred             cCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCc
Q psy3825         170 IPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQ  249 (332)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (332)
                                                                                       .         ..+..
T Consensus       400 -----------------------------------------------------------------~---------~~~~~  405 (478)
T 1v59_A          400 -----------------------------------------------------------------K---------TNQDT  405 (478)
T ss_dssp             -----------------------------------------------------------------H---------HTTCC
T ss_pred             -----------------------------------------------------------------h---------hcCCC
Confidence                                                                             0         01346


Q ss_pred             ceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         250 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       250 ~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      .|++|++++ +++++|||+|++|++|.|+|+.++.||+.|+|++||.+++++|||++|.+..++..
T Consensus       406 ~~~~k~~~~-~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~  470 (478)
T 1v59_A          406 EGFVKILID-SKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMA  470 (478)
T ss_dssp             CCEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHH
T ss_pred             cEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCCHHHHHHHHHHH
Confidence            799999999 78899999999999999999999999999999999999999999999999998764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=1.7e-35  Score=296.16  Aligned_cols=221  Identities=23%  Similarity=0.306  Sum_probs=176.9

Q ss_pred             eecCCee-EEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825           7 ASMDKVF-EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus         7 v~~~dg~-~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      +.+++|+ ++++|.||+|+|++||++. .++++|++++ ++|+|.||+ |||++|+|||+|||+ +.+++++.|..||++
T Consensus       294 v~~~~G~~~i~aD~Vv~A~G~~p~~~~-~l~~~gl~~~-~~G~i~Vd~~~~t~~~~IyA~GD~~-~~~~~~~~A~~~g~~  370 (523)
T 1mo9_A          294 AMTPNGEMRIETDFVFLGLGEQPRSAE-LAKILGLDLG-PKGEVLVNEYLQTSVPNVYAVGDLI-GGPMEMFKARKSGCY  370 (523)
T ss_dssp             EEETTEEEEEECSCEEECCCCEECCHH-HHHHHTCCBC-TTSCBCCCTTSBCSSTTEEECGGGG-CSSCSHHHHHHHHHH
T ss_pred             EEECCCcEEEEcCEEEECcCCccCCcc-CHHHcCCccC-CCCCEEECCCCccCCCCEEEEeecC-CCcccHHHHHHHHHH
Confidence            4556777 8999999999999999983 2678899998 789999999 999999999999999 678899999999999


Q ss_pred             HHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825          85 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK  164 (332)
Q Consensus        85 AA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  164 (332)
                      ||.||+|.. ..+++..+|+++|++|++++||+||++|++. |. ++.+....+...      .+               
T Consensus       371 aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~~~~~~~------~~---------------  426 (523)
T 1mo9_A          371 AARNVMGEK-ISYTPKNYPDFLHTHYEVSFLGMGEEEARAA-GH-EIVTIKMPPDTE------NG---------------  426 (523)
T ss_dssp             HHHHHTTCC-CCCCCCSCCEEEESSSEEEEEECCHHHHHHT-TC-CEEEEEESCCST------TT---------------
T ss_pred             HHHHHcCCC-CCCCCCCCCeEEECCCceEEEeCCHHHHHhC-CC-CEEEEEEecccc------cc---------------
Confidence            999999854 4567888999999999999999999999987 43 366654333210      00               


Q ss_pred             CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825         165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (332)
                                                .+..+|.++                        +.     ..++.++|      
T Consensus       427 --------------------------~~~~~~~~~------------------------~~-----~~~~~~~~------  445 (523)
T 1mo9_A          427 --------------------------LNVALPASD------------------------RT-----MLYAFGKG------  445 (523)
T ss_dssp             --------------------------TCSSCSCCT------------------------TT-----HHHHHSTT------
T ss_pred             --------------------------ccccccccc------------------------cc-----ccceEEee------
Confidence                                      001112211                        00     00112210      


Q ss_pred             cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcc--cccCCCchHHHHHHHhhhc
Q psy3825         245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST--VGIHPTLAEEFTRVTITKR  317 (332)
Q Consensus       245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~--~~~~Pt~~e~~~~~~~~~~  317 (332)
                       .+.+.||+|+++| +++++|||+|++|++|.|+|+.+++||+.|+|++||.++  +++|||++|.+.++....+
T Consensus       446 -~~~~~~~~k~~~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~~Pt~~e~~~~~~~~~~  518 (523)
T 1mo9_A          446 -TAHMSGFQKIVID-AKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRAGSK  518 (523)
T ss_dssp             -TGGGGCEEEEEEE-TTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHHTTCS
T ss_pred             -cCCCCEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHhCCcceECCCHHHHHHHHHHhhH
Confidence             0356899999999 789999999999999999999999999999999999999  9999999999999887543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=9.4e-35  Score=284.88  Aligned_cols=210  Identities=28%  Similarity=0.389  Sum_probs=177.0

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      +.++++|.||+|+|++||++.|.++++|++++ ++|+|.||+ +||+.|+|||+|||+ +.+++++.|..||+++|.||+
T Consensus       255 ~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~-~~G~i~vd~~~~t~~~~iya~GD~~-~~~~~~~~A~~~g~~aa~~i~  332 (467)
T 1zk7_A          255 HGELRADKLLVATGRTPNTRSLALDAAGVTVN-AQGAIVIDQGMRTSNPNIYAAGDCT-DQPQFVYVAAAAGTRAAINMT  332 (467)
T ss_dssp             TEEEEESEEEECSCEEESCTTSCGGGGTCCBC-TTSCBCCCTTCBCSSTTEEECSTTB-SSCCCHHHHHHHHHHHHHHHT
T ss_pred             CcEEEcCEEEECCCCCcCCCcCCchhcCCcCC-CCCCEEECCCcccCCCCEEEEeccC-CCcccHHHHHHHHHHHHHHHc
Confidence            35799999999999999999877788999998 789999999 999999999999999 678899999999999999999


Q ss_pred             CCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCccccc
Q psy3825          91 GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFI  170 (332)
Q Consensus        91 G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  170 (332)
                      +.. ...++..+|+++|++|++++||+||++|++. |. ++.+....+..         ..|.                 
T Consensus       333 ~~~-~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~-g~-~~~~~~~~~~~---------~~~~-----------------  383 (467)
T 1zk7_A          333 GGD-AALDLTAMPAVVFTDPQVATVGYSEAEAHHD-GI-ETDSRTLTLDN---------VPRA-----------------  383 (467)
T ss_dssp             TCC-CCCCCTTCEEEECSSSEEEEEECCHHHHHHT-TC-CEEEEEEEGGG---------CHHH-----------------
T ss_pred             CCC-cccCCCCCCEEEecCCceEEEecCHHHHHhc-CC-CeEEEEEeccc---------chhh-----------------
Confidence            863 4567888999999999999999999999987 53 35554332211         0110                 


Q ss_pred             CCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcc
Q psy3825         171 PQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQR  250 (332)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (332)
                                                                                      +         ..+...
T Consensus       384 ----------------------------------------------------------------~---------~~~~~~  390 (467)
T 1zk7_A          384 ----------------------------------------------------------------L---------ANFDTR  390 (467)
T ss_dssp             ----------------------------------------------------------------H---------HTTCCC
T ss_pred             ----------------------------------------------------------------h---------hcCCCc
Confidence                                                                            0         124567


Q ss_pred             eEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCC-CcccC
Q psy3825         251 CYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTP-QSCCR  329 (332)
Q Consensus       251 ~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~-~~~~~  329 (332)
                      ||+|++++ +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++...  . .+.+ ++||.
T Consensus       391 ~~~kl~~~-~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~--~-~~~~~~~~~~  466 (467)
T 1zk7_A          391 GFIKLVIE-EGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTF--N-KDVKQLSCCA  466 (467)
T ss_dssp             CEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHHHHHHHTT--T-SCGGGTTTSC
T ss_pred             EEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHH--h-hhhhhhhhhc
Confidence            99999999 789999999999999999999999999999999999999999999999999998742  2 3344 67774

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.1e-35  Score=286.97  Aligned_cols=200  Identities=25%  Similarity=0.335  Sum_probs=166.5

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC------CC---CCchhHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH------EK---PELTPVAV   79 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~------g~---~~la~vA~   79 (332)
                      .+++++++|.||+|+|++||+++  ++++|++++ ++|+|.||+ +||++|+|||+|||+.      |.   +++++.|.
T Consensus       226 ~~g~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~-~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~  302 (449)
T 3kd9_A          226 TDAGEYKAELVILATGIKPNIEL--AKQLGVRIG-ETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGN  302 (449)
T ss_dssp             ETTEEEECSEEEECSCEEECCHH--HHHTTCCBC-TTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHH
T ss_pred             eCCCEEECCEEEEeeCCccCHHH--HHhCCccCC-CCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHH
Confidence            34578999999999999999987  678899998 789999999 9999999999999984      22   57899999


Q ss_pred             HHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhc
Q psy3825          80 QAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIY  159 (332)
Q Consensus        80 ~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  159 (332)
                      .||+++|.||+|.......+..+|+++|++|++++||+||+||++. |. ++.+..  +.       ..+  |       
T Consensus       303 ~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-g~-~~~~~~--~~-------~~~--~-------  362 (449)
T 3kd9_A          303 KMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKE-GY-DVRTAF--IK-------AST--R-------  362 (449)
T ss_dssp             HHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHT-TC-CEEEEE--EE-------EES--S-------
T ss_pred             HHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHHHHC-CC-ceEEEE--Ee-------cCC--c-------
Confidence            9999999999987654334556789999999999999999999987 43 233321  21       000  0       


Q ss_pred             cccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCc
Q psy3825         160 HAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPT  239 (332)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (332)
                                                                                                +.++| 
T Consensus       363 --------------------------------------------------------------------------~~~~~-  367 (449)
T 3kd9_A          363 --------------------------------------------------------------------------PHYYP-  367 (449)
T ss_dssp             --------------------------------------------------------------------------CTTST-
T ss_pred             --------------------------------------------------------------------------cccCC-
Confidence                                                                                      00111 


Q ss_pred             ccccccCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHHhh
Q psy3825         240 EFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       240 ~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~~~  315 (332)
                             +.+.||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.++ +++||++++.++.+.+.
T Consensus       368 -------~~~~~~~kli~~-~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~~~~~~~  436 (449)
T 3kd9_A          368 -------GGREIWLKGVVD-NETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPVWDPLIVL  436 (449)
T ss_dssp             -------TCCEEEEEEEEE-TTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCSSCHHHHH
T ss_pred             -------CCceEEEEEEEE-CCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCchhHHHHH
Confidence                   457899999999 789999999999999999999999999999999999998 88999999998887664

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.8e-34  Score=279.90  Aligned_cols=197  Identities=25%  Similarity=0.399  Sum_probs=170.0

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.||+|+|++||+++|+++++|++++ ++ +|.||+ |||+.|+|||+|||+ +.+++++.|..||+.||.||.|
T Consensus       253 ~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~-~~-~i~vd~~~~t~~~~Iya~GD~~-~~~~~~~~A~~~g~~aa~~i~g  329 (458)
T 1lvl_A          253 LRLEADRVLVAVGRRPRTKGFNLECLDLKMN-GA-AIAIDERCQTSMHNVWAIGDVA-GEPMLAHRAMAQGEMVAEIIAG  329 (458)
T ss_dssp             CEECCSCEEECCCEEECCSSSSGGGSCCCEE-TT-EECCCTTCBCSSTTEEECGGGG-CSSCCHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCEEEECcCCCcCCCCCCcHhcCCccc-CC-EEeECCCCcCCCCCEEEeeccC-CCcccHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999877788999998 66 899999 999999999999999 6788999999999999999998


Q ss_pred             CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccC
Q psy3825          92 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIP  171 (332)
Q Consensus        92 ~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  171 (332)
                      .. ..+++..+|+++|++|++++||++|++|++. |. ++.+....+..         ..|.                  
T Consensus       330 ~~-~~~~~~~~p~~~~~~p~~a~vG~~e~~a~~~-g~-~~~~~~~~~~~---------~~~~------------------  379 (458)
T 1lvl_A          330 KA-RRFEPAAIAAVCFTDPEVVVVGKTPEQASQQ-GL-DCIVAQFPFAA---------NGRA------------------  379 (458)
T ss_dssp             CC-CCCCCSCCCEEECSSSEEEEEECCHHHHHHT-TC-CEEEEEEEGGG---------CHHH------------------
T ss_pred             CC-ccCCCCCCCEEEECCCCeEEEeCCHHHHHHc-CC-CEEEEEEECcc---------chhh------------------
Confidence            54 4577888999999999999999999999987 53 35554332211         0010                  


Q ss_pred             CCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcce
Q psy3825         172 QRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRC  251 (332)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (332)
                                                                                     .         ..+...|
T Consensus       380 ---------------------------------------------------------------~---------~~~~~~g  387 (458)
T 1lvl_A          380 ---------------------------------------------------------------M---------SLESKSG  387 (458)
T ss_dssp             ---------------------------------------------------------------H---------HTTCCCC
T ss_pred             ---------------------------------------------------------------h---------hcCCCcE
Confidence                                                                           0         1145679


Q ss_pred             EEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         252 YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       252 ~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      ++|+++| +++++|||+|++|++|.|+|+.+++||+.|+|++||.+++++|||++|.+..++..
T Consensus       388 ~~kl~~d-~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~  450 (458)
T 1lvl_A          388 FVRVVAR-RDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALR  450 (458)
T ss_dssp             EEEEEEE-TTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHH
T ss_pred             EEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHH
Confidence            9999999 78999999999999999999999999999999999999999999999999998764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=1.3e-33  Score=275.84  Aligned_cols=203  Identities=28%  Similarity=0.429  Sum_probs=173.8

Q ss_pred             ecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825           8 SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLA   86 (332)
Q Consensus         8 ~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA   86 (332)
                      .+++++++++|.||+|+|++||+++|+++++|++++ ++|+|.||+ +||+.|+|||+|||+ +.+++++.|..||+.+|
T Consensus       244 ~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~-~~g~i~vd~~~~t~~~~iya~GD~~-~~~~~~~~A~~~g~~aa  321 (455)
T 2yqu_A          244 ELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTD-ERGRIPVDEHLRTRVPHIYAIGDVV-RGPMLAHKASEEGIAAV  321 (455)
T ss_dssp             EETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCC-TTSCCCCCTTSBCSSTTEEECGGGS-SSCCCHHHHHHHHHHHH
T ss_pred             EECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccC-CCCcEeECCCcccCCCCEEEEecCC-CCccCHHHHHHhHHHHH
Confidence            344677899999999999999999877788899997 789999999 999999999999999 67889999999999999


Q ss_pred             HHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCc
Q psy3825          87 ARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPT  166 (332)
Q Consensus        87 ~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  166 (332)
                      .||.|.. ..+++..+|+++|++|++++||++|++|++. |. ++.+....+..         ..|.             
T Consensus       322 ~~i~~~~-~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~-g~-~~~~~~~~~~~---------~~~~-------------  376 (455)
T 2yqu_A          322 EHMVRGF-GHVDYQAIPSVVYTHPEIAAVGYTEEELKAQ-GI-PYKVGKFPYSA---------SGRA-------------  376 (455)
T ss_dssp             HHHHHSC-CCCCGGGCCEEECSSSEEEEEECCHHHHHHH-TC-CEEEEEEEGGG---------CHHH-------------
T ss_pred             HHHcCCC-ccCCCCCCCEEEEcCCceEEEECCHHHHHHc-CC-CEEEEEEEccc---------chHH-------------
Confidence            9999853 4577888999999999999999999999987 53 35554332211         0110             


Q ss_pred             ccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccC
Q psy3825         167 EFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQR  246 (332)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (332)
                                                                                          .         ..
T Consensus       377 --------------------------------------------------------------------~---------~~  379 (455)
T 2yqu_A          377 --------------------------------------------------------------------R---------AM  379 (455)
T ss_dssp             --------------------------------------------------------------------H---------HH
T ss_pred             --------------------------------------------------------------------H---------hc
Confidence                                                                                0         01


Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +.+.+++|+++| +++++|||+|++|++|.|+|+.+++||++|+|+++|.+++++|||++|.+..++..
T Consensus       380 ~~~~~~~k~~~~-~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~~~  447 (455)
T 2yqu_A          380 GETEGFIKVLAH-AKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAALA  447 (455)
T ss_dssp             TCCCCEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHHHH
T ss_pred             CCCcEEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHH
Confidence            356799999999 78899999999999999999999999999999999999999999999999998764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=4e-34  Score=280.79  Aligned_cols=203  Identities=21%  Similarity=0.235  Sum_probs=154.6

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC------CC---CCchh
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH------EK---PELTP   76 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~------g~---~~la~   76 (332)
                      +.+++++++++|.||+|+|++||+++  ++++|++++ ++|+|.||+ +||++|+|||+|||+.      +.   +++++
T Consensus       237 v~~~~g~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~  313 (472)
T 3iwa_A          237 RVITDKRTLDADLVILAAGVSPNTQL--ARDAGLELD-PRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGS  313 (472)
T ss_dssp             EEEESSCEEECSEEEECSCEEECCHH--HHHHTCCBC-TTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTT
T ss_pred             EEEeCCCEEEcCEEEECCCCCcCHHH--HHhCCccCC-CCCCEEECCCcccCCCCEEEeccceecccccCCceeecchHH
Confidence            44556778999999999999999986  567899998 789999999 9999999999999983      22   45889


Q ss_pred             HHHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhh
Q psy3825          77 VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLK  156 (332)
Q Consensus        77 vA~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  156 (332)
                      .|..||++||+||+|...........+++.|++|++++||+||+||++. |. ++.+..  +.       ..+  |    
T Consensus       314 ~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~-g~-~~~~~~--~~-------~~~--~----  376 (472)
T 3iwa_A          314 MANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALRE-GY-DAVNVH--VE-------QFD--R----  376 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEECCHHHHHHT-TC-CEEEEE--EE-------C---------
T ss_pred             HHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEECCHHHHHHc-CC-ceEEEE--Ee-------cCC--c----
Confidence            9999999999999986543222333456678999999999999999987 53 344322  11       011  1    


Q ss_pred             hhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccC
Q psy3825         157 FIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYY  236 (332)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (332)
                                                                                                   +.+
T Consensus       377 -----------------------------------------------------------------------------~~~  379 (472)
T 3iwa_A          377 -----------------------------------------------------------------------------AHF  379 (472)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------------------------------------------------cCc
Confidence                                                                                         011


Q ss_pred             CCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCc---cHHHHHHHHHHHHHCCCCHHHHhcccccC-CCchHHHHHH
Q psy3825         237 KPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP---NAGEVIQGYAAAVKCGLTFETLESTVGIH-PTLAEEFTRV  312 (332)
Q Consensus       237 ~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~---~a~e~i~~~~~ai~~~~t~~~l~~~~~~~-Pt~~e~~~~~  312 (332)
                      +|        +.++||+||++| +++++|||+|++|+   .|+|+|+.+++||++|+|++||.+++++| ||++|.++.+
T Consensus       380 ~~--------~~~~~~~kli~~-~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~  450 (472)
T 3iwa_A          380 YP--------EKTIMTLQLVVD-RPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFASAMDIV  450 (472)
T ss_dssp             -------------CEEEEEEEE-TTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--------CCHH
T ss_pred             cC--------CCceEEEEEEEE-CCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCcccHH
Confidence            11        457899999999 78999999999999   46999999999999999999999999887 9999999887


Q ss_pred             Hhh
Q psy3825         313 TIT  315 (332)
Q Consensus       313 ~~~  315 (332)
                      .+.
T Consensus       451 ~~~  453 (472)
T 3iwa_A          451 NVA  453 (472)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=3.7e-34  Score=280.01  Aligned_cols=198  Identities=20%  Similarity=0.231  Sum_probs=160.3

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCC---------CCchh
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEK---------PELTP   76 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~---------~~la~   76 (332)
                      +.++++ ++++|.||+|+|++||++++  +.. ++++ ++|+|.||+ |||++|+|||+|||+...         .++++
T Consensus       224 v~~~~g-~i~aD~Vv~A~G~~p~~~~l--~~~-~~~~-~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~  298 (452)
T 3oc4_A          224 LETSEQ-EISCDSGIFALNLHPQLAYL--DKK-IQRN-LDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVN  298 (452)
T ss_dssp             EEESSC-EEEESEEEECSCCBCCCSSC--CTT-SCBC-TTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHH
T ss_pred             EEECCC-EEEeCEEEECcCCCCChHHH--Hhh-hccC-CCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHH
Confidence            344455 89999999999999999974  443 8888 789999999 999999999999998421         36899


Q ss_pred             HHHHHHHHHHHHHhCCCCcc-cccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhh
Q psy3825          77 VAVQAGKLLAARLYGNGTTQ-MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYL  155 (332)
Q Consensus        77 vA~~qG~vAA~nI~G~~~~~-~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  155 (332)
                      .|..||++||.||+|..... ..+..+|+.+|+ +++++||+||+||++. |. ++++....+         ..  |   
T Consensus       299 ~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~-~~~a~vG~te~~a~~~-g~-~~~~~~~~~---------~~--~---  361 (452)
T 3oc4_A          299 NAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGD-YYLASTGLTETEGLFF-PQ-TLASIIVRQ---------PA--P---  361 (452)
T ss_dssp             HHHHHHHHHTTSSSSCCCCCCCCCCCEEEEETT-EEEEEEECCSGGGGGS-SS-CEEEEEEEE---------EC--T---
T ss_pred             HHHHHHHHHHHHhcCCCccCCCccccEEEEEcC-eeEEEecCCHHHHHHC-CC-ceEEEEEec---------CC--c---
Confidence            99999999999999865332 256678888885 7999999999999876 53 344432111         00  0   


Q ss_pred             hhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhccc
Q psy3825         156 KFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAY  235 (332)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (332)
                                                                                                    + 
T Consensus       362 ------------------------------------------------------------------------------~-  362 (452)
T 3oc4_A          362 ------------------------------------------------------------------------------P-  362 (452)
T ss_dssp             ------------------------------------------------------------------------------T-
T ss_pred             ------------------------------------------------------------------------------c-
Confidence                                                                                          0 


Q ss_pred             CCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCc-cHHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHH
Q psy3825         236 YKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVT  313 (332)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~-~a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~  313 (332)
                               ..+.+.||+||++| +++++|||+|++|+ +|+|+|+.+++||++|+|++||.++ +++|||++|.++.+.
T Consensus       363 ---------~~~~~~~~~kli~~-~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~  432 (452)
T 3oc4_A          363 ---------LQHGTEILGKLIYD-KVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNIYDITN  432 (452)
T ss_dssp             ---------TTCSCEEEEEEEEE-TTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCSSCHHH
T ss_pred             ---------CCCCCeEEEEEEEE-CCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCchhHHH
Confidence                     01357899999999 78999999999999 7999999999999999999999998 899999999777665


Q ss_pred             hh
Q psy3825         314 IT  315 (332)
Q Consensus       314 ~~  315 (332)
                      +.
T Consensus       433 ~a  434 (452)
T 3oc4_A          433 LM  434 (452)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=1.2e-32  Score=277.57  Aligned_cols=201  Identities=21%  Similarity=0.266  Sum_probs=160.1

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC------CC---CCch
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH------EK---PELT   75 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~------g~---~~la   75 (332)
                      ++.+.+++++++|.||+|+|++||+++  ++++|++++ ++|+|.||+ +||++|+|||+|||+.      +.   ++++
T Consensus       260 ~v~~~~g~~i~~D~Vi~a~G~~p~~~~--l~~~g~~~~-~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~  336 (588)
T 3ics_A          260 VVRLKSGSVIQTDMLILAIGVQPESSL--AKGAGLALG-VRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLA  336 (588)
T ss_dssp             EEEETTSCEEECSEEEECSCEEECCHH--HHHTTCCBC-GGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCH
T ss_pred             EEEECCCCEEEcCEEEEccCCCCChHH--HHhcCceEc-CCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccH
Confidence            456677889999999999999999987  678899998 789999999 9999999999999984      22   4689


Q ss_pred             hHHHHHHHHHHHHHhC-CCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchh
Q psy3825          76 PVAVQAGKLLAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCY  154 (332)
Q Consensus        76 ~vA~~qG~vAA~nI~G-~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  154 (332)
                      +.|..||++||+||+| ...........+...|++|++|+||+||+||++. |. ++.+..  +.+       .+  |  
T Consensus       337 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~-g~-~~~~~~--~~~-------~~--~--  401 (588)
T 3ics_A          337 WPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRL-NI-PYEVVH--VQA-------NS--H--  401 (588)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEEEECCHHHHHHT-TC-CCEEEE--EEE-------ES--S--
T ss_pred             HHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeEEEEecCCHHHHHHc-CC-CeEEEE--Eec-------CC--c--
Confidence            9999999999999998 4432212222345568999999999999999997 53 244322  110       00  0  


Q ss_pred             hhhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcc
Q psy3825         155 LKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHA  234 (332)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (332)
                            +                                                                         
T Consensus       402 ------~-------------------------------------------------------------------------  402 (588)
T 3ics_A          402 ------A-------------------------------------------------------------------------  402 (588)
T ss_dssp             ------C-------------------------------------------------------------------------
T ss_pred             ------c-------------------------------------------------------------------------
Confidence                  0                                                                         


Q ss_pred             cCCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcccccC-CCchHHHHHH
Q psy3825         235 YYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLESTVGIH-PTLAEEFTRV  312 (332)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~~~~~-Pt~~e~~~~~  312 (332)
                      .+        ..+.++||+||++| +++++|||+|++|++ |+|+|+.+++||++|+|++||.++++.| |++++....+
T Consensus       403 ~~--------~~~~~~~~~k~i~~-~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~d~i  473 (588)
T 3ics_A          403 GY--------YPNATPVLIKLIFN-KDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLELSYAPPYSSAKDPV  473 (588)
T ss_dssp             TT--------STTCCEEEEEEEEC-TTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCCCCCSTTTCCSSCHH
T ss_pred             cc--------CCCCceEEEEEEEE-CCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhhhccCCCcccccchh
Confidence            00        12457899999999 789999999999985 8999999999999999999999998877 9987755543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=1.1e-32  Score=274.85  Aligned_cols=201  Identities=22%  Similarity=0.322  Sum_probs=160.1

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC------CC---CCchh
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH------EK---PELTP   76 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~------g~---~~la~   76 (332)
                      +..++++++++|.||+|+|++||+++  ++++|++++ ++|+|.||+ +||++|+|||+|||+.      +.   +++++
T Consensus       246 v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~~g~~~~-~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~  322 (565)
T 3ntd_A          246 LTLSNGELLETDLLIMAIGVRPETQL--ARDAGLAIG-ELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAG  322 (565)
T ss_dssp             EEETTSCEEEESEEEECSCEEECCHH--HHHHTCCBC-TTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHH
T ss_pred             EEEcCCCEEEcCEEEECcCCccchHH--HHhCCcccC-CCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHH
Confidence            34466778999999999999999986  577899998 789999999 9999999999999983      22   35789


Q ss_pred             HHHHHHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhh
Q psy3825          77 VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLK  156 (332)
Q Consensus        77 vA~~qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  156 (332)
                      .|..||++||+||+|...........+++.|++|++++||+||+||++. |.+ +++..  +.       ..+  |    
T Consensus       323 ~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~-g~~-~~~~~--~~-------~~~--~----  385 (565)
T 3ntd_A          323 PANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGATGKNEKQLKQA-GIA-FEKVY--VH-------TAS--H----  385 (565)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHT-TCC-CEEEE--EE-------EES--S----
T ss_pred             HHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHHHHc-CCC-eEEEE--Ee-------cCc--c----
Confidence            9999999999999986544223334456779999999999999999987 533 33221  11       000  0    


Q ss_pred             hhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccC
Q psy3825         157 FIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYY  236 (332)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (332)
                                                                                                   +.|
T Consensus       386 -----------------------------------------------------------------------------~~~  388 (565)
T 3ntd_A          386 -----------------------------------------------------------------------------ASY  388 (565)
T ss_dssp             -----------------------------------------------------------------------------CTT
T ss_pred             -----------------------------------------------------------------------------cCc
Confidence                                                                                         011


Q ss_pred             CCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCccH-HHHHHHHHHHHHCCCCHHHHhccc-ccCCCchHHHHHHH
Q psy3825         237 KPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNA-GEVIQGYAAAVKCGLTFETLESTV-GIHPTLAEEFTRVT  313 (332)
Q Consensus       237 ~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a-~e~i~~~~~ai~~~~t~~~l~~~~-~~~Pt~~e~~~~~~  313 (332)
                      +|        +.+.||+||++| +++++|||+|++|++| +|+|+.+++||++|+|++||.++. .+||++++.+..+.
T Consensus       389 ~~--------~~~~~~~k~v~~-~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~~l~~~~~~~~P~~~~~~~~i~  458 (565)
T 3ntd_A          389 YP--------GAEVVSFKLLFD-PVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQHLELSYAPPYGSAKDVIN  458 (565)
T ss_dssp             ST--------TCCEEEEEEEEC-TTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHHHHTTCCCCCCTTTCCSSCHHH
T ss_pred             CC--------CCceEEEEEEEE-CCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCcccCchhhhhh
Confidence            12        456899999999 7899999999999998 999999999999999999999985 56799986655443

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=2.3e-32  Score=266.97  Aligned_cols=198  Identities=18%  Similarity=0.230  Sum_probs=161.7

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCchhHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELTPVAVQ   80 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la~vA~~   80 (332)
                      +++++++|.||+|+|++||+++  ++++ ++++ ++|+|.||+ |||++|+|||+|||+..         .+++++.|..
T Consensus       230 ~g~~i~~D~vv~a~G~~p~~~l--l~~~-l~~~-~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~  305 (452)
T 2cdu_A          230 DGKEIKSDIAILCIGFRPNTEL--LKGK-VAML-DNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVR  305 (452)
T ss_dssp             TSCEEEESEEEECCCEEECCGG--GTTT-SCBC-TTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHH
T ss_pred             CCCEEECCEEEECcCCCCCHHH--HHHh-hhcC-CCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHH
Confidence            5678999999999999999986  5666 8887 789999999 99999999999999841         1478999999


Q ss_pred             HHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhcc
Q psy3825          81 AGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYH  160 (332)
Q Consensus        81 qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  160 (332)
                      ||++||+||+|......++...+++.+++|++++||+||++|++. |. ++.+..  |+..     .+.           
T Consensus       306 ~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~-g~-~~~~~~--~~~~-----~~~-----------  365 (452)
T 2cdu_A          306 QGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKAN-NL-KVSEVI--IADN-----YRP-----------  365 (452)
T ss_dssp             HHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHT-TC-CCEEEE--EEEE-----SSC-----------
T ss_pred             HHHHHHHHhCCCCCcCCCccceEEEEECCeeeEeecCCHHHHHHc-CC-ceEEEE--EecC-----Ccc-----------
Confidence            999999999986533344556788889999999999999999986 43 233321  1100     000           


Q ss_pred             ccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcc
Q psy3825         161 AYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTE  240 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (332)
                                                                                                .++|  
T Consensus       366 --------------------------------------------------------------------------~~~~--  369 (452)
T 2cdu_A          366 --------------------------------------------------------------------------EFML--  369 (452)
T ss_dssp             --------------------------------------------------------------------------TTBS--
T ss_pred             --------------------------------------------------------------------------ccCC--
Confidence                                                                                      0111  


Q ss_pred             cccccCCCcceEEEEEEecCCCCcEEEEEEeCc-cHHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHHhh
Q psy3825         241 FFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       241 ~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~-~a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~~~  315 (332)
                            +...+++|++++ +++++|||+|++|+ +|+|+|+.++.||++|+|+++|..+ +++|||++|.+..+.+.
T Consensus       370 ------~~~~~~~k~~~~-~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~~a  439 (452)
T 2cdu_A          370 ------STDEVLMSLVYD-PKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFNYLNIL  439 (452)
T ss_dssp             ------CCCEEEEEEEEC-TTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSCHHHHH
T ss_pred             ------CCceEEEEEEEE-CCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHHHHHHH
Confidence                  346799999999 78899999999999 8999999999999999999999986 99999999998877654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.98  E-value=1.1e-31  Score=265.19  Aligned_cols=198  Identities=20%  Similarity=0.288  Sum_probs=163.5

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC------CC---CCchhHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH------EK---PELTPVAVQA   81 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~------g~---~~la~vA~~q   81 (332)
                      +.++++|.||+|+|++||+++  ++++|++++ ++|+|.||+ +||++|+|||+|||+.      +.   +++++.|..|
T Consensus       266 ~~~i~~D~vi~a~G~~p~~~~--l~~~g~~~~-~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~q  342 (480)
T 3cgb_A          266 KGTYKADLVLVSVGVKPNTDF--LEGTNIRTN-HKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQ  342 (480)
T ss_dssp             TEEEECSEEEECSCEEESCGG--GTTSCCCBC-TTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHH
T ss_pred             CCEEEcCEEEECcCCCcChHH--HHhCCcccC-CCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHH
Confidence            357999999999999999987  678899998 789999999 9999999999999984      11   2679999999


Q ss_pred             HHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccc
Q psy3825          82 GKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA  161 (332)
Q Consensus        82 G~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  161 (332)
                      |++||.||+|......++..+|+++|++|++++||+||++|++. |. ++.+.....       ..+.            
T Consensus       343 g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~-g~-~~~~~~~~~-------~~~~------------  401 (480)
T 3cgb_A          343 GRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGL-HI-PYKTVKVDS-------TNMA------------  401 (480)
T ss_dssp             HHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHT-TC-CEEEEEEEE-------ESSC------------
T ss_pred             HHHHHHHhcCCCccCCCccceeEEEECCcEEEEeCCCHHHHHHc-CC-ceEEEEEec-------CCcc------------
Confidence            99999999986543335667899999999999999999999986 43 244322100       0000            


Q ss_pred             cCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCccc
Q psy3825         162 YYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEF  241 (332)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (332)
                                                                                               .++|   
T Consensus       402 -------------------------------------------------------------------------~~~~---  405 (480)
T 3cgb_A          402 -------------------------------------------------------------------------GYYP---  405 (480)
T ss_dssp             -------------------------------------------------------------------------TTST---
T ss_pred             -------------------------------------------------------------------------cccC---
Confidence                                                                                     0111   


Q ss_pred             ccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHHhh
Q psy3825         242 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       242 ~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~~~  315 (332)
                           +.+.||+|++++ +++++|||+|++|++ |+|+|+.+++||+.|+|+++|.++ +++|||++|.+..+.+.
T Consensus       406 -----~~~~~~~kl~~~-~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~~a  475 (480)
T 3cgb_A          406 -----NAKPLYLKLLYR-SDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVWDPIQQA  475 (480)
T ss_dssp             -----TCCEEEEEEEEE-TTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSCHHHHH
T ss_pred             -----CCceEEEEEEEE-CCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCchhHHHHH
Confidence                 356799999999 788999999999998 999999999999999999999996 78999999998887664

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.97  E-value=8.8e-32  Score=262.45  Aligned_cols=198  Identities=20%  Similarity=0.304  Sum_probs=161.9

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC------C---CCCchhHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH------E---KPELTPVAVQ   80 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~------g---~~~la~vA~~   80 (332)
                      +++++++|.||+|+|++||+++  +++. ++++ ++|+|.||+ |||+.|+|||+|||+.      +   .+++++.|..
T Consensus       229 ~~~~i~~d~vi~a~G~~p~~~~--~~~~-~~~~-~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~  304 (447)
T 1nhp_A          229 DKNAYDADLVVVAVGVRPNTAW--LKGT-LELH-PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK  304 (447)
T ss_dssp             SSCEEECSEEEECSCEEESCGG--GTTT-SCBC-TTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHH
T ss_pred             CCCEEECCEEEECcCCCCChHH--HHhh-hhhc-CCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHH
Confidence            3467999999999999999987  5666 8887 789999999 9999999999999984      1   2468999999


Q ss_pred             HHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhcc
Q psy3825          81 AGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYH  160 (332)
Q Consensus        81 qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  160 (332)
                      ||++||.||+|......++..+|++.|++|++++||+++++|++. |.+ +.+..  +..     ..+            
T Consensus       305 qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~-g~~-~~~~~--~~~-----~~~------------  363 (447)
T 1nhp_A          305 QGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKL-GKE-TKAVT--VVE-----DYL------------  363 (447)
T ss_dssp             HHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHH-TCC-CEEEE--EEE-----ESS------------
T ss_pred             HHHHHHHhhcCCCCCCCCccccEEEEECCeeeEEecCCHHHHHHc-CCc-eEEEE--EEc-----CCc------------
Confidence            999999999985433344567899999999999999999999987 532 33221  110     000            


Q ss_pred             ccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcc
Q psy3825         161 AYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTE  240 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (332)
                                                                                               +.++|  
T Consensus       364 -------------------------------------------------------------------------~~~~~--  368 (447)
T 1nhp_A          364 -------------------------------------------------------------------------MDFNP--  368 (447)
T ss_dssp             -------------------------------------------------------------------------CTTCT--
T ss_pred             -------------------------------------------------------------------------cccCC--
Confidence                                                                                     00111  


Q ss_pred             cccccCCCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHHhh
Q psy3825         241 FFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       241 ~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~~~  315 (332)
                            +...||+|++++ +++++|||+|++|++ |.|+|+.+++||+.|+|+++|.++ +++|||++|.+..+.+.
T Consensus       369 ------~~~~~~~k~~~~-~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~~a  438 (447)
T 1nhp_A          369 ------DKQKAWFKLVYD-PETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTA  438 (447)
T ss_dssp             ------TCCEEEEEEEEC-TTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHHHH
T ss_pred             ------CCceEEEEEEEE-CCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcccHHHHH
Confidence                  346799999999 788999999999998 999999999999999999999997 89999999998887654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.97  E-value=2e-31  Score=264.03  Aligned_cols=200  Identities=23%  Similarity=0.328  Sum_probs=161.6

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCchhHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELTPVAVQ   80 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la~vA~~   80 (332)
                      +++++++|.||+|+|++||+++  +++. ++++ ++|+|.||+ |||++|+|||+|||+..         .+++++.|..
T Consensus       274 ~g~~i~~D~Vi~a~G~~p~~~l--l~~~-l~~~-~~G~I~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~  349 (490)
T 2bc0_A          274 DKNEYDVDMVILAVGFRPNTTL--GNGK-IDLF-RNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVR  349 (490)
T ss_dssp             SSCEEECSEEEECCCEEECCGG--GTTC-SCBC-TTSCBCCCTTCBCSSTTEEECGGGBCEEETTTTEEECCCCHHHHHH
T ss_pred             CCcEEECCEEEECCCCCcChHH--HHhh-hccC-CCCCEEECCCcccCCCCEEEeeeeEEeccccCCceeecccHHHHHH
Confidence            4578999999999999999987  5666 8887 789999999 99999999999999841         1468999999


Q ss_pred             HHHHHHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhcc
Q psy3825          81 AGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYH  160 (332)
Q Consensus        81 qG~vAA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  160 (332)
                      ||++||.||+|......++..+++..+++|++++||+||++|++. |. ++.+.  .|+..     .+.           
T Consensus       350 qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~-g~-~~~~~--~~~~~-----~~~-----------  409 (490)
T 2bc0_A          350 TGIVAAHNACGTDLEGIGVQGSNGISIYGLHMVSTGLTLEKAKRL-GF-DAAVT--EYTDN-----QKP-----------  409 (490)
T ss_dssp             HHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHT-TC-CEEEE--EEEEE-----SSC-----------
T ss_pred             HHHHHHHHhcCCCCCCCCcccceEEEECCcEeEEeeCCHHHHHHc-CC-ceEEE--EEecC-----Ccc-----------
Confidence            999999999986533344556777777799999999999999986 43 24332  11100     000           


Q ss_pred             ccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcc
Q psy3825         161 AYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTE  240 (332)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (332)
                                                                                                .++|  
T Consensus       410 --------------------------------------------------------------------------~~~~--  413 (490)
T 2bc0_A          410 --------------------------------------------------------------------------EFIE--  413 (490)
T ss_dssp             --------------------------------------------------------------------------TTCC--
T ss_pred             --------------------------------------------------------------------------cccC--
Confidence                                                                                      0000  


Q ss_pred             cccccCCCcceEEEEEEecCCCCcEEEEEEeCc-cHHHHHHHHHHHHHCCCCHHHHhcc-cccCCCchHHHHHHHhhh
Q psy3825         241 FFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTITK  316 (332)
Q Consensus       241 ~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~-~a~e~i~~~~~ai~~~~t~~~l~~~-~~~~Pt~~e~~~~~~~~~  316 (332)
                           .+.+.+++|++++ +++++|||+|++|+ +|.|+|+.+++||+.|+|+++|..+ +++|||++|.+..+....
T Consensus       414 -----~~~~~~~~kl~~~-~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~~~~  485 (490)
T 2bc0_A          414 -----HGNFPVTIKIVYD-KDSRRILGAQMAAREDVSMGIHMFSLAIQEGVTIEKLALTDIFFLPHFNKPYNYITMAA  485 (490)
T ss_dssp             -----SSCCEEEEEEEEE-TTTCBEEEEEEEESSCCTTHHHHHHHHHHHTCBHHHHHHSCCCCCTTTCCTTCHHHHHH
T ss_pred             -----CCCceEEEEEEEE-CCCCEEEEEEEEcCcCHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCchhHHHHHHH
Confidence                 0245799999999 78999999999999 8999999999999999999999996 999999999998887654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.84  E-value=3.5e-21  Score=183.84  Aligned_cols=107  Identities=27%  Similarity=0.266  Sum_probs=90.5

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC-CC--CCchhHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH-EK--PELTPVAVQAG   82 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~-g~--~~la~vA~~qG   82 (332)
                      +.+++++++++|.||+|+|++||+++  ++++|++++  +| |.||+ |||++|+|||+|||+. .+  ..+++.|..||
T Consensus       222 v~~~~g~~i~~d~vv~a~G~~p~~~l--~~~~g~~~~--~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g  296 (384)
T 2v3a_A          222 AHLSDGEVIPCDLVVSAVGLRPRTEL--AFAAGLAVN--RG-IVVDRSLRTSHANIYALGDCAEVDGLNLLYVMPLMACA  296 (384)
T ss_dssp             EEETTSCEEEESEEEECSCEEECCHH--HHHTTCCBS--SS-EEECTTCBCSSTTEEECGGGEEETTBCCCSHHHHHHHH
T ss_pred             EEECCCCEEECCEEEECcCCCcCHHH--HHHCCCCCC--CC-EEECCCCCCCCCCEEEeeeeeeECCCCcchHHHHHHHH
Confidence            45567788999999999999999986  678899886  57 99999 9999999999999983 12  23577899999


Q ss_pred             HHHHHHHhCCCCcccccccceEEEEcC-ceeEEEcCCH
Q psy3825          83 KLLAARLYGNGTTQMDYQNVATTVFTP-LEYGCVGLSE  119 (332)
Q Consensus        83 ~vAA~nI~G~~~~~~~y~~vP~~vftd-Pe~AsVGLTE  119 (332)
                      +++|+||+|.. ..+++..+|+++|+. +++.++|+++
T Consensus       297 ~~~a~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~g~~~  333 (384)
T 2v3a_A          297 RALAQTLAGNP-SQVAYGPMPVTVKTPACPLVVSPPPR  333 (384)
T ss_dssp             HHHHHHHTTCC-CCCCCCCCCEEECCTTSCEEEECCCT
T ss_pred             HHHHHHhcCCC-ccCCCCCcceEEEECCeeEEEecCCC
Confidence            99999999865 567888999999986 5888888765

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.82  E-value=1.8e-20  Score=181.45  Aligned_cols=163  Identities=16%  Similarity=0.263  Sum_probs=129.3

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---CCCchhHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---KPELTPVAVQAGKLLAA   87 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---~~~la~vA~~qG~vAA~   87 (332)
                      ++++++|.|++|+|++||+++  ++++|++.+  +| |.||+ |||+.|+|||+|||+..   .+.+++.|..||++||.
T Consensus       215 g~~~~~D~vv~a~G~~p~~~~--~~~~gl~~~--~g-i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~  289 (385)
T 3klj_A          215 GDLIRSSCVITAVGVKPNLDF--IKDTEIASK--RG-ILVNDHMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGL  289 (385)
T ss_dssp             HHHHHHSEEEECCCEEECCGG--GTTSCCCBS--SS-EEECTTCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHH
T ss_pred             CeEEecCeEEECcCcccChhh--hhhcCCCcC--CC-EEECCCcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHH
Confidence            456889999999999999988  677888875  56 99999 99999999999999841   36789999999999999


Q ss_pred             HHhCCCCccccccc-ceE--EEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCC
Q psy3825          88 RLYGNGTTQMDYQN-VAT--TVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYK  164 (332)
Q Consensus        88 nI~G~~~~~~~y~~-vP~--~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  164 (332)
                      ||+|...   .+.. +|+  ..+++++++++|+++.++      +.. +.             ++               
T Consensus       290 ~i~g~~~---~~~~~~~~~~~~~~~~~~~~~G~~~~~~------~~~-~~-------------~~---------------  331 (385)
T 3klj_A          290 NACGEDA---SYSEIIPSPILKVSGISIISCGDIENNK------PSK-VF-------------RS---------------  331 (385)
T ss_dssp             HHTTCCC---CCCCCCCCCEEEETTEEEEEESCCTTCC------CSE-EE-------------EE---------------
T ss_pred             HhcCCCc---CCCCCCCcEEEEeCCCcEEEEcCCCCCC------CeE-EE-------------EE---------------
Confidence            9998653   2433 354  445899999999987531      111 10             00               


Q ss_pred             CcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccc
Q psy3825         165 PTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIP  244 (332)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (332)
                                                                                                      
T Consensus       332 --------------------------------------------------------------------------------  331 (385)
T 3klj_A          332 --------------------------------------------------------------------------------  331 (385)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHH
Q psy3825         245 QRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR  311 (332)
Q Consensus       245 ~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~  311 (332)
                        ....+|+|++++   +++|+|++++|..+.+.  .+..+|+.+.++++|       ||++|.|+.
T Consensus       332 --~~~~~~~~~~~~---~~~l~g~~~~g~~~~~~--~~~~~i~~~~~~~~~-------~~~~E~~~~  384 (385)
T 3klj_A          332 --TQEDKYIVCMLK---ENKIDAAAVIGDVSLGT--KLKKAIDSSKSFDNI-------SSLDAILNN  384 (385)
T ss_dssp             --ECSSCEEEEEEE---TTEEEEEEEESCHHHHH--HHHHHHHTTCBCSCC-------SCHHHHHTT
T ss_pred             --CCCCeEEEEEEE---CCEEEEEEEECCcHHHH--HHHHHHHcCCCcccc-------cCHHHHHhh
Confidence              124478899886   48999999999987665  688999999999988       999998863

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.80  E-value=6e-20  Score=176.01  Aligned_cols=107  Identities=20%  Similarity=0.277  Sum_probs=88.7

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC--C-CCCchhHHHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH--E-KPELTPVAVQA   81 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~--g-~~~la~vA~~q   81 (332)
                      ++.+++++ +++|.|++|+|++||+++  ++++|++.+  +| |.||+ |||+.|+|||+|||+.  + .+++++.|..|
T Consensus       213 ~v~~~~g~-i~~D~vi~a~G~~p~~~l--l~~~gl~~~--~g-i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~q  286 (367)
T 1xhc_A          213 GVLTNSGF-IEGKVKICAIGIVPNVDL--ARRSGIHTG--RG-ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQ  286 (367)
T ss_dssp             EEEETTEE-EECSCEEEECCEEECCHH--HHHTTCCBS--SS-EECCTTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHH
T ss_pred             EEEECCCE-EEcCEEEECcCCCcCHHH--HHhCCCCCC--CC-EEECCCcccCCCCEEEeEeeeecCCCCccHHHHHHHH
Confidence            45667777 999999999999999986  678899875  56 99999 9999999999999973  2 24689999999


Q ss_pred             HHHHHHHHhCCCCcccccccce--EEEEcCceeEEEcCCHH
Q psy3825          82 GKLLAARLYGNGTTQMDYQNVA--TTVFTPLEYGCVGLSEE  120 (332)
Q Consensus        82 G~vAA~nI~G~~~~~~~y~~vP--~~vftdPe~AsVGLTEe  120 (332)
                      |++||.||.|.. ..+++ .+|  ++.|++|++++||+||+
T Consensus       287 g~~aa~~i~g~~-~~~~~-~~~~~~~~~~~~~~~~vG~~~~  325 (367)
T 1xhc_A          287 ARVLADILKGEP-RRYNF-KFRSTVFKFGKLQIAIIGNTKG  325 (367)
T ss_dssp             HHHHHHHHTTCC-CCCCS-SCCEEEEEETTEEEEEEECCSS
T ss_pred             HHHHHHHhcCCC-ccCCC-CCCceEEEECCceEEEECCCCC
Confidence            999999999854 33443 234  35799999999999986

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.77  E-value=2e-18  Score=168.56  Aligned_cols=171  Identities=20%  Similarity=0.121  Sum_probs=130.4

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCC----------Cc
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKP----------EL   74 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~----------~l   74 (332)
                      .+.+++|+++++|.|++|+|++||+++  ++++|++++  +| |.||+ |||+.|+|||+|||+. .+          ..
T Consensus       228 ~v~~~~G~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~--~g-i~Vd~~~~ts~~~IyA~GD~~~-~~~~~~g~~~~~~~  301 (431)
T 1q1r_A          228 AVLCEDGTRLPADLVIAGIGLIPNCEL--ASAAGLQVD--NG-IVINEHMQTSDPLIMAVGDCAR-FHSQLYDRWVRIES  301 (431)
T ss_dssp             EEEETTSCEEECSEEEECCCEEECCHH--HHHTTCCBS--SS-EECCTTSBCSSTTEEECGGGEE-EEETTTTEEEECCS
T ss_pred             EEEeCCCCEEEcCEEEECCCCCcCcch--hhccCCCCC--CC-EEECCCcccCCCCEEEEEeEEE-EccccCCceEeeCH
Confidence            355667889999999999999999987  677899885  56 99999 9999999999999984 22          25


Q ss_pred             hhHHHHHHHHHHHHHhCCCCcccccccceEEE--EcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccc
Q psy3825          75 TPVAVQAGKLLAARLYGNGTTQMDYQNVATTV--FTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQR  152 (332)
Q Consensus        75 a~vA~~qG~vAA~nI~G~~~~~~~y~~vP~~v--ftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r  152 (332)
                      ++.|..||++||.||+|..   .++..+|+++  +.+++++++|+++..       +...+.             .+   
T Consensus       302 ~~~A~~qg~~aa~~i~g~~---~~~~~~p~~~~~~~~~~~~~~G~~~~~-------~~~~~~-------------~~---  355 (431)
T 1q1r_A          302 VPNALEQARKIAAILCGKV---PRDEAAPWFWSDQYEIGLKMVGLSEGY-------DRIIVR-------------GS---  355 (431)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---CCCCCCCEEEEEETTEEEEEEECCTTC-------SEEEEE-------------EE---
T ss_pred             HHHHHHHHHHHHHHhcCCC---CCCCCCCeEEEEECCceEEEEeCCCCC-------CEEEEE-------------cc---
Confidence            6889999999999999854   2466678653  345889999987621       111110             00   


Q ss_pred             hhhhhhccccCCCcccccCCCCCccchheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhh
Q psy3825         153 CYLKFIYHAYYKPTEFFIPQRNPQRCYLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIY  232 (332)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (332)
                                                                                                      
T Consensus       356 --------------------------------------------------------------------------------  355 (431)
T 1q1r_A          356 --------------------------------------------------------------------------------  355 (431)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCcccccccCCCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCc
Q psy3825         233 HAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTL  305 (332)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~  305 (332)
                                    ....+|++++ .  ++++|+|++++|..+.+.+.....+.+.+++.++|.+..+...++
T Consensus       356 --------------~~~~~~~~~~-~--~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~  411 (431)
T 1q1r_A          356 --------------LAQPDFSVFY-L--QGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEI  411 (431)
T ss_dssp             --------------TTTTEEEEEE-E--ETTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTCTTSCHHHH
T ss_pred             --------------CCCCeEEEEE-E--eCCEEEEEEEECChHHHHHHHHHHHCCCCCCHHHhhCCCCCHHHH
Confidence                          0123565554 3  358999999999999999999999999999999998876554443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.76  E-value=1.4e-17  Score=161.21  Aligned_cols=105  Identities=25%  Similarity=0.247  Sum_probs=86.6

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCC---------CCch
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEK---------PELT   75 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~---------~~la   75 (332)
                      .+.+++++++++|.|++|+|++||+++  ++++|++++  +| |.||+ |||+.|+|||+|||+...         ..++
T Consensus       217 ~v~~~~g~~i~~D~vi~a~G~~p~~~l--~~~~gl~~~--~g-i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~  291 (408)
T 2gqw_A          217 VVLLDDGTRIAADMVVVGIGVLANDAL--ARAAGLACD--DG-IFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETW  291 (408)
T ss_dssp             EEEETTSCEEECSEEEECSCEEECCHH--HHHHTCCBS--SS-EECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCH
T ss_pred             EEEECCCCEEEcCEEEECcCCCccHHH--HHhCCCCCC--CC-EEECCCCccCCCCEEEEEEEEEecCccCCceeeccHH
Confidence            355667889999999999999999987  677889885  57 99999 999999999999998421         1267


Q ss_pred             hHHHHHHHHHHHHHhCCCCcccccccceEEE--EcCceeEEEcC
Q psy3825          76 PVAVQAGKLLAARLYGNGTTQMDYQNVATTV--FTPLEYGCVGL  117 (332)
Q Consensus        76 ~vA~~qG~vAA~nI~G~~~~~~~y~~vP~~v--ftdPe~AsVGL  117 (332)
                      +.|..||++||.||.|...  .++..+|+++  +.+++++++|+
T Consensus       292 ~~A~~~g~~aa~~i~g~~~--~~~~~~p~~~~~~~~~~~~~~G~  333 (408)
T 2gqw_A          292 SNAQNQGIAVARHLVDPTA--PGYAELPWYWSDQGALRIQVAGL  333 (408)
T ss_dssp             HHHHHHHHHHHHHHHCTTS--CCCCCCCEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCC--CcCCCCCeEEEEECCceEEEECC
Confidence            8999999999999998643  1566778654  45699999998

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.66  E-value=2.2e-15  Score=145.64  Aligned_cols=106  Identities=20%  Similarity=0.173  Sum_probs=86.9

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCC--------CCchh
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEK--------PELTP   76 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~--------~~la~   76 (332)
                      ++.+++++++++|.||+|+|++||+++  ++++|++++  +| |.||+ +||+.|+|||+|||+...        ...++
T Consensus       219 ~v~~~dg~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~--~g-i~vd~~~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~  293 (410)
T 3ef6_A          219 QVMASDGRSFVADSALICVGAEPADQL--ARQAGLACD--RG-VIVDHCGATLAKGVFAVGDVASWPLRAGGRRSLETYM  293 (410)
T ss_dssp             EEEETTSCEEECSEEEECSCEEECCHH--HHHTTCCBS--SS-EECCTTSBCSSTTEEECGGGEEEEBTTSSEECCCCHH
T ss_pred             EEEECCCCEEEcCEEEEeeCCeecHHH--HHhCCCccC--Ce-EEEccCeeECCCCEEEEEcceeccCCCCCeeeechHH
Confidence            466778889999999999999999987  678899885  56 99999 999999999999998411        23478


Q ss_pred             HHHHHHHHHHHHHhCCCCcccccccceEE--EEcCceeEEEcCCH
Q psy3825          77 VAVQAGKLLAARLYGNGTTQMDYQNVATT--VFTPLEYGCVGLSE  119 (332)
Q Consensus        77 vA~~qG~vAA~nI~G~~~~~~~y~~vP~~--vftdPe~AsVGLTE  119 (332)
                      .|..||++||.||+|..   ..|..+|+.  .+.+..+..+|+++
T Consensus       294 ~A~~qg~~aa~~i~g~~---~~~~~~p~~~~~~~~~~~~~~G~~~  335 (410)
T 3ef6_A          294 NAQRQAAAVAAAILGKN---VSAPQLPVSWTEIAGHRMQMAGDIE  335 (410)
T ss_dssp             HHHHHHHHHHHHHTTCC---CCCCBCCEEEEEETTEEEEEESCSS
T ss_pred             HHHHHHHHHHHHHcCCC---CCCCCCCeeEEEECCceEEEEcCCC
Confidence            99999999999999864   356667754  35678888898765

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.63  E-value=4.8e-15  Score=142.78  Aligned_cols=106  Identities=25%  Similarity=0.286  Sum_probs=87.3

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCC----------Cc
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKP----------EL   74 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~----------~l   74 (332)
                      ++.+++++++++|.||+|+|++||+++  ++++|++.+  +| |.||+ +||++|+|||+|||+....          ..
T Consensus       229 ~v~l~dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~--~g-i~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~  303 (415)
T 3lxd_A          229 GVRMQDGSVIPADIVIVGIGIVPCVGA--LISAGASGG--NG-VDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLES  303 (415)
T ss_dssp             EEEESSSCEEECSEEEECSCCEESCHH--HHHTTCCCS--SS-EECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCS
T ss_pred             EEEeCCCCEEEcCEEEECCCCccChHH--HHhCCCCcC--CC-EEECCCCCcCCCCEEEEEeeeeecCcccCCcceeech
Confidence            466778889999999999999999987  677899875  56 99999 9999999999999984211          13


Q ss_pred             hhHHHHHHHHHHHHHhCCCCcccccccceE--EEEcCceeEEEcCCH
Q psy3825          75 TPVAVQAGKLLAARLYGNGTTQMDYQNVAT--TVFTPLEYGCVGLSE  119 (332)
Q Consensus        75 a~vA~~qG~vAA~nI~G~~~~~~~y~~vP~--~vftdPe~AsVGLTE  119 (332)
                      ++.|..||++||+||+|..   ..|..+|+  +.+.+..+..+|+++
T Consensus       304 ~~~A~~qg~~aa~~i~g~~---~~~~~~p~~~~~~~~~~~~~~G~~~  347 (415)
T 3lxd_A          304 VQNANDMATAAAKDICGAP---VPYKATPWFWSNQYDLKLQTVGLST  347 (415)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---CCCCCCCEEEEEETTEEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHhcCCC---CCCCCCCeeEeeeCCcEEEEEeCCC
Confidence            5899999999999999864   24666775  456688999999874

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.61  E-value=6.1e-15  Score=141.83  Aligned_cols=106  Identities=24%  Similarity=0.239  Sum_probs=87.5

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCC---------CCch
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEK---------PELT   75 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~---------~~la   75 (332)
                      ++.+++|+++++|.||+|+|++||+++  ++++|++++  +| |.||+ +||+.|+|||+|||+...         ...+
T Consensus       219 ~V~~~dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~--~G-i~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~  293 (404)
T 3fg2_P          219 GVVLSDGNTLPCDLVVVGVGVIPNVEI--AAAAGLPTA--AG-IIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESV  293 (404)
T ss_dssp             EEEETTSCEEECSEEEECCCEEECCHH--HHHTTCCBS--SS-EEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSH
T ss_pred             EEEeCCCCEEEcCEEEECcCCccCHHH--HHhCCCCCC--CC-EEECCCcccCCCCEEEeecceeecCccCCceeeehHH
Confidence            466778889999999999999999987  677899885  56 99999 999999999999998411         1247


Q ss_pred             hHHHHHHHHHHHHHhCCCCcccccccceE--EEEcCceeEEEcCCH
Q psy3825          76 PVAVQAGKLLAARLYGNGTTQMDYQNVAT--TVFTPLEYGCVGLSE  119 (332)
Q Consensus        76 ~vA~~qG~vAA~nI~G~~~~~~~y~~vP~--~vftdPe~AsVGLTE  119 (332)
                      +.|..||++||.||+|..   ..|..+|+  +.+.+..+..+|++.
T Consensus       294 ~~A~~qg~~aa~~i~g~~---~~~~~~p~~~~~~~~~~~~~~G~~~  336 (404)
T 3fg2_P          294 QNATDQARCVAARLTGDA---KPYDGYPWFWSDQGDDKLQIVGLTA  336 (404)
T ss_dssp             HHHHHHHHHHHHHTTTCC---CCCCCCCEEEEEETTEEEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCC---CCCCCCCceEeEECCcEEEEEeCCC
Confidence            899999999999999864   34666664  556788999999874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.50  E-value=2.9e-14  Score=129.72  Aligned_cols=77  Identities=22%  Similarity=0.202  Sum_probs=65.2

Q ss_pred             cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      .++++++++|.|++|+|++||+++|+   .+++++ ++|.| ||+ ||||+|||||+|||+.+...++..|+.||+.||.
T Consensus       231 ~~~~~~i~~d~vi~a~G~~pn~~~l~---~~~~~~-~~G~i-v~~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~  305 (314)
T 4a5l_A          231 SGEYKVVPVAGLFYAIGHSPNSKFLG---GQVKTA-DDGYI-LTEGPKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAAL  305 (314)
T ss_dssp             TCCEEEEECSEEEECSCEEESCGGGT---TSSCBC-TTSCB-CCBTTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHH
T ss_pred             cccceeeccccceEecccccChhHhc---ccceEc-CCeeE-eCCCCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHH
Confidence            45678999999999999999999864   347777 77854 899 9999999999999994334588999999999999


Q ss_pred             HHh
Q psy3825          88 RLY   90 (332)
Q Consensus        88 nI~   90 (332)
                      ++.
T Consensus       306 ~~~  308 (314)
T 4a5l_A          306 SCE  308 (314)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.48  E-value=5.2e-14  Score=129.09  Aligned_cols=78  Identities=23%  Similarity=0.300  Sum_probs=68.7

Q ss_pred             cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      .+++.++++|.|++++|++||+.+  ++.+|+..  ++|+|.||+ ||||+|||||+|||+...+++++.|+.||++||.
T Consensus       224 ~~~~~~~~~d~v~~~~g~~~~~~~--~~~~g~~~--~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~  299 (312)
T 4gcm_A          224 DGSEETHEADGVFIYIGMKPLTAP--FKDLGITN--DVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQ  299 (312)
T ss_dssp             TCCEEEEECSEEEECSCEEESCGG--GGGGTCBC--TTSCBCCCTTSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHH
T ss_pred             CCceeEEeeeeEEeecCCCcCchh--HHhcceec--CCCeEeeCCCCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHH
Confidence            456678999999999999999987  56777754  589999999 9999999999999984456799999999999999


Q ss_pred             HHh
Q psy3825          88 RLY   90 (332)
Q Consensus        88 nI~   90 (332)
                      +|.
T Consensus       300 ~i~  302 (312)
T 4gcm_A          300 SAA  302 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.46  E-value=3.8e-14  Score=130.33  Aligned_cols=82  Identities=12%  Similarity=0.133  Sum_probs=71.1

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      .+.+++++++++|.+++++|.+|++.+  ++++|++++ ++|+|.||+ ||||+|||||+|||++..+..+..|+.||+.
T Consensus       214 ~v~~~~g~~i~~~~~vi~~g~~~~~~~--~~~~g~~~~-~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~  290 (304)
T 4fk1_A          214 KVEFHSGLRIERAGGFIVPTFFRPNQF--IEQLGCELQ-SNGTFVIDDFGRTSEKNIYLAGETTTQGPSSLIIAASQGNK  290 (304)
T ss_dssp             EEEETTSCEECCCEEEECCEEECSSCH--HHHTTCCCC-TTSSSCSSTTCBCSSTTEEECSHHHHTSCCCHHHHHHHHHH
T ss_pred             eeeccccceeeecceeeeeccccCChh--hhhcCeEEC-CCCCEEECcCCccCCCCEEEEeccCCCcchHHHHHHHHHHH
Confidence            466788899999999998888887776  678899998 899999999 9999999999999984345668899999999


Q ss_pred             HHHHHh
Q psy3825          85 LAARLY   90 (332)
Q Consensus        85 AA~nI~   90 (332)
                      ||..|.
T Consensus       291 AA~~i~  296 (304)
T 4fk1_A          291 AAIAIN  296 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.42  E-value=2.7e-13  Score=124.41  Aligned_cols=76  Identities=30%  Similarity=0.343  Sum_probs=67.9

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      .++++|.|++|+|++||+++  +++.|++++ ++|+|.||+ +||+.|+|||+|||+...+.+++.|..||+.||.+|..
T Consensus       237 ~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          237 KLIETDGVFIYVGLIPQTSF--LKDSGVKLD-ERGYIVVDSRQRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             EEECCSEEEECCCEEECCGG--GTTSCCCBC-TTSCBCCCTTCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCEEEEeeCCccChHH--Hhhcccccc-CCccEeCCCCCccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHH
Confidence            47999999999999999988  567789988 789999999 99999999999999943357899999999999999863

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.42  E-value=3.8e-13  Score=122.46  Aligned_cols=76  Identities=21%  Similarity=0.170  Sum_probs=66.9

Q ss_pred             eEEEcCEEEEccCccccCcccccccc----CceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHH
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNA----GVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAA   87 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~a----Gl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~   87 (332)
                      .++++|.|++|+|++||++++  +..    |++++ ++|+|.||+ +||++|+|||+|||+...+++++.|..||+.||.
T Consensus       226 ~~i~~D~vi~a~G~~p~~~~l--~~~g~~~~l~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~  302 (311)
T 2q0l_A          226 RELVVPGFFIFVGYDVNNAVL--KQEDNSMLCKCD-EYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASDGATAAL  302 (311)
T ss_dssp             EEEECSEEEECSCEEECCGGG--BCTTSCBSSCBC-TTSCBCCCTTCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHH
T ss_pred             EEEecCEEEEEecCccChhhh--hcccccceeEec-cCCCEEeCCccccCCCCeEEcccccCcchHHHHHHHHhHHHHHH
Confidence            479999999999999999884  455    48888 789999999 9999999999999994347899999999999999


Q ss_pred             HHhC
Q psy3825          88 RLYG   91 (332)
Q Consensus        88 nI~G   91 (332)
                      ||..
T Consensus       303 ~i~~  306 (311)
T 2q0l_A          303 SVIS  306 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9863

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.40  E-value=3.4e-13  Score=121.81  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=68.4

Q ss_pred             eEEEcCEEEEccCccccCccccc-cccC-ceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAV-SNAG-VKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~L-e~aG-l~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      .++++|.|++|+|++|+++++.. +.+| ++++ ++|+|.||+ +||++|+|||+|||+...+..+..|+.||+.||.+|
T Consensus       229 ~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~-~~g~i~vd~~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i  307 (315)
T 3r9u_A          229 RDLNVPGIFTFVGLNVRNEILKQDDSKFLCNME-EGGQVSVDLKMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSA  307 (315)
T ss_dssp             EEECCSCEEECSCEEECCGGGBCTTSCBSSCBC-TTSCBCCCTTCBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHH
T ss_pred             EEeecCeEEEEEcCCCCchhhhcccccceeeec-CCCcEEeCCCcccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHH
Confidence            48999999999999999998654 3466 9888 789999999 999999999999998446788999999999999998


Q ss_pred             h
Q psy3825          90 Y   90 (332)
Q Consensus        90 ~   90 (332)
                      .
T Consensus       308 ~  308 (315)
T 3r9u_A          308 M  308 (315)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.40  E-value=3.7e-13  Score=128.11  Aligned_cols=108  Identities=16%  Similarity=0.099  Sum_probs=82.0

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CC-CCCCcEEEecccCCC--CCCchhHHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQ-TNIPNVFAVGDVLHE--KPELTPVAVQ   80 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lq-TSvpgIYAiGDva~g--~~~la~vA~~   80 (332)
                      .+.+++++++++|.|++++|++|+. +  ++++|+. + ++|+|.||+  || |+.|||||+|||+++  .+++++.|.+
T Consensus       236 ~v~~~~g~~i~~D~vi~~~g~~~~~-~--~~~~gl~-~-~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~  310 (401)
T 3vrd_B          236 TVETSFGETFKAAVINLIPPQRAGK-I--AQSASLT-N-DSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANS  310 (401)
T ss_dssp             EEEETTSCEEECSEEEECCCEEECH-H--HHHTTCC-C-TTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHH
T ss_pred             EEEcCCCcEEEeeEEEEecCcCCch-h--Hhhcccc-c-cCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHH
Confidence            3667888999999999999999984 4  5678884 5 789999998  55 789999999999853  3578999999


Q ss_pred             HHHHHHHHHh----CCCCcccccccceEEEEcCceeEEEcCCH
Q psy3825          81 AGKLLAARLY----GNGTTQMDYQNVATTVFTPLEYGCVGLSE  119 (332)
Q Consensus        81 qG~vAA~nI~----G~~~~~~~y~~vP~~vftdPe~AsVGLTE  119 (332)
                      ||+++|+||.    |++..+..|....++ +..+.++.+.+++
T Consensus       311 qa~v~A~ni~~~l~G~~~~~~~y~~~~~~-~~~~~~~~~~~~~  352 (401)
T 3vrd_B          311 QAKVAAAAVVALLKGEEPGTPSYLNTCYS-ILAPGYGISIAAV  352 (401)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCEEEEEEE-EEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccCCeEEE-EEecCCceEEEEE
Confidence            9999999987    544444445544333 3345666665544

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.40  E-value=2.8e-13  Score=121.38  Aligned_cols=82  Identities=20%  Similarity=0.185  Sum_probs=72.1

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeec-CCC-eeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIP-ENA-KIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAG   82 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~-e~G-~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG   82 (332)
                      .+.+.+++++++|.|++++|++|++++  ++++|++++. ++| +|.||+ ++|+.|+|||+|||+ +.+.+++.|..||
T Consensus       204 ~v~~~~g~~~~~D~vi~a~G~~p~~~~--~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~-~~~~~~~~A~~~g  280 (297)
T 3fbs_A          204 DVVLADGRSIALAGLFTQPKLRITVDW--IEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVA-RPAGSVALAVGDG  280 (297)
T ss_dssp             EEEETTSCEEEESEEEECCEEECCCSC--HHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGG-CTTCCHHHHHHHH
T ss_pred             eEEeCCCCEEEEEEEEEccCcccCchh--HHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecC-CchHHHHHHHHhH
Confidence            466778889999999999999999987  6778887762 246 899999 999999999999999 5688999999999


Q ss_pred             HHHHHHHh
Q psy3825          83 KLLAARLY   90 (332)
Q Consensus        83 ~vAA~nI~   90 (332)
                      +.||.+|.
T Consensus       281 ~~aa~~i~  288 (297)
T 3fbs_A          281 AMAGAAAH  288 (297)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999986

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.37  E-value=9.6e-13  Score=121.04  Aligned_cols=75  Identities=29%  Similarity=0.271  Sum_probs=66.3

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      +++++|.|++|+|++||+++  +++. ++++ ++|+|.||+ +||+.|+|||+|||+...+++++.|..||+.||.||..
T Consensus       234 ~~i~~D~vi~a~G~~p~~~~--l~~~-~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          234 SELATDGVFIFIGHVPNTAF--VKDT-VSLR-DDGYVDVRDEIYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTER  309 (325)
T ss_dssp             EEEECSEEEECSCEEESCGG--GTTT-SCBC-TTSCBCCBTTTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEEccCCCCChHH--Hhhh-cccC-CCccEecCCCCccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999988  4555 7787 789999999 99999999999999843368899999999999999974

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.36  E-value=6.7e-13  Score=120.02  Aligned_cols=76  Identities=28%  Similarity=0.365  Sum_probs=68.4

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC--CCCchhHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE--KPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g--~~~la~vA~~qG~vAA~n   88 (332)
                      ..++++|.|++++|++|++++  ++..|++++ ++|+|.||+ ++|+.|+|||+|||+..  .+.+++.|..||+.||.+
T Consensus       235 ~~~~~~D~vv~a~G~~p~~~~--~~~~g~~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~  311 (323)
T 3f8d_A          235 IKELNVNGVFIEIGFDPPTDF--AKSNGIETD-TNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATS  311 (323)
T ss_dssp             EEEEECSEEEECCCEECCHHH--HHHTTCCBC-TTSSBCCCTTCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEcCEEEEEECCCCChhH--HhhcCeeec-CCCcEecCCCceecCCCEEEcceecCCCCcccceeehhhHHHHHHHH
Confidence            348999999999999999987  678899998 789999999 99999999999999932  378899999999999999


Q ss_pred             Hh
Q psy3825          89 LY   90 (332)
Q Consensus        89 I~   90 (332)
                      |.
T Consensus       312 i~  313 (323)
T 3f8d_A          312 AY  313 (323)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.36  E-value=1.4e-12  Score=118.74  Aligned_cols=76  Identities=18%  Similarity=0.177  Sum_probs=68.4

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC--CCCCchhHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH--EKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~--g~~~la~vA~~qG~vAA~n   88 (332)
                      ++++++|.|++|+|++|++++  ++..|++++  +|+|.||+ +||+.|+|||+|||+.  +.+.+++.|..||+.||.+
T Consensus       234 ~~~~~~D~vv~a~G~~p~~~~--~~~~~~~~~--~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~  309 (332)
T 3lzw_A          234 KEILEIDDLIVNYGFVSSLGP--IKNWGLDIE--KNSIVVKSTMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNN  309 (332)
T ss_dssp             EEEEECSEEEECCCEECCCGG--GGGSSCCEE--TTEEECCTTSBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHH
T ss_pred             eEEEECCEEEEeeccCCCchH--HhhcCcccc--CCeEEeCCCCceecCCEEEccceecCCCCcceEeeehhhHHHHHHH
Confidence            678999999999999999987  678888885  78999999 9999999999999984  3578899999999999999


Q ss_pred             HhC
Q psy3825          89 LYG   91 (332)
Q Consensus        89 I~G   91 (332)
                      |..
T Consensus       310 i~~  312 (332)
T 3lzw_A          310 AKA  312 (332)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            973

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.34  E-value=2e-12  Score=117.70  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=65.1

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      .++++|.|++|+|++||+++|  ++ .++++ ++|+|.||+ +||+.|+|||+|||+......+..|+.||+.||.+|..
T Consensus       227 ~~i~~D~vi~a~G~~p~~~~l--~~-~l~~~-~~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          227 HNIELAGIFVQIGLLPNTNWL--EG-AVERN-RMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             EEEECSEEEECSCEEESCGGG--TT-TSCBC-TTSCBCCCTTCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEEeeCCccCchHH--hc-ccccc-CCCcEEcCCCCccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHH
Confidence            579999999999999999874  44 37787 789999999 99999999999999943346789999999999999863

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.34  E-value=1.1e-12  Score=111.50  Aligned_cols=77  Identities=21%  Similarity=0.274  Sum_probs=65.8

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCC-chhHHHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPE-LTPVAVQAGKL   84 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~-la~vA~~qG~v   84 (332)
                      +.++++ ++++|.||+|+|.+|+.    ++..|++++  +|.|.||+ +||+.|+|||+|||+ ..+. +++.|..||+.
T Consensus        90 v~~~~g-~i~ad~vI~A~G~~~~~----~~~~g~~~~--~g~i~vd~~~~t~~~~i~a~GD~~-~~~~~~~~~A~~~g~~  161 (180)
T 2ywl_A           90 VETEEG-VEKAERLLLCTHKDPTL----PSLLGLTRR--GAYIDTDEGGRTSYPRVYAAGVAR-GKVPGHAIISAGDGAY  161 (180)
T ss_dssp             EECSSC-EEEEEEEEECCTTCCHH----HHHHTCCEE--TTEECCCTTCBCSSTTEEECGGGG-TCCSCCHHHHHHHHHH
T ss_pred             EEECCC-EEEECEEEECCCCCCCc----cccCCCCcc--CceEEeCCCCCcCCCCEEEeeccc-CcchhhHHHHHHhHHH
Confidence            445566 89999999999999964    345678886  78999999 999999999999999 4544 89999999999


Q ss_pred             HHHHHhC
Q psy3825          85 LAARLYG   91 (332)
Q Consensus        85 AA~nI~G   91 (332)
                      ||.||.+
T Consensus       162 aa~~i~~  168 (180)
T 2ywl_A          162 VAVHLVS  168 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999985

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.32  E-value=2.9e-12  Score=117.76  Aligned_cols=75  Identities=25%  Similarity=0.335  Sum_probs=67.1

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC--CCCCchhHHHHHHHHHHHHH
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH--EKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~--g~~~la~vA~~qG~vAA~nI   89 (332)
                      +++++|.|++|+|++||+++  ++++|++++  +|+|.||+ +||++|+|||+|||+.  +.+.+++.|..||+.+|.||
T Consensus       237 ~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~--~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i  312 (335)
T 2zbw_A          237 LALEVDAVLILAGYITKLGP--LANWGLALE--KNKIKVDTTMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHA  312 (335)
T ss_dssp             EEEECSEEEECCCEEEECGG--GGGSCCCEE--TTEEECCTTCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEecCEEEEeecCCCCchH--hhhcceecc--CCeeeeCCCCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHH
Confidence            78999999999999999987  577889886  68899999 9999999999999984  24678999999999999999


Q ss_pred             hC
Q psy3825          90 YG   91 (332)
Q Consensus        90 ~G   91 (332)
                      .+
T Consensus       313 ~~  314 (335)
T 2zbw_A          313 AA  314 (335)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.32  E-value=3e-12  Score=116.78  Aligned_cols=75  Identities=23%  Similarity=0.247  Sum_probs=66.4

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeec-CC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDS-DN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~V-De-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      ++++++|.|++|+|++|+++++  +. +++++ ++|+|.| |+ ++|+.|+|||+|||+...+..+..|+.+|+.||.+|
T Consensus       255 ~~~i~~D~vi~a~G~~p~~~~~--~~-~l~~~-~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i  330 (338)
T 3itj_A          255 ETDLPVSGLFYAIGHTPATKIV--AG-QVDTD-EAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDA  330 (338)
T ss_dssp             EEEEECSEEEECSCEEECCGGG--BT-TBCBC-TTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCEEEEEeCCCCChhHh--hC-ceEec-CCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHH
Confidence            6789999999999999999874  33 89998 7999996 67 999999999999999545678999999999999998


Q ss_pred             h
Q psy3825          90 Y   90 (332)
Q Consensus        90 ~   90 (332)
                      .
T Consensus       331 ~  331 (338)
T 3itj_A          331 E  331 (338)
T ss_dssp             H
T ss_pred             H
Confidence            6

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.30  E-value=4.7e-12  Score=115.73  Aligned_cols=82  Identities=13%  Similarity=0.206  Sum_probs=70.9

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC---CCCCCCcEEEec--ccCCCCCCchhHHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN---EQTNIPNVFAVG--DVLHEKPELTPVAVQ   80 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe---lqTSvpgIYAiG--Dva~g~~~la~vA~~   80 (332)
                      ++.+++++++++|.|++|+|++||+++  ++++|+. + ++|+|.||+   ++|+.|+|||+|  ||+...+..+..|..
T Consensus       263 ~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~-~-~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~  338 (357)
T 4a9w_A          263 GMQWADGTERAFDAVIWCTGFRPALSH--LKGLDLV-T-PQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTR  338 (357)
T ss_dssp             EEECTTSCEEECSEEEECCCBCCCCGG--GTTTTCB-C-TTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHH
T ss_pred             eeEECCCCEecCCEEEECCCcCCCCcc--cCccccc-C-CCCCccccCCcccCCCCCCeEEeccccccccchhhhhhhHH
Confidence            467778899999999999999999998  6778888 6 789999998   479999999999  666335677888999


Q ss_pred             HHHHHHHHHhC
Q psy3825          81 AGKLLAARLYG   91 (332)
Q Consensus        81 qG~vAA~nI~G   91 (332)
                      ||+.+|.+|..
T Consensus       339 ~g~~~a~~i~~  349 (357)
T 4a9w_A          339 YAREAVRQVTA  349 (357)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999974

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.29  E-value=3.7e-12  Score=126.57  Aligned_cols=91  Identities=18%  Similarity=0.231  Sum_probs=72.8

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecC-CCeeecCC-CCCCCCcEEEecccCCC------C--CCchh
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPE-NAKIDSDN-EQTNIPNVFAVGDVLHE------K--PELTP   76 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e-~G~I~VDe-lqTSvpgIYAiGDva~g------~--~~la~   76 (332)
                      +.+++|+++++|.||+|+|++||+++  ++++|++++ + +|+|.||+ ||| .|+|||+|||+..      .  ...+.
T Consensus       261 v~l~dG~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~-~~~ggi~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~~~~~~~  336 (493)
T 1m6i_A          261 IKLKDGRKVETDHIVAAVGLEPNVEL--AKTGGLEID-SDFGGFRVNAELQA-RSNIWVAGDAACFYDIKLGRRRVEHHD  336 (493)
T ss_dssp             EEETTSCEEEESEEEECCCEEECCTT--HHHHTCCBC-TTTCSEECCTTCEE-ETTEEECGGGEEEEETTTEEECCCCHH
T ss_pred             EEECCCCEEECCEEEECCCCCccHHH--HHHcCCccc-cCCCcEEECCCccc-CCCeeEeeeeEeccCcccCccccchHH
Confidence            55667889999999999999999987  577889887 4 57899999 998 5999999999841      1  12355


Q ss_pred             HHHHHHHHHHHHHhCCCCcccccccceE
Q psy3825          77 VAVQAGKLLAARLYGNGTTQMDYQNVAT  104 (332)
Q Consensus        77 vA~~qG~vAA~nI~G~~~~~~~y~~vP~  104 (332)
                      .|..||++||.||+|.. .  .|...|+
T Consensus       337 ~A~~qg~~aa~ni~g~~-~--~~~~~~~  361 (493)
T 1m6i_A          337 HAVVSGRLAGENMTGAA-K--PYWHQSM  361 (493)
T ss_dssp             HHHHHHHHHHHHHTSCC-C--CCCCCCE
T ss_pred             HHHHHHHHHHHHhcCCC-C--CcCCcCc
Confidence            89999999999999854 2  3444554

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.29  E-value=5.5e-13  Score=144.19  Aligned_cols=107  Identities=20%  Similarity=0.084  Sum_probs=84.4

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      .++++|.||+|+|++|+...|..+..|++++ ++|+|.||+  +||++|+|||+|||+ +.+.+++.|+.||+.||.+|.
T Consensus       427 ~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~-~~G~I~vd~~~~~Ts~~~VfA~GD~~-~~~~~~~~A~~~G~~aA~~i~  504 (1025)
T 1gte_A          427 VHLKADVVISAFGSVLRDPKVKEALSPIKFN-RWDLPEVDPETMQTSEPWVFAGGDIV-GMANTTVESVNDGKQASWYIH  504 (1025)
T ss_dssp             EEEECSEEEECSCEECCCHHHHHHTTTSCBC-TTSSBCCCTTTCBCSSTTEEECSGGG-CSCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCEEEECCCCCCCchhhhhcccCceEC-CCCCEEECCCCCccCCCCEEEeCCCC-CCchHHHHHHHHHHHHHHHHH
Confidence            5799999999999997654443233589998 789999996  999999999999999 678899999999999999997


Q ss_pred             CCCC--cccccccceEEEEcCceeEEEcCCHHH
Q psy3825          91 GNGT--TQMDYQNVATTVFTPLEYGCVGLSEEK  121 (332)
Q Consensus        91 G~~~--~~~~y~~vP~~vftdPe~AsVGLTEe~  121 (332)
                      +...  ...++..+|.+.|+.|+++.+|++.+.
T Consensus       505 ~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~  537 (1025)
T 1gte_A          505 KYIQAQYGASVSAKPELPLFYTPVDLVDISVEM  537 (1025)
T ss_dssp             HHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEE
T ss_pred             HHHHhccCCCcccCcCccccccccccccceeee
Confidence            4210  113455567777888888888776543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.28  E-value=7.5e-12  Score=114.94  Aligned_cols=76  Identities=26%  Similarity=0.321  Sum_probs=65.7

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      +++++++|.|++|+|++||++++.   .+++++ ++|+|.||+  ++|+.|+|||+|||+...+..+..|..+|+.||.+
T Consensus       242 ~~~~i~~D~vi~a~G~~p~~~~~~---~~l~~~-~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~  317 (333)
T 1vdc_A          242 DVSDLKVSGLFFAIGHEPATKFLD---GGVELD-SDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALD  317 (333)
T ss_dssp             CEEEEECSEEEECSCEEESCGGGT---TSSCBC-TTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEecCEEEEEeCCccchHHhh---cccccc-CCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHH
Confidence            346899999999999999998743   478887 789999998  58999999999999843347899999999999999


Q ss_pred             Hh
Q psy3825          89 LY   90 (332)
Q Consensus        89 I~   90 (332)
                      |.
T Consensus       318 i~  319 (333)
T 1vdc_A          318 AE  319 (333)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.27  E-value=8.1e-12  Score=116.67  Aligned_cols=75  Identities=13%  Similarity=0.253  Sum_probs=67.1

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC--CCCCchhHHHHHHHHHHHHH
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH--EKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~--g~~~la~vA~~qG~vAA~nI   89 (332)
                      +++++|.|++|+|++||+++  ++..|++++  +|+|.||+ +||++|+|||+|||+.  +.+.+++.|..||++||.+|
T Consensus       248 ~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~--~g~i~vd~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i  323 (360)
T 3ab1_A          248 WTVEADRLLILIGFKSNLGP--LARWDLELY--ENALVVDSHMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHS  323 (360)
T ss_dssp             EEEECSEEEECCCBCCSCGG--GGGSSCCEE--TTEEECCTTSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCEEEECCCCCCCHHH--HHhhccccc--cCeeeecCCCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHH
Confidence            68999999999999999987  567888886  68899999 9999999999999984  24678999999999999999


Q ss_pred             hC
Q psy3825          90 YG   91 (332)
Q Consensus        90 ~G   91 (332)
                      .+
T Consensus       324 ~~  325 (360)
T 3ab1_A          324 LS  325 (360)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.26  E-value=6.6e-12  Score=116.41  Aligned_cols=75  Identities=20%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      ++++++|.|++|+|++||++++.   .+++++ ++|+|.||+  ++|+.|+|||+|||+...+..+..|..+|+.||.+|
T Consensus       236 ~~~i~~D~vi~a~G~~p~~~~~~---~~l~~~-~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i  311 (335)
T 2a87_A          236 ETTLPVTGVFVAIGHEPRSGLVR---EAIDVD-PDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDA  311 (335)
T ss_dssp             CEEECCSCEEECSCEEECCTTTB---TTBCBC-TTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHH
T ss_pred             eEEeecCEEEEccCCccChhHhh---cccccC-CCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHH
Confidence            36899999999999999998743   478888 789999998  589999999999999433578899999999999998


Q ss_pred             h
Q psy3825          90 Y   90 (332)
Q Consensus        90 ~   90 (332)
                      .
T Consensus       312 ~  312 (335)
T 2a87_A          312 E  312 (335)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.26  E-value=5e-12  Score=125.42  Aligned_cols=78  Identities=26%  Similarity=0.320  Sum_probs=69.0

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      +.++++|.||+|+|++||+..+-+++.|++++ ++|+|.||+  +||++|+|||+|||+ ..+.++..|+.||+.||.+|
T Consensus       362 ~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~-~~G~i~vd~~~~~Ts~~~VfA~GD~~-~g~~~v~~A~~~G~~aA~~i  439 (456)
T 2vdc_G          362 EFTVQADLVIKALGFEPEDLPNAFDEPELKVT-RWGTLLVDHRTKMTNMDGVFAAGDIV-RGASLVVWAIRDGRDAAEGI  439 (456)
T ss_dssp             EEEEECSEEEECSCEECCCHHHHHHSTTSCBC-TTSSBCCCTTTCBCSSTTEEECGGGG-SSCCSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEECCCCCCCcchhhcccCCeeEC-CCCCEEECCCCCcCCCCCEEEecccc-CCchHHHHHHHHHHHHHHHH
Confidence            46899999999999999986312677899998 789999998  899999999999998 56789999999999999998


Q ss_pred             hC
Q psy3825          90 YG   91 (332)
Q Consensus        90 ~G   91 (332)
                      .+
T Consensus       440 ~~  441 (456)
T 2vdc_G          440 HA  441 (456)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.23  E-value=1.1e-11  Score=124.34  Aligned_cols=76  Identities=22%  Similarity=0.267  Sum_probs=63.4

Q ss_pred             eEEEcCEEEEccCccccC--ccccccccCceeecCCCeeecCC-CCC-CCCcEEEecccCC-CCCCchhHHHHHHHHHHH
Q psy3825          13 FEDTYDTVLMAIGRRALT--EETAVSNAGVKVIPENAKIDSDN-EQT-NIPNVFAVGDVLH-EKPELTPVAVQAGKLLAA   87 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt--~~L~Le~aGl~ld~e~G~I~VDe-lqT-SvpgIYAiGDva~-g~~~la~vA~~qG~vAA~   87 (332)
                      ++|++|.||||+|++||.  ..| ....++..+ .+|+|.||+ ||| +.|||||+|||+. +.++++++|.+||+++|+
T Consensus       317 ~~i~ad~viwa~Gv~~~~~~~~l-~~~~~~~~~-~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~  394 (502)
T 4g6h_A          317 ETIPYGTLIWATGNKARPVITDL-FKKIPEQNS-SKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAK  394 (502)
T ss_dssp             EEEECSEEEECCCEECCHHHHHH-HHHSGGGTT-CCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHH
T ss_pred             eeeccCEEEEccCCcCCHHHHhH-HHhcccccc-CCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHH
Confidence            479999999999999984  222 234566666 678999999 998 8999999999985 356789999999999999


Q ss_pred             HHh
Q psy3825          88 RLY   90 (332)
Q Consensus        88 nI~   90 (332)
                      ||.
T Consensus       395 ni~  397 (502)
T 4g6h_A          395 NFD  397 (502)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            985

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.22  E-value=2.5e-11  Score=110.62  Aligned_cols=75  Identities=24%  Similarity=0.259  Sum_probs=64.9

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-C-----CCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-E-----QTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-l-----qTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      +++++++|.|++|+|++||++++.   .+++++  +|+|.||+ |     +|+.|+|||+|||+...+..+..|..+|+.
T Consensus       230 ~~~~i~~D~vv~a~G~~p~~~~~~---~~l~~~--~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~  304 (320)
T 1trb_A          230 NIESLDVAGLFVAIGHSPNTAIFE---GQLELE--NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCM  304 (320)
T ss_dssp             CCEEEECSEEEECSCEEESCGGGT---TTSCEE--TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHH
T ss_pred             ceEEEEcCEEEEEeCCCCChHHhc---cccccc--CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHH
Confidence            346899999999999999998743   467776  78999999 8     899999999999994335788999999999


Q ss_pred             HHHHHh
Q psy3825          85 LAARLY   90 (332)
Q Consensus        85 AA~nI~   90 (332)
                      ||.+|.
T Consensus       305 aa~~i~  310 (320)
T 1trb_A          305 AALDAE  310 (320)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999986

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.17  E-value=4.7e-11  Score=119.61  Aligned_cols=75  Identities=17%  Similarity=0.172  Sum_probs=65.5

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ..++++|.|++++|++||+++|  ++ +++++ ++|+|.||+ +||++|+|||+|||+......+..|+.+|+.||.+++
T Consensus       437 ~~~i~~D~vi~a~G~~pn~~~l--~~-~l~~~-~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~  512 (521)
T 1hyu_A          437 IHSVALAGIFVQIGLLPNTHWL--EG-ALERN-RMGEIIIDAKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF  512 (521)
T ss_dssp             EEEEECSEEEECCCEEESCGGG--TT-TSCBC-TTSCBCCCTTCBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEcCEEEECcCCCCCchHH--hh-hhccC-CCCcEEeCCCCCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHH
Confidence            3579999999999999999884  44 48887 789999999 9999999999999994334678999999999999986

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.17  E-value=8.1e-11  Score=114.50  Aligned_cols=79  Identities=16%  Similarity=0.098  Sum_probs=62.1

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CC-CCCCcEEEecccCC-----------CCCCchh
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQ-TNIPNVFAVGDVLH-----------EKPELTP   76 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lq-TSvpgIYAiGDva~-----------g~~~la~   76 (332)
                      ++++++++|.++|++|.+|+. .+.....++..+ .+|+|.||+ || |+.|||||+|||++           +.+++++
T Consensus       238 g~~~~i~~d~vi~~~G~~~~~-~~~~~~~~l~~~-~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~  315 (430)
T 3hyw_A          238 GNTHEVPAKFTMFMPSFQGPE-VVASAGDKVANP-ANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGM  315 (430)
T ss_dssp             SCEEEEECSEEEEECEEECCH-HHHTTCTTTBCT-TTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHH
T ss_pred             CCceEeecceEEEeccCCCch-HHHhcccccccC-CceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHH
Confidence            346789999999999999984 322122234444 567899999 99 89999999999984           1356788


Q ss_pred             HHHHHHHHHHHHHh
Q psy3825          77 VAVQAGKLLAARLY   90 (332)
Q Consensus        77 vA~~qG~vAA~nI~   90 (332)
                      .|.+||+++|+||.
T Consensus       316 ~A~~qg~~~A~Ni~  329 (430)
T 3hyw_A          316 MIEQMAMAVAHNIV  329 (430)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999997

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.12  E-value=7.5e-11  Score=112.87  Aligned_cols=81  Identities=23%  Similarity=0.234  Sum_probs=68.6

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCcccccccc--CceeecCCCeeecCC-CCC-CCCcEEEecccCC-CCCCchhHHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNA--GVKVIPENAKIDSDN-EQT-NIPNVFAVGDVLH-EKPELTPVAVQ   80 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~a--Gl~ld~e~G~I~VDe-lqT-SvpgIYAiGDva~-g~~~la~vA~~   80 (332)
                      ++.+++++++++|.|++++|.+|+. +  +++.  ++ .+ ++|+|.||+ +|| +.|||||+|||+. +.+.+++.|..
T Consensus       248 ~v~~~~g~~~~~D~vi~a~G~~~~~-~--l~~~~~~l-~~-~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~  322 (409)
T 3h8l_A          248 EIVDEKGNTIPADITILLPPYTGNP-A--LKNSTPDL-VD-DGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVM  322 (409)
T ss_dssp             EEEETTSCEEECSEEEEECCEECCH-H--HHTSCGGG-SC-TTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCCHHHHHH
T ss_pred             eEEECCCCEEeeeEEEECCCCCccH-H--HHhccccC-cC-CCCCEEeCcccccCCCCCEEEeehhccCCCCcHHHHHHH
Confidence            4667788899999999999999984 4  4555  44 34 689999999 999 8999999999984 35788999999


Q ss_pred             HHHHHHHHHhC
Q psy3825          81 AGKLLAARLYG   91 (332)
Q Consensus        81 qG~vAA~nI~G   91 (332)
                      ||++||+||.+
T Consensus       323 q~~~aa~~i~~  333 (409)
T 3h8l_A          323 TGRIAAQHLAN  333 (409)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999974

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.04  E-value=4.3e-10  Score=109.27  Aligned_cols=75  Identities=11%  Similarity=0.075  Sum_probs=63.4

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCC-CCCcEEEecccCCC-----------CCCchhHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQT-NIPNVFAVGDVLHE-----------KPELTPVA   78 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqT-SvpgIYAiGDva~g-----------~~~la~vA   78 (332)
                      ++++++|.+++++|.+|+...  .+..|+ .+ ++|+|.||+ ||| +.|||||+|||+..           .++.++.|
T Consensus       253 ~~~i~~D~vv~~~g~~~~~~~--~~~~gl-~~-~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A  328 (437)
T 3sx6_A          253 EMVLPVKFGMMIPAFKGVPAV--AGVEGL-CN-PGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMI  328 (437)
T ss_dssp             EEEEECSEEEEECCEECCHHH--HTSTTT-BC-TTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHH
T ss_pred             ceEEEEeEEEEcCCCcCchhh--hccccc-cC-CCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHH
Confidence            678999999999999887543  233567 56 789999999 998 99999999999841           25688999


Q ss_pred             HHHHHHHHHHHh
Q psy3825          79 VQAGKLLAARLY   90 (332)
Q Consensus        79 ~~qG~vAA~nI~   90 (332)
                      ..||+++|+||.
T Consensus       329 ~~qg~~aA~ni~  340 (437)
T 3sx6_A          329 ESMVSAAVHNIK  340 (437)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999997

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.99  E-value=3.9e-10  Score=112.03  Aligned_cols=79  Identities=19%  Similarity=0.191  Sum_probs=67.3

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCce--eecCCCeee-cCC-CCCCCCcEEEecccCCCCCCchhHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVK--VIPENAKID-SDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAG   82 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~--ld~e~G~I~-VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG   82 (332)
                      +.+++++++++|.|++|+|++||+++  ++.+|++  ++ ++|+|. ||+ ++ +.|+|||+|||+ + ..++..|..||
T Consensus       292 v~~~~g~~i~aD~Vv~a~G~~p~~~l--~~~~g~~~~~~-~~g~i~~vd~~~~-s~~~vya~GD~~-~-~~~~~~A~~~g  365 (493)
T 1y56_A          292 VIDMNNHEYKVDALIFADGRRPDINP--ITQAGGKLRFR-RGYYSPVLDEYHR-IKDGIYVAGSAV-S-IKPHYANYLEG  365 (493)
T ss_dssp             EEETTCCEEECSEEEECCCEEECCHH--HHHTTCCEEEE-TTEEEECCCTTSE-EETTEEECSTTT-C-CCCHHHHHHHH
T ss_pred             EEeCCCeEEEeCEEEECCCcCcCchH--HHhcCCCcccc-CCceeeccccccC-cCCCEEEEeccC-C-ccCHHHHHHHH
Confidence            45567789999999999999999987  4566655  46 588887 899 99 999999999998 3 46789999999


Q ss_pred             HHHHHHHhC
Q psy3825          83 KLLAARLYG   91 (332)
Q Consensus        83 ~vAA~nI~G   91 (332)
                      ++||.+|.+
T Consensus       366 ~~aa~~i~~  374 (493)
T 1y56_A          366 KLVGAYILK  374 (493)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999986

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.93  E-value=5e-10  Score=110.90  Aligned_cols=73  Identities=14%  Similarity=0.121  Sum_probs=62.2

Q ss_pred             eeEEEcCEEEEccCccccCccccccccCc-eeecCCCeeecCC-CCCC-CCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRALTEETAVSNAGV-KVIPENAKIDSDN-EQTN-IPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PNt~~L~Le~aGl-~ld~e~G~I~VDe-lqTS-vpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      .+++++|.||+|+|++||+  +    .|+ +++ ++|+|.||+ +||+ +|+|||+|||+.+...++..|+.+|+.+|.+
T Consensus       317 ~~~i~~d~Vi~a~G~~p~~--l----~gl~~~d-~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~  389 (460)
T 1cjc_A          317 VEDLPCGLVLSSIGYKSRP--I----DPSVPFD-PKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQI  389 (460)
T ss_dssp             EEEEECSEEEECCCEECCC--C----CTTSCCB-TTTTBCCEETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEcCEEEECCCCCCCC--C----CCCcccc-cCCCeeECCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHH
Confidence            3689999999999999998  2    367 888 778899999 9998 7999999999843334577999999999999


Q ss_pred             HhC
Q psy3825          89 LYG   91 (332)
Q Consensus        89 I~G   91 (332)
                      |.+
T Consensus       390 i~~  392 (460)
T 1cjc_A          390 LLQ  392 (460)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            975

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.90  E-value=2.8e-09  Score=105.15  Aligned_cols=83  Identities=8%  Similarity=-0.045  Sum_probs=68.4

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC---C-CCCCCCcEEEecccCCCCCCchhHHHHH
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD---N-EQTNIPNVFAVGDVLHEKPELTPVAVQA   81 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD---e-lqTSvpgIYAiGDva~g~~~la~vA~~q   81 (332)
                      ++.+.+|+++++|.||+|+|++||+++|. +++|++++ ++|+| +|   . ++|+.|+|||+||+. . ....+.|..|
T Consensus       254 ~V~~~dG~~i~~D~Vi~atG~~p~~~~l~-~~~gl~~~-~~~~v-~~~~~~~~~t~~p~i~aiGd~~-~-~~~~~~a~~q  328 (464)
T 2xve_A          254 NAYFADGSSEKVDAIILCTGYIHHFPFLN-DDLRLVTN-NRLWP-LNLYKGVVWEDNPKFFYIGMQD-Q-WYSFNMFDAQ  328 (464)
T ss_dssp             EEEETTSCEEECSEEEECCCBCCCCTTBC-TTTCCCCC-SSSCC-SSEETTTEESSSTTEEECSCSC-C-SSCHHHHHHH
T ss_pred             EEEECCCCEEeCCEEEECCCCCCCCCCcC-cccccccC-CCccc-ccccceEecCCCCCEEEEeCcc-c-ccchHHHHHH
Confidence            46777888999999999999999999865 34788886 55555 44   3 579999999999998 3 4578999999


Q ss_pred             HHHHHHHHhCCC
Q psy3825          82 GKLLAARLYGNG   93 (332)
Q Consensus        82 G~vAA~nI~G~~   93 (332)
                      |+.+|+++.|..
T Consensus       329 a~~~a~~l~G~~  340 (464)
T 2xve_A          329 AWYARDVIMGRL  340 (464)
T ss_dssp             HHHHHHHHTTSS
T ss_pred             HHHHHHHHcCCC
Confidence            999999999853

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.89  E-value=6.6e-10  Score=103.15  Aligned_cols=82  Identities=20%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             eecCCeeEEE-cCEEEEccCccccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCC-C--CchhHHHH
Q psy3825           7 ASMDKVFEDT-YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEK-P--ELTPVAVQ   80 (332)
Q Consensus         7 v~~~dg~~I~-aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~-~--~la~vA~~   80 (332)
                      +.+.+|+++. +|.||+|+|++||++++  .+.+++ + ++|+|.||+  ++|+.|+|||+|||+... .  ..+..|.+
T Consensus       250 v~~~~g~~~~~~d~vi~a~G~~~~~~~~--~~~~~~-~-~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~  325 (369)
T 3d1c_A          250 ISFDSGQSVHTPHEPILATGFDATKNPI--VQQLFV-T-TNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRA  325 (369)
T ss_dssp             EEESSSCCEEESSCCEECCCBCGGGSHH--HHHHSC-C-TTSCCCBCTTSBBSSSTTEEECSTTCCCSSCCCCSHHHHGG
T ss_pred             EEecCCeEeccCCceEEeeccCCccchh--hhhhcc-C-CCCCEEechhhcccCCCCeEEeccccccCCeeEEEEehhhH
Confidence            4455666665 59999999999999874  344566 6 689999998  678999999999998421 1  22456778


Q ss_pred             HHHHHHHHHhCC
Q psy3825          81 AGKLLAARLYGN   92 (332)
Q Consensus        81 qG~vAA~nI~G~   92 (332)
                      ||+.+|++|.|.
T Consensus       326 ~a~~~a~~l~~~  337 (369)
T 3d1c_A          326 RFAVLAHLLTQR  337 (369)
T ss_dssp             GHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc
Confidence            999999999874

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.85  E-value=1.5e-09  Score=107.48  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=61.5

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CC-CCCCcEEEecccCCCCCC-chhHHHHHHHHHHHHH
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQ-TNIPNVFAVGDVLHEKPE-LTPVAVQAGKLLAARL   89 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lq-TSvpgIYAiGDva~g~~~-la~vA~~qG~vAA~nI   89 (332)
                      +++++|.||+|+|++|++  +    .|+.++ ++|+|.||+ +| |++|+|||+|||+. ++. ++..|..+|..+|.+|
T Consensus       311 ~~i~~d~vi~a~G~~p~~--l----~gl~~d-~~g~i~vn~~~rvt~~pgvya~GD~~~-gp~~~i~~a~~~g~~~a~~i  382 (456)
T 1lqt_A          311 EELPAQLVVRSVGYRGVP--T----PGLPFD-DQSGTIPNVGGRINGSPNEYVVGWIKR-GPTGVIGTNKKDAQDTVDTL  382 (456)
T ss_dssp             EEEECSEEEECSCEECCC--C----TTSCCB-TTTTBCCEETTEETTCSSEEECTHHHH-CSCSCTTHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEEccccccCC--C----CCCccc-CCCCeeECCCCcCCCCCCEEEEeccCC-CCchhHHHHHHHHHHHHHHH
Confidence            579999999999999998  2    367787 778899999 99 89999999999984 444 5778999999999999


Q ss_pred             hC
Q psy3825          90 YG   91 (332)
Q Consensus        90 ~G   91 (332)
                      ++
T Consensus       383 ~~  384 (456)
T 1lqt_A          383 IK  384 (456)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.58  E-value=5.7e-08  Score=94.39  Aligned_cols=84  Identities=15%  Similarity=0.120  Sum_probs=63.8

Q ss_pred             eeecCCeeE-EEcCEEEEccCccccCcccc---ccccCceeecCCCeeecCC-CC---CCCCcEEEecccCCCCCCchhH
Q psy3825           6 GASMDKVFE-DTYDTVLMAIGRRALTEETA---VSNAGVKVIPENAKIDSDN-EQ---TNIPNVFAVGDVLHEKPELTPV   77 (332)
Q Consensus         6 ~v~~~dg~~-I~aD~VLvAtGr~PNt~~L~---Le~aGl~ld~e~G~I~VDe-lq---TSvpgIYAiGDva~g~~~la~v   77 (332)
                      ++.+.+|++ +++|.||+|+|++||+++|+   |+.++..+. .++.+.+|. .+   |+.|+||++||+. .. .+++.
T Consensus       269 ~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~-~~~~~~~~~~~~v~~~~~p~l~~~G~~~-~~-~~~~~  345 (447)
T 2gv8_A          269 EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLI-DDGSHVHNVYQHIFYIPDPTLAFVGLAL-HV-VPFPT  345 (447)
T ss_dssp             EEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCC-SSSSSCCSEETTTEETTCTTEEESSCCB-SS-CHHHH
T ss_pred             EEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCcee-cCCCcccccccccccCCCCcEEEEeccc-cc-cCchH
Confidence            466677776 78999999999999999833   333322222 235566665 55   7899999999998 33 47899


Q ss_pred             HHHHHHHHHHHHhCC
Q psy3825          78 AVQAGKLLAARLYGN   92 (332)
Q Consensus        78 A~~qG~vAA~nI~G~   92 (332)
                      |..||+.+|.++.|.
T Consensus       346 a~~qa~~~a~~~~g~  360 (447)
T 2gv8_A          346 SQAQAAFLARVWSGR  360 (447)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999999984

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.58  E-value=3.3e-08  Score=106.51  Aligned_cols=68  Identities=16%  Similarity=0.155  Sum_probs=57.3

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CC-----CCCCcEEEecccCCCCCCchhHHHHHHHHHH
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQ-----TNIPNVFAVGDVLHEKPELTPVAVQAGKLLA   86 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lq-----TSvpgIYAiGDva~g~~~la~vA~~qG~vAA   86 (332)
                      +++++|.|++|+|++||++++.  .       .+|.|.||+ ++     |++|+|||+|||+ +.+.+. .|..||++||
T Consensus       368 ~~i~~D~Vv~a~G~~P~~~l~~--~-------~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a-~~~~l~-~A~~~G~~aA  436 (965)
T 2gag_A          368 QRFEADVLAVAGGFNPVVHLHS--Q-------RQGKLDWDTTIHAFVPADAVANQHLAGAMT-GRLDTA-SALSTGAATG  436 (965)
T ss_dssp             EEEECSEEEEECCEEECCHHHH--H-------TTCCEEEETTTTEEEECSCCTTEEECGGGG-TCCSHH-HHHHHHHHHH
T ss_pred             EEEEcCEEEECCCcCcChHHHH--h-------CCCcEEEcCcccccccCCCCCCEEEEEecC-CchhHH-HHHHHHHHHH
Confidence            6899999999999999998742  2       245688888 77     8999999999999 666555 8999999999


Q ss_pred             HHHhC
Q psy3825          87 ARLYG   91 (332)
Q Consensus        87 ~nI~G   91 (332)
                      .+|.+
T Consensus       437 ~~i~~  441 (965)
T 2gag_A          437 AAAAT  441 (965)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.38  E-value=1.2e-07  Score=98.88  Aligned_cols=74  Identities=15%  Similarity=0.228  Sum_probs=58.5

Q ss_pred             EEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhCC
Q psy3825          14 EDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGN   92 (332)
Q Consensus        14 ~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G~   92 (332)
                      ++++|.||+|+|++||++++  +++    .     ..||+ +||++|+|||+|||+ + +..+..|+.||+.||.+|.+.
T Consensus       632 ~i~aD~Vv~a~G~~p~~~l~--~~l----~-----~~vd~~~~t~~~~VyAiGD~~-~-~~~~~~A~~~G~~aA~~i~~~  698 (729)
T 1o94_A          632 WIEFDSLVLVTGRHSECTLW--NEL----K-----ARESEWAENDIKGIYLIGDAE-A-PRLIADATFTGHRVAREIEEA  698 (729)
T ss_dssp             EEECSEEEEESCEEECCHHH--HHH----H-----HTGGGTGGGTCCEEEECGGGT-S-CCCHHHHHHHHHHHHHTTTSS
T ss_pred             eeeCCEEEECCCCCCChHHH--HHH----h-----hhcccccccCCCCeEEEeCcc-c-hhhHHHHHHHHHHHHHHhhhh
Confidence            49999999999999999863  322    2     13688 999999999999998 4 566788999999999999763


Q ss_pred             CCcccccccceE
Q psy3825          93 GTTQMDYQNVAT  104 (332)
Q Consensus        93 ~~~~~~y~~vP~  104 (332)
                          +.+..+|+
T Consensus       699 ----l~~~~~p~  706 (729)
T 1o94_A          699 ----NPQIAIPY  706 (729)
T ss_dssp             ----CTTSCCCC
T ss_pred             ----cccCCCCe
Confidence                33445554

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.23  E-value=1.4e-06  Score=84.12  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=53.2

Q ss_pred             CeeEEEcCEEEEccCcccc--CccccccccCceeecCCCeeecCC-CCCC-----CCcEEEecccCC----CCCCchhHH
Q psy3825          11 KVFEDTYDTVLMAIGRRAL--TEETAVSNAGVKVIPENAKIDSDN-EQTN-----IPNVFAVGDVLH----EKPELTPVA   78 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PN--t~~L~Le~aGl~ld~e~G~I~VDe-lqTS-----vpgIYAiGDva~----g~~~la~vA   78 (332)
                      +..++++|.||+|+|.+||  .++  |+..+.  .  .|+|.||+ ++++     .|+|||+|||..    ..+.+...|
T Consensus       360 ~~~~~~~D~Vv~AtG~~p~~~~~~--l~~l~~--~--~g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a  433 (463)
T 3s5w_A          360 ELSVETYDAVILATGYERQLHRQL--LEPLAE--Y--LGDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLSDTLLSVLP  433 (463)
T ss_dssp             CEEEEEESEEEECCCEECCC-CTT--TGGGGG--G--BC--CCCTTSBCCBCTTBCSEEEESSCCHHHHCTTTTSSTTHH
T ss_pred             CeEEEECCEEEEeeCCCCCCccch--hHHHHH--H--hCCcccCcccccccCCCCCCeEEEcCCCcccCCcCccchhHHH
Confidence            3446999999999999999  555  333322  1  17799999 8864     567999999974    245677788


Q ss_pred             HHHHHHHHHHHh
Q psy3825          79 VQAGKLLAARLY   90 (332)
Q Consensus        79 ~~qG~vAA~nI~   90 (332)
                      .+++++++..+-
T Consensus       434 ~r~~~i~~~~~~  445 (463)
T 3s5w_A          434 VRAEEISGSLYQ  445 (463)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999988866653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.18  E-value=7.6e-07  Score=92.02  Aligned_cols=69  Identities=22%  Similarity=0.179  Sum_probs=54.4

Q ss_pred             cCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCCCCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDelqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      +++++++++|.||+|+|++||++++  +.++.     .+.      +|+.|+|||+|||+ + +..+..|+.||+.||.+
T Consensus       605 ~~~~~~i~aD~VV~A~G~~p~~~l~--~~l~~-----~~~------~t~~~~VyaiGD~~-~-~~~~~~A~~~g~~aa~~  669 (690)
T 3k30_A          605 ASIERELECDAVVMVTARLPREELY--LDLVA-----RRD------AGEIASVRGIGDAW-A-PGTIAAAVWSGRRAAEE  669 (690)
T ss_dssp             TCCEEEEECSEEEEESCEEECCHHH--HHHHH-----HHH------HTSCSEEEECGGGT-S-CBCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCEEEECCCCCCChHHH--HHHhh-----hhc------ccCCCCEEEEeCCC-c-hhhHHHHHHHHHHHHHH
Confidence            3467789999999999999999863  33221     221      58899999999998 4 45566799999999999


Q ss_pred             HhCC
Q psy3825          89 LYGN   92 (332)
Q Consensus        89 I~G~   92 (332)
                      |.+.
T Consensus       670 i~~~  673 (690)
T 3k30_A          670 FDAV  673 (690)
T ss_dssp             TTCC
T ss_pred             HHhh
Confidence            9864

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.03  E-value=5e-06  Score=74.00  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=29.9

Q ss_pred             CCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          56 TNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        56 TSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      |++|+|||+|||+ . ......|+.||+.+|.+|..
T Consensus       196 t~~p~iya~G~~a-~-~g~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          196 KRLEGLYAVGLCV-R-EGDYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             TTSBSEEECGGGT-S-CCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccceeeeecc-c-CccHHHHHHHHHHHHHHHHh
Confidence            7999999999999 4 44778899999999999964

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.73  E-value=7e-06  Score=81.23  Aligned_cols=69  Identities=19%  Similarity=0.263  Sum_probs=49.6

Q ss_pred             cCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCC----CCchhHHHHHHHHHHHHH
Q psy3825          17 YDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEK----PELTPVAVQAGKLLAARL   89 (332)
Q Consensus        17 aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~----~~la~vA~~qG~vAA~nI   89 (332)
                      .|.++++.|+.|+ +.+.+.....  . ..|.|.||+ +||++|||||+|||+...    ..+++.|..+|.+.+..+
T Consensus       291 ~~~~~~~~G~dp~-~~i~v~p~~~--~-~~GGI~vd~~~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a  364 (472)
T 2e5v_A          291 VAKYLARHGHNYK-VKIPIFPAAH--F-VDGGIRVNIRGESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINL  364 (472)
T ss_dssp             HHHHHHHTTCCTT-SCEECEEEEE--E-ESCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHG
T ss_pred             HHHHHHHhCcCcc-cceEeehhhc--e-eCCCeEECCCCccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHH
Confidence            3667888999999 7654333222  2 368899999 999999999999998412    267787877755555444

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.54  E-value=5e-05  Score=78.12  Aligned_cols=59  Identities=17%  Similarity=0.138  Sum_probs=46.8

Q ss_pred             eEEEcCEEEEccCccccCccccccccCceeecCCCeeecCCCCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHH
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARL   89 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDelqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI   89 (332)
                      +++++|.||+|+|++||++++  +.    ++ ..           .++|||+|||+...+..+..|++||..+|.||
T Consensus       613 ~~i~~D~Vi~a~G~~p~~~l~--~~----l~-~~-----------g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          613 QVLAVDNVVICAGQEPNRALA--QP----LI-DS-----------GKTVHLIGGCDVAMELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             EEECCSEEEECCCEEECCTTH--HH----HH-TT-----------TCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred             EEEeCCEEEECCCccccHHHH--HH----HH-hc-----------CCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence            689999999999999999873  21    12 12           26899999998534456899999999999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.11  E-value=0.00037  Score=69.77  Aligned_cols=82  Identities=16%  Similarity=0.148  Sum_probs=58.1

Q ss_pred             ceeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC------C----CC-CCCCcEEEe-cccCC-CC
Q psy3825           5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD------N----EQ-TNIPNVFAV-GDVLH-EK   71 (332)
Q Consensus         5 ~~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD------e----lq-TSvpgIYAi-GDva~-g~   71 (332)
                      +++.+++ +++++|.||+|||.+++++.+  ...+|. . .+|.+.++      .    +. ...||+|++ ||.+. +.
T Consensus       369 ~gv~~~d-~~~~~D~ii~atG~~~~~~~~--~~~~i~-g-~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~  443 (542)
T 1w4x_A          369 RGVRTSE-REYELDSLVLATGFDALTGAL--FKIDIR-G-VGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSAL  443 (542)
T ss_dssp             SEEEESS-CEEECSEEEECCCCCCTTHHH--HTSEEE-C-GGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGG
T ss_pred             CeEEeCC-eEEecCEEEEcCCccccccCc--CceeeE-C-CCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCccc
Confidence            4677778 899999999999999998763  333332 1 34544332      1    22 257999998 99852 34


Q ss_pred             CCchhHHHHHHHHHHHHHhC
Q psy3825          72 PELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        72 ~~la~vA~~qG~vAA~nI~G   91 (332)
                      ...+..|..|++.++++|..
T Consensus       444 ~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          444 SNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            55678899999999999863

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.44  E-value=0.0033  Score=63.37  Aligned_cols=80  Identities=16%  Similarity=0.209  Sum_probs=55.8

Q ss_pred             ceeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecC----------C-CC-CCCCcEEEe-cccCCCC
Q psy3825           5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSD----------N-EQ-TNIPNVFAV-GDVLHEK   71 (332)
Q Consensus         5 ~~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VD----------e-lq-TSvpgIYAi-GDva~g~   71 (332)
                      +++.+++|+++++|+||+|||.++++.++  ..  +.+. .++.+.++          . +. .+.||+|++ |..+ ..
T Consensus       361 ~gv~~~dG~~~~~DvIV~ATGf~~~~~~~--~~--~~i~-g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~-~~  434 (540)
T 3gwf_A          361 KGVVTEDGVLHELDVLVFATGFDAVDGNY--RR--IEIR-GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNG-PF  434 (540)
T ss_dssp             SEEEETTCCEEECSEEEECCCBSCSSHHH--HT--SEEE-CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSC-BC
T ss_pred             CeEEcCCCCEEECCEEEECCccCccccCc--Cc--ceEE-CCCCcCHHHhhccChhhccccccCCCCceEEEecCCC-CC
Confidence            46788899999999999999999998553  22  2232 22223333          2 22 268999999 8765 34


Q ss_pred             CCchhHHHHHHHHHHHHHh
Q psy3825          72 PELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        72 ~~la~vA~~qG~vAA~nI~   90 (332)
                      ......+..|++.+++.|.
T Consensus       435 ~s~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          435 TNLPPSIETQVEWISDTIG  453 (540)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence            4566788889998888774

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.03  E-value=0.0018  Score=61.45  Aligned_cols=60  Identities=12%  Similarity=-0.045  Sum_probs=47.8

Q ss_pred             eecCCeeEEEcCEEEEccC--------ccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccC
Q psy3825           7 ASMDKVFEDTYDTVLMAIG--------RRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVL   68 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtG--------r~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva   68 (332)
                      +.+.+++++++|.||+|+|        +.|++..+.++..+....  ...++|+. ++|+.++||+.||+.
T Consensus       238 v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~--~~~~kv~~~~~~~~~~i~~~~d~~  306 (431)
T 3k7m_X          238 VTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHG--GQGLKILIHVRGAEAGIECVGDGI  306 (431)
T ss_dssp             EEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCC--CCEEEEEEEEESCCTTEEEEBSSS
T ss_pred             EEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCC--cceEEEEEEECCCCcCceEcCCCC
Confidence            4456677899999999999        999998766665544332  34599999 999999999999986

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=95.64  E-value=0.0036  Score=57.18  Aligned_cols=78  Identities=15%  Similarity=0.125  Sum_probs=50.4

Q ss_pred             eEEEcCEEEEccCccccCccccccc---cC--ceeecCCCeeecC--------CCCCCCCcEEEecccCC---CCC---C
Q psy3825          13 FEDTYDTVLMAIGRRALTEETAVSN---AG--VKVIPENAKIDSD--------NEQTNIPNVFAVGDVLH---EKP---E   73 (332)
Q Consensus        13 ~~I~aD~VLvAtGr~PNt~~L~Le~---aG--l~ld~e~G~I~VD--------elqTSvpgIYAiGDva~---g~~---~   73 (332)
                      .++++|.||+|+|..++...+....   .+  +.+.+.+| +.+|        ..+|+.|+||++||++.   +.+   +
T Consensus       176 ~~i~ad~VV~AtG~~s~~~~~~~~~~~~~g~~~~v~~~~g-~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp  254 (284)
T 1rp0_A          176 NVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKA-LDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP  254 (284)
T ss_dssp             EEEEEEEEEECCCSSSTTTTHHHHHHHHTTSSSCCCCCEE-ECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCS
T ss_pred             EEEECCEEEECCCCchHHHHHHHHHhhhccCCCCcCCcCC-chhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcCh
Confidence            6799999999999888764321111   11  11111222 4333        24567899999999873   222   2


Q ss_pred             chhHHHHHHHHHHHHHhC
Q psy3825          74 LTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        74 la~vA~~qG~vAA~nI~G   91 (332)
                      ....|..+|+.+|.++..
T Consensus       255 ~~~~~~~sG~~~a~~i~~  272 (284)
T 1rp0_A          255 TFGAMMISGQKAGQLALK  272 (284)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHH
Confidence            355778999999999874

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.0019  Score=59.70  Aligned_cols=44  Identities=9%  Similarity=0.080  Sum_probs=32.9

Q ss_pred             CeeecCC-CCCCCCcEEEecccCC---CCC---CchhHHHHHHHHHHHHHh
Q psy3825          47 AKIDSDN-EQTNIPNVFAVGDVLH---EKP---ELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        47 G~I~VDe-lqTSvpgIYAiGDva~---g~~---~la~vA~~qG~vAA~nI~   90 (332)
                      +.|.+|+ ++|++|||||+||++.   +.+   +....++..|+.||+.|.
T Consensus       271 ~~iv~~~~~~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~  321 (326)
T 3fpz_A          271 HDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQIL  321 (326)
T ss_dssp             HHHHHHCEECTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHH
T ss_pred             CeEEECCCeEECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHH
Confidence            5588888 9999999999999874   111   122345678999999885

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.28  E-value=0.029  Score=56.61  Aligned_cols=80  Identities=11%  Similarity=0.115  Sum_probs=54.1

Q ss_pred             ceeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-C-----------CCCCCcEEEecccCC--C
Q psy3825           5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-E-----------QTNIPNVFAVGDVLH--E   70 (332)
Q Consensus         5 ~~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-l-----------qTSvpgIYAiGDva~--g   70 (332)
                      +++.+++| ++++|.||+|||..+++..+  .  ++++. .++.+.+++ .           -.+.||+|.+.--.+  +
T Consensus       369 ~gv~~~dG-~~~~D~IV~ATGf~~~~~~~--~--~~~i~-g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~  442 (545)
T 3uox_A          369 EGIKTADA-AYDLDVIIYATGFDAVTGSL--D--RIDIR-GKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGST  442 (545)
T ss_dssp             TEEEESSC-EEECSEEEECCCCBSSSCSC--T--TSEEE-CGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGG
T ss_pred             CeEEeCCC-eeecCEEEECCccccccccC--C--CceEE-CCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCc
Confidence            46788889 99999999999999987763  2  34443 233344442 1           126899999854321  1


Q ss_pred             CCCchhHHHHHHHHHHHHHh
Q psy3825          71 KPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        71 ~~~la~vA~~qG~vAA~nI~   90 (332)
                      .......+..|++.+++.|.
T Consensus       443 ~~s~~~~~e~~~~~i~~~i~  462 (545)
T 3uox_A          443 FCNVGVCGGLQAEWVLRMIS  462 (545)
T ss_dssp             GSCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHH
Confidence            23456777889999888774

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=95.09  E-value=0.023  Score=56.45  Aligned_cols=84  Identities=15%  Similarity=0.228  Sum_probs=51.6

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCcc--ccccccCceeecCCCeeecCC-CC--C------CCCcEEEecccCC----C
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEE--TAVSNAGVKVIPENAKIDSDN-EQ--T------NIPNVFAVGDVLH----E   70 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~--L~Le~aGl~ld~e~G~I~VDe-lq--T------SvpgIYAiGDva~----g   70 (332)
                      ++.+++++++++|.||+|||.+|+...  +.+. ..+..+ ++|...|+. .+  +      ..++||+.|=+-.    +
T Consensus       387 ~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~-~~l~~d-~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~  464 (501)
T 4b63_A          387 GAANDVKETLEVDALMVATGYNRNAHERLLSKV-QHLRPT-GQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLS  464 (501)
T ss_dssp             -----CCCEEEESEEEECCCEECCTHHHHTGGG-GGGSST-TCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTT
T ss_pred             eeEeCCCeEEECCEEEECcCCCCCCcchhcchh-hhcCcC-cCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCCcc
Confidence            456778899999999999999988632  1111 135555 567777776 43  2      2467999984321    2


Q ss_pred             CCCchhHHHHHHHHHHHHHhCC
Q psy3825          71 KPELTPVAVQAGKLLAARLYGN   92 (332)
Q Consensus        71 ~~~la~vA~~qG~vAA~nI~G~   92 (332)
                      .+.|.-.|.+.|+++ +.|+|.
T Consensus       465 ~~~Ls~~a~R~~~I~-~~l~g~  485 (501)
T 4b63_A          465 DSLLSVLAVRGGEMV-QSIFGE  485 (501)
T ss_dssp             TTSSTTHHHHHHHHH-HHHHHH
T ss_pred             hhhHHHHHHHHHHHH-HHHhcc
Confidence            355666788877654 556664

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=94.52  E-value=0.028  Score=57.45  Aligned_cols=45  Identities=27%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCC----CCCCchhH----HHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLH----EKPELTPV----AVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~----g~~~la~v----A~~qG~vAA~nI~   90 (332)
                      -|.|.||. +||++||+||+|+|+.    |...+...    +.-.|++|++++.
T Consensus       359 ~GGi~vd~~~~~~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa  412 (602)
T 1kf6_A          359 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQAT  412 (602)
T ss_dssp             CCEEECCTTSBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEECCCCccccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            57799999 9999999999999973    12233333    4445888887775

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.35  E-value=0.056  Score=54.51  Aligned_cols=80  Identities=14%  Similarity=0.143  Sum_probs=53.0

Q ss_pred             ceeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-C----------C-CCCCcEEEecccCC--C
Q psy3825           5 TGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-E----------Q-TNIPNVFAVGDVLH--E   70 (332)
Q Consensus         5 ~~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-l----------q-TSvpgIYAiGDva~--g   70 (332)
                      +++.+++| ++++|.||+|||.++++..+  ..  +.+. .++.+.+++ .          . ...||.|.+.--.+  +
T Consensus       374 ~gv~~~dG-~~~~D~iI~ATGf~~~~~~~--~~--~~i~-g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~  447 (549)
T 4ap3_A          374 TGIVTTGA-HYDLDMIVLATGFDAMTGSL--DK--LEIV-GRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSV  447 (549)
T ss_dssp             TEEEESSC-EEECSEEEECCCEEESSTTG--GG--SEEE-CGGGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGG
T ss_pred             CcEEeCCC-ceecCEEEECCccccccccc--Cc--eeEE-CCCCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCc
Confidence            46788888 99999999999999998653  22  3333 233355542 2          1 25899999743221  1


Q ss_pred             CCCchhHHHHHHHHHHHHHh
Q psy3825          71 KPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        71 ~~~la~vA~~qG~vAA~nI~   90 (332)
                      .......+..|++.+++.|.
T Consensus       448 ~~s~~~~~e~~~~~i~~~i~  467 (549)
T 4ap3_A          448 LANMVLHSELHVDWVADAIA  467 (549)
T ss_dssp             GSCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHH
Confidence            23455677788888888774

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=92.65  E-value=0.086  Score=54.79  Aligned_cols=38  Identities=8%  Similarity=0.249  Sum_probs=28.5

Q ss_pred             C-CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHHh
Q psy3825          53 N-EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        53 e-lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI~   90 (332)
                      . ++|++||+||+|||+. +.......+..+|++++.++.
T Consensus       446 ~~~~t~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~  485 (662)
T 3gyx_A          446 YNRMTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMV  485 (662)
T ss_dssp             CTTBCSSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCccCCeEeCccccccccCccHhHHHHHHHHHHHHHH
Confidence            7 8999999999999983 222336677777888777664

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.60  E-value=0.088  Score=42.95  Aligned_cols=36  Identities=19%  Similarity=0.100  Sum_probs=30.1

Q ss_pred             CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhC
Q psy3825          54 EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        54 lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G   91 (332)
                      ++++.++||++||++. +. -++.|+..|+.||+.|..
T Consensus       290 ~~~~~~~v~l~GDa~~-g~-gv~~A~~sG~~aA~~I~~  325 (336)
T 3kkj_A          290 LSDADLGIYVCGDWCL-SG-RVEGAWLSGQEAARRLLE  325 (336)
T ss_dssp             EEETTTTEEECCGGGT-TS-SHHHHHHHHHHHHHHHHH
T ss_pred             eeeCCCCEEEEecccC-Cc-CHHHHHHHHHHHHHHHHH
Confidence            5678899999999983 33 488999999999999873

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=92.50  E-value=0.1  Score=52.44  Aligned_cols=46  Identities=15%  Similarity=0.244  Sum_probs=34.2

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCC-C---CCCchh----HHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLH-E---KPELTP----VAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~-g---~~~la~----vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||. .||++||+||+|+|+. +   ...+..    .|.-.|++|++++..
T Consensus       354 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~  408 (540)
T 1chu_A          354 CGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITR  408 (540)
T ss_dssp             SCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcEEECCCCCCccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHH
Confidence            47899999 9999999999999973 2   223333    345568888888764

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=92.02  E-value=0.092  Score=53.45  Aligned_cols=42  Identities=17%  Similarity=0.084  Sum_probs=35.7

Q ss_pred             eeecCC-CCC-CCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          48 KIDSDN-EQT-NIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        48 ~I~VDe-lqT-SvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      +|.+|+ ||| +++|+|++||.+ |...-...|..+|..+|+.|+
T Consensus       496 ri~~~~~~~~~~~~gly~~Gega-G~a~gi~~Aa~~G~~~a~~i~  539 (549)
T 3nlc_A          496 CIKRGKDFQSVNLKGFYPAGEGA-GYAGGILSAGIDGIKVAEAVA  539 (549)
T ss_dssp             ECCCTTTTSCTTCBTEEECHHHH-TSCCSHHHHHHHHHHHHHHHH
T ss_pred             eEEECCCceECCcCCEEEccccC-ChhhHHHHHHHHHHHHHHHHH
Confidence            378899 998 899999999998 766667778888988888876

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=91.66  E-value=0.14  Score=53.16  Aligned_cols=45  Identities=20%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CCeeecCC-CCCCCCcEEEecccCC----CCCCchh----HHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQTNIPNVFAVGDVLH----EKPELTP----VAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqTSvpgIYAiGDva~----g~~~la~----vA~~qG~vAA~nI~   90 (332)
                      -|+|.||. .||++||+||+|+|+.    |...+..    .++-.|++|+.++.
T Consensus       372 ~GGi~vd~~~~v~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa  425 (660)
T 2bs2_A          372 MGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFA  425 (660)
T ss_dssp             CCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEECCCCceecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            57899999 9999999999999852    1122333    23455777777764

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=90.68  E-value=0.23  Score=50.95  Aligned_cols=37  Identities=19%  Similarity=0.358  Sum_probs=27.8

Q ss_pred             CCCCCCcEEEecccCCC-CCCchhHHHHHHHHHHHHHh
Q psy3825          54 EQTNIPNVFAVGDVLHE-KPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        54 lqTSvpgIYAiGDva~g-~~~la~vA~~qG~vAA~nI~   90 (332)
                      .+|++||+||+|+|+.+ ...+...+..+|+++++++.
T Consensus       427 ~~t~I~GLyAaGe~a~~~~~r~~~~sl~~G~~ag~~aa  464 (643)
T 1jnr_A          427 RMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAV  464 (643)
T ss_dssp             TBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCceeCCEEeeeccccccccccchhHHHHHHHHHHHHH
Confidence            56899999999999842 23355667778888877765

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=87.41  E-value=0.34  Score=48.47  Aligned_cols=46  Identities=17%  Similarity=0.217  Sum_probs=32.6

Q ss_pred             CCeeecCC-CC------CCCCcEEEecccCCCC---CCch----hHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQ------TNIPNVFAVGDVLHEK---PELT----PVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lq------TSvpgIYAiGDva~g~---~~la----~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||+ +|      |.+||+||+|+++.+.   ..+.    ..|+-.|++|++++..
T Consensus       502 ~GGl~vd~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~  561 (566)
T 1qo8_A          502 MGGVAINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAK  561 (566)
T ss_dssp             CCEECBCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccEEECCCCeEECCCCCEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence            46788988 87      6899999999998421   1122    2455667888888753

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=85.39  E-value=0.32  Score=49.41  Aligned_cols=45  Identities=24%  Similarity=0.308  Sum_probs=31.2

Q ss_pred             CCeeecCC-CCC----------CCCcEEEecccCC-C---CCCchh----HHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQT----------NIPNVFAVGDVLH-E---KPELTP----VAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lqT----------SvpgIYAiGDva~-g---~~~la~----vA~~qG~vAA~nI~   90 (332)
                      -|+|.||. .||          ++||+||+|+|+. +   ...+..    .+.-.|++|++++.
T Consensus       357 ~GGi~vd~~~~vl~~~~~~~g~~I~GLyAaGe~a~~g~hG~nrl~gnsl~~~~vfG~~Ag~~aa  420 (588)
T 2wdq_A          357 MGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQ  420 (588)
T ss_dssp             CCBEEBCTTCEEEEECTTSCEEEEEEEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHTHH
T ss_pred             CceEEECCCCCCcccccccCCCeeCCceeCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence            46799999 888          7999999999863 1   122232    34455777777765

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=83.47  E-value=0.54  Score=46.98  Aligned_cols=46  Identities=17%  Similarity=0.269  Sum_probs=32.6

Q ss_pred             CCeeecCC-CC------CCCCcEEEecccCCC---CCCch----hHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQ------TNIPNVFAVGDVLHE---KPELT----PVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lq------TSvpgIYAiGDva~g---~~~la----~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||+ +|      |.+||+||+|.++.+   ...+.    ..|+-.|++|++++..
T Consensus       507 ~GGl~id~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~  566 (571)
T 1y0p_A          507 MGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAK  566 (571)
T ss_dssp             CCEEEBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeEECCCceEECCCCCCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHH
Confidence            46788888 77      689999999999732   11122    2456678999888763

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=82.44  E-value=0.64  Score=46.78  Aligned_cols=46  Identities=20%  Similarity=0.245  Sum_probs=32.4

Q ss_pred             CCeeecCC-CC-------CCCCcEEEecccCCC---CCCch----hHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQ-------TNIPNVFAVGDVLHE---KPELT----PVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lq-------TSvpgIYAiGDva~g---~~~la----~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||+ +|       |.+||+||+|.++.+   ...+.    ..++-.|++|++++..
T Consensus       507 ~GGl~id~~~~Vl~~~g~~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~  567 (572)
T 1d4d_A          507 MGGLVIDTKAEVKSEKTAKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAK  567 (572)
T ss_dssp             CCEEEBCTTCEEEBSSSSSEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEECCCCeEEcCCCCcccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHH
Confidence            46688887 75       789999999999732   11122    3456778999988864

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=82.05  E-value=0.87  Score=44.84  Aligned_cols=46  Identities=13%  Similarity=0.068  Sum_probs=33.1

Q ss_pred             CCeeecCC-CC------CCCCcEEEecccCCCC---CCc----hhHHHHHHHHHHHHHhC
Q psy3825          46 NAKIDSDN-EQ------TNIPNVFAVGDVLHEK---PEL----TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        46 ~G~I~VDe-lq------TSvpgIYAiGDva~g~---~~l----a~vA~~qG~vAA~nI~G   91 (332)
                      -|.|.||+ +|      +.+||+||+|.++.+-   ..+    ...++-.|++|++++.+
T Consensus       449 ~GGl~~d~~~~Vl~~~g~~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~  508 (510)
T 4at0_A          449 LGGLRTTVNSEVLHVSGEPIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAK  508 (510)
T ss_dssp             CCEECBCTTCEEEBTTSSEEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             CcCeeECCCCceECCCCCCcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHh
Confidence            46688888 77      6799999999998321   111    23566789999998864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=81.60  E-value=0.56  Score=48.25  Aligned_cols=45  Identities=20%  Similarity=0.270  Sum_probs=30.5

Q ss_pred             CCeeecCC-CC---------CCCCcEEEecccCC----CCCCchh----HHHHHHHHHHHHHh
Q psy3825          46 NAKIDSDN-EQ---------TNIPNVFAVGDVLH----EKPELTP----VAVQAGKLLAARLY   90 (332)
Q Consensus        46 ~G~I~VDe-lq---------TSvpgIYAiGDva~----g~~~la~----vA~~qG~vAA~nI~   90 (332)
                      -|.|.||. .|         |++||+||+|+|+.    |...+..    .++-.|++|+.++.
T Consensus       367 mGGi~~d~~~~Vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa  429 (621)
T 2h88_A          367 MGGIPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIA  429 (621)
T ss_dssp             SCBEEBCTTSEEEEEETTEEEEEEEEEECGGGEECSSSTTSCCTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCcEeECCCCeEeecccCCCcccCceEEccccccccccCCCCCchHhHHHHHHHHHHHHHHHH
Confidence            36688887 66         67999999999863    1112232    34556888888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d1h6va3	133	d.87.1.1 (A:367-499) Mammalian thioredoxin reducta	2e-22
d1h6va3	133	d.87.1.1 (A:367-499) Mammalian thioredoxin reducta	2e-07
d3lada3	124	d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas	9e-15
d3lada3	124	d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas	0.001
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-13
d1v59a3	123	d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas	3e-13
d1v59a3	123	d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas	3e-05
d1feca3	128	d.87.1.1 (A:358-485) Trypanothione reductase {Crit	9e-13
d1feca3	128	d.87.1.1 (A:358-485) Trypanothione reductase {Crit	1e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-12
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-12
d1ebda3	115	d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas	2e-11
d1ebda3	115	d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas	0.004
d1onfa3	119	d.87.1.1 (A:377-495) Glutathione reductase {Plasmo	4e-11
d1onfa3	119	d.87.1.1 (A:377-495) Glutathione reductase {Plasmo	3e-05
d1gesa3	115	d.87.1.1 (A:336-450) Glutathione reductase {Escher	4e-11
d1gesa3	115	d.87.1.1 (A:336-450) Glutathione reductase {Escher	2e-05
d1mo9a3	140	d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c	4e-11
d1mo9a3	140	d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c	3e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	5e-11
d1ojta3	128	d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenas	6e-11
d1dxla3	123	d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas	1e-10
d1dxla3	123	d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas	2e-04
d1lvla3	123	d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenas	2e-10
d1xdia2	118	d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenas	4e-10
d3grsa3	115	d.87.1.1 (A:364-478) Glutathione reductase {Human	4e-10
d3grsa3	115	d.87.1.1 (A:364-478) Glutathione reductase {Human	1e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	9e-10
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-09
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	7e-09
d1nhpa3	126	d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus	2e-08
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	2e-07
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	2e-07
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	3e-07
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	4e-07
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	5e-07
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	9e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	9e-05
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	3e-04
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	0.001

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.1 bits (220), Expect = 2e-22
 Identities = 50/102 (49%), Positives = 73/102 (71%)

Query: 227 CYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 286
             +++YH+++ P E+ +P R+  +CY KV+C     ++V+G H +GPNAGEV QG+AAA+
Sbjct: 31  ENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAGEVTQGFAAAL 90

Query: 287 KCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC 328
           KCGLT + L+ST+GIHP  AE FT +++TKRSG D     CC
Sbjct: 91  KCGLTKQQLDSTIGIHPVCAEIFTTLSVTKRSGGDILQSGCC 132

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 35/65 (53%), Positives = 47/65 (72%)

Query: 99  YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
           Y NV TTVFTPLEYGC GLSEEKA E +G +N+E+YH+++ P E+ +P R+  +CY K I
Sbjct: 1   YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVI 60

Query: 159 YHAYY 163
            +   
Sbjct: 61  CNLKD 65

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 67.6 bits (165), Expect = 9e-15
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 221 QRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQ 280
               +   + +    +  +   +   N    ++KV+ +     +VLG+H IGP+A E++Q
Sbjct: 23  ALKAEGVAINVGVFPFAASGRAMAA-NDTAGFVKVIADAKT-DRVLGVHVIGPSAAELVQ 80

Query: 281 GYAAAVKCGLTFETLESTVGIHPTLAEEF 309
             A A++ G + E L   V  HP L+E  
Sbjct: 81  QGAIAMEFGTSAEDLGMMVFAHPALSEAL 109

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 99  YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
           Y  +   ++T  E   VG +E+  +    A N  +    +  +   +   N    ++K I
Sbjct: 1   YDLIPAVIYTHPEIAGVGKTEQALKAEGVAIN--VGVFPFAASGRAMAA-NDTAGFVKVI 57

Query: 159 YHA 161
             A
Sbjct: 58  ADA 60

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.7 bits (161), Expect = 2e-13
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query: 49  IDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMD 98
             +D EQTN+P ++A+GD+L  K ELTPVA+QAG+LLA RLYG  T + D
Sbjct: 186 PVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVKCD 235

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (154), Expect = 3e-13
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 221 QRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQ 280
           Q        KI    +         ++    ++K++ +    +++LG H IGPNAGE+I 
Sbjct: 23  QLKEAGIDYKIGKFPFAANSRAKTNQDT-EGFVKILIDSKT-ERILGAHIIGPNAGEMIA 80

Query: 281 GYAAAVKCGLTFETLESTVGIHPTLAEEF 309
               A++ G + E +      HPTL+E F
Sbjct: 81  EAGLALEYGASAEDVARVCHAHPTLSEAF 109

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 99  YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
           Y N+ + +++  E   VG +EE+ +E      +  +                   ++K +
Sbjct: 1   YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKT---NQDTEGFVKIL 57

Query: 159 YHA 161
             +
Sbjct: 58  IDS 60

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 62.4 bits (151), Expect = 9e-13
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 224 PQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYA 283
            +   + +Y + + P    I     ++  +++V    A  +VLG+H +G ++ E+IQ  A
Sbjct: 26  KKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVT-NHADGEVLGVHMLGDSSPEIIQSVA 84

Query: 284 AAVKCGLTFETLESTVGIHPTLAEEFT 310
             +K G       +T+G+HPT AEE  
Sbjct: 85  ICLKMGAKISDFYNTIGVHPTSAEELC 111

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 99  YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
           +  VA  VF+    G  G  EE A + Y  D + +Y + + P    I     ++  ++ +
Sbjct: 1   HTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAVYESSFTPLMHNISGSTYKKFMVRIV 58

Query: 159 YHAYYKPTEFF 169
            +         
Sbjct: 59  TNHADGEVLGV 69

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 2e-12
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
                   R   T++ +++  G++   +   I  + + TN+  ++AVGDV   K  LTPV
Sbjct: 141 GMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCG-KALLTPV 199

Query: 78  AVQAGKLLAARLYGNGT-TQMD 98
           A+ AG+ LA RL+     +++D
Sbjct: 200 AIAAGRKLAHRLFEYKEDSKLD 221

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 63.3 bits (153), Expect = 2e-12
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
              +  +GRR  T+E  +   G+K+            +T++PN+FA+GD++   P L   
Sbjct: 143 SRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVP-GPALAHK 201

Query: 78  AVQAGKLLAARLYGNGTTQMDY 99
           A   GK+ A  + G+  + +DY
Sbjct: 202 ASYEGKVAAEAIAGHP-SAVDY 222

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
           N    +LK+V  +     ++G   IGPNA ++I     A++ G+T E +  T+  HPTL 
Sbjct: 46  NDTDGFLKLVVRKE-DGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLG 104

Query: 307 E 307
           E
Sbjct: 105 E 105

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 102 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHA 161
           +   VF+  E   VG  E++A++         +          +   N    +LK +   
Sbjct: 2   IPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALAL---NDTDGFLKLVVRK 58

Query: 162 YYKPTEFF 169
                   
Sbjct: 59  EDGVIIGA 66

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 256 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR 311
           +      + + G+H IG NA E++QG+A A+K   T +  + T+ IHPT AEEF  
Sbjct: 62  LVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT 117

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 34/72 (47%)

Query: 99  YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
           Y+ + T +F+    G +GLSEE A ++YG +N++IY + +    F +    P+     ++
Sbjct: 1   YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYL 60

Query: 159 YHAYYKPTEFFI 170
                   E   
Sbjct: 61  KLVCVGKDELIK 72

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 227 CYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 286
                 +       +     + Q C +K+VC  +  +K++G+H IG    E++QG+A A+
Sbjct: 30  DDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGS-EEKIVGIHGIGFGMDEMLQGFAVAL 88

Query: 287 KCGLTFETLESTVGIHPTLAEEFT 310
           K G T +  ++TV IHPT AEEF 
Sbjct: 89  KMGATKKDFDNTVAIHPTAAEEFV 112

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 99  YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
           Y N+ T VF+    G VGL+E +A E YG D +++Y + +    +     + Q C +K +
Sbjct: 1   YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAM-YTAVTTHRQPCRMKLV 59

Query: 159 YHAYYKPTEFF 169
                +     
Sbjct: 60  CVGSEEKIVGI 70

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 57.8 bits (139), Expect = 4e-11
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI--HPT 304
                + K+V +    +KVLG H +G  A +  Q     +K GLT + L     +  +PT
Sbjct: 64  AHMSGFQKIVIDAK-TRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPT 122

Query: 305 LAEEFTRVTITKR 317
              + +R+    +
Sbjct: 123 HFIQLSRLRAGSK 135

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 7/39 (17%), Positives = 12/39 (30%)

Query: 100 QNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYY 138
           +N    + T  E   +G+ EE+A                
Sbjct: 2   KNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDT 40

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 59.6 bits (143), Expect = 5e-11
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 37  NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQ 96
            AGV+V    A       +TN+ N++A+GDV  ++  LTPVA+  G      ++ N    
Sbjct: 180 KAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVT-DRVMLTPVAINEGAAFVDTVFANKPRA 238

Query: 97  MD 98
            D
Sbjct: 239 TD 240

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 56.9 bits (137), Expect = 6e-11
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 225 QRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAA 284
                     +              + + K++   A   +++G   +GPN G++I     
Sbjct: 26  ASARKITKANFPWAASGRAIANGCDKPFTKLIF-DAETGRIIGGGIVGPNGGDMIGEVCL 84

Query: 285 AVKCGLTFETLESTVGIHPTLAEEF 309
           A++ G     +  T+  HPTL E  
Sbjct: 85  AIEMGCDAADIGKTIHPHPTLGESI 109

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 56.1 bits (135), Expect = 1e-10
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLA 306
           +     +K++ E+    K+LG+H + PNAGE+I   A A++   + E +      HPT++
Sbjct: 48  DNAEGLVKIIAEKET-DKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMS 106

Query: 307 EEF 309
           E  
Sbjct: 107 EAI 109

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 99  YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
           Y  V   V+T  E   VG +EE+ +E        +    +          +     +K I
Sbjct: 1   YDKVPGVVYTNPEVASVGKTEEQVKETGV--EYRVGKFPFMANSRAKAI-DNAEGLVKII 57

Query: 159 YHA 161
              
Sbjct: 58  AEK 60

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 17/83 (20%), Positives = 29/83 (34%)

Query: 225 QRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAA 284
            +  L    A +             +     V  R     +LG   +G    E+   +A 
Sbjct: 25  SQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQ 84

Query: 285 AVKCGLTFETLESTVGIHPTLAE 307
           +++ G   E +  T+  HPTL E
Sbjct: 85  SLEMGACLEDVAGTIHAHPTLGE 107

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 54.7 bits (131), Expect = 4e-10
 Identities = 16/85 (18%), Positives = 31/85 (36%)

Query: 225 QRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAA 284
               +               + +  R     +  R +   V+G   + P A E+I   A 
Sbjct: 25  DAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAV 84

Query: 285 AVKCGLTFETLESTVGIHPTLAEEF 309
           AV+  +T   L  T+ ++P+L+   
Sbjct: 85  AVQNRITVNELAQTLAVYPSLSGSI 109

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 4e-10
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 227 CYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 286
             +K Y   + P    + +R  +     V   +   +KV+G+H  G    E++QG+A AV
Sbjct: 31  ENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANK--EEKVVGIHMQGLGCDEMLQGFAVAV 88

Query: 287 KCGLTFETLESTVGIHPTLAEEFT 310
           K G T    ++TV IHPT +EE  
Sbjct: 89  KMGATKADFDNTVAIHPTSSEELV 112

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 18/70 (25%), Positives = 31/70 (44%)

Query: 99  YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFI 158
           Y N+ T VF+    G VGL+E++A   YG +N++ Y   + P    + +R  +       
Sbjct: 1   YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVC 60

Query: 159 YHAYYKPTEF 168
            +   K    
Sbjct: 61  ANKEEKVVGI 70

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (134), Expect = 9e-10
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 1/84 (1%)

Query: 8   SMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 67
            +  +   T   V   +GRR           G++V      +  D   +  P++  VGDV
Sbjct: 145 DVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 204

Query: 68  LHEKPELTPVAVQAGKLLAARLYG 91
               P L   A + G      L  
Sbjct: 205 T-FGPMLAHKAEEEGIAAVEMLKT 227

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 15/91 (16%)

Query: 1   MRIATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPN 60
           + IATG+                 GR   T    +   GV+       + ++   TN+  
Sbjct: 140 IIIATGSD--------------VKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSG 185

Query: 61  VFAVGDVLHEKPELTPVAVQAGKLLAARLYG 91
           V+A+GDV+   P L   A + G      L G
Sbjct: 186 VYAIGDVI-PGPMLAHKAEEDGVACVEYLAG 215

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 53.4 bits (127), Expect = 7e-09
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 18  DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPV 77
           + ++ A  R    +  +   AGV V            +TN+P+++A+GD++  +P L   
Sbjct: 151 NCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVG-QPMLAHK 209

Query: 78  AVQAGKLLAARLYGN 92
           AV  G + A    G+
Sbjct: 210 AVHEGHVAAENCAGH 224

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 225 QRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYA 283
           Q+   +                + Q+ + K+V +     ++LG   +        I   +
Sbjct: 26  QKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPET-TQILGAQLMSKADLTANINAIS 84

Query: 284 AAVKCGLTFETLESTV-GIHPTLAEEFTRVTI 314
            A++  +T E L        P   + +  +  
Sbjct: 85  LAIQAKMTIEDLAYADFFFQPAFDKPWNIINT 116

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 1   MRIATGASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPN 60
                G ++             +  R    +   +  AGVK   +   +    + TNI  
Sbjct: 120 TLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEG 179

Query: 61  VFAVGDVLHEKPELTPVAVQAGKLLAARLYGN 92
           ++AVGD      ELTPVAV AG+ L+ RL+ N
Sbjct: 180 IYAVGDNTG-AVELTPVAVAAGRRLSERLFNN 210

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 41  KVIPENAKIDSDNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTT 95
           ++   N        +T    ++A GD       L  VA   G++      G G +
Sbjct: 177 QLGRGNYLTVDRVSRTLATGIYAAGDCT-GLLPLASVAAMQGRIAMYHALGEGVS 230

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 10  DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 69
           + +   +     M  GR   T++  + NAGV +     ++D +  +TN+ N++A+GDV +
Sbjct: 153 EHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVD-EYSRTNVSNIYAIGDVTN 211

Query: 70  EKPELTPVAVQAGKLLAARLYGNGTTQ 96
            +  LTPVA+     L   ++G    +
Sbjct: 212 -RVMLTPVAINEAAALVDTVFGTTPRK 237

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 9   MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVL 68
             +       +  + I RR +T +   +++GV +         D   T++P V+A+GDV+
Sbjct: 142 DTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVV 201

Query: 69  HEKPELTPVAVQAGKLLAARLYGNGTTQMD 98
                L   A + G ++A R+ G+   QM+
Sbjct: 202 -RGAMLAHKASEEGVVVAERIAGHK-AQMN 229

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 52  DNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDY 99
           +  QT++PNV+AVGD++   P     A ++G   A  + G    ++ Y
Sbjct: 217 EYLQTSVPNVYAVGDLIG-GPMEMFKARKSGCYAARNVMGE---KISY 260

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 52  DNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLE 111
           +N++T++ N++AVGD       +   + +   L   +LY         +NV   +F  ++
Sbjct: 180 ENQRTSVNNIYAVGDCC-----MVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQ 234

Query: 112 YGCVGLSEE--KAEELYGA 128
              V ++     A+ L+  
Sbjct: 235 LTPVAINAGRLLADRLFLK 253

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 52  DNEQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNG 93
           +  QT++ NV+A+GDV  E P L   A+  G+++A  + G  
Sbjct: 176 ERCQTSMHNVWAIGDVAGE-PMLAHRAMAQGEMVAEIIAGKA 216

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 9   MDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVL 68
           +       YD +++A G R L     +++A    +     I+ ++ QT+ P + AVGD  
Sbjct: 94  LSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVIN-EHMQTSDPLIMAVGDCA 152

Query: 69  ---------HEKPELTPVAVQAGKLLAARLYG 91
                      + E  P A++  + +AA L G
Sbjct: 153 RFHSQLYDRWVRIESVPNALEQARKIAAILCG 184

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 42  VIPENAKIDSDNEQTNIPNVFAVGDVLHEK---PELTPVAVQAGKLLAARLYG 91
           +      +  DN +T+  +V+A+GD              A++  ++LA  L G
Sbjct: 114 IHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	99.96
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	99.94
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	99.93
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.93
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	99.93
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.93
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.92
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.92
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.92
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.92
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.92
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	99.91
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.88
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.8
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.74
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.7
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.68
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.68
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.62
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.6
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.57
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.53
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.5
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.49
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.48
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.48
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.42
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.42
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.36
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.34
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.27
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.96
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.82
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.77
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.5
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.36
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.27
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.61
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.86
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.0
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	95.27
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.25
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	95.21
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.23
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	92.93
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.89
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.31
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	86.53
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	83.59
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	82.16

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.2e-29  Score=213.65  Aligned_cols=133  Identities=56%  Similarity=1.065  Sum_probs=112.0

Q ss_pred             cccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCCCCCccc
Q psy3825          99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRC  178 (332)
Q Consensus        99 y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      |..+|+++|++||+|+||+||+||+++++.+++.++...+.+......                                
T Consensus         1 Y~~VP~~vfT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~--------------------------------   48 (133)
T d1h6va3           1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVP--------------------------------   48 (133)
T ss_dssp             CSSCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTT--------------------------------
T ss_pred             CCCCCEEecCcchheeEeCCHHHHHHhccccccchheeccchhhhhhh--------------------------------
Confidence            568999999999999999999999999776667776544433221000                                


Q ss_pred             hheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceEEEEEEe
Q psy3825         179 YLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCE  258 (332)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~  258 (332)
                                                                                        ..+...++++++++
T Consensus        49 ------------------------------------------------------------------~~~~~~~~~~~v~~   62 (133)
T d1h6va3          49 ------------------------------------------------------------------SRDNNKCYAKVICN   62 (133)
T ss_dssp             ------------------------------------------------------------------TCCTTCEEEEEEEE
T ss_pred             ------------------------------------------------------------------hhcccccceEEEEE
Confidence                                                                              12345677777776


Q ss_pred             cCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhhhccCCCCCCCcccC
Q psy3825         259 RAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCR  329 (332)
Q Consensus       259 ~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~~~~~~~  329 (332)
                      ++++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|+|..+..++++..|+.+.|||.
T Consensus        63 ~~~~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~l~~~~~s~~~~~~~~cc~  133 (133)
T d1h6va3          63 LKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSVTKRSGGDILQSGCCG  133 (133)
T ss_dssp             GGGTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGCCCBGGGCCCCCCCSCCC
T ss_pred             ecCcccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHhhhhhhccCCccccCCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999995

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.94  E-value=1.7e-26  Score=190.34  Aligned_cols=117  Identities=37%  Similarity=0.629  Sum_probs=96.9

Q ss_pred             cccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCCCCCccc
Q psy3825          99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRC  178 (332)
Q Consensus        99 y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      |..+|+++|++||+|+||+||+||+++++.+++.++...+.+......     |                          
T Consensus         1 Y~~vP~~vfT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~-----~--------------------------   49 (119)
T d1onfa3           1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVY-----D--------------------------   49 (119)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTS-----C--------------------------
T ss_pred             CCcCCeEeccCCccEEEECCHHHHHHhcccccccccccccCccccchh-----h--------------------------
Confidence            568999999999999999999999999776677776544332110000     0                          


Q ss_pred             hheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceEEEEEEe
Q psy3825         179 YLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCE  258 (332)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~  258 (332)
                                                                 +                   .  ..+..+|++|++++
T Consensus        50 -------------------------------------------~-------------------~--~~~~~~g~~kli~~   65 (119)
T d1onfa3          50 -------------------------------------------I-------------------E--PELKEKTYLKLVCV   65 (119)
T ss_dssp             -------------------------------------------S-------------------C--GGGSCCEEEEEEEE
T ss_pred             -------------------------------------------h-------------------h--hccCCCceEEEEEe
Confidence                                                       0                   0  12456799999999


Q ss_pred             cCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHH
Q psy3825         259 RAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR  311 (332)
Q Consensus       259 ~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~  311 (332)
                       +++++|||+|++|++|+|+||.+++||++|+|+++|.+++++|||++|+|..
T Consensus        66 -~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~  117 (119)
T d1onfa3          66 -GKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT  117 (119)
T ss_dssp             -TTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHH
T ss_pred             -cCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHh
Confidence             7999999999999999999999999999999999999999999999999874

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.6e-26  Score=186.59  Aligned_cols=113  Identities=37%  Similarity=0.699  Sum_probs=96.2

Q ss_pred             cccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCCCCCccc
Q psy3825          99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRC  178 (332)
Q Consensus        99 y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      |..+|+++|++||+|+||+||+||++++|.+++++....+.+..         |.                         
T Consensus         1 Y~~vP~~vft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~---------~a-------------------------   46 (115)
T d3grsa3           1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMY---------HA-------------------------   46 (115)
T ss_dssp             CTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGG---------GG-------------------------
T ss_pred             CCCCCEEecCcCccEEEecCcHHHHHHhCCcccceeEeeeeecc---------hh-------------------------
Confidence            56799999999999999999999999877666776554433211         10                         


Q ss_pred             hheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceEEEEEEe
Q psy3825         179 YLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCE  258 (332)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~  258 (332)
                                                                                     .  ..+..+||+|+++|
T Consensus        47 ---------------------------------------------------------------~--~~~~~~g~~k~i~~   61 (115)
T d3grsa3          47 ---------------------------------------------------------------V--TKRKTKCVMKMVCA   61 (115)
T ss_dssp             ---------------------------------------------------------------G--CSSCCCEEEEEEEE
T ss_pred             ---------------------------------------------------------------h--cccccceeEEEEEe
Confidence                                                                           0  23567899999999


Q ss_pred             cCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHH
Q psy3825         259 RAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR  311 (332)
Q Consensus       259 ~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~  311 (332)
                       +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|+|..
T Consensus        62 -~~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~  113 (115)
T d3grsa3          62 -NKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT  113 (115)
T ss_dssp             -TTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred             -cCCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHHHh
Confidence             7899999999999999999999999999999999999999999999999853

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-25  Score=186.70  Aligned_cols=68  Identities=31%  Similarity=0.613  Sum_probs=65.0

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +.+.||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus        48 ~~~~G~~Kli~d-~~~~~ilGa~ivG~~A~elI~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~  115 (123)
T d1v59a3          48 QDTEGFVKILID-SKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMA  115 (123)
T ss_dssp             TCCCCEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEEEE-CCCCEEEEEEEEchHHHHHHHHHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHH
Confidence            567899999999 78999999999999999999999999999999999999999999999999998774

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.4e-26  Score=185.86  Aligned_cols=112  Identities=39%  Similarity=0.703  Sum_probs=95.6

Q ss_pred             cccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCCCCCccc
Q psy3825          99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRC  178 (332)
Q Consensus        99 y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      |..+|+++|++||+|+||+||+||+++++.+++.+....|+...         |.                         
T Consensus         1 Y~~vP~~vft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~---------~a-------------------------   46 (115)
T d1gesa3           1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMY---------TA-------------------------   46 (115)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHH---------HH-------------------------
T ss_pred             CCCCCeEecCCCccEEEeCCHHHHHHHcCCcccceeeeeccccc---------cc-------------------------
Confidence            56899999999999999999999999977556766554433211         10                         


Q ss_pred             hheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceEEEEEEe
Q psy3825         179 YLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCE  258 (332)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~  258 (332)
                                                                                     .  ..+.++|++|+++|
T Consensus        47 ---------------------------------------------------------------~--~~~~~~g~~k~v~~   61 (115)
T d1gesa3          47 ---------------------------------------------------------------V--TTHRQPCRMKLVCV   61 (115)
T ss_dssp             ---------------------------------------------------------------T--SSSCCEEEEEEEEE
T ss_pred             ---------------------------------------------------------------c--eeccccceEEEEEe
Confidence                                                                           0  23568899999999


Q ss_pred             cCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHH
Q psy3825         259 RAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT  310 (332)
Q Consensus       259 ~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~  310 (332)
                       +++++|||+|++|++|+|+|+.+++||++|+|+++|.+++++|||++|+|.
T Consensus        62 -~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  112 (115)
T d1gesa3          62 -GSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV  112 (115)
T ss_dssp             -TTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             -cCCcEEEEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHHH
Confidence             789999999999999999999999999999999999999999999999875

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.93  E-value=1.1e-25  Score=186.78  Aligned_cols=68  Identities=35%  Similarity=0.578  Sum_probs=65.3

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +...||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.++++.
T Consensus        48 ~~~~G~vKlv~d-~~t~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~  115 (124)
T d3lada3          48 NDTAGFVKVIAD-AKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALA  115 (124)
T ss_dssp             TCCCCEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHH
T ss_pred             CCCCeEEEEEEE-CCCCEEEEEEEEcccHHHHHHHHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHH
Confidence            567899999999 78999999999999999999999999999999999999999999999999999885

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.92  E-value=2.8e-25  Score=184.31  Aligned_cols=68  Identities=28%  Similarity=0.536  Sum_probs=65.0

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +.++||+||++| +++++|||+|++|++|+|+||.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus        48 ~~~~G~~Klv~d-~~~~~ilG~~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~  115 (123)
T d1dxla3          48 DNAEGLVKIIAE-KETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMA  115 (123)
T ss_dssp             SCCCCEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHH
T ss_pred             CCCcceEEEEEE-CCCCEEEEEEEehhhHHHHHHHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHH
Confidence            567899999999 78999999999999999999999999999999999999999999999999999875

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=4.3e-25  Score=183.36  Aligned_cols=68  Identities=22%  Similarity=0.460  Sum_probs=65.1

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +.+.||+|+++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus        48 ~~~~g~vklv~d-~~t~~ILG~~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~  115 (123)
T d1lvla3          48 ESKSGFVRVVAR-RDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALR  115 (123)
T ss_dssp             TCCCCEEEEEEE-TTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHH
T ss_pred             Ccchhheeeeee-cccccceEEEEEeCchhhHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHH
Confidence            567899999999 78999999999999999999999999999999999999999999999999998874

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=6.4e-25  Score=181.12  Aligned_cols=68  Identities=25%  Similarity=0.415  Sum_probs=64.7

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +.+.||+||++| +++++|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus        48 ~~~~G~vKlv~d-~~~~~ilGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~~  115 (118)
T d1xdia2          48 EMRHGFVKIFCR-RSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARR  115 (118)
T ss_dssp             TCSSCEEEEEEE-TTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHH
T ss_pred             ccchhheEEEEe-cCCCceEEEEEEcCcHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHH
Confidence            567899999999 78999999999999999999999999999999999999999999999999998763

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.92  E-value=1e-24  Score=182.34  Aligned_cols=68  Identities=24%  Similarity=0.443  Sum_probs=65.1

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~  315 (332)
                      +...||+|+++| +++|+|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.+.+++..
T Consensus        48 ~~~~g~~Kli~d-~~~g~iLGa~ivG~~A~ElI~~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~  115 (128)
T d1ojta3          48 GCDKPFTKLIFD-AETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEV  115 (128)
T ss_dssp             TCCSCEEEEEEE-TTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHH
T ss_pred             CCccceEEEEEe-CCCCeEEEEEEEhhhHHHHHHHHHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHH
Confidence            568899999999 78999999999999999999999999999999999999999999999999999875

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=6.4e-25  Score=180.20  Aligned_cols=67  Identities=31%  Similarity=0.507  Sum_probs=64.0

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI  314 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~  314 (332)
                      ++.+||+|+++| +++++|||+|++|++|+|+||.+++||++|+|++||.+++++|||++|.+.+++.
T Consensus        46 ~~~~G~vKli~~-~~~~~iLG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~  112 (115)
T d1ebda3          46 NDTDGFLKLVVR-KEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAE  112 (115)
T ss_dssp             TCCCCEEEEEEE-TTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHH
T ss_pred             CCCcEEEEEEEe-CCcceEEEEEEEcCCHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHH
Confidence            457899999999 7899999999999999999999999999999999999999999999999998875

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.91  E-value=8.1e-25  Score=182.99  Aligned_cols=113  Identities=30%  Similarity=0.519  Sum_probs=95.4

Q ss_pred             cccceEEEEcCceeEEEcCCHHHHHHhcCCCCEEEEEeecCCccccccCCCccchhhhhhccccCCCcccccCCCCCccc
Q psy3825          99 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKFIYHAYYKPTEFFIPQRNPQRC  178 (332)
Q Consensus        99 y~~vP~~vftdPe~AsVGLTEe~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (332)
                      |..||+++|++||+|+||+||+||++++.  +++++...|.+....+.                                
T Consensus         1 y~~VP~aVfT~PeiA~VGlte~eA~~~g~--~~~v~~~~~~~~~~a~~--------------------------------   46 (128)
T d1feca3           1 HTKVACAVFSIPPMGVCGYVEEDAAKKYD--QVAVYESSFTPLMHNIS--------------------------------   46 (128)
T ss_dssp             CSSCCEEECCSSCEEEEECCHHHHHHHCS--EEEEEEEEECCHHHHHH--------------------------------
T ss_pred             CCCCCEEecCCCcceEEECCHHHHhhhhc--CcceeecccchHHHHHh--------------------------------
Confidence            56799999999999999999999999843  57776655544321110                                


Q ss_pred             hheeeecccCCCcccccCCCCCcchhhhhhcccCCCcccccCCCCCcchhhhhhcccCCCcccccccCCCcceEEEEEEe
Q psy3825         179 YLKVIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKIYHAYYKPTEFFIPQRNPQRCYLKVVCE  258 (332)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~  258 (332)
                                                                                        ..+...+++|+++|
T Consensus        47 ------------------------------------------------------------------~~~~~~~~~klv~~   60 (128)
T d1feca3          47 ------------------------------------------------------------------GSTYKKFMVRIVTN   60 (128)
T ss_dssp             ------------------------------------------------------------------SCTTCCEEEEEEEE
T ss_pred             ------------------------------------------------------------------ccccccceEEEeec
Confidence                                                                              12345689999999


Q ss_pred             cCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHH
Q psy3825         259 RAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV  312 (332)
Q Consensus       259 ~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~  312 (332)
                       +++|+|||+|++|++|+|+|+.+++||++|+|++||.+++++|||++|.|..+
T Consensus        61 -~~~g~iLGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~  113 (128)
T d1feca3          61 -HADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSM  113 (128)
T ss_dssp             -TTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred             -CCCCceeEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHH
Confidence             89999999999999999999999999999999999999999999999998664

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.88  E-value=2.2e-22  Score=169.62  Aligned_cols=68  Identities=28%  Similarity=0.402  Sum_probs=63.3

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCccHHHHHHHHHHHHHCCCCHHHHhcc--cccCCCchHHHHHHHhh
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST--VGIHPTLAEEFTRVTIT  315 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~a~e~i~~~~~ai~~~~t~~~l~~~--~~~~Pt~~e~~~~~~~~  315 (332)
                      +.++|++|+++| +++++|||+|++|++|+|+||.+++||++|+|++||.++  +++|||.+|.+.++...
T Consensus        64 ~~~~G~vKlv~d-~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~l~a~  133 (140)
T d1mo9a3          64 AHMSGFQKIVID-AKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRAG  133 (140)
T ss_dssp             GGGGCEEEEEEE-TTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHHTT
T ss_pred             CCCCceEEEEEe-cCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHHHhcC
Confidence            578999999999 799999999999999999999999999999999999986  88999999999877653

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=6.1e-20  Score=151.93  Aligned_cols=65  Identities=17%  Similarity=0.374  Sum_probs=58.4

Q ss_pred             CCcceEEEEEEecCCCCcEEEEEEeCcc-HHHHHHHHHHHHHCCCCHHHHhcccc-cCCCchHHHHHH
Q psy3825         247 NPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLESTVG-IHPTLAEEFTRV  312 (332)
Q Consensus       247 ~~~~~~~klv~~~~~~~~ilG~~~ig~~-a~e~i~~~~~ai~~~~t~~~l~~~~~-~~Pt~~e~~~~~  312 (332)
                      +.++||+||++| +++++|||+|++|++ |+|+|+.+++||+.|+|++||.++.+ +|||++|.++.+
T Consensus        48 ~~~~g~~Kli~d-~~t~~IlG~~ivG~~~a~e~I~~~~~ai~~~~t~~dL~~~~~~yhPt~se~~~~l  114 (126)
T d1nhpa3          48 DKQKAWFKLVYD-PETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNII  114 (126)
T ss_dssp             TCCEEEEEEEEC-TTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHH
T ss_pred             CCcceeEEEEEE-CCCCCEEEEEEEechhHHHHHHHHHHHHHcCCCHHHHhcCcccCCCCCchhHHHH
Confidence            457899999999 789999999999975 99999999999999999999999855 589999986444

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.74  E-value=1.8e-18  Score=148.45  Aligned_cols=87  Identities=32%  Similarity=0.601  Sum_probs=78.5

Q ss_pred             CCeeEEEcCEEEEc--------cCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHH
Q psy3825          10 DKVFEDTYDTVLMA--------IGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQ   80 (332)
Q Consensus        10 ~dg~~I~aD~VLvA--------tGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~   80 (332)
                      .+..++.+|.+++|        +|++||++.|+|+++|+++| ++|+|.||+ ||||+|+|||+|||+ ++++++++|..
T Consensus       127 ~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~gv~~~-~~G~I~vd~~~~T~~~gvyA~GDv~-~~~~~~~~A~~  204 (223)
T d1ebda1         127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMT-NRGLIEVDQQCRTSVPNIFAIGDIV-PGPALAHKASY  204 (223)
T ss_dssp             TEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTTCCBC-TTSCBCCCTTCBCSSTTEEECGGGS-SSCCCHHHHHH
T ss_pred             ccceEEecccEEEEcCCCccccccceecCCCCChHhcCceEC-CCCCEeECCCCCCCCCCEEEEeccC-CCcccHHHHHH
Confidence            34567899999998        59999999999999999999 899999999 999999999999999 78899999999


Q ss_pred             HHHHHHHHHhCCCCccccc
Q psy3825          81 AGKLLAARLYGNGTTQMDY   99 (332)
Q Consensus        81 qG~vAA~nI~G~~~~~~~y   99 (332)
                      ||++||++|+|++ ..++|
T Consensus       205 ~g~~aa~~i~g~~-~~~dy  222 (223)
T d1ebda1         205 EGKVAAEAIAGHP-SAVDY  222 (223)
T ss_dssp             HHHHHHHHHTSCC-CCCCC
T ss_pred             HHHHHHHHHcCCC-CCCCC
Confidence            9999999999865 34555

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.70  E-value=1.3e-17  Score=143.49  Aligned_cols=83  Identities=24%  Similarity=0.305  Sum_probs=76.9

Q ss_pred             cCCeeEEEcCEEEEccC-----ccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHH
Q psy3825           9 MDKVFEDTYDTVLMAIG-----RRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAG   82 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtG-----r~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG   82 (332)
                      ..++.++.+|.||+|+|     |+||++.|+|+++|++++ ++|+|.||+ +|||+|+|||+|||+ +++++++.|..+|
T Consensus       129 ~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~-~~G~i~vd~~~~T~v~gi~A~GDv~-~g~~l~~~A~~~g  206 (221)
T d1dxla1         129 EGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETD-KLGRILVNERFSTNVSGVYAIGDVI-PGPMLAHKAEEDG  206 (221)
T ss_dssp             SSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBC-SSSCBCCCTTCBCSSTTEEECSTTS-SSCCCHHHHHHHH
T ss_pred             cccccccccceEEEeECCCccCccccCCCCChHhcCceEc-CCCcEEeCCCcccCCCCEEEEeccC-CCcccHHHHHHHH
Confidence            34567899999999988     889999999999999999 899999999 999999999999999 7899999999999


Q ss_pred             HHHHHHHhCCC
Q psy3825          83 KLLAARLYGNG   93 (332)
Q Consensus        83 ~vAA~nI~G~~   93 (332)
                      +.||++|+|+.
T Consensus       207 ~~aa~~i~g~~  217 (221)
T d1dxla1         207 VACVEYLAGKV  217 (221)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHcCCC
Confidence            99999999865

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.68  E-value=1.6e-17  Score=148.92  Aligned_cols=81  Identities=22%  Similarity=0.274  Sum_probs=73.6

Q ss_pred             CeeEEEcCEEEEccCccccCccccccc--------cCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSN--------AGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQA   81 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~--------aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~q   81 (332)
                      +++++++|.||+|+|++|++..+..++        +||+++ ++|+|.||+ ||||+|+|||+|||+ +++++++.|..|
T Consensus       168 ~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~-~~G~I~Vn~~~~Ts~~~IyA~GDv~-~~~~l~~~A~~~  245 (261)
T d1mo9a1         168 AGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLG-PKGEVLVNEYLQTSVPNVYAVGDLI-GGPMEMFKARKS  245 (261)
T ss_dssp             TTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBC-TTSCBCCCTTSBCSSTTEEECGGGG-CSSCSHHHHHHH
T ss_pred             ccceEeeeeeeeccCCCCCcCcccccccccccccceeeeec-cCCEEEeCCCcccCCCCEEEEEEeC-CCcccHHHHHHH
Confidence            467899999999999999998765443        689999 899999999 999999999999999 789999999999


Q ss_pred             HHHHHHHHhCCC
Q psy3825          82 GKLLAARLYGNG   93 (332)
Q Consensus        82 G~vAA~nI~G~~   93 (332)
                      |++||.||+|++
T Consensus       246 G~~aa~~i~G~k  257 (261)
T d1mo9a1         246 GCYAARNVMGEK  257 (261)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCC
Confidence            999999999964

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=3.4e-17  Score=144.76  Aligned_cols=85  Identities=22%  Similarity=0.331  Sum_probs=75.7

Q ss_pred             CCeeEEEcCEEEEccCcccc---------CccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRAL---------TEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAV   79 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PN---------t~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~   79 (332)
                      ++..++++|.||+|+|.+|+         .+.|+|+..|++++ ++|+|.||+ ||||+|+|||+|||+ +.++++++|.
T Consensus       137 g~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~~-~~G~I~vd~~~~T~~~gIyA~GDv~-~~~~l~~~A~  214 (233)
T d1xdia1         137 GSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLG-RGNYLTVDRVSRTLATGIYAAGDCT-GLLPLASVAA  214 (233)
T ss_dssp             SCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCCB-TTTBCCCCSSSBCSSTTEEECSGGG-TSCSCHHHHH
T ss_pred             CceeeeecceeeeecCcccccccccccccccccccchhhhccc-CCCcCCcCCCcccCCCCEEEEEEeC-CCchhHHHHH
Confidence            34568999999999998774         56778899999999 899999999 999999999999998 7889999999


Q ss_pred             HHHHHHHHHHhCCCCcc
Q psy3825          80 QAGKLLAARLYGNGTTQ   96 (332)
Q Consensus        80 ~qG~vAA~nI~G~~~~~   96 (332)
                      .+|++||.|++|....+
T Consensus       215 ~~g~~aa~~~~g~~~~p  231 (233)
T d1xdia1         215 MQGRIAMYHALGEGVSP  231 (233)
T ss_dssp             HHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHcCCCCCC
Confidence            99999999999865443

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.9e-16  Score=135.25  Aligned_cols=80  Identities=35%  Similarity=0.508  Sum_probs=74.0

Q ss_pred             eeEEEcCEEEEccC--------ccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHH
Q psy3825          12 VFEDTYDTVLMAIG--------RRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAG   82 (332)
Q Consensus        12 g~~I~aD~VLvAtG--------r~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG   82 (332)
                      ..++.+|.+++++|        |.||++.|+|+++|++++ ++|+|.||+ +|||+|||||+|||+ ++++++++|..+|
T Consensus       127 ~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~~~-~~G~I~vd~~~~T~~~gvyA~GDv~-~~~~l~~~A~~~G  204 (221)
T d3grsa1         127 GKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTD-DKGHIIVDEFQNTNVKGIYAVGDVC-GKALLTPVAIAAG  204 (221)
T ss_dssp             TEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCCBC-TTSCBCCCTTCBCSSTTEEECGGGG-TSSCCHHHHHHHH
T ss_pred             ccccccceeEEecCccccCCCccccCCCCcCchhcCcEEC-CCccEEeCCCccccCCcEEEEEEcc-CCcCcHHHHHHHH
Confidence            35788999999998        788999999999999999 899999999 999999999999999 7889999999999


Q ss_pred             HHHHHHHhCCC
Q psy3825          83 KLLAARLYGNG   93 (332)
Q Consensus        83 ~vAA~nI~G~~   93 (332)
                      +.||++|++..
T Consensus       205 ~~aa~~~~~~~  215 (221)
T d3grsa1         205 RKLAHRLFEYK  215 (221)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999854

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=6.9e-16  Score=134.31  Aligned_cols=85  Identities=44%  Similarity=0.664  Sum_probs=72.9

Q ss_pred             CeeEEEcCEEEEccCccccC--------ccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALT--------EETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQA   81 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt--------~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~q   81 (332)
                      +...+.++.+++++|.+|+.        ..++|+..|++++.+.|+|.||+ ||||+|+|||+|||+.+.++++|+|+.+
T Consensus       139 ~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~~l~~~A~~e  218 (235)
T d1h6va1         139 KEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQA  218 (235)
T ss_dssp             CEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSCCCHHHHHHH
T ss_pred             cccccccccceeecCCCceeEEEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCcccHHHHHHH
Confidence            34568999999999999864        45667888999983359999999 9999999999999986667899999999


Q ss_pred             HHHHHHHHhCCCCc
Q psy3825          82 GKLLAARLYGNGTT   95 (332)
Q Consensus        82 G~vAA~nI~G~~~~   95 (332)
                      |++||++|+|....
T Consensus       219 G~~aa~~~~g~~~~  232 (235)
T d1h6va1         219 GRLLAQRLYGGSTV  232 (235)
T ss_dssp             HHHHHHHHHHCCCC
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999986543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.57  E-value=2.3e-15  Score=131.89  Aligned_cols=83  Identities=29%  Similarity=0.470  Sum_probs=74.2

Q ss_pred             CeeEEEcCEEEEccCccccCc--------cccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTE--------ETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQA   81 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~--------~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~q   81 (332)
                      ..+++++|.|++++|.+|...        .|+|+++|++++ ++|+|.||+ ||||+|+|||+|||+ ++++++++|..|
T Consensus       146 ~~e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~-~~G~I~vd~~~~Ts~~~iyA~GDv~-~~~~~~~~A~~e  223 (240)
T d1feca1         146 VLETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVA-KNGAIKVDAYSKTNVDNIYAIGDVT-DRVMLTPVAINE  223 (240)
T ss_dssp             EEEEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBC-TTSCBCCCTTCBCSSTTEEECGGGG-CSCCCHHHHHHH
T ss_pred             ceEEEecceEEEecCCceeEccccccccCCCCccccCeEEC-CCCcEEcCcccCcCCCCEEEEEECC-CCccchhhHHHH
Confidence            356799999999999888654        456889999999 899999999 999999999999999 789999999999


Q ss_pred             HHHHHHHHhCCCCc
Q psy3825          82 GKLLAARLYGNGTT   95 (332)
Q Consensus        82 G~vAA~nI~G~~~~   95 (332)
                      |+.||++++|....
T Consensus       224 g~~aa~~~~~~~~~  237 (240)
T d1feca1         224 GAAFVDTVFANKPR  237 (240)
T ss_dssp             HHHHHHHHHSSCCC
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999986543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.53  E-value=4.2e-15  Score=129.85  Aligned_cols=74  Identities=28%  Similarity=0.487  Sum_probs=66.2

Q ss_pred             CEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhCCC
Q psy3825          18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNG   93 (332)
Q Consensus        18 D~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G~~   93 (332)
                      |.++.+.++.|++..+.++++|+++| ++|+|+||+ ||||+|||||+|||+ ++++++++|+.||++||++|+|++
T Consensus       151 ~~~l~~~~~~~~~~~~~~e~~g~~~d-~~G~I~vd~~~~TsvpgVyAaGDv~-~~~~l~~~A~~eG~~Aa~~i~G~~  225 (229)
T d1ojta1         151 NCIIAAGSRAPNGKLISAEKAGVAVT-DRGFIEVDKQMRTNVPHIYAIGDIV-GQPMLAHKAVHEGHVAAENCAGHK  225 (229)
T ss_dssp             EEEECCCEEEECGGGTTGGGTTCCCC-TTSCCCCCTTSBCSSTTEEECGGGT-CSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             eEEEEecccCCcccccchhhhCccCC-CCCCEEcCCCccCCCCCEEEEEecC-CCcchHHHHHHHHHHHHHHHcCCC
Confidence            45555556778888877899999999 899999999 999999999999999 788999999999999999999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.50  E-value=2.4e-14  Score=123.97  Aligned_cols=82  Identities=26%  Similarity=0.353  Sum_probs=71.4

Q ss_pred             CCeeEEEcCEEEEccCccccC-------ccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALT-------EETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQA   81 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt-------~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~q   81 (332)
                      .++.++.+|.+++|+|.+|..       ..+++...+++++  +|+|.||+ ||||+|+|||+|||+ +.+++++.|..+
T Consensus       128 ~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~~--~g~i~vd~~~~T~~~~I~A~GDv~-~~~~l~~~a~~~  204 (220)
T d1lvla1         128 VDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMN--GAAIAIDERCQTSMHNVWAIGDVA-GEPMLAHRAMAQ  204 (220)
T ss_dssp             ETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCEE--TTEECCCTTCBCSSTTEEECGGGG-CSSCCHHHHHHH
T ss_pred             ccceeEeeceeeEcCCCCcccccccccccCCcceeeehhhc--CCcccccchhhcCCCCEEEEEEeC-Ccccchhhhhhh
Confidence            345789999999999988765       3455677788886  78899999 999999999999999 889999999999


Q ss_pred             HHHHHHHHhCCCC
Q psy3825          82 GKLLAARLYGNGT   94 (332)
Q Consensus        82 G~vAA~nI~G~~~   94 (332)
                      |++||++|+|+..
T Consensus       205 g~~~a~~i~G~~~  217 (220)
T d1lvla1         205 GEMVAEIIAGKAR  217 (220)
T ss_dssp             HHHHHHHHTTCCC
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999999653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.49  E-value=1.6e-14  Score=122.97  Aligned_cols=83  Identities=25%  Similarity=0.408  Sum_probs=72.5

Q ss_pred             CCeeEEEcCEEEEccCccccC-------ccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALT-------EETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQA   81 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt-------~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~q   81 (332)
                      .+..++.++.+++++|.+|..       ..|.++++|++++ ++|+|.||+ +|||+|+|||+|||+ +++.+++.|..+
T Consensus       136 ~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~-~~G~i~vd~~~~T~vpgiyA~GDv~-~g~~l~~~A~~~  213 (229)
T d3lada1         136 GSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLD-ERGFIYVDDYCATSVPGVYAIGDVV-RGAMLAHKASEE  213 (229)
T ss_dssp             SCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBC-TTSCBCCCTTSBCSSTTEEECGGGS-SSCCCHHHHHHH
T ss_pred             ccceeeecccccccCCcccccccccccccccchHhcCeeec-CCCcEEecccccCCCCCEEEEeCCc-chHHHHHHHHHH
Confidence            345678899999999977654       3455788999999 899999999 999999999999999 678999999999


Q ss_pred             HHHHHHHHhCCCC
Q psy3825          82 GKLLAARLYGNGT   94 (332)
Q Consensus        82 G~vAA~nI~G~~~   94 (332)
                      |+.||++|+|++.
T Consensus       214 G~~aa~~i~g~~~  226 (229)
T d3lada1         214 GVVVAERIAGHKA  226 (229)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999998654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=2.5e-14  Score=123.01  Aligned_cols=74  Identities=23%  Similarity=0.293  Sum_probs=68.0

Q ss_pred             CEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHhCCC
Q psy3825          18 DTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLYGNG   93 (332)
Q Consensus        18 D~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~G~~   93 (332)
                      +..+.++|++||++.|+++++|++++ ++|+|.||+ ++||+|+|||+||++ +++++++.|..+|+.||++|+++.
T Consensus       155 ~~~~~~~G~~p~~~~l~l~~~gv~~~-~~g~i~vd~~~~T~~~~v~A~GD~~-~g~~l~~~a~~~G~~aa~~i~~~~  229 (233)
T d1v59a1         155 SEVTPFVGRRPYIAGLGAEKIGLEVD-KRGRLVIDDQFNSKFPHIKVVGDVT-FGPMLAHKAEEEGIAAVEMLKTGH  229 (233)
T ss_dssp             EEECCCSCEEECCTTSCTTTTTCCBC-TTSCBCCCTTSBCSSTTEEECGGGS-SSCCCHHHHHHHHHHHHHHHHHSC
T ss_pred             cccceecccccCCCCcCchhcCeEEc-CCCcEEECCeEecCCCCEEEEcCCc-ccHHHHHHHHHHHHHHHHHHccCC
Confidence            34455999999999999999999999 899999999 999999999999999 788999999999999999998754

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.48  E-value=3.8e-14  Score=121.92  Aligned_cols=80  Identities=30%  Similarity=0.516  Sum_probs=70.1

Q ss_pred             eeEEEcCEEEE--------ccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHH
Q psy3825          12 VFEDTYDTVLM--------AIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAG   82 (332)
Q Consensus        12 g~~I~aD~VLv--------AtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG   82 (332)
                      ...+++|.+++        ..|+.|++..|++...||+++  +|+|.||+ |||++|+|||+|||+ ++++++++|..||
T Consensus       147 ~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~--~G~I~vde~~~T~~~~iyAvGDv~-~~~~l~~~A~~eg  223 (238)
T d1aoga1         147 KERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIK--NGGVQVDEYSRTNVSNIYAIGDVT-NRVMLTPVAINEA  223 (238)
T ss_dssp             EEEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEE--TTEECCCTTCBCSSTTEEECGGGG-TSCCCHHHHHHHH
T ss_pred             cccccccceeeecccccccccccccceeeecccccEEEEc--CCeEEecCCeeeccCCEEEEEEec-CCccchhhHHHHH
Confidence            45677888887        566777888888888999986  78999999 999999999999999 7889999999999


Q ss_pred             HHHHHHHhCCCC
Q psy3825          83 KLLAARLYGNGT   94 (332)
Q Consensus        83 ~vAA~nI~G~~~   94 (332)
                      ++||++|+|+..
T Consensus       224 ~~aa~~i~g~~~  235 (238)
T d1aoga1         224 AALVDTVFGTTP  235 (238)
T ss_dssp             HHHHHHHHSSSC
T ss_pred             HHHHHHHcCCCC
Confidence            999999998653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.42  E-value=8e-14  Score=117.62  Aligned_cols=83  Identities=24%  Similarity=0.258  Sum_probs=66.7

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccc---cccCceeecCCCeeecCC-CCCCCCcEEEecccCC------CC---C
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAV---SNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH------EK---P   72 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~L---e~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~------g~---~   72 (332)
                      .+.+++++++++|.||+|+|++|++..++.   ...|++.+   |.|.||+ +||+.|+|||+|||+.      +.   .
T Consensus        87 ~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~---~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g~~~~~  163 (183)
T d1d7ya1          87 TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD---DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERI  163 (183)
T ss_dssp             EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS---SSEECCTTCBCSSTTEEECGGGEEEECTTTCSEEEC
T ss_pred             eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC---CcEEeccceeccccccchhhhhhccceeeCCceech
Confidence            356678899999999999999998866432   24556543   4599999 9999999999999974      11   2


Q ss_pred             CchhHHHHHHHHHHHHHhC
Q psy3825          73 ELTPVAVQAGKLLAARLYG   91 (332)
Q Consensus        73 ~la~vA~~qG~vAA~nI~G   91 (332)
                      .+++.|.+||+.||+||+.
T Consensus       164 ~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         164 ETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHcC
Confidence            4688999999999999973

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.42  E-value=6.2e-14  Score=116.71  Aligned_cols=83  Identities=30%  Similarity=0.406  Sum_probs=67.6

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccc-cccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------CCCch
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAV-SNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------KPELT   75 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~L-e~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~~~la   75 (332)
                      +...++.++++|.+++++|++|++..+.+ +..++..   +|.|.||+ ||||+|+|||+|||+..         ...++
T Consensus        92 v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~---~~~i~Vd~~~~ts~~~vya~GD~~~~~~~~~~~~~~~~~a  168 (185)
T d1q1ra1          92 VILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQV---DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESV  168 (185)
T ss_dssp             EEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCB---SSSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSH
T ss_pred             EEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccc---cCccccCCccccchhhhhcchhhhccccccCCcccchhhH
Confidence            55567789999999999999987666544 4456654   45699999 99999999999999741         13578


Q ss_pred             hHHHHHHHHHHHHHhCC
Q psy3825          76 PVAVQAGKLLAARLYGN   92 (332)
Q Consensus        76 ~vA~~qG~vAA~nI~G~   92 (332)
                      +.|.+||+.||+||+|+
T Consensus       169 ~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         169 PNALEQARKIAAILCGK  185 (185)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHccCC
Confidence            99999999999999984

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.6e-13  Score=118.97  Aligned_cols=86  Identities=20%  Similarity=0.301  Sum_probs=70.6

Q ss_pred             eeecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCC--------CCCCchh
Q psy3825           6 GASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLH--------EKPELTP   76 (332)
Q Consensus         6 ~v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~--------g~~~la~   76 (332)
                      .+.+++|+++++|.||+|+|.+|+...| .+..|++++.+.|.|.||+ |||+ |+|||+|||+.        ....+++
T Consensus       115 ~V~l~dG~~i~~d~lViAtG~~~~~~~l-~~~~gl~~~~~~~~i~vd~~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~  192 (213)
T d1m6ia1         115 MVKLNDGSQITYEKCLIATGGTEPNVEL-AKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVEHHD  192 (213)
T ss_dssp             EEEETTSCEEEEEEEEECCCEEEECCTT-HHHHTCCBCTTTCSEECCTTCEEE-TTEEECGGGEEEEETTTEEECCCCHH
T ss_pred             eeeeccceeeccceEEEeeeeecchhhh-hhccchhhhhhhhhhhhhHhcCcC-CceEEeeeeeeeccccCCcEEeeEhH
Confidence            4677889999999999999987665443 3567888753457899999 9998 99999999974        1346788


Q ss_pred             HHHHHHHHHHHHHhCCC
Q psy3825          77 VAVQAGKLLAARLYGNG   93 (332)
Q Consensus        77 vA~~qG~vAA~nI~G~~   93 (332)
                      .|..||++||+||+|..
T Consensus       193 ~A~~~gr~aa~ni~g~~  209 (213)
T d1m6ia1         193 HAVVSGRLAGENMTGAA  209 (213)
T ss_dssp             HHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999865

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.34  E-value=5.1e-13  Score=110.28  Aligned_cols=80  Identities=24%  Similarity=0.356  Sum_probs=65.1

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCC---CCchhHHHHHH
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEK---PELTPVAVQAG   82 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~---~~la~vA~~qG   82 (332)
                      +...++.++++|.++||+|..|+ .+  ++..|++.+  ++ |.||+ +||+.|+|||+|||+...   ...++.|.+||
T Consensus        84 ~~~~~~~~i~~D~li~a~G~~~~-~~--~~~~gl~~~--~~-i~v~~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a  157 (167)
T d1xhca1          84 VVITEKGEVPYDTLVLATGAPNV-DL--ARRSGIHTG--RG-ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQA  157 (167)
T ss_dssp             EEEESSCEEECSEEEECCCEECC-HH--HHHTTCCBS--SS-EECCTTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHH
T ss_pred             cccccccccccceeEEEEEecCC-ch--hhhcCceeC--Cc-eeeccccEecCCCeEEeeecccCCCeEEChHHHHHHHH
Confidence            34455678999999999999765 44  467788875  45 99999 999999999999998421   34678999999


Q ss_pred             HHHHHHHhCC
Q psy3825          83 KLLAARLYGN   92 (332)
Q Consensus        83 ~vAA~nI~G~   92 (332)
                      +.+|+||.|+
T Consensus       158 ~~~a~~i~Ge  167 (167)
T d1xhca1         158 RVLADILKGE  167 (167)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHcCCC
Confidence            9999999874

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.27  E-value=3.3e-12  Score=109.03  Aligned_cols=79  Identities=24%  Similarity=0.344  Sum_probs=63.4

Q ss_pred             CCeeEEEcCEEEEccCcccc--------CccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCC---------C
Q psy3825          10 DKVFEDTYDTVLMAIGRRAL--------TEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHE---------K   71 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PN--------t~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g---------~   71 (332)
                      ++..++++|.+++|+|..|+        +.+  ++ .+++++ ++|+|.||+ |||+.|+|||+|||+..         .
T Consensus        97 g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~--~~-~~~~~~-~~G~i~vd~~~~T~~~~IyA~GD~a~~~~~~~~~~~~  172 (198)
T d1nhpa1          97 GEERVENYDKLIISPGAVPFELDGVRPNTAW--LK-GTLELH-PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVN  172 (198)
T ss_dssp             CCEEEEECSEEEECCCEEECCCCCEEESCGG--GT-TTSCBC-TTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEEC
T ss_pred             ccccccccceeeEeecceeeccccccccccc--cc-ccceec-cCCceecCCcccccccceEEecceeecccccCCCccc
Confidence            44567899999999987654        443  22 367777 799999999 99999999999999841         1


Q ss_pred             CCchhHHHHHHHHHHHHHhCC
Q psy3825          72 PELTPVAVQAGKLLAARLYGN   92 (332)
Q Consensus        72 ~~la~vA~~qG~vAA~nI~G~   92 (332)
                      ..++..|.+||+.||+||.+.
T Consensus       173 ~~~a~~A~~~g~~aa~ni~~~  193 (198)
T d1nhpa1         173 IALATNARKQGRFAVKNLEEP  193 (198)
T ss_dssp             CCCHHHHHHHHHHHHHTSSSC
T ss_pred             ccHHHHHHHHHHHHHHhhCCC
Confidence            246889999999999999764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=5.8e-10  Score=95.24  Aligned_cols=82  Identities=40%  Similarity=0.521  Sum_probs=72.2

Q ss_pred             CCeeEEEcCEEEEccCccc------cCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRA------LTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAG   82 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~P------Nt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG   82 (332)
                      .++..+.++.+++|+|.+|      +++.|+|+..|+.++ ++|.|.+|+ ++|+.|+|||+||+. .+..+++.+.++|
T Consensus       123 ~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~-~~~~i~~d~~~~t~~~~i~~iG~g~-~g~ela~~~~~~G  200 (217)
T d1gesa1         123 VNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTN-EKGYIVVDKYQNTNIEGIYAVGDNT-GAVELTPVAVAAG  200 (217)
T ss_dssp             ETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBC-TTSCBCCCTTSBCSSTTEEECSGGG-TSCCCHHHHHHHH
T ss_pred             CCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEc-CCccEeeCchhccCCCcEEEECCCc-cHHHHHHHHHHHH
Confidence            3457899999999999654      456677888899998 899999999 999999999999999 6888999999999


Q ss_pred             HHHHHHHhCCC
Q psy3825          83 KLLAARLYGNG   93 (332)
Q Consensus        83 ~vAA~nI~G~~   93 (332)
                      +.++++++++.
T Consensus       201 ~~v~~~~~~~~  211 (217)
T d1gesa1         201 RRLSERLFNNK  211 (217)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHhCCC
Confidence            99999999865

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=4.5e-09  Score=89.21  Aligned_cols=76  Identities=28%  Similarity=0.325  Sum_probs=62.2

Q ss_pred             CeeEEEcCEEEEccCc-----cccCccccccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGR-----RALTEETAVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGK   83 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr-----~PNt~~L~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~   83 (332)
                      +..+..+|.+++++|.     .|+++++   +.+++++ ++|+|.+|+  ++||+|+|||+|||.+.....+.+|+.+|.
T Consensus       104 ~~~~~~~~~~~~a~g~~~~g~~p~~~~~---~~~veld-~~G~i~~~~~~~~Ts~~GV~a~GDv~~~~~r~~v~A~g~G~  179 (192)
T d1vdca1         104 DSKAILADAVILAIGAVAKGHEPATKFL---DGGVELD-SDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGC  179 (192)
T ss_dssp             SSEEEEEEEEEECCCEEECCEEESCGGG---TTSSCBC-TTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHH
T ss_pred             cceeeeeeeEEEEeeeeecccCchHHHh---cCceeec-CCCeEEeCCCceEecCCCEEEeeecCCcccceEEEEEechH
Confidence            3457789999999985     5888763   3479999 899999996  899999999999998433456889999999


Q ss_pred             HHHHHHh
Q psy3825          84 LLAARLY   90 (332)
Q Consensus        84 vAA~nI~   90 (332)
                      .||.++.
T Consensus       180 ~aA~~~~  186 (192)
T d1vdca1         180 MAALDAE  186 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998763

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.77  E-value=7.2e-09  Score=83.67  Aligned_cols=83  Identities=18%  Similarity=0.132  Sum_probs=62.0

Q ss_pred             eecCCeeEEEcCEEEEccCccccCcccccccc------CceeecCCCeeecCC--CC-CCCCcEEEecccCCCC--CCch
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEETAVSNA------GVKVIPENAKIDSDN--EQ-TNIPNVFAVGDVLHEK--PELT   75 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L~Le~a------Gl~ld~e~G~I~VDe--lq-TSvpgIYAiGDva~g~--~~la   75 (332)
                      +.+++++++++|.+++|+|.+||+..+.....      |+..+  ++.+.++.  ++ ++.++|||+||++.+.  +..+
T Consensus        87 ~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~~p~~~  164 (186)
T d1fcda1          87 VKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTND--AGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSG  164 (186)
T ss_dssp             EEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCT--TSSEEBCSSSCBBSSSTTEEECTTSEECTTCCSSH
T ss_pred             eecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccc--cccccceeeeeecccccCceEeccccccCCCCchH
Confidence            45567889999999999999999987542221      33343  44555554  44 6899999999998432  4568


Q ss_pred             hHHHHHHHHHHHHHhC
Q psy3825          76 PVAVQAGKLLAARLYG   91 (332)
Q Consensus        76 ~vA~~qG~vAA~nI~G   91 (332)
                      ..|..||+++|+||..
T Consensus       165 ~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         165 YSANSQGKVAAAAVVV  180 (186)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            8999999999999963

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=8.4e-08  Score=80.54  Aligned_cols=74  Identities=28%  Similarity=0.311  Sum_probs=56.8

Q ss_pred             eeEEEcCEEEEccCcccc-----CccccccccCceeecCCCeeecCC------CCCCCCcEEEecccCCCCCCchhHHHH
Q psy3825          12 VFEDTYDTVLMAIGRRAL-----TEETAVSNAGVKVIPENAKIDSDN------EQTNIPNVFAVGDVLHEKPELTPVAVQ   80 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PN-----t~~L~Le~aGl~ld~e~G~I~VDe------lqTSvpgIYAiGDva~g~~~la~vA~~   80 (332)
                      ..++.++.+++++|..|+     ..+  ++ -.++++  +|.|.+|+      ++||+|+|||+|||++.....+.+|..
T Consensus       100 ~~~~~~~~viva~G~~~~~~~~~~~~--~~-~~~e~~--~g~i~~~~~~~~~~~~T~v~gV~aaGDv~~~~~~q~i~Aag  174 (190)
T d1trba1         100 NGEYTCDALIIATGASARYHSPNTAI--FE-GQLELE--NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAG  174 (190)
T ss_dssp             SCEEEEEEEEECCCEEECCEEESCGG--GT-TTSCEE--TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHH
T ss_pred             eeeEeeeeeeeecceeeeeeccccee--ec-ceEecC--CcEEEEecCCcccccccccCeEEEeEEecCcceeEEEEEec
Confidence            346889999999997654     333  22 236775  68899984      589999999999998444567888999


Q ss_pred             HHHHHHHHHh
Q psy3825          81 AGKLLAARLY   90 (332)
Q Consensus        81 qG~vAA~nI~   90 (332)
                      +|..||.++.
T Consensus       175 ~G~~AA~~a~  184 (190)
T d1trba1         175 TGCMAALDAE  184 (190)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9999987653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=5.6e-07  Score=73.97  Aligned_cols=78  Identities=18%  Similarity=0.153  Sum_probs=62.1

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAAR   88 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~n   88 (332)
                      .+..++.++.+++++|..++...  +...++... ..|.|.||+ ++|++|+|||+|||.........+|..+|..+|.+
T Consensus        97 ~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~-~~g~i~v~~~~~t~~~gv~a~gd~~~~~~~~~vva~g~G~~aA~~  173 (184)
T d1fl2a1          97 ASGAVLKARSIIVATGAKLPNTN--WLEGAVERN-RMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLS  173 (184)
T ss_dssp             TTSCEEEEEEEEECCCEEEESCG--GGTTTSCBC-TTSCBCCCTTCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHH
T ss_pred             ecceeeecccccccccccccccc--ccccccccc-ccceeccCCceeeeCCCEEEEeeecCcccCCcEEEEECcHHHHHH
Confidence            44567899999999998877665  344566676 789999999 99999999999999832335678888898888877


Q ss_pred             Hh
Q psy3825          89 LY   90 (332)
Q Consensus        89 I~   90 (332)
                      +.
T Consensus       174 ~~  175 (184)
T d1fl2a1         174 AF  175 (184)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.27  E-value=6.6e-08  Score=85.35  Aligned_cols=106  Identities=19%  Similarity=0.183  Sum_probs=60.2

Q ss_pred             CeeEEEcCEEEEccCccc-----cCccccccccCceeecCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHHHHHHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRA-----LTEETAVSNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVAVQAGKL   84 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~P-----Nt~~L~Le~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~~qG~v   84 (332)
                      +++++++|.||+|||.+|     +.+.++|++.++..+  ++.+.+|+ .+|++.++||+||++ ......+.+..+...
T Consensus       135 ~~~~i~a~~iiIATGs~P~~~~~~~~~~~l~~~~i~ts--~~~~~~d~~~~t~Vig~gaiGdv~-~~~~~~~~~~~~~~~  211 (259)
T d1onfa1         135 NEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETN--NNYIVVDENQRTSVNNIYAVGDCC-MVKKSKEIEDLNLLK  211 (259)
T ss_dssp             -----CBSSEEECCCCCBCCBCCTTTTSSCTTTTCCBS--SSCEEECTTCBCSSSSEEECSTTE-EEC------------
T ss_pred             ceEEEeeeeEEEecCCCCccccccccccccccceeeec--ccccccccCCceeEeeEEEEEEee-ehhhhhhhcchhhHh
Confidence            345799999999999999     788888888888764  67899999 999999999999998 333333333222222


Q ss_pred             HHHHHhCCCCcccccccceEEEEcCceeEEEcCCHHHHH
Q psy3825          85 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAE  123 (332)
Q Consensus        85 AA~nI~G~~~~~~~y~~vP~~vftdPe~AsVGLTEe~a~  123 (332)
                      +..    ...........+..+++.+++..|+.++.+..
T Consensus       212 ~~~----~~~~~~~~~~~~~~~~~~~~~~~V~~~~G~~~  246 (259)
T d1onfa1         212 LYN----EERYLNKKENVTEDIFYNVQLTPVAINAGRLL  246 (259)
T ss_dssp             ----------------------CBCCCCHHHHHHHHHHH
T ss_pred             hhc----CCccccccCCcceEEecCcEEEEEEcccceeE
Confidence            211    11122344556777888899888887765543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.61  E-value=5.8e-06  Score=68.35  Aligned_cols=79  Identities=16%  Similarity=0.242  Sum_probs=50.3

Q ss_pred             CCeeEEEcCEEEEccCccccCccccccccCceee----------cCCCeeecCC-CCCCCCcEEEecccCCCCCCchhHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRALTEETAVSNAGVKVI----------PENAKIDSDN-EQTNIPNVFAVGDVLHEKPELTPVA   78 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl~ld----------~e~G~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA   78 (332)
                      ++++.+++|.|++|++...-... .+...+....          ...+.+.+++ ++|++||||++||+. +++ ....|
T Consensus       278 ~~~~~~~~D~Vi~a~p~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pglf~aGd~~-~g~-~~~~A  354 (373)
T d1seza1         278 RQSEEESFDAVIMTAPLCDVKSM-KIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHR-GGL-SVGKA  354 (373)
T ss_dssp             SCBCCCEESEEEECSCHHHHHTS-EEESSSSBCCCTTSCCCCCTTHHHHHHHHHHHHHHSTTEEECCSSS-SCS-SHHHH
T ss_pred             CCceEEECCEEEECCchHHhhhc-ccccCCCccchhhhccccccCCCcEeecccccCCCCCCEEEEecCC-Cch-hHHHH
Confidence            44667899999999874321110 0000000000          0012244556 789999999999998 444 57889


Q ss_pred             HHHHHHHHHHHhC
Q psy3825          79 VQAGKLLAARLYG   91 (332)
Q Consensus        79 ~~qG~vAA~nI~G   91 (332)
                      +.+|+.||+.|+.
T Consensus       355 ~~~G~~aA~~i~~  367 (373)
T d1seza1         355 LSSGCNAADLVIS  367 (373)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999863

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.86  E-value=0.00027  Score=56.06  Aligned_cols=84  Identities=12%  Similarity=0.064  Sum_probs=54.0

Q ss_pred             eecCCeeEEEcCEEEEccCccccCccc-c----ccccC-ceeecCCCeeecC----C-CCCCCCcEEEecccCCC-CCCc
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRRALTEET-A----VSNAG-VKVIPENAKIDSD----N-EQTNIPNVFAVGDVLHE-KPEL   74 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~PNt~~L-~----Le~aG-l~ld~e~G~I~VD----e-lqTSvpgIYAiGDva~g-~~~l   74 (332)
                      +.+.+++.+++|.+++++........+ .    |.... ..++ ..+.+.++    + ++++.++||++||++.. .+..
T Consensus       245 v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~-~~~~~~~~~~~~~~~~~~~~~v~~~GD~~~~~~~~~  323 (347)
T d1b5qa1         245 VKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGY  323 (347)
T ss_dssp             EEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH-HSCBTTCCHHHHHHHHCCBTTEEECSGGGCSSCTTS
T ss_pred             EEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH-hcCCccccccchhhcccccCCEEEEEccccCcCCCH
Confidence            556788899999999998753321110 0    00000 0012 23333344    3 57889999999999842 3567


Q ss_pred             hhHHHHHHHHHHHHHhC
Q psy3825          75 TPVAVQAGKLLAARLYG   91 (332)
Q Consensus        75 a~vA~~qG~vAA~nI~G   91 (332)
                      ++-|+.+|+.+|+.|++
T Consensus       324 ~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         324 VHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88899999999999874

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.00  E-value=0.0054  Score=49.52  Aligned_cols=74  Identities=23%  Similarity=0.267  Sum_probs=50.6

Q ss_pred             EEcCEEEEccCccccCccc--cccccCceeecCCCeeecCC--CCCCCCcEEEecccCCCCCCchhHHHHHHHHHHHHHh
Q psy3825          15 DTYDTVLMAIGRRALTEET--AVSNAGVKVIPENAKIDSDN--EQTNIPNVFAVGDVLHEKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        15 I~aD~VLvAtGr~PNt~~L--~Le~aGl~ld~e~G~I~VDe--lqTSvpgIYAiGDva~g~~~la~vA~~qG~vAA~nI~   90 (332)
                      ...|.+++++|..+.....  .....+.... ..+...++.  ++|+.+.||+.|||+ +....+..|..+|+.++..+.
T Consensus        91 ~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~vi-gg~~~av~a~~~g~~~a~~v~  168 (196)
T d1gtea4          91 EGYKAAFIGIGLPEVLRDPKVKEALSPIKFN-RWDLPEVDPETMQTSEPWVFAGGDIV-GMANTTVESVNDGKQASWYIH  168 (196)
T ss_dssp             TTCCEEEECCCCCEECCCHHHHHHTTTSCBC-TTSSBCCCTTTCBCSSTTEEECSGGG-CSCCCHHHHHHHHHHHHHHHH
T ss_pred             cccceeeEEeccccCCccccccccccccccc-cccceeccccccCCCccccccccccc-CCcchHHHHHHHHhhhehhHh
Confidence            3478899999965443332  1122223333 345556655  899999999999998 667788888888888877664

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=95.27  E-value=0.014  Score=51.36  Aligned_cols=51  Identities=22%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             CceeecCCCeeecCCCCCCCCcEEEecccCCC---CCCchhHHHHH----HHHHHHHHh
Q psy3825          39 GVKVIPENAKIDSDNEQTNIPNVFAVGDVLHE---KPELTPVAVQA----GKLLAARLY   90 (332)
Q Consensus        39 Gl~ld~e~G~I~VDelqTSvpgIYAiGDva~g---~~~la~vA~~q----G~vAA~nI~   90 (332)
                      ++.++ ..+.+..++.+|.+|++||+|+|+.+   ...+...++.+    |++|+.++.
T Consensus       260 ~~~~~-~~~~~~~~~~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v~g~~ag~~aa  317 (322)
T d1d4ca2         260 GLVID-TKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAA  317 (322)
T ss_dssp             EECCC-TTCEEEBTTTSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             eEEec-CceEEEECCCCCEeCceEEchhhcCCccccccchhhHHHHHHHHHHHHHHHHH
Confidence            34444 44545333367889999999999732   23344444433    777766654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.25  E-value=0.0024  Score=53.70  Aligned_cols=78  Identities=12%  Similarity=0.081  Sum_probs=45.8

Q ss_pred             CCeeEEEcCEEEEccCccc--------cCccccccccCce-eecCCC-eeecCC-CCCCCCcEEEecccCCCCCCchhHH
Q psy3825          10 DKVFEDTYDTVLMAIGRRA--------LTEETAVSNAGVK-VIPENA-KIDSDN-EQTNIPNVFAVGDVLHEKPELTPVA   78 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~P--------Nt~~L~Le~aGl~-ld~e~G-~I~VDe-lqTSvpgIYAiGDva~g~~~la~vA   78 (332)
                      ++++++++|.||+|++...        .......+.  +. +. ..+ ....++ +.++..+||.+||++......+..|
T Consensus       277 ~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~a--i~~~~-~~~~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a  353 (370)
T d2iida1         277 KETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHA--LRSVF-TPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDST  353 (370)
T ss_dssp             SCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHH--HHHCC-CTTHHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHH
T ss_pred             CCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHH--HHhcC-CcccccccchhhhcccCCEEEecccccCCCcccHHH
Confidence            5567899999999986422        111000000  00 00 011 112223 4445567999999884344557889


Q ss_pred             HHHHHHHHHHHh
Q psy3825          79 VQAGKLLAARLY   90 (332)
Q Consensus        79 ~~qG~vAA~nI~   90 (332)
                      +..|..||.+|.
T Consensus       354 ~~sG~~aA~~i~  365 (370)
T d2iida1         354 IKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.02  Score=50.08  Aligned_cols=56  Identities=23%  Similarity=0.374  Sum_probs=42.4

Q ss_pred             eeEEEcCEEEEccCcccc-----------C-ccccc-cccCceeecCCCeeecCC-CCCCCCcEEEecccC
Q psy3825          12 VFEDTYDTVLMAIGRRAL-----------T-EETAV-SNAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVL   68 (332)
Q Consensus        12 g~~I~aD~VLvAtGr~PN-----------t-~~L~L-e~aGl~ld~e~G~I~VDe-lqTSvpgIYAiGDva   68 (332)
                      ...+.++.|++|+|--..           + +.+.+ ..+|.++. +-++|.+|+ .+|+.|++||+|+++
T Consensus       191 ~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA~~aGa~l~-~m~~iq~~~~g~t~~~g~~a~G~~~  260 (305)
T d1chua2         191 VETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVA-NCGGVMVDDHGRTDVEGLYAIGEVS  260 (305)
T ss_dssp             EEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHHHHTTCCEE-CSCEEECCTTCBCSSBTEEECGGGE
T ss_pred             EEEEeecceEEeeeccccceeccCCCCceecccEeeccccceeeE-ecceeEECCcccCCCCCceecccEE
Confidence            456789999999995322           1 11111 24688887 778999999 999999999999985

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.23  E-value=0.0082  Score=49.01  Aligned_cols=75  Identities=12%  Similarity=0.113  Sum_probs=45.9

Q ss_pred             CeeEEEcCEEEEccCccccCccccccccCc-------eeecCCCe---eecCC-CCCCCCcEEEecccCCCCCCchhHHH
Q psy3825          11 KVFEDTYDTVLMAIGRRALTEETAVSNAGV-------KVIPENAK---IDSDN-EQTNIPNVFAVGDVLHEKPELTPVAV   79 (332)
Q Consensus        11 dg~~I~aD~VLvAtGr~PNt~~L~Le~aGl-------~ld~e~G~---I~VDe-lqTSvpgIYAiGDva~g~~~la~vA~   79 (332)
                      +.+++++|.||+|+|......+|  ....-       .+. ..|.   +...+ ..++.|+||++||.. ++. -...++
T Consensus       261 ~~~~~~ad~VV~a~p~~~~~~Ll--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~G~~~-~g~-~~~~~~  335 (347)
T d2ivda1         261 RRAELSVAQVVLAAPAHATAKLL--RPLDDALAALVAGIY-NLGHLERVAAIDAALQRLPGLHLIGNAY-KGV-GLNDCI  335 (347)
T ss_dssp             EEEEEECSEEEECSCHHHHHHHH--TTTCHHHHHHHHTCC-BTTHHHHHHHHHHHHHTSTTEEECSTTT-SCC-SHHHHH
T ss_pred             eEEEEECCEEEECCCHHHHHHhc--cCCCHHHHHHhhcce-ecCcccceecccccccCCCCEEEecccc-cCC-CHHHHH
Confidence            34679999999999853222221  11100       011 1221   22223 347899999999997 333 466789


Q ss_pred             HHHHHHHHHHh
Q psy3825          80 QAGKLLAARLY   90 (332)
Q Consensus        80 ~qG~vAA~nI~   90 (332)
                      ++|+.+|+.|.
T Consensus       336 ~~g~~~a~~~~  346 (347)
T d2ivda1         336 RNAAQLADALV  346 (347)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998874

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=92.93  E-value=0.11  Score=45.00  Aligned_cols=59  Identities=17%  Similarity=0.280  Sum_probs=41.0

Q ss_pred             CCeeEEEcCEEEEccCccccC------------ccccc-cccC-ceeecCCCeeecCC-CCCCCCcEEEecccCC
Q psy3825          10 DKVFEDTYDTVLMAIGRRALT------------EETAV-SNAG-VKVIPENAKIDSDN-EQTNIPNVFAVGDVLH   69 (332)
Q Consensus        10 ~dg~~I~aD~VLvAtGr~PNt------------~~L~L-e~aG-l~ld~e~G~I~VDe-lqTSvpgIYAiGDva~   69 (332)
                      ++..++.++.||+|+|--...            +.+.+ -.+| ..+. +-++|.+|. ++|+.|++|++||+..
T Consensus       202 g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~~~G~~~l~-~~~~iq~~~~~~t~~~gl~a~G~~~~  275 (336)
T d2bs2a2         202 GDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLG-NMGGIRTDYRGEAKLKGLFSAGEAAC  275 (336)
T ss_dssp             CCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTSSSCEE-CCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred             CcEEEEecCeEEEeccccccccccccccccccchhhhhhhhhhhhhhc-cccceeechhhcccCCcceecccccc
Confidence            445678999999999854311            11111 1234 3455 578899999 9999999999999863

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.89  E-value=0.11  Score=42.94  Aligned_cols=83  Identities=14%  Similarity=0.158  Sum_probs=51.6

Q ss_pred             eecCCeeEEEcCEEEEccCcc--ccCcc----cc-ccccCceeecC-CCeeec-----CCC-CCCCCcEEEecccCC---
Q psy3825           7 ASMDKVFEDTYDTVLMAIGRR--ALTEE----TA-VSNAGVKVIPE-NAKIDS-----DNE-QTNIPNVFAVGDVLH---   69 (332)
Q Consensus         7 v~~~dg~~I~aD~VLvAtGr~--PNt~~----L~-Le~aGl~ld~e-~G~I~V-----Del-qTSvpgIYAiGDva~---   69 (332)
                      +.+++++++.+|.||+|+|-.  |.+..    .. ++..|+++.+. .+.+.+     +++ .+..|++|+.|++..   
T Consensus       146 v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~  225 (251)
T d2i0za1         146 VILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHG  225 (251)
T ss_dssp             EEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBC
T ss_pred             EEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccC
Confidence            566778899999999999964  33210    00 23445444310 112222     222 357899999999974   


Q ss_pred             --CCCCchhHHHHHHHHHHHHHh
Q psy3825          70 --EKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        70 --g~~~la~vA~~qG~vAA~nI~   90 (332)
                        +++ ....|...|++++..+.
T Consensus       226 ~~gG~-~~~~a~~~G~~a~~~~~  247 (251)
T d2i0za1         226 YTGGY-NITSALVTGRIAGTTAG  247 (251)
T ss_dssp             CTTTH-HHHHHHHHHHHHHHHHH
T ss_pred             CcchH-HHHHHHHHHHHHHHHHH
Confidence              222 34678889999988773

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.31  E-value=0.18  Score=42.51  Aligned_cols=82  Identities=15%  Similarity=0.153  Sum_probs=50.3

Q ss_pred             cCCeeEEEcCEEEEccCccc--cCc----ccc-ccccCceeec----CCCeeec---CC--CCC-CCCcEEEecccCC--
Q psy3825           9 MDKVFEDTYDTVLMAIGRRA--LTE----ETA-VSNAGVKVIP----ENAKIDS---DN--EQT-NIPNVFAVGDVLH--   69 (332)
Q Consensus         9 ~~dg~~I~aD~VLvAtGr~P--Nt~----~L~-Le~aGl~ld~----e~G~I~V---De--lqT-SvpgIYAiGDva~--   69 (332)
                      ..++.++.+|.||+|+|-..  .+.    ++. +++.|+.+-+    ..|.|.+   |.  |++ .+||+|.+|-+.+  
T Consensus       149 ~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~  228 (253)
T d2gqfa1         149 QVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVT  228 (253)
T ss_dssp             EETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCE
T ss_pred             ecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEee
Confidence            34567899999999999653  221    111 1223333310    1234443   43  665 5899999996664  


Q ss_pred             CC--CCchhHHHHHHHHHHHHHh
Q psy3825          70 EK--PELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        70 g~--~~la~vA~~qG~vAA~nI~   90 (332)
                      +.  --..+.|...|.+|++.|.
T Consensus       229 g~~gg~n~~~a~~s~~~~~~~~~  251 (253)
T d2gqfa1         229 GWLGGYNFQWAWSSAYACALSIS  251 (253)
T ss_dssp             ECTTTHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCEehhhhHhHHHHHHHHHh
Confidence            21  1235789999999998875

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.53  E-value=1.1  Score=38.68  Aligned_cols=37  Identities=19%  Similarity=0.358  Sum_probs=27.7

Q ss_pred             CCCCCCcEEEecccCCC-CCCchhHHHHHHHHHHHHHh
Q psy3825          54 EQTNIPNVFAVGDVLHE-KPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        54 lqTSvpgIYAiGDva~g-~~~la~vA~~qG~vAA~nI~   90 (332)
                      ..|+++++|++||++++ ...+...+...++++++++.
T Consensus       281 ~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~  318 (356)
T d1jnra2         281 RMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAV  318 (356)
T ss_dssp             TBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhcCCccccCccccccccchhHHHHH
Confidence            55789999999998742 23456667778888887765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.16  E-value=0.67  Score=37.10  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             CCCCCCcEEEecccCC-CCCCchhHHHHHHHHHHHHHh
Q psy3825          54 EQTNIPNVFAVGDVLH-EKPELTPVAVQAGKLLAARLY   90 (332)
Q Consensus        54 lqTSvpgIYAiGDva~-g~~~la~vA~~qG~vAA~nI~   90 (332)
                      +++.+++||.+||.++ +.+...+-|+..|..||+.|+
T Consensus       407 ~~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il  444 (449)
T d2dw4a2         407 APQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIA  444 (449)
T ss_dssp             ---CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHH
Confidence            5577899999999874 335678899999999999886