Psyllid ID: psy3840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MQSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDLLF
Secondary Structure (PSIPRED)
cccccccccEEEEccccccEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEccccccEEEEEccccEEEEEEEccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEcccccEEEEEccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccc
Coil and Loop (DISEMBL)
mqssrnngsflatgsydgyariwtsdgslkstlgqhkgpifalkwnkrgnyilsagvdKTTIIWdaasgqceqqfsfhsapaldvdwqsntsfascstdqhihvcklhsdkpvksfeghTRVYYLAMDLLF
Flexible Loop (DISEMBL)
mqssrnngsflatgsyDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKlhsdkpvksfeghTRVYYLAMDLLF
Low Complexity Region (SEG)
MQSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDLLF
Disordered region (IsUnstruct)
*********FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDL**
Disordered Region (DISOPRED)
MQSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDLLF
Disordered Region (DISEMBL)
********SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDLLF
Disordered Region (DISPRO)
*QSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDLLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDLLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q95RJ9	700	F-box-like/WD repeat-cont	yes	N/A	0.854	0.16	0.791	1e-52
O60907	577	F-box-like/WD repeat-cont	yes	N/A	0.862	0.195	0.789	6e-52
Q9QXE7	527	F-box-like/WD repeat-cont	yes	N/A	0.862	0.214	0.789	2e-51
Q4R8H1	569	F-box-like/WD repeat-cont	N/A	N/A	0.862	0.198	0.780	2e-51
Q8BHJ5	514	F-box-like/WD repeat-cont	no	N/A	0.786	0.200	0.780	5e-51
Q6GPC6	522	F-box-like/WD repeat-cont	N/A	N/A	0.862	0.216	0.780	5e-51
Q7SZM9	519	F-box-like/WD repeat-cont	N/A	N/A	0.862	0.217	0.780	5e-51
Q9BZK7	514	F-box-like/WD repeat-cont	no	N/A	0.786	0.200	0.780	6e-51
Q9BQ87	522	F-box-like/WD repeat-cont	no	N/A	0.793	0.199	0.747	2e-49
P38262	535	SIR4-interacting protein	yes	N/A	0.862	0.211	0.296	3e-12

>sp|Q95RJ9|EBI_DROME F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2

 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 104/115 (90%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +GS LATGSYDGYARIW +DG L STLGQHKGPIFALKWNK GNYILSAGVDKTTIIWDA
Sbjct: 421 DGSLLATGSYDGYARIWKTDGRLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDA 480

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
           ++GQC QQF+FHSAPALDVDWQ+N +FASCSTDQ IHVC+L  ++P+K+F+GHT 
Sbjct: 481 STGQCTQQFAFHSAPALDVDWQTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTN 535

F-box-like component of E3 ubiquitin ligase complexes; involved in R7 photoreceptor cell differentiation, cone cell development and neuronal cell cycle control. E3 ubiquitin ligase complexes mediate ubiquitination and subsequent proteasomal degradation of target proteins. Required for specification of R7 photoreceptor cell fate in the eye by participating in the ubiquitination and subsequent proteasomal degradation of Tramtrack (ttk), a general inhibitor of photoreceptor differentiation. Required to block the S phase entry in the peripheral nervous system and central nervous system in a process that does not involve the degradation of ttk. Involved in cone cell development by preventing the transcriptional repression mediated by Su(H) on Dl, probably by participating in a E3 complex that contains sno and mediates the ubiquitination and subsequent proteasomal degradation of some component of the Su(H) repressor complex.
Drosophila melanogaster (taxid: 7227)

>sp|O60907|TBL1X_HUMAN F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3

 Score =  202 bits (513), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 104/114 (91%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           NG+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWN++GNYILSAGVDKTTIIWDA
Sbjct: 299 NGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDA 358

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
            +G+ +QQF FHSAPALDVDWQ+NT+FASCSTD  IHVC+L  D+PVK+F+GHT
Sbjct: 359 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHT 412

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|Q9QXE7|TBL1X_MOUSE F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2

 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 104/114 (91%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GNYILSAGVDKTTIIWDA
Sbjct: 249 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 308

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
            +G+ +QQF FHSAPALDVDWQ+NT+FASCSTD  IHVC+L  D+PVK+F+GHT
Sbjct: 309 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHT 362

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Mus musculus (taxid: 10090)

>sp|Q4R8H1|TBL1X_MACFA F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1

 Score =  200 bits (509), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 103/114 (90%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           NG+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWN++GNYILSAGVDKTTIIWDA
Sbjct: 291 NGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDA 350

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
            +G+ +QQF FHSAPALDVDWQ+N +FASCSTD  IHVC+L  D+PVK+F+GHT
Sbjct: 351 HTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHT 404

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Macaca fascicularis (taxid: 9541)

>sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1

 Score =  199 bits (506), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 8   GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
           G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWDA 
Sbjct: 237 GTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAH 296

Query: 68  SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
           +G+ +QQF FHSAPALDVDWQSN +FASCSTD  IHVCKL  D+P+K+F+GHT 
Sbjct: 297 TGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTN 350

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Mus musculus (taxid: 10090)

>sp|Q6GPC6|TB1RB_XENLA F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-b PE=2 SV=1

 Score =  199 bits (505), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 8   GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
           G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWDA 
Sbjct: 245 GTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAH 304

Query: 68  SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
           +G+ +QQF FHSAPALDVDWQSN +FASCSTD  IHVCKL  D+P+K+F+GHT 
Sbjct: 305 TGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTN 358

F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation.

Xenopus laevis (taxid: 8355)

>sp|Q7SZM9|TB1RA_XENLA F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-a PE=1 SV=1

 Score =  199 bits (505), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 8   GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
           G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWDA 
Sbjct: 242 GTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAH 301

Query: 68  SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
           +G+ +QQF FHSAPALDVDWQSN +FASCSTD  IHVCKL  D+P+K+F+GHT 
Sbjct: 302 TGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTN 355

F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation.

Xenopus laevis (taxid: 8355)

>sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1

 Score =  198 bits (504), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query: 8   GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
           G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWDA 
Sbjct: 237 GTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAH 296

Query: 68  SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
           +G+ +QQF FHSAPALDVDWQSN +FASCSTD  IHVCKL  D+P+K+F+GHT 
Sbjct: 297 TGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTN 350

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Homo sapiens (taxid: 9606)

>sp|Q9BQ87|TBL1Y_HUMAN F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1

 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 101/115 (87%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +G+ LA GSYDG+ARIWT +G+L STLGQHKGPIFALKWNK+GNY+LSAGVDKTTIIWDA
Sbjct: 246 DGTLLAMGSYDGFARIWTENGNLASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDA 305

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
            +G+ +QQF FHSAPALDVDWQ+N +FASCSTD  IHVC+L  D PVK+F+GHT 
Sbjct: 306 HTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTN 360

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|P38262|SIF2_YEAST SIR4-interacting protein SIF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIF2 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 15/128 (11%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +G+ + TG  +G  R+W   G+L + L  H+ PI ++KWNK G +I+S  V+  TI+W+ 
Sbjct: 231 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 290

Query: 67  ASGQCEQQFSF------------HSAP---ALDVDWQSNTSFASCSTDQHIHVCKLHSDK 111
            SG   Q F              HS      +DV+W  +  F        I V ++    
Sbjct: 291 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT 350

Query: 112 PVKSFEGH 119
           P     GH
Sbjct: 351 PTGKLIGH 358

Antagonizes telomeric silencing in yeast. May recruit SIR4 to non-telomeric sites or repression.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
345493508	510	PREDICTED: F-box-like/WD repeat-containi	0.770	0.198	0.894	1e-55
156542769	513	PREDICTED: F-box-like/WD repeat-containi	0.770	0.196	0.894	1e-55
345493512	513	PREDICTED: F-box-like/WD repeat-containi	0.770	0.196	0.894	1e-55
156542771	500	PREDICTED: F-box-like/WD repeat-containi	0.778	0.204	0.886	1e-55
345493510	502	PREDICTED: F-box-like/WD repeat-containi	0.770	0.201	0.894	2e-55
189235571	491	PREDICTED: similar to wd-repeat protein	0.786	0.209	0.894	2e-55
270004371	490	hypothetical protein TcasGA2_TC003706 [T	0.786	0.210	0.894	2e-55
357608721	505	hypothetical protein KGM_15880 [Danaus p	0.854	0.221	0.860	8e-55
242005598	487	conserved hypothetical protein [Pediculu	0.786	0.211	0.877	1e-54
332018581	513	F-box-like/WD repeat-containing protein	0.786	0.200	0.868	3e-54

>gi|345493508|ref|XP_003427086.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Nasonia vitripennis]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 107/114 (93%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +GS LATGSYDGYARIWT+DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 231 DGSLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 290

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           ASGQC QQFSFH APALDVDWQ+NTSFASCSTDQ IHVCKLH DKP+KSF+GHT
Sbjct: 291 ASGQCTQQFSFHLAPALDVDWQTNTSFASCSTDQCIHVCKLHVDKPIKSFQGHT 344

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542769|ref|XP_001602731.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 3 [Nasonia vitripennis]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 107/114 (93%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +GS LATGSYDGYARIWT+DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 234 DGSLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 293

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           ASGQC QQFSFH APALDVDWQ+NTSFASCSTDQ IHVCKLH DKP+KSF+GHT
Sbjct: 294 ASGQCTQQFSFHLAPALDVDWQTNTSFASCSTDQCIHVCKLHVDKPIKSFQGHT 347

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493512|ref|XP_003427087.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Nasonia vitripennis]

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 107/114 (93%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +GS LATGSYDGYARIWT+DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 234 DGSLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 293

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           ASGQC QQFSFH APALDVDWQ+NTSFASCSTDQ IHVCKLH DKP+KSF+GHT
Sbjct: 294 ASGQCTQQFSFHLAPALDVDWQTNTSFASCSTDQCIHVCKLHVDKPIKSFQGHT 347

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542771|ref|XP_001602703.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 2 [Nasonia vitripennis]

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/115 (88%), Positives = 107/115 (93%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +GS LATGSYDGYARIWT+DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 221 DGSLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 280

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
           ASGQC QQFSFH APALDVDWQ+NTSFASCSTDQ IHVCKLH DKP+KSF+GHT 
Sbjct: 281 ASGQCTQQFSFHLAPALDVDWQTNTSFASCSTDQCIHVCKLHVDKPIKSFQGHTN 335

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493510|ref|XP_001602672.2| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 1 [Nasonia vitripennis]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 107/114 (93%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +GS LATGSYDGYARIWT+DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 223 DGSLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 282

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           ASGQC QQFSFH APALDVDWQ+NTSFASCSTDQ IHVCKLH DKP+KSF+GHT
Sbjct: 283 ASGQCTQQFSFHLAPALDVDWQTNTSFASCSTDQCIHVCKLHVDKPIKSFQGHT 336

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235571|ref|XP_001812213.1| PREDICTED: similar to wd-repeat protein [Tribolium castaneum]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 107/114 (93%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +GS LATGSYDGYARIWT+DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 212 DGSLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 271

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           ASGQC QQFSFHSAPALDVDWQ+NTSFASCSTDQ IHVCKL  DKP+KSF+GHT
Sbjct: 272 ASGQCTQQFSFHSAPALDVDWQTNTSFASCSTDQCIHVCKLSLDKPIKSFQGHT 325

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004371|gb|EFA00819.1| hypothetical protein TcasGA2_TC003706 [Tribolium castaneum]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 107/114 (93%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +GS LATGSYDGYARIWT+DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 211 DGSLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 270

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           ASGQC QQFSFHSAPALDVDWQ+NTSFASCSTDQ IHVCKL  DKP+KSF+GHT
Sbjct: 271 ASGQCTQQFSFHSAPALDVDWQTNTSFASCSTDQCIHVCKLSLDKPIKSFQGHT 324

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357608721|gb|EHJ66113.1| hypothetical protein KGM_15880 [Danaus plexippus]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 99/115 (86%), Positives = 108/115 (93%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +G+ LATGSYDGYARIWT+DG+L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 226 DGNLLATGSYDGYARIWTTDGTLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 285

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
           ASGQC QQFSFH+APALDVDWQ+N SFASCSTDQ IHVC+LH DKP+KSF+GHT 
Sbjct: 286 ASGQCTQQFSFHAAPALDVDWQTNNSFASCSTDQCIHVCRLHVDKPIKSFKGHTN 340

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005598|ref|XP_002423651.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506811|gb|EEB10913.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 107/114 (93%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +G+ LATGSYDGYARIW +DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 209 DGTLLATGSYDGYARIWMTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 268

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           ASGQC QQFSFHSAPALDVDWQ+NTSFASCSTDQ IHVCKL+ DKP+KSF+GHT
Sbjct: 269 ASGQCTQQFSFHSAPALDVDWQTNTSFASCSTDQCIHVCKLNVDKPIKSFQGHT 322

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018581|gb|EGI59166.1| F-box-like/WD repeat-containing protein TBL1XR1 [Acromyrmex echinatior]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 99/114 (86%), Positives = 106/114 (92%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +G+ LATGSYDGYARIWT+DG L STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA
Sbjct: 234 DGTLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 293

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
            SGQC QQFSFH APALDVDWQ+NTSFASCSTDQ IHVCKL+ DKP+KSF+GHT
Sbjct: 294 ESGQCTQQFSFHCAPALDVDWQTNTSFASCSTDQCIHVCKLNVDKPIKSFQGHT 347

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
FB|FBgn0263933	700	ebi "ebi" [Drosophila melanoga	0.870	0.162	0.798	3.2e-49
UNIPROTKB|O60907	577	TBL1X "F-box-like/WD repeat-co	0.870	0.197	0.789	4.1e-49
UNIPROTKB|E1BV27	523	TBL1X "Uncharacterized protein	0.877	0.219	0.782	5.2e-49
MGI|MGI:1336172	527	Tbl1x "transducin (beta)-like	0.877	0.218	0.782	5.2e-49
RGD|1563868	527	Tbl1x "transducin (beta)-like	0.877	0.218	0.782	5.2e-49
UNIPROTKB|B7TCI5	528	TBL1X "Transducin beta-like 1"	0.877	0.217	0.782	5.2e-49
UNIPROTKB|Q9BZK7	514	TBL1XR1 "F-box-like/WD repeat-	0.877	0.223	0.773	1.4e-48
UNIPROTKB|F1SGD0	514	TBL1XR1 "Uncharacterized prote	0.877	0.223	0.773	1.4e-48
MGI|MGI:2441730	514	Tbl1xr1 "transducin (beta)-lik	0.877	0.223	0.773	1.4e-48
RGD|1560053	514	Tbl1xr1 "transducin (beta)-lik	0.877	0.223	0.773	1.4e-48

FB|FBgn0263933 ebi "ebi" [Drosophila melanogaster (taxid:7227)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 91/114 (79%), Positives = 104/114 (91%)

Query:     7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
             +GS LATGSYDGYARIW +DG L STLGQHKGPIFALKWNK GNYILSAGVDKTTIIWDA
Sbjct:   421 DGSLLATGSYDGYARIWKTDGRLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDA 480

Query:    67 ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
             ++GQC QQF+FHSAPALDVDWQ+N +FASCSTDQ IHVC+L  ++P+K+F+GHT
Sbjct:   481 STGQCTQQFAFHSAPALDVDWQTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHT 534

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005525 "GTP binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0030162 "regulation of proteolysis" evidence=TAS

GO:0042676 "compound eye cone cell fate commitment" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IGI;IPI

GO:0042461 "photoreceptor cell development" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0031065 "positive regulation of histone deacetylation" evidence=IDA

GO:0070491 "repressing transcription factor binding" evidence=IPI

GO:0001106 "RNA polymerase II transcription corepressor activity" evidence=IPI

GO:0035220 "wing disc development" evidence=IGI;IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IGI;IDA

GO:0005700 "polytene chromosome" evidence=IDA

GO:0045572 "positive regulation of imaginal disc growth" evidence=IGI;IMP

GO:0022416 "chaeta development" evidence=IMP

UNIPROTKB|O60907 TBL1X "F-box-like/WD repeat-containing protein TBL1X" [Homo sapiens (taxid:9606)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 90/114 (78%), Positives = 104/114 (91%)

Query:     7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
             NG+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWN++GNYILSAGVDKTTIIWDA
Sbjct:   299 NGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDA 358

Query:    67 ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
              +G+ +QQF FHSAPALDVDWQ+NT+FASCSTD  IHVC+L  D+PVK+F+GHT
Sbjct:   359 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHT 412

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP

GO:0003714 "transcription corepressor activity" evidence=IGI;IDA

GO:0042393 "histone binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006508 "proteolysis" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E1BV27 TBL1X "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 90/115 (78%), Positives = 105/115 (91%)

Query:     6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             ++G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GNYILSAGVDKTTIIWD
Sbjct:   244 SDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWD 303

Query:    66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
             A +G+ +QQF FHSAPALDVDWQ+NT+FASCSTD  IHVC+L  D+PVK+F+GHT
Sbjct:   304 AHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHT 358

GO:0003682 "chromatin binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:1336172 Tbl1x "transducin (beta)-like 1 X-linked" [Mus musculus (taxid:10090)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 90/115 (78%), Positives = 105/115 (91%)

Query:     6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             ++G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GNYILSAGVDKTTIIWD
Sbjct:   248 SDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWD 307

Query:    66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
             A +G+ +QQF FHSAPALDVDWQ+NT+FASCSTD  IHVC+L  D+PVK+F+GHT
Sbjct:   308 AHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHT 362

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IDA

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0006508 "proteolysis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0043627 "response to estrogen stimulus" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0045444 "fat cell differentiation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0048545 "response to steroid hormone stimulus" evidence=IMP

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

RGD|1563868 Tbl1x "transducin (beta)-like 1 X-linked" [Rattus norvegicus (taxid:10116)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 90/115 (78%), Positives = 105/115 (91%)

Query:     6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             ++G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GNYILSAGVDKTTIIWD
Sbjct:   248 SDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWD 307

Query:    66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
             A +G+ +QQF FHSAPALDVDWQ+NT+FASCSTD  IHVC+L  D+PVK+F+GHT
Sbjct:   308 AHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHT 362

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006508 "proteolysis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0043627 "response to estrogen stimulus" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045444 "fat cell differentiation" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048545 "response to steroid hormone stimulus" evidence=ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

GO:0000118 "histone deacetylase complex" evidence=ISO

UNIPROTKB|B7TCI5 TBL1X "Transducin beta-like 1" [Bos taurus (taxid:9913)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 90/115 (78%), Positives = 105/115 (91%)

Query:     6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             ++G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GNYILSAGVDKTTIIWD
Sbjct:   249 SDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWD 308

Query:    66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
             A +G+ +QQF FHSAPALDVDWQ+NT+FASCSTD  IHVC+L  D+PVK+F+GHT
Sbjct:   309 AHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHT 363

GO:0006508 "proteolysis" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0003714 "transcription corepressor activity" evidence=ISS

GO:0008013 "beta-catenin binding" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0045444 "fat cell differentiation" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|Q9BZK7 TBL1XR1 "F-box-like/WD repeat-containing protein TBL1XR1" [Homo sapiens (taxid:9606)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 89/115 (77%), Positives = 103/115 (89%)

Query:     6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             + G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWD
Sbjct:   235 SEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWD 294

Query:    66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
             A +G+ +QQF FHSAPALDVDWQSN +FASCSTD  IHVCKL  D+P+K+F+GHT
Sbjct:   295 AHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHT 349

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP

GO:0003714 "transcription corepressor activity" evidence=IGI;IDA

GO:0042393 "histone binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1SGD0 TBL1XR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 89/115 (77%), Positives = 103/115 (89%)

Query:     6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             + G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWD
Sbjct:   235 SEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWD 294

Query:    66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
             A +G+ +QQF FHSAPALDVDWQSN +FASCSTD  IHVCKL  D+P+K+F+GHT
Sbjct:   295 AHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHT 349

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

MGI|MGI:2441730 Tbl1xr1 "transducin (beta)-like 1X-linked receptor 1" [Mus musculus (taxid:10090)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 89/115 (77%), Positives = 103/115 (89%)

Query:     6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             + G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWD
Sbjct:   235 SEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWD 294

Query:    66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
             A +G+ +QQF FHSAPALDVDWQSN +FASCSTD  IHVCKL  D+P+K+F+GHT
Sbjct:   295 AHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHT 349

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IC

GO:0005876 "spindle microtubule" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO

RGD|1560053 Tbl1xr1 "transducin (beta)-like 1 X-linked receptor 1" [Rattus norvegicus (taxid:10116)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 89/115 (77%), Positives = 103/115 (89%)

Query:     6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             + G+ LATGSYDG+ARIWT DG+L STLGQHKGPIFALKWNK+GN+ILSAGVDKTTIIWD
Sbjct:   235 SEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWD 294

Query:    66 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
             A +G+ +QQF FHSAPALDVDWQSN +FASCSTD  IHVCKL  D+P+K+F+GHT
Sbjct:   295 AHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHT 349

GO:0000118 "histone deacetylase complex" evidence=IEA;ISO

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=ISO

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0008013 "beta-catenin binding" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0017053 "transcriptional repressor complex" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0047485 "protein N-terminus binding" evidence=IEA;ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QXE7	TBL1X_MOUSE	No assigned EC number	0.7894	0.8625	0.2144	yes	N/A
O60907	TBL1X_HUMAN	No assigned EC number	0.7894	0.8625	0.1958	yes	N/A
Q95RJ9	EBI_DROME	No assigned EC number	0.7913	0.8549	0.16	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	131
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.9 bits (234), Expect = 3e-24
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 3   SSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 61
           ++  +G++LA+GS D   R+W    G    TL  H   + ++ ++  G  + S+  DKT 
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117

Query: 62  IIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT 120
            +WD  +G+C      H+     V +  + +F AS S D  I +  L + K V +  GHT
Sbjct: 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177

Query: 121 R 121
            
Sbjct: 178 G 178

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.2 bits (206), Expect = 3e-20
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 7   NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
           +G+F+A+ S DG  ++W    G   +TL  H G + ++ ++  G  +LS+  D T  +WD
Sbjct: 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205

Query: 66  AASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT-RVY 123
            ++G+C      H      V +  +    AS S D  I V  L + + V++  GHT  V 
Sbjct: 206 LSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265

Query: 124 YLAMD 128
            LA  
Sbjct: 266 SLAWS 270

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 6   NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
            +G  L++ S D   ++W    G   +TL  H   + ++ ++  G ++ S+  D T  +W
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 65  DAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT-RV 122
           D  +G+C    + H+     V +        S S+D  I +  L + K + +  GH   V
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV 222

Query: 123 YYLA 126
             +A
Sbjct: 223 NSVA 226

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 2/118 (1%)

Query: 6   NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
            +G  LATGS DG  ++W    G L  TL  H GP+  +  +  G Y+ S   DKT  +W
Sbjct: 19  PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78

Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHTR 121
           D  +G+C +  + H++    V +  +    +S S D+ I V  + + K + +  GHT 
Sbjct: 79  DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 7   NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
           +G  L + S DG  ++W  S G    TL  H+  + ++ ++  G  + S   D T  +WD
Sbjct: 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD 247

Query: 66  AASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
             +G+C Q  S H+     + W  +    AS S D  I +
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 6e-14
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 29  LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 88
           L+ TL  H G +  + ++  G  + +   D T  +WD  +G+  +    H+ P  DV   
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 89  SN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           ++ T  AS S+D+ I +  L + + V++  GHT
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHT 93

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.6 bits (148), Expect = 3e-12
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 7   NGSFLATGSYDGYARIWT--SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS LA+GS DG  R+W   S  SL  TL  H   + ++ ++  G  + S   D T  +W
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Query: 65  DAASGQCEQQFSF--HSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D  +G+     +   H  P   + +  + S   +  S D  I +  L + KP+K+ EGH+
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371

Query: 121 RVYYLAM 127
            V  ++ 
Sbjct: 372 NVLSVSF 378

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.1 bits (131), Expect = 7e-10
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 4   SRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTT 61
           S +     +  S DG  ++W    G   STL  H  P+ +L ++  G   I S   D T 
Sbjct: 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223

Query: 62  IIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGH 119
            +WD ++G+  +   S HS   +       +  AS S+D  I +  L S    +++  GH
Sbjct: 224 RLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Query: 120 T 120
           +
Sbjct: 284 S 284

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.8 bits (125), Expect = 5e-09
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 10  FLATGSYDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDA 66
            LA+ S DG  ++W  ++ G L  TL  H   + +L ++  G  + S   +D T  +WD 
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKS-FEGHT 120
            +G+     + H+ P   + +  +     AS S+D  I +  L + K ++S   GH+
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 7   NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
           +G  LA+GS DG  R+W    G    TL  H   + +L W+  G  + S   D T  IWD
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 6e-07
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)

Query: 6   NNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKW-NKRGNYILSAG--VDK 59
            +G  L +GS DG  ++W  D     +KS  G H   +  L   +  GN IL A   +D 
Sbjct: 75  PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134

Query: 60  TTIIWDAAS-GQCEQQFSFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSF 116
           T  +WD ++ G+  +    HS     + +  +     +  S D  I +  L + KP+ + 
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194

Query: 117 EGHTR 121
            GHT 
Sbjct: 195 AGHTD 199

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 7e-07
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 4   SRNNGSFLATGSYDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 61
           S + G  +A+GS DG  R+W  ++   L+STL  H   + +  ++  G+ + S   D T 
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265

Query: 62  IIWDAASG-QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKL--HSDKPVKSFE 117
            +WD  S     +  S HS+  L V +  +    AS S+D  + +  L         + +
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 118 GHTRVYY 124
           GH     
Sbjct: 326 GHEGPVS 332

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 1   MQSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT 60
           +  S +    ++ GS DG  R+W           +    + ++ ++  G  + S   D T
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393

Query: 61  TIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSF 116
             +WD ++G   +    H++    +D+     S AS S+D  I +  L +     SF
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 3e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 26 DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
           G L  TL  H GP+ ++ ++  G Y+ S   D T  +WD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 27 GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
          G L  TL  H GP+ ++ ++  GN + S   D T  +WD
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 6   NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
            +G  +++GS DG  R+W  S GSL   L  H   + +L ++  G  + S   D T  +W
Sbjct: 380 PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Query: 65  DAASGQCEQQFS 76
           D  +      FS
Sbjct: 440 DLKTSLKSVSFS 451

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 30  KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFSFHSAPALDVDW 87
              L  H+  I ++ ++  G  +LS   D T  +WD  +G+         H +    +  
Sbjct: 58  SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 88  QSNTS----FASCSTDQHIHVCKLHSD-KPVKSFEGHT 120
            S        AS S D  + +  L +  K +++ EGH+
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS 155

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
KOG0271|consensus	480		99.96
KOG0272|consensus	459		99.96
KOG0272|consensus	459		99.95
KOG0266|consensus	456		99.94
KOG0279|consensus	315		99.94
KOG0271|consensus	480		99.94
KOG0263|consensus	707		99.94
KOG0286|consensus	343		99.94
PTZ00421	493	coronin; Provisional	99.93
KOG0279|consensus	315		99.93
KOG0284|consensus	464		99.93
KOG0263|consensus	707		99.92
KOG0285|consensus	460		99.92
KOG0319|consensus	775		99.92
KOG0266|consensus	456		99.92
KOG0284|consensus	464		99.92
KOG0286|consensus	343		99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0273|consensus	524		99.9
KOG0285|consensus	460		99.9
KOG0273|consensus	524		99.9
KOG0295|consensus	406		99.9
KOG0316|consensus	307		99.89
KOG0275|consensus	508		99.89
KOG0292|consensus	1202		99.89
KOG0282|consensus	503		99.89
KOG0291|consensus	893		99.89
KOG0265|consensus	338		99.88
KOG0276|consensus	794		99.87
KOG0647|consensus	347		99.87
KOG0319|consensus	775		99.87
KOG0315|consensus	311		99.87
KOG0277|consensus	311		99.87
KOG0275|consensus	508		99.87
KOG0645|consensus	312		99.86
KOG0315|consensus	311		99.86
KOG0277|consensus	311		99.86
KOG0318|consensus	603		99.85
KOG0318|consensus	603		99.85
KOG0645|consensus	312		99.85
PLN00181	793	protein SPA1-RELATED; Provisional	99.85
KOG0265|consensus	338		99.85
KOG0302|consensus	440		99.85
KOG0289|consensus	506		99.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.84
KOG0291|consensus	893		99.84
PLN00181	793	protein SPA1-RELATED; Provisional	99.83
KOG0303|consensus	472		99.83
PTZ00421	493	coronin; Provisional	99.83
KOG0310|consensus	487		99.83
KOG0276|consensus	794		99.83
KOG0293|consensus	519		99.83
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.83
KOG0296|consensus	399		99.83
KOG0283|consensus	712		99.82
KOG0295|consensus	406		99.82
KOG0264|consensus	422		99.82
KOG0274|consensus	537		99.82
KOG0292|consensus	1202		99.82
KOG0306|consensus	888		99.82
KOG0269|consensus	839		99.81
PTZ00420	568	coronin; Provisional	99.81
KOG0310|consensus	487		99.81
KOG0264|consensus	422		99.81
KOG0308|consensus	735		99.81
KOG0267|consensus	825		99.8
KOG0283|consensus	712		99.8
KOG0274|consensus	537		99.8
KOG0973|consensus	942		99.8
KOG0646|consensus	476		99.8
KOG0640|consensus	430		99.8
KOG0296|consensus	399		99.8
KOG0643|consensus	327		99.8
KOG0316|consensus	307		99.8
KOG0294|consensus	362		99.79
KOG0269|consensus	839		99.79
KOG0640|consensus	430		99.79
KOG0305|consensus	484		99.79
KOG0289|consensus	506		99.79
KOG1407|consensus	313		99.78
KOG0282|consensus	503		99.78
KOG0313|consensus	423		99.78
KOG0973|consensus	942		99.78
KOG1445|consensus	1012		99.78
KOG0313|consensus	423		99.78
KOG0281|consensus	499		99.78
KOG0306|consensus	888		99.77
KOG0278|consensus	334		99.77
KOG0281|consensus	499		99.77
KOG0270|consensus	463		99.77
KOG0649|consensus	325		99.76
KOG0305|consensus	484		99.76
KOG1034|consensus	385		99.76
KOG0300|consensus	481		99.76
KOG1446|consensus	311		99.76
KOG4283|consensus	397		99.76
KOG0267|consensus	825		99.76
KOG0302|consensus	440		99.76
KOG1273|consensus	405		99.75
KOG0647|consensus	347		99.75
KOG0772|consensus	641		99.75
KOG0641|consensus	350		99.73
KOG0639|consensus	705		99.73
KOG1446|consensus	311		99.73
KOG0301|consensus	745		99.73
KOG0308|consensus	735		99.72
KOG0646|consensus	476		99.72
KOG0643|consensus	327		99.72
KOG0772|consensus	641		99.71
KOG1407|consensus	313		99.71
KOG1332|consensus	299		99.71
KOG1036|consensus	323		99.71
KOG0299|consensus	479		99.71
KOG0641|consensus	350		99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
KOG0301|consensus	745		99.7
KOG1009|consensus	434		99.7
KOG2394|consensus	636		99.68
KOG1539|consensus	910		99.68
KOG0299|consensus	479		99.68
KOG0293|consensus	519		99.68
KOG0294|consensus	362		99.66
KOG4283|consensus	397		99.66
KOG0270|consensus	463		99.65
KOG0649|consensus	325		99.65
KOG0278|consensus	334		99.65
KOG2394|consensus	636		99.65
KOG0639|consensus	705		99.63
KOG4378|consensus	673		99.63
KOG0642|consensus	577		99.62
KOG0288|consensus	459		99.62
KOG0771|consensus	398		99.62
KOG0290|consensus	364		99.62
KOG0300|consensus	481		99.62
KOG0268|consensus	433		99.62
KOG1408|consensus	1080		99.61
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.61
KOG1273|consensus	405		99.61
KOG1274|consensus	933		99.6
KOG2096|consensus	420		99.6
KOG0288|consensus	459		99.6
KOG1036|consensus	323		99.6
KOG2048|consensus	691		99.59
KOG2048|consensus	691		99.59
KOG0307|consensus	1049		99.59
KOG1063|consensus	764		99.59
KOG2110|consensus	391		99.59
KOG1007|consensus	370		99.58
KOG2096|consensus	420		99.57
KOG2445|consensus	361		99.56
KOG0322|consensus	323		99.56
KOG3881|consensus	412		99.56
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.56
KOG0268|consensus	433		99.56
KOG1332|consensus	299		99.56
KOG0321|consensus	720		99.56
KOG2919|consensus	406		99.55
KOG1007|consensus	370		99.55
KOG1539|consensus	910		99.55
KOG1034|consensus	385		99.54
KOG1445|consensus	1012		99.54
KOG0321|consensus	720		99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
KOG4328|consensus	498		99.53
KOG2106|consensus	626		99.52
KOG1009|consensus	434		99.52
KOG0303|consensus	472		99.52
KOG1272|consensus	545		99.51
KOG1310|consensus	758		99.51
KOG1274|consensus	933		99.51
KOG1188|consensus	376		99.5
KOG1524|consensus	737		99.5
KOG4328|consensus	498		99.48
KOG1408|consensus	1080		99.48
KOG0644|consensus	1113		99.47
KOG2110|consensus	391		99.47
KOG2055|consensus	514		99.47
KOG2111|consensus	346		99.46
KOG1272|consensus	545		99.42
KOG1538|consensus	1081		99.42
KOG0974|consensus	967		99.41
KOG2919|consensus	406		99.41
KOG2055|consensus	514		99.41
KOG1063|consensus	764		99.4
COG2319	466	FOG: WD40 repeat [General function prediction only	99.4
KOG4378|consensus	673		99.4
KOG0642|consensus	577		99.39
COG2319	466	FOG: WD40 repeat [General function prediction only	99.39
KOG4227|consensus	609		99.36
KOG0307|consensus	1049		99.35
KOG1963|consensus	792		99.35
KOG1523|consensus	361		99.34
KOG2445|consensus	361		99.33
KOG4547|consensus	541		99.32
KOG1188|consensus	376		99.32
KOG2695|consensus	425		99.32
KOG1524|consensus	737		99.3
KOG0290|consensus	364		99.29
KOG2106|consensus	626		99.28
KOG1517|consensus	1387		99.27
KOG1240|consensus	1431		99.27
KOG0650|consensus	733		99.26
KOG0280|consensus	339		99.26
KOG0644|consensus	1113		99.24
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.24
PRK01742	429	tolB translocation protein TolB; Provisional	99.24
KOG3914|consensus	390		99.23
PRK05137	435	tolB translocation protein TolB; Provisional	99.22
KOG0771|consensus	398		99.22
KOG2139|consensus	445		99.22
KOG1310|consensus	758		99.21
KOG1523|consensus	361		99.2
KOG0322|consensus	323		99.19
KOG0974|consensus	967		99.17
KOG2111|consensus	346		99.17
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.17
KOG2139|consensus	445		99.16
KOG2321|consensus	703		99.15
PRK03629	429	tolB translocation protein TolB; Provisional	99.15
KOG2321|consensus	703		99.14
PRK04922	433	tolB translocation protein TolB; Provisional	99.14
KOG1517|consensus	1387		99.13
KOG0650|consensus	733		99.12
PRK01742	429	tolB translocation protein TolB; Provisional	99.12
COG4946	668	Uncharacterized protein related to the periplasmic	99.11
KOG1587|consensus	555		99.11
KOG0280|consensus	339		99.1
PRK02889	427	tolB translocation protein TolB; Provisional	99.09
PRK01029	428	tolB translocation protein TolB; Provisional	99.08
PRK04922	433	tolB translocation protein TolB; Provisional	99.07
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.07
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.06
KOG1538|consensus	1081		99.06
PRK03629	429	tolB translocation protein TolB; Provisional	99.05
PRK11028	330	6-phosphogluconolactonase; Provisional	99.03
PRK05137	435	tolB translocation protein TolB; Provisional	99.02
PRK00178	430	tolB translocation protein TolB; Provisional	99.02
PRK02889	427	tolB translocation protein TolB; Provisional	99.01
KOG1409|consensus	404		99.01
KOG4532|consensus	344		99.01
KOG4497|consensus	447		99.01
PRK11028	330	6-phosphogluconolactonase; Provisional	99.0
KOG1587|consensus	555		99.0
KOG3881|consensus	412		98.97
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.96
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.95
PRK04792	448	tolB translocation protein TolB; Provisional	98.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.89
KOG2315|consensus	566		98.88
KOG1963|consensus	792		98.86
KOG1240|consensus	1431		98.84
PRK00178	430	tolB translocation protein TolB; Provisional	98.84
KOG3914|consensus	390		98.84
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.82
PRK01029	428	tolB translocation protein TolB; Provisional	98.81
KOG4547|consensus	541		98.79
KOG4227|consensus	609		98.76
PRK04792	448	tolB translocation protein TolB; Provisional	98.73
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.71
KOG4714|consensus	319		98.7
KOG1354|consensus	433		98.69
KOG1064|consensus	2439		98.69
KOG1064|consensus	2439		98.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.66
KOG4714|consensus	319		98.65
KOG4190|consensus	1034		98.61
KOG1409|consensus	404		98.59
KOG2695|consensus	425		98.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.58
KOG1645|consensus	463		98.58
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.56
KOG4640|consensus	665		98.55
KOG3621|consensus	726		98.55
PRK04043	419	tolB translocation protein TolB; Provisional	98.54
KOG4640|consensus	665		98.5
KOG2066|consensus	846		98.48
KOG0309|consensus	1081		98.42
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.41
KOG1334|consensus	559		98.4
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.38
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.37
KOG1334|consensus	559		98.35
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.34
KOG2041|consensus	1189		98.33
KOG4532|consensus	344		98.32
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.32
KOG1354|consensus	433		98.3
PRK04043	419	tolB translocation protein TolB; Provisional	98.3
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.3
KOG2314|consensus	698		98.29
KOG1912|consensus	1062		98.28
KOG4497|consensus	447		98.22
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.22
KOG1275|consensus	1118		98.21
KOG3617|consensus	1416		98.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.19
KOG2315|consensus	566		98.19
KOG2444|consensus	238		98.13
KOG2079|consensus	1206		98.12
KOG0309|consensus	1081		98.12
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.11
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.1
KOG2066|consensus	846		98.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.06
PRK02888	635	nitrous-oxide reductase; Validated	98.03
KOG4190|consensus	1034		98.02
KOG1832|consensus	1516		97.96
COG4946	668	Uncharacterized protein related to the periplasmic	97.96
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.94
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.9
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.9
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.87
KOG1912|consensus	1062		97.86
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.84
KOG0882|consensus	558		97.83
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.83
KOG4649|consensus	354		97.82
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.81
KOG1275|consensus	1118		97.81
KOG2114|consensus	933		97.77
KOG4649|consensus	354		97.77
KOG1645|consensus	463		97.75
KOG2314|consensus	698		97.65
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.64
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.63
KOG1920|consensus	1265		97.6
PRK02888	635	nitrous-oxide reductase; Validated	97.5
KOG1008|consensus	783		97.5
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.4
KOG1008|consensus	783		97.39
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.38
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.37
KOG2041|consensus	1189		97.36
KOG2114|consensus	933		97.36
KOG2079|consensus	1206		97.28
PRK13616	591	lipoprotein LpqB; Provisional	97.28
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.23
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.23
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.23
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.21
KOG1832|consensus	1516		97.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	97.18
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.14
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.09
KOG2395|consensus	644		97.01
PRK13616	591	lipoprotein LpqB; Provisional	96.98
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.98
KOG3617|consensus	1416		96.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.94
KOG0882|consensus	558		96.9
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.9
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.87
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.87
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.84
COG3391	381	Uncharacterized conserved protein [Function unknow	96.82
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.79
KOG3621|consensus	726		96.75
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.68
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.6
COG3391	381	Uncharacterized conserved protein [Function unknow	96.5
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.4
KOG2444|consensus	238		96.3
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.28
KOG4499|consensus	310		96.28
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.27
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.15
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.14
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.12
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.05
KOG1920|consensus	1265		96.02
KOG1916|consensus	1283		95.94
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.86
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.84
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.81
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.73
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.72
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.65
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.59
KOG1916|consensus	1283		95.34
KOG4499|consensus	310		95.32
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.16
PHA02713	557	hypothetical protein; Provisional	94.76
KOG3630|consensus	1405		94.76
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.71
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.68
KOG2395|consensus	644		94.62
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.61
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.54
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.49
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	94.42
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.32
KOG2247|consensus	615		94.14
KOG2377|consensus	657		94.14
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.13
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.0
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.76
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.76
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.51
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.48
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.27
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	93.26
KOG2247|consensus	615		93.16
COG5167	776	VID27 Protein involved in vacuole import and degra	93.02
PHA02713	557	hypothetical protein; Provisional	92.82
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.61
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.43
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.28
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.21
COG5167	776	VID27 Protein involved in vacuole import and degra	92.1
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.04
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.58
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	91.37
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.29
COG4590	733	ABC-type uncharacterized transport system, permeas	91.27
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.07
KOG4441|consensus	571		90.98
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.82
KOG3630|consensus	1405		90.81
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	90.4
PHA03098	534	kelch-like protein; Provisional	90.15
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.09
KOG3616|consensus	1636		90.05
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.95
KOG4460|consensus	741		89.87
PRK13684	334	Ycf48-like protein; Provisional	89.85
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.58
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	89.49
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	89.44
KOG2377|consensus	657		89.29
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.61
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	88.41
KOG3616|consensus	1636		88.12
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	87.52
KOG4441|consensus	571		87.48
KOG2280|consensus	829		87.03
PHA03098	534	kelch-like protein; Provisional	87.02
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.99
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.11
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.02
PRK10115	686	protease 2; Provisional	85.27
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	85.1
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	84.28
KOG4460|consensus	741		84.21
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	84.02
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	82.41
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	82.12
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.85
PHA02790	480	Kelch-like protein; Provisional	81.64
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	81.6

>KOG0271|consensus

Probab=99.96  E-value=1e-28  Score=154.27  Aligned_cols=124  Identities=26%  Similarity=0.381  Sum_probs=114.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee-eeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE-QQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~-~~~~~~~~   80 (131)
                      .|+|++..|++|+.|.++|+||+. ..+..+.++|...|.|++|+|||+.+++|+.||+|++||..+++.+ ..+.+|..
T Consensus       122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K  201 (480)
T KOG0271|consen  122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK  201 (480)
T ss_pred             EecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccc
Confidence            589999999999999999999998 7788899999999999999999999999999999999999998765 67889999


Q ss_pred             CeEEEEEcC-----CCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          81 PALDVDWQS-----NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        81 ~v~~~~~~~-----~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .|++++|.|     +.+ +++++.||.++|||+..+.++..+.+|...++++
T Consensus       202 ~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv  253 (480)
T KOG0271|consen  202 WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV  253 (480)
T ss_pred             ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence            999999976     334 8999999999999999999999999999998876

>KOG0272|consensus

Probab=99.96  E-value=3.7e-29  Score=157.30  Aligned_cols=123  Identities=23%  Similarity=0.402  Sum_probs=115.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|+|++|++++.|.+-++||+. +..+....+|...|.+++|+|+|.++++|+.|..-++||+++++++..+.+|..+
T Consensus       268 afHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~  347 (459)
T KOG0272|consen  268 AFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE  347 (459)
T ss_pred             eecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccc
Confidence            589999999999999999999998 6666777899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      |.++.|+|+|. +++|+.|++++|||++..+++.++.+|.+.|..
T Consensus       348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~  392 (459)
T KOG0272|consen  348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQ  392 (459)
T ss_pred             eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhh
Confidence            99999999998 999999999999999999999999999876643

>KOG0272|consensus

Probab=99.95  E-value=5.2e-27  Score=147.71  Aligned_cols=123  Identities=22%  Similarity=0.357  Sum_probs=116.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|.+||..+++|+-|..-++||+. ++.+..+.+|..+|..|+|+|+|-.+++|+.|+++++||++....+..+..|...
T Consensus       310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             EecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence            589999999999999999999998 9999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          82 ALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      |+.++|+|+ |. |++++.|++++||..++++++.++.+|.+.|.+
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s  435 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS  435 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence            999999995 66 899999999999999999999999999887644

>KOG0266|consensus

Probab=99.94  E-value=8.3e-26  Score=149.69  Aligned_cols=120  Identities=28%  Similarity=0.448  Sum_probs=110.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      .|+|+++++++++.|++|++||+.  +..++++.+|...|.+++|+|+++.+++|+.|++|++||++++++...+..|..
T Consensus       210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~  289 (456)
T KOG0266|consen  210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD  289 (456)
T ss_pred             EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence            589999999999999999999994  578899999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe--eeEEEecccce
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTRV  122 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~  122 (131)
                      .+.+++|++++. +++++.|+.|++||+.++.  ++..+..+...
T Consensus       290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~  334 (456)
T KOG0266|consen  290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS  334 (456)
T ss_pred             ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence            999999999987 8888889999999999998  56677666655

>KOG0279|consensus

Probab=99.94  E-value=7.2e-26  Score=136.39  Aligned_cols=127  Identities=23%  Similarity=0.291  Sum_probs=112.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccc--cccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQH--KGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      ++++|+..+++|+.|.+|.+||+.+.+..+...+  .+.|.|+.|+|+  ...+++++.|+++++||+++-+....+.+|
T Consensus       112 a~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh  191 (315)
T KOG0279|consen  112 AFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH  191 (315)
T ss_pred             EecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc
Confidence            5899999999999999999999988777666554  789999999996  789999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEeee
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDL  129 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  129 (131)
                      .+.++.+.++|||. .++|+.||.+.+||++.++.+.++.+.......+|++
T Consensus       192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp  243 (315)
T KOG0279|consen  192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP  243 (315)
T ss_pred             cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC
Confidence            99999999999988 7899999999999999999998887666555555543

>KOG0271|consensus

Probab=99.94  E-value=1.6e-26  Score=144.56  Aligned_cols=124  Identities=28%  Similarity=0.438  Sum_probs=113.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNK-----RGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~-----~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      +|+|||..||+|+.||+|++||.+  +..-..+.+|...|++++|.|     ..+++++++.||.++|||+..+.++..+
T Consensus       164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l  243 (480)
T KOG0271|consen  164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL  243 (480)
T ss_pred             EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe
Confidence            589999999999999999999976  444567899999999999976     5678999999999999999999999999


Q ss_pred             ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          76 SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .+|..+|+|++|-.++.+++++.|++|++|+...|.+.+.+++|..-++.+
T Consensus       244 sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~l  294 (480)
T KOG0271|consen  244 SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHL  294 (480)
T ss_pred             ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeee
Confidence            999999999999989999999999999999999999999999998876543

>KOG0263|consensus

Probab=99.94  E-value=2e-26  Score=153.55  Aligned_cols=124  Identities=25%  Similarity=0.452  Sum_probs=116.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|+|.|-++|+++.|++.++|... ..+.+.+.+|...+.|+.|+|+..++++|+.|.++++||..+|..++.+.+|..+
T Consensus       500 ~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~  579 (707)
T KOG0263|consen  500 QFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP  579 (707)
T ss_pred             EecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence            478999999999999999999987 7788889999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |.+++|+|+|+ |++|+.|+.|.+||+.++..+..+.+|.+.++++
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl  625 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL  625 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE
Confidence            99999999998 8999999999999999999999999997766543

>KOG0286|consensus

Probab=99.94  E-value=1.1e-25  Score=136.41  Aligned_cols=124  Identities=27%  Similarity=0.492  Sum_probs=113.4

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD   84 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~   84 (131)
                      +...|++++.|.+.-+||++ ++.+..+.+|.+.|.++.++| +++.+++|+-|+..++||++.+.+++.|.+|...|++
T Consensus       155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINs  234 (343)
T KOG0286|consen  155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINS  234 (343)
T ss_pred             CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccce
Confidence            36778888999999999998 888999999999999999999 9999999999999999999999999999999999999


Q ss_pred             EEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEeeecC
Q psy3840          85 VDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDLLF  131 (131)
Q Consensus        85 ~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~f  131 (131)
                      ++|.|+|. +++|++|++.++||+|..+.+..++ |...+..+.++.|
T Consensus       235 v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~gitSv~F  281 (343)
T KOG0286|consen  235 VRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDSIICGITSVAF  281 (343)
T ss_pred             EEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCcccCCceeEEE
Confidence            99999987 9999999999999999999999988 5556666666554

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=2.2e-24  Score=143.42  Aligned_cols=120  Identities=22%  Similarity=0.335  Sum_probs=107.3

Q ss_pred             cccC-CCCEEEEEeCCCeEEEEcCCC--------CceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCccee
Q psy3840           3 SSRN-NGSFLATGSYDGYARIWTSDG--------SLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~-~~~~l~~~~~d~~i~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~   72 (131)
                      .|+| ++++|++|+.|++|++||+..        ..+..+.+|...|.+++|+|++ .++++++.|+.|++||+++++.+
T Consensus        82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~  161 (493)
T PTZ00421         82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV  161 (493)
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE
Confidence            4777 789999999999999999862        3466788999999999999975 79999999999999999999988


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      ..+..|...|.+++|+|++. +++++.|+.|++||+++++.+.++.+|...
T Consensus       162 ~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~  212 (493)
T PTZ00421        162 EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA  212 (493)
T ss_pred             EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence            88888889999999999987 899999999999999999998888888653

>KOG0279|consensus

Probab=99.93  E-value=1.9e-24  Score=130.32  Aligned_cols=122  Identities=20%  Similarity=0.331  Sum_probs=107.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC--CC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SA   80 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~--~~   80 (131)
                      .++++++.++++.|+++++||+. ++....+.+|...|.+++|+|+.+++++|+.|.+|++|+..... ..++...  +.
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~  149 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHRE  149 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcC
Confidence            57899999999999999999988 68889999999999999999999999999999999999976543 3444433  67


Q ss_pred             CeEEEEEcCCC--c-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          81 PALDVDWQSNT--S-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        81 ~v~~~~~~~~~--~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      -|.++.|+|+.  - +++++.|+.+++||+++.+....+.+|.+.++.+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~  198 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV  198 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence            79999999973  2 8999999999999999999999999998877544

>KOG0284|consensus

Probab=99.93  E-value=1.5e-25  Score=140.88  Aligned_cols=124  Identities=24%  Similarity=0.366  Sum_probs=115.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|+...+++++.||+|+|||.. .+....+.+|...+.+++|+|.-.+++++++|..|++||.+++.++.++..|+..
T Consensus       187 afSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt  266 (464)
T KOG0284|consen  187 AFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT  266 (464)
T ss_pred             ccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce
Confidence            689999999999999999999976 6677778999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |..+.|++++. |++++.|..++++|+++.+.+..+++|...+..+
T Consensus       267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~  312 (464)
T KOG0284|consen  267 VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL  312 (464)
T ss_pred             EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee
Confidence            99999999977 8999999999999999999999999888776554

>KOG0263|consensus

Probab=99.92  E-value=1.2e-24  Score=145.13  Aligned_cols=124  Identities=23%  Similarity=0.390  Sum_probs=116.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|+|+.++|++++.|+++|+|.+. ...+..+++|..||+.+.|+|-|-++++++.|++.++|......+++.+.+|...
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD  537 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD  537 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence            589999999999999999999987 6677788899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |.|+.|+|+.. +++|+.|.++++||..+|..++.+.+|..++..+
T Consensus       538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al  583 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL  583 (707)
T ss_pred             cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence            99999999976 8999999999999999999999999999887543

>KOG0285|consensus

Probab=99.92  E-value=3.5e-24  Score=133.27  Aligned_cols=126  Identities=26%  Similarity=0.384  Sum_probs=117.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      ++.|.++++++|+.|+++.|||+. |+...++.+|...+..+++++...++++++.|+.++.||+...+.++.+.+|-..
T Consensus       158 avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~  237 (460)
T KOG0285|consen  158 AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG  237 (460)
T ss_pred             eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce
Confidence            357889999999999999999987 7888889999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCC-cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEee
Q psy3840          82 ALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMD  128 (131)
Q Consensus        82 v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  128 (131)
                      |.+++.+|.- .+++++.|..+++||+|+...+..+.+|...+..++.
T Consensus       238 V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  238 VYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC  285 (460)
T ss_pred             eEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence            9999999974 5999999999999999999999999999998877654

>KOG0319|consensus

Probab=99.92  E-value=2.8e-24  Score=143.03  Aligned_cols=124  Identities=22%  Similarity=0.397  Sum_probs=116.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +++|+..++++|+.|.+.++|+++ .....++.+|...++++.|+|..+.+++++.|.++++|.+.+..++.++.+|...
T Consensus       470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a  549 (775)
T KOG0319|consen  470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA  549 (775)
T ss_pred             EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce
Confidence            468999999999999999999987 6778899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |....|-.++. +++++.||.+++|++++++|+.++..|...+...
T Consensus       550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL  595 (775)
T KOG0319|consen  550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWAL  595 (775)
T ss_pred             eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEE
Confidence            99999988766 9999999999999999999999999998877554

>KOG0266|consensus

Probab=99.92  E-value=3.3e-23  Score=137.45  Aligned_cols=124  Identities=26%  Similarity=0.402  Sum_probs=113.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CC--ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCcceeeeeecC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GS--LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA-ASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~--~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~-~~~~~~~~~~~~   78 (131)
                      .|+++|+.+++++.++.+++|+.. .+  ....+.+|...|..++|+|+++++++++.|+++++||+ ..+..++++.+|
T Consensus       166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH  245 (456)
T KOG0266|consen  166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH  245 (456)
T ss_pred             EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC
Confidence            478999999999999999999985 44  56667889999999999999999999999999999999 456888999999


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ...+++++|+|+++ +++|+.|++|++||+++++++..+.+|...+..+
T Consensus       246 ~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~  294 (456)
T KOG0266|consen  246 STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL  294 (456)
T ss_pred             CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence            99999999999986 8999999999999999999999999999877644

>KOG0284|consensus

Probab=99.92  E-value=1.3e-24  Score=136.72  Aligned_cols=123  Identities=21%  Similarity=0.345  Sum_probs=112.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeeccccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|++++.++++|+.+|.|++|+.+...+..++.|. ..|++++|+|+...+++++.||+|+|||....+.-..+.+|.-.
T Consensus       145 ~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd  224 (464)
T KOG0284|consen  145 KWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD  224 (464)
T ss_pred             EEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC
Confidence            37889999999999999999999877777777766 89999999999999999999999999999998888888999999


Q ss_pred             eEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          82 ALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      |.+++|+|. +.+++++.|..|++||.+++.++.++..|...+..
T Consensus       225 VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~  269 (464)
T KOG0284|consen  225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLA  269 (464)
T ss_pred             cceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEE
Confidence            999999998 55899999999999999999999999988876643

>KOG0286|consensus

Probab=99.91  E-value=3.3e-23  Score=125.83  Aligned_cols=123  Identities=24%  Similarity=0.408  Sum_probs=112.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-------CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      +|+|+++++|+|+-|+...+|+++.       +..+.+.+|++.+.|+.|-+ ...+++++.|.++.+||+++++.+..+
T Consensus       104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f  182 (343)
T KOG0286|consen  104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVF  182 (343)
T ss_pred             EECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEe
Confidence            5899999999999999999999871       34567889999999999987 667899999999999999999999999


Q ss_pred             ecCCCCeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          76 SFHSAPALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        76 ~~~~~~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .+|.+.|.+++++| +++ +++|+.|+..++||+|.+.+.+++.+|...++.+
T Consensus       183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv  235 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSV  235 (343)
T ss_pred             cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceE
Confidence            99999999999999 555 9999999999999999999999999999887654

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=2e-22  Score=135.34  Aligned_cols=119  Identities=23%  Similarity=0.379  Sum_probs=101.4

Q ss_pred             cccCC-CCEEEEEeCCCeEEEEcCC-CC--------ceeecccccccEEEEEEcCCCCE-EEEEeCCCcEEEEECCCcce
Q psy3840           3 SSRNN-GSFLATGSYDGYARIWTSD-GS--------LKSTLGQHKGPIFALKWNKRGNY-ILSAGVDKTTIIWDAASGQC   71 (131)
Q Consensus         3 ~~~~~-~~~l~~~~~d~~i~~~~~~-~~--------~~~~~~~~~~~i~~~~~~~~~~~-~~s~~~d~~i~~~d~~~~~~   71 (131)
                      +|+|+ +++|++|+.|++|++||+. +.        ++..+.+|...|.+++|+|++.. +++++.|+.+++||+++++.
T Consensus        81 afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~  160 (568)
T PTZ00420         81 QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR  160 (568)
T ss_pred             EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            46775 7899999999999999986 21        23456789999999999998875 57899999999999999887


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      +..+. +...+.+++|+|++. +++++.|+.|++||+++++.+.++.+|.+.
T Consensus       161 ~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~  211 (568)
T PTZ00420        161 AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG  211 (568)
T ss_pred             EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence            76665 457899999999987 777888999999999999999999888764

>KOG0273|consensus

Probab=99.90  E-value=8e-23  Score=130.62  Aligned_cols=124  Identities=48%  Similarity=0.845  Sum_probs=110.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc------------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ------------   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~------------   70 (131)
                      +|+.+|..|++|+.||.+++|+..|..+.++..|.+||.+++|+.+|.++++++.|+++.+||..++.            
T Consensus       242 ~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~  321 (524)
T KOG0273|consen  242 DWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA  321 (524)
T ss_pred             EecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence            58899999999999999999999999999999999999999999999999999999999999996653            


Q ss_pred             -----------------------------eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          71 -----------------------------CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        71 -----------------------------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                                                   ++.++.+|.++|.++.|+|.+. |++++.|++++||+.........+..|.
T Consensus       322 lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs  401 (524)
T KOG0273|consen  322 LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS  401 (524)
T ss_pred             cceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence                                         2233457889999999999988 8999999999999988888888888887


Q ss_pred             ceEEEE
Q psy3840         121 RVYYLA  126 (131)
Q Consensus       121 ~~~~~~  126 (131)
                      ..++.+
T Consensus       402 kei~t~  407 (524)
T KOG0273|consen  402 KEIYTI  407 (524)
T ss_pred             cceeeE
Confidence            665544

>KOG0285|consensus

Probab=99.90  E-value=1.7e-22  Score=125.87  Aligned_cols=122  Identities=16%  Similarity=0.310  Sum_probs=112.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      ++|+-..++++++.|+.|+.||+. .+.++.+.+|-..|.+++.+|.-..+++++.|.++++||+++...+..+.+|..+
T Consensus       200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~  279 (460)
T KOG0285|consen  200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP  279 (460)
T ss_pred             eecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence            467788999999999999999998 7788899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcC-CCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          82 ALDVDWQS-NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        82 v~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      |.++.+.| +.++++|+.|++|++||++.++...++..|...+.
T Consensus       280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr  323 (460)
T KOG0285|consen  280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR  323 (460)
T ss_pred             ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceee
Confidence            99999987 57799999999999999999998888887776553

>KOG0273|consensus

Probab=99.90  E-value=2.7e-22  Score=128.20  Aligned_cols=121  Identities=31%  Similarity=0.516  Sum_probs=110.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC---------CEEEEEeCCCcEEEEECCCccee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG---------NYILSAGVDKTTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---------~~~~s~~~d~~i~~~d~~~~~~~   72 (131)
                      .|+|.+.+|++++.|+++++|+.. ......+..|...|..+.|+|.+         ..+++++.|+++++||+..+.++
T Consensus       366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i  445 (524)
T KOG0273|consen  366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI  445 (524)
T ss_pred             EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence            378999999999999999999965 77888899999999999999854         36899999999999999999999


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      ..+..|..+|++++|+|+++ +++|+.|+.|.+|++++++.++.+.+.....
T Consensus       446 ~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~If  497 (524)
T KOG0273|consen  446 HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIF  497 (524)
T ss_pred             EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEE
Confidence            99999999999999999988 8999999999999999999999988766533

>KOG0295|consensus

Probab=99.90  E-value=2.1e-22  Score=125.24  Aligned_cols=122  Identities=25%  Similarity=0.457  Sum_probs=110.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCC---------------CCEEEEEeCCCcEEEEECC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKR---------------GNYILSAGVDKTTIIWDAA   67 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~s~~~d~~i~~~d~~   67 (131)
                      .+.||.++++++.|.++++|-+. +.+...+..|+-++.+++|.|.               ++.+.+++.|++|++||+.
T Consensus       243 v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~  322 (406)
T KOG0295|consen  243 VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS  322 (406)
T ss_pred             ecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc
Confidence            46789999999999999999987 6677788899999999999763               2478899999999999999


Q ss_pred             CcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          68 SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        68 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      ++.++.++.+|..-|..++|+|.|+ |+++.+|+++++||+++++++.++..|+..++.
T Consensus       323 tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~  381 (406)
T KOG0295|consen  323 TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS  381 (406)
T ss_pred             CCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence            9999999999999999999999999 899999999999999999999999988876543

>KOG0316|consensus

Probab=99.89  E-value=2.3e-22  Score=119.32  Aligned_cols=114  Identities=24%  Similarity=0.413  Sum_probs=105.6

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      |+-+|++.++++.|.+|++||.. +..++++.+|...|..++.+.+...+++++.|..+.+||+.+|+..+.+.+|...|
T Consensus        25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqV  104 (307)
T KOG0316|consen   25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQV  104 (307)
T ss_pred             EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccccee
Confidence            67899999999999999999965 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCC--eeeEEEe
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSD--KPVKSFE  117 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~--~~~~~~~  117 (131)
                      +.++|+.+.. +++|+-|..+++||.|+.  ++++.+.
T Consensus       105 NtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild  142 (307)
T KOG0316|consen  105 NTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD  142 (307)
T ss_pred             eEEEecCcceEEEeccccceeEEEEcccCCCCccchhh
Confidence            9999998866 899999999999999864  6666654

>KOG0275|consensus

Probab=99.89  E-value=7.8e-24  Score=130.88  Aligned_cols=124  Identities=24%  Similarity=0.500  Sum_probs=110.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceee--------cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKST--------LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~--------~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~   73 (131)
                      -|+|||+++++|+.||.|.+||.. |+....        +--++.+|.|+.|+.+...+++|+.||.|++|.+++|.+++
T Consensus       220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR  299 (508)
T KOG0275|consen  220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR  299 (508)
T ss_pred             eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH
Confidence            489999999999999999999975 544332        22367899999999999999999999999999999999999


Q ss_pred             eee-cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          74 QFS-FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        74 ~~~-~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .+. .|...|+++.|+.|+. +++++.|..+++.-+++|+++..+.+|...++-+
T Consensus       300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a  354 (508)
T KOG0275|consen  300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA  354 (508)
T ss_pred             HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence            987 7889999999999865 9999999999999999999999999998877543

>KOG0292|consensus

Probab=99.89  E-value=2.5e-22  Score=136.69  Aligned_cols=124  Identities=21%  Similarity=0.356  Sum_probs=117.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|....++++-.+|.|++||.. +..+..+..|+++|+.++|+|++..++||+.|-.|++|+..+.+++.++.+|-+-
T Consensus        16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY   95 (1202)
T KOG0292|consen   16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY   95 (1202)
T ss_pred             ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce
Confidence            689999999999999999999998 8889999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |..+.|+++-- ++++++|.+|+||+..+..++..+.+|...+.++
T Consensus        96 VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcA  141 (1202)
T KOG0292|consen   96 VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCA  141 (1202)
T ss_pred             eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEee
Confidence            99999999865 8999999999999999999999999999887554

>KOG0282|consensus

Probab=99.89  E-value=2.4e-23  Score=133.16  Aligned_cols=124  Identities=23%  Similarity=0.425  Sum_probs=111.1

Q ss_pred             ccccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           2 QSSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         2 ~~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      ++|...+.+|++++.|+.|+||++.  +++++++.+|..+|..++|+++|..+++++.|+.+++||.++|+++..+.. .
T Consensus       221 ~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~  299 (503)
T KOG0282|consen  221 QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-D  299 (503)
T ss_pred             hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-C
Confidence            4556689999999999999999975  889999999999999999999999999999999999999999999988875 4


Q ss_pred             CCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          80 APALDVDWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        80 ~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ..+.++.|+|++ . +++|+.|+.|+.||+|+++.++++..|-+.+..+
T Consensus       300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i  348 (503)
T KOG0282|consen  300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDI  348 (503)
T ss_pred             CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeee
Confidence            578999999986 3 8999999999999999999998888777665443

>KOG0291|consensus

Probab=99.89  E-value=1.1e-21  Score=131.52  Aligned_cols=123  Identities=22%  Similarity=0.362  Sum_probs=110.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-C
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-A   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-~   80 (131)
                      +++|||+++++|+.||.|++||.. +-+..++..|+..++.+.|+..++.+++.+-||+++.||+...+..+++.... .
T Consensus       357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~  436 (893)
T KOG0291|consen  357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI  436 (893)
T ss_pred             EECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce
Confidence            589999999999999999999987 88999999999999999999999999999999999999999999988887643 3


Q ss_pred             CeEEEEEcCCCcE-EEEeCCC-cEEEEeCCCCeeeEEEecccceEEE
Q psy3840          81 PALDVDWQSNTSF-ASCSTDQ-HIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        81 ~v~~~~~~~~~~~-~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      ...+++..|.|.+ .+|+.|. .|.+|++++|+.+..+++|.+++..
T Consensus       437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~  483 (893)
T KOG0291|consen  437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSG  483 (893)
T ss_pred             eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCccee
Confidence            5678888998885 4555565 6999999999999999999999875

>KOG0265|consensus

Probab=99.88  E-value=2e-21  Score=118.43  Aligned_cols=115  Identities=27%  Similarity=0.398  Sum_probs=100.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC--ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS--LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      .|+|+|..+++|+.|..|.+|++.+.  -...+++|.+.|..+.|.++++.+++++.|.+++.||.++|+..+.++.|..
T Consensus        54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~  133 (338)
T KOG0265|consen   54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS  133 (338)
T ss_pred             EECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccc
Confidence            48999999999999999999998743  4567789999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          81 PALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        81 ~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      -++++.-..-|.  +.+++.|+++++||+|+.+++.++.
T Consensus       134 ~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~  172 (338)
T KOG0265|consen  134 FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE  172 (338)
T ss_pred             eeeecCccccCCeEEEecCCCceEEEEeecccchhhccc
Confidence            998887333343  5788899999999999877766653

>KOG0276|consensus

Probab=99.87  E-value=9.8e-22  Score=129.64  Aligned_cols=124  Identities=21%  Similarity=0.291  Sum_probs=114.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      .+|...+++++++|-+|++||-+  -.+.+++.+|+..|.+++|.| |.+.+++++-|+++++|.+....+..++.+|..
T Consensus       105 vHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek  184 (794)
T KOG0276|consen  105 VHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK  184 (794)
T ss_pred             ecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence            57889999999999999999976  456788999999999999999 788999999999999999999999999999999


Q ss_pred             CeEEEEEcCCC---cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840          81 PALDVDWQSNT---SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        81 ~v~~~~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  127 (131)
                      .|+++.|-+.+   .+++|++|..++|||..+..|++++.+|.+.+..++
T Consensus       185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~  234 (794)
T KOG0276|consen  185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF  234 (794)
T ss_pred             CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE
Confidence            99999998865   489999999999999999999999999999887654

>KOG0647|consensus

Probab=99.87  E-value=6e-21  Score=116.52  Aligned_cols=117  Identities=31%  Similarity=0.602  Sum_probs=98.4

Q ss_pred             cccC-CCCEEEEEeCCCeEEEEcCC--CCce-eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           3 SSRN-NGSFLATGSYDGYARIWTSD--GSLK-STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~-~~~~l~~~~~d~~i~~~~~~--~~~~-~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      +||| ...++++++.|++||+|+++  |..+ .....|++++.+++|+.+|..+++|+.|+.+++||+.+++ +..+..|
T Consensus        34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~H  112 (347)
T KOG0647|consen   34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAH  112 (347)
T ss_pred             EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeec
Confidence            5788 55666788899999999987  2333 3445789999999999999999999999999999999995 4566778


Q ss_pred             CCCeEEEEEcCC-C-c-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          79 SAPALDVDWQSN-T-S-FASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        79 ~~~v~~~~~~~~-~-~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      ..+|..+.|-+. . . |++|+.|.+|+.||+|...++.+++..+
T Consensus       113 d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe  157 (347)
T KOG0647|consen  113 DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE  157 (347)
T ss_pred             ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc
Confidence            999999999775 2 2 8999999999999999988888876544

>KOG0319|consensus

Probab=99.87  E-value=3.1e-21  Score=128.76  Aligned_cols=119  Identities=25%  Similarity=0.352  Sum_probs=106.3

Q ss_pred             CCEEEEEeCCCeEEEEcCCC------Cce----eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840           8 GSFLATGSYDGYARIWTSDG------SLK----STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~~------~~~----~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      ..++++++.|.++++|++..      ...    .+...|+..|.+++++|+.+++++|+.|.+.++|+++.......+.+
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG  503 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG  503 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence            46899999999999999863      111    13356999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |+..++++.|+|..+ +++++.|.+|+||.+.+..++.++++|...+-.+
T Consensus       504 H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra  553 (775)
T KOG0319|consen  504 HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA  553 (775)
T ss_pred             CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence            999999999999877 8999999999999999999999999999877543

>KOG0315|consensus

Probab=99.87  E-value=1.7e-20  Score=112.20  Aligned_cols=122  Identities=20%  Similarity=0.343  Sum_probs=108.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-ceeeee
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQF   75 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-~~~~~~   75 (131)
                      ..|||.+++++.+.|+..+|++-       -.++..++.|++.+..+.++|+++++++++.|.++++|+..+. +....+
T Consensus       175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l  254 (311)
T KOG0315|consen  175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL  254 (311)
T ss_pred             EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe
Confidence            57899999999999999999975       2456778889999999999999999999999999999999887 555667


Q ss_pred             ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          76 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      .+|..-++..+|+.|++ |++++.|+.+++|+++.++.++.+.+|-+...+
T Consensus       255 ~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc  305 (311)
T KOG0315|consen  255 TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC  305 (311)
T ss_pred             ecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence            78888899999999988 899999999999999999999999998765443

>KOG0277|consensus

Probab=99.87  E-value=1.1e-20  Score=113.20  Aligned_cols=120  Identities=22%  Similarity=0.356  Sum_probs=103.5

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      |++ ..+.+++++.||++++||..  .+++..++.|...|.++.|++ ....+++++.|++|++|+...++.+.++.+|.
T Consensus        68 Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~  147 (311)
T KOG0277|consen   68 WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN  147 (311)
T ss_pred             ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc
Confidence            444 45678888899999999975  678899999999999999999 66778888999999999999999999999999


Q ss_pred             CCeEEEEEcCC--CcEEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          80 APALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        80 ~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      ..|....|+|.  +.+++++.|+.+++||++.......+..|...+
T Consensus       148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Ei  193 (311)
T KOG0277|consen  148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEI  193 (311)
T ss_pred             cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecccee
Confidence            99999999996  348999999999999998765555588887443

>KOG0275|consensus

Probab=99.87  E-value=1.5e-22  Score=125.25  Aligned_cols=117  Identities=25%  Similarity=0.413  Sum_probs=109.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecc-cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      .|+.|.+.+++|+.||.|++|.+. |.+++.+. .|+..|+|+.|+.++..+++++.|.++++.-+.+|+++..+.+|..
T Consensus       270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS  349 (508)
T KOG0275|consen  270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS  349 (508)
T ss_pred             eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc
Confidence            478999999999999999999987 88888886 7999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      -|+...|.++|. +++++.||+|++|+.++.+|+.+++..
T Consensus       350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~  389 (508)
T KOG0275|consen  350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL  389 (508)
T ss_pred             cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence            999999999987 999999999999999999999888653

>KOG0645|consensus

Probab=99.86  E-value=5.8e-20  Score=110.83  Aligned_cols=124  Identities=25%  Similarity=0.501  Sum_probs=105.4

Q ss_pred             cccCC-CCEEEEEeCCCeEEEEcCCC-Cc---eeec-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC--cceeee
Q psy3840           3 SSRNN-GSFLATGSYDGYARIWTSDG-SL---KSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS--GQCEQQ   74 (131)
Q Consensus         3 ~~~~~-~~~l~~~~~d~~i~~~~~~~-~~---~~~~-~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~--~~~~~~   74 (131)
                      +|+|- |..||+++.|..|++|+..+ ..   ...+ .+|...|++++|+|.|+++++++.|.++.+|.-..  .+++..
T Consensus        21 awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~  100 (312)
T KOG0645|consen   21 AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVAT  100 (312)
T ss_pred             EeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEee
Confidence            57776 78999999999999999873 22   2222 46889999999999999999999999999998654  477889


Q ss_pred             eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC---eeeEEEecccceEEEE
Q psy3840          75 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD---KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~  126 (131)
                      +.+|..+|-+++|+++|. |++++.|..|.||....+   +++..+++|.+.+..+
T Consensus       101 lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen  101 LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence            999999999999999987 899999999999998754   6788888898877554

>KOG0315|consensus

Probab=99.86  E-value=1.2e-20  Score=112.87  Aligned_cols=110  Identities=20%  Similarity=0.323  Sum_probs=95.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      ...|++..|++++. ..||+||++   ..++.++.+|+..|..+.|..+|+++++|+.||++++||++...+.+.+. +.
T Consensus        47 eiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~  124 (311)
T KOG0315|consen   47 EITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HN  124 (311)
T ss_pred             EEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CC
Confidence            35789999999874 579999997   34788999999999999999999999999999999999999966655555 56


Q ss_pred             CCeEEEEEcCCC-cEEEEeCCCcEEEEeCCCCeeeE
Q psy3840          80 APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        80 ~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                      .+|+++..+|+. .|++|..+|.|++||+++..+..
T Consensus       125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~  160 (311)
T KOG0315|consen  125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH  160 (311)
T ss_pred             CCcceEEecCCcceEEeecCCCcEEEEEccCCcccc
Confidence            899999999984 59999999999999998764433

>KOG0277|consensus

Probab=99.86  E-value=5.1e-20  Score=110.38  Aligned_cols=121  Identities=21%  Similarity=0.322  Sum_probs=102.6

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           6 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      .+++.+++++-|++|++|+.. .+.+.++.+|...|...+|+| .++.+++++.|+.+++||++..-....+..|..++.
T Consensus       115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil  194 (311)
T KOG0277|consen  115 VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL  194 (311)
T ss_pred             ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE
Confidence            356778888999999999987 788899999999999999999 889999999999999999987444444888888999


Q ss_pred             EEEEcCCC--cEEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840          84 DVDWQSNT--SFASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        84 ~~~~~~~~--~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~  126 (131)
                      ++.|+.-.  .+++|+.|+.|+.||++.. .++..+.+|.-.+..+
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkv  240 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKV  240 (311)
T ss_pred             eecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEE
Confidence            99998643  3899999999999999975 5677778887666544

>KOG0318|consensus

Probab=99.85  E-value=1.2e-19  Score=117.64  Aligned_cols=120  Identities=29%  Similarity=0.398  Sum_probs=101.3

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecc---cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee-----
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-----   74 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~---~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~-----   74 (131)
                      |+|||+++++.+.||++.+||-. ++.+..+.   .|.+.|..+.|+||++.+++++.|.++++||+.+.+++++     
T Consensus       198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~  277 (603)
T KOG0318|consen  198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS  277 (603)
T ss_pred             ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC
Confidence            79999999999999999999966 77777776   7999999999999999999999999999999987654333     


Q ss_pred             --------------------------------------eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEE
Q psy3840          75 --------------------------------------FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        75 --------------------------------------~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~  115 (131)
                                                            +.+|...|+++..+|++. +++|+.||.|.-||..++..-+.
T Consensus       278 ~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~  357 (603)
T KOG0318|consen  278 TVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL  357 (603)
T ss_pred             chhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence                                                  246778899999999987 99999999999999988755433


Q ss_pred             E-ecccceE
Q psy3840         116 F-EGHTRVY  123 (131)
Q Consensus       116 ~-~~~~~~~  123 (131)
                      . +.|...+
T Consensus       358 ~g~~h~nqI  366 (603)
T KOG0318|consen  358 AGKGHTNQI  366 (603)
T ss_pred             ccccccceE
Confidence            2 4444443

>KOG0318|consensus

Probab=99.85  E-value=8.7e-20  Score=118.35  Aligned_cols=111  Identities=20%  Similarity=0.382  Sum_probs=101.4

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee---cCCCCeE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---FHSAPAL   83 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~   83 (131)
                      .-++++|++|++|-+|+-. .+...++..|...|.+++|+|||+.+++.+.||++.+||-.+++.+..+.   .|.+.|.
T Consensus       160 PfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf  239 (603)
T KOG0318|consen  160 PFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF  239 (603)
T ss_pred             ceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence            3578999999999999854 67777888999999999999999999999999999999999999998887   7899999


Q ss_pred             EEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          84 DVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        84 ~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      +++|+||++ +++++.|.+++|||..+.+.++++.-
T Consensus       240 alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~  275 (603)
T KOG0318|consen  240 ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM  275 (603)
T ss_pred             EEEECCCCceEEEecCCceEEEEEeeccceEEEeec
Confidence            999999976 99999999999999999988888753

>KOG0645|consensus

Probab=99.85  E-value=2.3e-19  Score=108.26  Aligned_cols=121  Identities=26%  Similarity=0.507  Sum_probs=107.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc---ceeeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG---QCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~---~~~~~~~   76 (131)
                      +|+|.|++|++|+-|.++.+|.-.   .+.+..+.+|+..|.+++|+++|++|++++.|+++-+|....+   ++...++
T Consensus        68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~  147 (312)
T KOG0645|consen   68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ  147 (312)
T ss_pred             eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence            589999999999999999999754   5778899999999999999999999999999999999998754   5677889


Q ss_pred             cCCCCeEEEEEcCC-CcEEEEeCCCcEEEEeCC---CCeeeEEEecccceE
Q psy3840          77 FHSAPALDVDWQSN-TSFASCSTDQHIHVCKLH---SDKPVKSFEGHTRVY  123 (131)
Q Consensus        77 ~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~~  123 (131)
                      .|...|-.+.|+|. ..|++++.|++|++|+-.   ..++.+++.+|...+
T Consensus       148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV  198 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV  198 (312)
T ss_pred             cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE
Confidence            99999999999997 458999999999999866   337899999988644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.85  E-value=1.9e-19  Score=126.48  Aligned_cols=119  Identities=18%  Similarity=0.352  Sum_probs=101.7

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           6 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      +++.+|++++.|++|++||+. ++.+..+.+|.+.|.+++|+| ++.++++++.|+.+++||++++..+..+..+ ..+.
T Consensus       543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~  621 (793)
T PLN00181        543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC  621 (793)
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence            357899999999999999987 667788889999999999997 7899999999999999999999888777754 6788


Q ss_pred             EEEEcC-CCc-EEEEeCCCcEEEEeCCCCe-eeEEEecccceEEE
Q psy3840          84 DVDWQS-NTS-FASCSTDQHIHVCKLHSDK-PVKSFEGHTRVYYL  125 (131)
Q Consensus        84 ~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~  125 (131)
                      ++.|.+ ++. +++|+.|+.|++||+++.. ++..+.+|...+..
T Consensus       622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~  666 (793)
T PLN00181        622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY  666 (793)
T ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEE
Confidence            999965 465 8999999999999998765 56677778766543

>KOG0265|consensus

Probab=99.85  E-value=5e-20  Score=112.42  Aligned_cols=124  Identities=18%  Similarity=0.241  Sum_probs=109.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      |.+|++.+++++.|.+++.||.+ |+....+++|...+..+.-+. ...++.+++.|+++++||+++...+.++.. ..+
T Consensus        98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyq  176 (338)
T KOG0265|consen   98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQ  176 (338)
T ss_pred             eccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-cee
Confidence            67899999999999999999987 899999999999999887444 445677888999999999999988877764 468


Q ss_pred             eEEEEEcCCC-cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEee
Q psy3840          82 ALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMD  128 (131)
Q Consensus        82 v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  128 (131)
                      ++++.|..++ ++.+|+=|+.|++||++..+.....++|...+..++.
T Consensus       177 ltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsl  224 (338)
T KOG0265|consen  177 LTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSL  224 (338)
T ss_pred             EEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEe
Confidence            8999998775 4999999999999999999999999999999887764

>KOG0302|consensus

Probab=99.85  E-value=5.2e-20  Score=115.36  Aligned_cols=105  Identities=28%  Similarity=0.541  Sum_probs=91.0

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCCC---CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC---cceeeeee
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSDG---SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS---GQCEQQFS   76 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~---~~~~~~~~   76 (131)
                      ||| ....|++|+-||.|+|||+..   +.....+.|.+-|..+.|+....++++|+.||++++||++.   ++++..+.
T Consensus       265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk  344 (440)
T KOG0302|consen  265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK  344 (440)
T ss_pred             cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE
Confidence            555 557889999999999999872   23444588999999999999888999999999999999986   57788999


Q ss_pred             cCCCCeEEEEEcCC--CcEEEEeCCCcEEEEeCC
Q psy3840          77 FHSAPALDVDWQSN--TSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        77 ~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~  108 (131)
                      .|..+|+++.|+|.  +.+++++.|.+|.+||+.
T Consensus       345 ~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  345 YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            99999999999996  448999999999999985

>KOG0289|consensus

Probab=99.84  E-value=1.7e-19  Score=114.72  Aligned_cols=125  Identities=20%  Similarity=0.281  Sum_probs=104.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      .+|+|++|+++++|+..-+.|++ +..+.....  ..-.+++.+|+|||..+.+|..|+.+++||+.++..+..|.+|.+
T Consensus       311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~  390 (506)
T KOG0289|consen  311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG  390 (506)
T ss_pred             eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence            57899999999999999999987 444433322  223589999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccc--eEEEEee
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTR--VYYLAMD  128 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~  128 (131)
                      +|..++|+.+|. ++++..|+.|++||+|..+...++.....  .....+|
T Consensus       391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  391 PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc
Confidence            999999999998 89999999999999998887777754433  3444443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.84  E-value=8e-19  Score=108.82  Aligned_cols=122  Identities=30%  Similarity=0.547  Sum_probs=105.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|+|+++++++++.+|.+++|+.. ++....+..|...+..+.|+|+++.+++++.++.+++||+.+++.+..+..+...
T Consensus        16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~   95 (289)
T cd00200          16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY   95 (289)
T ss_pred             EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc
Confidence            478899999999999999999987 5566777788889999999999999999999999999999998888888888889


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      +.++.|++++. +++++.++.+.+||+++++.+..+..|...+.
T Consensus        96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~  139 (289)
T cd00200          96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN  139 (289)
T ss_pred             EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE
Confidence            99999999877 55566699999999998888888877765443

>KOG0291|consensus

Probab=99.84  E-value=2.3e-19  Score=120.60  Aligned_cols=121  Identities=21%  Similarity=0.361  Sum_probs=109.0

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      +|+..|+.||.|+. -|.+-+|+-+ ..-+...++|...+.+++++|||+++++|+.||.|++||..++-+..++..|+.
T Consensus       314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts  393 (893)
T KOG0291|consen  314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS  393 (893)
T ss_pred             EecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC
Confidence            46778999999887 4789999976 556777889999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      .|+.+.|+..++ +++.+-||+|+.||+...+..+++..+...-
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q  437 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ  437 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee
Confidence            999999999887 8999999999999999999999987665443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.83  E-value=8.2e-19  Score=123.34  Aligned_cols=117  Identities=17%  Similarity=0.348  Sum_probs=98.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC---------ceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCccee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS---------LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~---------~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~   72 (131)
                      +|+|+++++++|+.|+.|++|+....         +...+. +...+.+++|+| .+.++++++.|+++++||+.+++.+
T Consensus       490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~  568 (793)
T PLN00181        490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV  568 (793)
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            58899999999999999999997421         112222 346789999988 5789999999999999999999988


Q ss_pred             eeeecCCCCeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          73 QQFSFHSAPALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      ..+..|...|++++|+| ++. +++++.|+.|++||++++..+..+..+.
T Consensus       569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~  618 (793)
T PLN00181        569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA  618 (793)
T ss_pred             EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC
Confidence            89999999999999997 555 8999999999999999998888776554

>KOG0303|consensus

Probab=99.83  E-value=7.2e-20  Score=115.37  Aligned_cols=119  Identities=21%  Similarity=0.338  Sum_probs=105.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--------CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--------GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQ   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--------~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~   73 (131)
                      |...+.+.||+|+.|.+|.+|.+.        .+++..+.+|...|--++|+| -.+.+++++.|.++.+||+.+++.+.
T Consensus        89 w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali  168 (472)
T KOG0303|consen   89 WCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI  168 (472)
T ss_pred             cCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee
Confidence            444477899999999999999976        356788899999999999999 56788899999999999999999988


Q ss_pred             eeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          74 QFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      .+. |...|+++.|+.+|. +++.+.|.+|+|||.++++.+..-.+|.+.
T Consensus       169 ~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~  217 (472)
T KOG0303|consen  169 TLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA  217 (472)
T ss_pred             ecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence            887 889999999999977 899999999999999999999888777653

>PTZ00421 coronin; Provisional

Probab=99.83  E-value=1.1e-18  Score=116.37  Aligned_cols=122  Identities=19%  Similarity=0.204  Sum_probs=97.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCc--------------eeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSL--------------KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~--------------~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      .++++..+++++.+.....|+..|..              ...+.+|.+.|.+++|+| ++.++++++.|++|++||+.+
T Consensus        28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~  107 (493)
T PTZ00421         28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE  107 (493)
T ss_pred             ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence            34566666666666666677654221              124678999999999999 889999999999999999976


Q ss_pred             c-------ceeeeeecCCCCeEEEEEcCCC--cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          69 G-------QCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        69 ~-------~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      +       +.+..+.+|...|.+++|+|++  .+++++.|+.|++||+++++.+..+..|...+..
T Consensus       108 ~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~s  173 (493)
T PTZ00421        108 EGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITS  173 (493)
T ss_pred             CccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence            4       3456778899999999999974  3899999999999999999999888888776543

>KOG0310|consensus

Probab=99.83  E-value=1.2e-19  Score=116.41  Aligned_cols=123  Identities=19%  Similarity=0.277  Sum_probs=103.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCC-CceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      |-.||+++++|+..|.|++||.+. ..+..+..|+.++..+.|+| ++..+++|+.|+.+++||+.+......+.+|++-
T Consensus        76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY  155 (487)
T KOG0310|consen   76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY  155 (487)
T ss_pred             eecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence            567899999999999999999653 45677889999999999999 5567778888999999999998876688899999


Q ss_pred             eEEEEEcCCC-c-EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEEe
Q psy3840          82 ALDVDWQSNT-S-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        82 v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~  127 (131)
                      |.+.+|+|.+ . +++|+.||.|++||+++. ..+.++. |..++..++
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl  203 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL  203 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence            9999999963 3 899999999999999987 5566655 555554443

>KOG0276|consensus

Probab=99.83  E-value=2.8e-19  Score=118.23  Aligned_cols=123  Identities=27%  Similarity=0.390  Sum_probs=112.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-cceeeeeecCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~-~~~~~~~~~~~~~   81 (131)
                      |-+..+.+++|++|..|++|+.+ ++.+..+..|.+.|++++.+|...++++++.|-.|++||-+. ..+.+++.+|..-
T Consensus        63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy  142 (794)
T KOG0276|consen   63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY  142 (794)
T ss_pred             eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence            44567899999999999999988 889999999999999999999999999999999999999886 4677889999999


Q ss_pred             eEEEEEcCC--CcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSN--TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |+.++|.|.  +.+++++-|++|+||.+.+..+.-++++|...++++
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V  189 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV  189 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence            999999996  349999999999999999999999999999888765

>KOG0293|consensus

Probab=99.83  E-value=9.9e-20  Score=115.40  Aligned_cols=106  Identities=27%  Similarity=0.490  Sum_probs=95.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC----CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec-
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD----GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~-   77 (131)
                      .||++|.+||+++.|.+..+|.+.    -+...++.+|..+|..+.|+||.+++++++.+..+.+||..+|.....+.. 
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~  310 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG  310 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC
Confidence            589999999999999999999864    355788899999999999999999999999999999999999998777764 


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                      +...+.+.+|.||+. +++|+.|+.+..||+.
T Consensus       311 ~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  311 LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             cCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            357899999999987 9999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.83  E-value=2e-18  Score=107.07  Aligned_cols=121  Identities=28%  Similarity=0.485  Sum_probs=104.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|+++++.+++++.++.|++|++. ++....+..|...+.++.|+|++.++++++.++.+++||+++++....+..+...
T Consensus        58 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  137 (289)
T cd00200          58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW  137 (289)
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence            367888899999999999999987 4677777888889999999999888888888999999999988888888878888


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      +.++.|+|++. +++++.++.+++||+++++.+..+..|...+
T Consensus       138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i  180 (289)
T cd00200         138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV  180 (289)
T ss_pred             EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc
Confidence            99999999877 5555559999999999888888887776443

>KOG0296|consensus

Probab=99.83  E-value=1e-18  Score=109.11  Aligned_cols=122  Identities=18%  Similarity=0.343  Sum_probs=109.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +.+|+.+++++|+.|..-.+|++. +.....+.+|.+.|.++.|+.+|.++++|+.+|.+++|...++.....+...-..
T Consensus        71 sl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~d  150 (399)
T KOG0296|consen   71 SLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVED  150 (399)
T ss_pred             EeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCc
Confidence            357899999999999999999987 7788889999999999999999999999999999999999999888888755667


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      +.-+.|+|.+. ++.|+.||.+.+|.+.++...+.+.+|..+.+
T Consensus       151 ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct  194 (399)
T KOG0296|consen  151 IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT  194 (399)
T ss_pred             eEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc
Confidence            88899999877 88999999999999998878888888876653

>KOG0283|consensus

Probab=99.82  E-value=1.3e-19  Score=122.18  Aligned_cols=107  Identities=27%  Similarity=0.510  Sum_probs=91.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCC--------------------------------------------------------
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDG--------------------------------------------------------   27 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~--------------------------------------------------------   27 (131)
                      |++||++||+|+.|+.|+||.+..                                                        
T Consensus       275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~  354 (712)
T KOG0283|consen  275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA  354 (712)
T ss_pred             eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence            899999999999999999996321                                                        


Q ss_pred             -----CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCC-Cc-EEEEeCCC
Q psy3840          28 -----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TS-FASCSTDQ  100 (131)
Q Consensus        28 -----~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~~~~~~d~  100 (131)
                           +++..+.+|.+.|..+.|+. ..+|++++.|.+++||++...+++..|. |..-|+|++|+|- .+ +++|+-|+
T Consensus       355 f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~  432 (712)
T KOG0283|consen  355 FVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDG  432 (712)
T ss_pred             ccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeeccccc
Confidence                 34456678999999999985 4578999999999999999999998887 7889999999994 44 99999999


Q ss_pred             cEEEEeCCCCee
Q psy3840         101 HIHVCKLHSDKP  112 (131)
Q Consensus       101 ~i~i~d~~~~~~  112 (131)
                      +++||++...+.
T Consensus       433 KvRiWsI~d~~V  444 (712)
T KOG0283|consen  433 KVRLWSISDKKV  444 (712)
T ss_pred             ceEEeecCcCee
Confidence            999999875443

>KOG0295|consensus

Probab=99.82  E-value=6.6e-19  Score=109.92  Aligned_cols=122  Identities=22%  Similarity=0.340  Sum_probs=110.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      |-|.|..+++++.|.+|+.|++. +-++.++.+|...+..++.+.||..+++++.|.++++|-+.++++...+..|..++
T Consensus       201 f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v  280 (406)
T KOG0295|consen  201 FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV  280 (406)
T ss_pred             EEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence            45778999999999999999998 88999999999999999999999999999999999999999999988999999999


Q ss_pred             EEEEEcCC---------------Cc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          83 LDVDWQSN---------------TS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        83 ~~~~~~~~---------------~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      .+++|.|+               ++ +.+++.|++|++||+.++.++.++.+|.+-+..
T Consensus       281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~  339 (406)
T KOG0295|consen  281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG  339 (406)
T ss_pred             EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence            99999541               13 678899999999999999999999998876643

>KOG0264|consensus

Probab=99.82  E-value=4.8e-19  Score=112.64  Aligned_cols=103  Identities=20%  Similarity=0.420  Sum_probs=90.8

Q ss_pred             CCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-cceeeeeecCCCC
Q psy3840           7 NGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSAP   81 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~-~~~~~~~~~~~~~   81 (131)
                      +...+++++.|+.+.|||++   .+.......|++++.|++|+| ++..+|+|+.|+++.+||+|+ .+++..+.+|...
T Consensus       239 h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de  318 (422)
T KOG0264|consen  239 HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE  318 (422)
T ss_pred             chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence            56788889999999999987   355566788999999999999 788899999999999999997 4567888899999


Q ss_pred             eEEEEEcCCCc--EEEEeCCCcEEEEeCCC
Q psy3840          82 ALDVDWQSNTS--FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        82 v~~~~~~~~~~--~~~~~~d~~i~i~d~~~  109 (131)
                      |..+.|+|...  +++++.|+.+.|||+..
T Consensus       319 v~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  319 VFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            99999999743  89999999999999965

>KOG0274|consensus

Probab=99.82  E-value=1.5e-18  Score=116.36  Aligned_cols=117  Identities=27%  Similarity=0.430  Sum_probs=106.9

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      -+.++++|+.|.++++||.. |.+...+.+|.+.+.++..  .+..+++|+.|.++++|+++++..+..+.+|..+|.++
T Consensus       260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            47899999999999999987 9999999999999999865  45667788999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ... ++.+++|+.|+.|.+||.++++++.++++|...+.++
T Consensus       338 ~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl  377 (537)
T KOG0274|consen  338 QLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL  377 (537)
T ss_pred             Eec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE
Confidence            997 5569999999999999999999999999999988774

>KOG0292|consensus

Probab=99.82  E-value=2.4e-19  Score=122.50  Aligned_cols=106  Identities=21%  Similarity=0.288  Sum_probs=100.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|+|+..++++|++|-.|++|+.+ .+++.++.+|.+.|+.+.|++.-.+++|++.|.+|++|+..+++++..+.+|..-
T Consensus        58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY  137 (1202)
T KOG0292|consen   58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY  137 (1202)
T ss_pred             eecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE
Confidence            489999999999999999999987 7888999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCC-CcEEEEeCCCcEEEEeCC
Q psy3840          82 ALDVDWQSN-TSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        82 v~~~~~~~~-~~~~~~~~d~~i~i~d~~  108 (131)
                      |+|..|+|. ..+++++-|.+|+|||+.
T Consensus       138 VMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen  138 VMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             EEeeccCCccceEEEecccceEEEEeec
Confidence            999999995 559999999999999985

>KOG0306|consensus

Probab=99.82  E-value=3.8e-19  Score=119.47  Aligned_cols=124  Identities=21%  Similarity=0.408  Sum_probs=115.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      ++|||+.+|+++--|.+|++|-+. -+....+.+|.-||.||..+|+++.+++|+.|..+++|-+.=|.+-..+.+|.+.
T Consensus       515 ~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS  594 (888)
T KOG0306|consen  515 SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS  594 (888)
T ss_pred             EEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence            479999999999999999999887 5677788999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |+++.|.|+.. +.+++.|+.++-||-...+.++.+.+|...+.+.
T Consensus       595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL  640 (888)
T KOG0306|consen  595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL  640 (888)
T ss_pred             eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence            99999999876 8999999999999999999999999998877554

>KOG0269|consensus

Probab=99.81  E-value=2e-19  Score=120.94  Aligned_cols=108  Identities=23%  Similarity=0.465  Sum_probs=94.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc-ceeeeeecCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSA   80 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~-~~~~~~~~~~~   80 (131)
                      .+-..++|++|++||+|++||+. .+...++.+..+.|+.++|+| .+..++++...|.+.+||++.. ++...+..|.+
T Consensus       142 h~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G  221 (839)
T KOG0269|consen  142 HSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG  221 (839)
T ss_pred             ccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC
Confidence            34467899999999999999997 556667777888999999999 7889999999999999999975 45677888999


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      +|.++.|+|++. |++|+.|+.|+|||..+.+
T Consensus       222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             ceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            999999999866 8999999999999997653

>PTZ00420 coronin; Provisional

Probab=99.81  E-value=4.9e-18  Score=114.46  Aligned_cols=105  Identities=17%  Similarity=0.255  Sum_probs=86.6

Q ss_pred             EeCCCeEEEEcCC-CCceeecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCcc--------eeeeeecCCCCeE
Q psy3840          14 GSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQ--------CEQQFSFHSAPAL   83 (131)
Q Consensus        14 ~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~~~--------~~~~~~~~~~~v~   83 (131)
                      |+.++.+++|+.. ...+..+.+|.+.|.+++|+|+ +.++++++.|++|++||+.++.        .+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            4456778888865 4566778899999999999995 7899999999999999997642        2345677888999


Q ss_pred             EEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          84 DVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        84 ~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      +++|+|++.  +++++.|+.|++||+++++.+..+..
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~  166 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM  166 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            999999865  57889999999999999887766653

>KOG0310|consensus

Probab=99.81  E-value=1.1e-18  Score=112.06  Aligned_cols=122  Identities=16%  Similarity=0.238  Sum_probs=95.9

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCCCCcee-ecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc-ceeeeeecCC
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSDGSLKS-TLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG-QCEQQFSFHS   79 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~-~~~~~~~~~~   79 (131)
                      |+| ++..+++|++|+.+++||+.+..+. .+.+|++.|.|.+|+| ++..+++|+.||.|++||.+.. ..+..+. |.
T Consensus       118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg  196 (487)
T KOG0310|consen  118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HG  196 (487)
T ss_pred             ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CC
Confidence            455 5567778888999999999855444 7889999999999999 6779999999999999999986 5555555 67


Q ss_pred             CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840          80 APALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~  126 (131)
                      .+|.++.+-|.|.++.....+.+++||+.+| +.+.....|...+++.
T Consensus       197 ~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL  244 (487)
T KOG0310|consen  197 CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCL  244 (487)
T ss_pred             CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEE
Confidence            8999999999977444445578999999966 4455555477766553

>KOG0264|consensus

Probab=99.81  E-value=5.5e-19  Score=112.39  Aligned_cols=120  Identities=23%  Similarity=0.399  Sum_probs=100.8

Q ss_pred             CCCEEEEEeCCCeEEEEcCC--C------CceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECC--Ccceeeee
Q psy3840           7 NGSFLATGSYDGYARIWTSD--G------SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAA--SGQCEQQF   75 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~--~------~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~--~~~~~~~~   75 (131)
                      ....+++++.|+.|++||++  +      .+...+.+|+..|..++|++ ...++++++.|+.+.|||.|  +.++....
T Consensus       189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~  268 (422)
T KOG0264|consen  189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV  268 (422)
T ss_pred             cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence            45678889999999999987  1      23456788999999999999 77789999999999999999  55666667


Q ss_pred             ecCCCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840          76 SFHSAPALDVDWQSNT-S-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~  126 (131)
                      ..|..++.+++|+|-+ . ||+|+.|++|.+||+|.. +++.++.+|...+..+
T Consensus       269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V  322 (422)
T KOG0264|consen  269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV  322 (422)
T ss_pred             cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE
Confidence            7899999999999964 3 899999999999999976 6788888888776544

>KOG0308|consensus

Probab=99.81  E-value=1.8e-18  Score=114.72  Aligned_cols=122  Identities=21%  Similarity=0.365  Sum_probs=108.0

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-C----------Cceeecc-cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-G----------SLKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE   72 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-~----------~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~   72 (131)
                      .++...+++|+-|+.|.+||++ +          .....+. ++...+.+++.++.+..+++|+..+-+++||+++++.+
T Consensus       127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki  206 (735)
T KOG0308|consen  127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI  206 (735)
T ss_pred             ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce
Confidence            4678899999999999999987 2          1122333 67889999999999999999999999999999999999


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ..+++|+..|..+..+++|. +++++.|++|++||+...+++.++..|...+...
T Consensus       207 mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  207 MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL  261 (735)
T ss_pred             eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence            99999999999999999986 9999999999999999999999999998886544

>KOG0267|consensus

Probab=99.80  E-value=5.1e-20  Score=123.06  Aligned_cols=120  Identities=22%  Similarity=0.378  Sum_probs=109.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      |+++...|++|+.+|+|++||+. .+.++++.+|..++.++.|+|-+.+.++|+.|..+++||.+..-+...+.+|...+
T Consensus        78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv  157 (825)
T KOG0267|consen   78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV  157 (825)
T ss_pred             cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee
Confidence            56777889999999999999997 77888999999999999999999999999999999999999888888999888889


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      ..+.|+|+|+ ++.++.|..++|||+..|+.+..|..|...+
T Consensus       158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v  199 (825)
T KOG0267|consen  158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKV  199 (825)
T ss_pred             EEEeecCCCceeeccCCcceeeeecccccccccccccccccc
Confidence            9999999998 7888889999999999999988888776544

>KOG0283|consensus

Probab=99.80  E-value=1.4e-18  Score=117.24  Aligned_cols=112  Identities=15%  Similarity=0.219  Sum_probs=93.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+. +++|++++-|.+|++|++..+.-.....|.+.|+|++|+| |.+++++|+-|+.++||++...+.+. +..-..-
T Consensus       376 SWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~l  453 (712)
T KOG0283|consen  376 SWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDL  453 (712)
T ss_pred             cccc-CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhh
Confidence            4675 5888999999999999998444444556999999999999 99999999999999999998776543 3444578


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      |++++|.|+|+ .+.|+-+|.+++|+.+..+.....
T Consensus       454 ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  454 ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             heeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            99999999999 788999999999999876655544

>KOG0274|consensus

Probab=99.80  E-value=6.1e-19  Score=118.26  Aligned_cols=118  Identities=25%  Similarity=0.462  Sum_probs=106.7

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      .-.+..+.+|+.|.+|++|+++ +..+..+.+|.++|.++..+  +..+++|+.|++|++||+.+++++..+.+|...|.
T Consensus       298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~  375 (537)
T KOG0274|consen  298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY  375 (537)
T ss_pred             EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence            3445677888999999999998 78888888899999999987  88999999999999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEeCCCcEEEEeCCCC-eeeEEEecccceEE
Q psy3840          84 DVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYY  124 (131)
Q Consensus        84 ~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~  124 (131)
                      ++.+.+...+++|+.|+.|++||+++. +++.++.+|...+.
T Consensus       376 sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~  417 (537)
T KOG0274|consen  376 SLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVS  417 (537)
T ss_pred             EEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccc
Confidence            998877656999999999999999999 99999999987763

>KOG0973|consensus

Probab=99.80  E-value=1.3e-18  Score=120.08  Aligned_cols=127  Identities=25%  Similarity=0.476  Sum_probs=108.0

Q ss_pred             ccCCCCEEEEEe--CCCeEEEEcCC-------------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840           4 SRNNGSFLATGS--YDGYARIWTSD-------------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         4 ~~~~~~~l~~~~--~d~~i~~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      .+|++..+++|+  .|+.+.+|+..             .+.+.....|.+.|.|+.|+|+|+++++|+.|+.+.+|+...
T Consensus        21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~  100 (942)
T KOG0973|consen   21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAE  100 (942)
T ss_pred             ecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecc
Confidence            589999999999  79999999865             133455677999999999999999999999999999998762


Q ss_pred             ------------------cceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE-EEEee
Q psy3840          69 ------------------GQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY-YLAMD  128 (131)
Q Consensus        69 ------------------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~  128 (131)
                                        .+.+..+.+|...|..+.|+|++. +++++-|++|.+||.++.+.+..+.+|...+ ...+|
T Consensus       101 ~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~D  180 (942)
T KOG0973|consen  101 IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWD  180 (942)
T ss_pred             cCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEEC
Confidence                              135567788999999999999987 8999999999999999999999999998765 44445


Q ss_pred             ec
Q psy3840         129 LL  130 (131)
Q Consensus       129 ~~  130 (131)
                      +.
T Consensus       181 P~  182 (942)
T KOG0973|consen  181 PI  182 (942)
T ss_pred             Cc
Confidence            43

>KOG0646|consensus

Probab=99.80  E-value=3.3e-18  Score=109.48  Aligned_cols=126  Identities=25%  Similarity=0.357  Sum_probs=110.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC---------Ccceee
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA---------SGQCEQ   73 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~---------~~~~~~   73 (131)
                      -+|+|.+++.|+..|.+++|.+. |..+..+..|-..|+|+.|+-|+.++++|+.||.+.+|.+.         +.+++.
T Consensus        89 s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~  168 (476)
T KOG0646|consen   89 SSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH  168 (476)
T ss_pred             cCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence            36789999999899999999998 88888899999999999999999999999999999999764         245677


Q ss_pred             eeecCCCCeEEEEEcCC---CcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEeee
Q psy3840          74 QFSFHSAPALDVDWQSN---TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAMDL  129 (131)
Q Consensus        74 ~~~~~~~~v~~~~~~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  129 (131)
                      .+..|.-+|+++...+.   .++++++.|+++++||+..+..+.++.........++|+
T Consensus       169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp  227 (476)
T KOG0646|consen  169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP  227 (476)
T ss_pred             eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc
Confidence            88889999999998765   459999999999999999999999887776666666665

>KOG0640|consensus

Probab=99.80  E-value=1.2e-18  Score=107.45  Aligned_cols=117  Identities=20%  Similarity=0.401  Sum_probs=101.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-Cce---eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec-
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-SLK---STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~~~---~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~-   77 (131)
                      +|+|.|+++++|.+-.++++||++. ++.   .--..|++.|+++.+++.+++.++++.||.|++||--+++++.++.. 
T Consensus       223 SfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A  302 (430)
T KOG0640|consen  223 SFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA  302 (430)
T ss_pred             eecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence            5899999999999999999999872 221   22356999999999999999999999999999999999999988763 


Q ss_pred             C-CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          78 H-SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        78 ~-~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      | ...|++..|..+++ +++.+.|..+++|.+.+++++..+.+-
T Consensus       303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence            3 34789999999988 889999999999999999999988653

>KOG0296|consensus

Probab=99.80  E-value=4.4e-18  Score=106.29  Aligned_cols=115  Identities=23%  Similarity=0.364  Sum_probs=103.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|+.+|.+||+|+-+|.|++|... +.....+..--+.+.-|.|+|.+..++.|+.||.+.+|.+.++...+.+.+|..+
T Consensus       113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             EEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence            488999999999999999999987 5555555545567888999999999999999999999999998888999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +++-.|.|+|+ ++++..|++|++||+++++++..+.
T Consensus       193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             cccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            99999999988 8999999999999999999988876

>KOG0643|consensus

Probab=99.80  E-value=5.5e-18  Score=102.42  Aligned_cols=120  Identities=18%  Similarity=0.320  Sum_probs=99.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEc-CCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee------
Q psy3840           4 SRNNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS------   76 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~------   76 (131)
                      |+.+|.+|.+++.|.+..+|- .+|+.+.++.+|++.|+|+..+.+.+.+++|+.|.++++||+++|+.+..+.      
T Consensus        18 yN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk   97 (327)
T KOG0643|consen   18 YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK   97 (327)
T ss_pred             ecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE
Confidence            678999999999999999996 4799999999999999999999999999999999999999999998655431      


Q ss_pred             -----------------------------------------------cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          77 -----------------------------------------------FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        77 -----------------------------------------------~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                                                                     .+...++..-|.|-+. +++|..+|.|.+||.+
T Consensus        98 ~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~  177 (327)
T KOG0643|consen   98 RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDAR  177 (327)
T ss_pred             EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcc
Confidence                                                           1234566777888776 8888899999999999


Q ss_pred             CCe-eeEEEecccceE
Q psy3840         109 SDK-PVKSFEGHTRVY  123 (131)
Q Consensus       109 ~~~-~~~~~~~~~~~~  123 (131)
                      +++ .+.+.+.|...+
T Consensus       178 ~g~~~v~s~~~h~~~I  193 (327)
T KOG0643|consen  178 TGKELVDSDEEHSSKI  193 (327)
T ss_pred             cCceeeechhhhcccc
Confidence            874 445555565533

>KOG0316|consensus

Probab=99.80  E-value=1.5e-18  Score=103.28  Aligned_cols=106  Identities=15%  Similarity=0.287  Sum_probs=78.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--ceeeeeecCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--QCEQQFSFHSA   80 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~--~~~~~~~~~~~   80 (131)
                      .+.|+..+++|+.|..+.+||++ |+..+.+.+|.+.|..++|+.+...+++|+.|.++++||+++.  ++++.+.....
T Consensus        67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D  146 (307)
T KOG0316|consen   67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD  146 (307)
T ss_pred             ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence            46688899999999999999998 8999999999999999999999999999999999999999864  44555444334


Q ss_pred             CeEEEEEcCCCcEEEEeCCCcEEEEeCCCC
Q psy3840          81 PALDVDWQSNTSFASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~  110 (131)
                      .|.++... +..+++|+.||+++.||+|.|
T Consensus       147 ~V~Si~v~-~heIvaGS~DGtvRtydiR~G  175 (307)
T KOG0316|consen  147 GVSSIDVA-EHEIVAGSVDGTVRTYDIRKG  175 (307)
T ss_pred             ceeEEEec-ccEEEeeccCCcEEEEEeecc
Confidence            44444332 112444444444444444443

>KOG0294|consensus

Probab=99.79  E-value=3e-18  Score=105.45  Aligned_cols=110  Identities=24%  Similarity=0.301  Sum_probs=98.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCC--EEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGN--YILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~--~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +..-++.++++|+.|.+|++||.. ......+..|.+.|+++.|.+...  .+++|+.||.|.+|+....+++..++.|.
T Consensus        48 avAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~  127 (362)
T KOG0294|consen   48 ALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHK  127 (362)
T ss_pred             EEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccc
Confidence            445678999999999999999987 566777788999999999998665  89999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCee
Q psy3840          80 APALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        80 ~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~  112 (131)
                      +.|+.++.+|.++| ++.+.|+.+++||+-+|+.
T Consensus       128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen  128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             cccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence            99999999999995 6778999999999977643

>KOG0269|consensus

Probab=99.79  E-value=2.9e-19  Score=120.12  Aligned_cols=124  Identities=20%  Similarity=0.322  Sum_probs=106.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC----CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD----GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      |-.-+.++||+++.+|.|.+||+.    .+.+..+..|+..+.++.|++ ...++++|++||.|++||++..+...++.+
T Consensus        95 W~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~  174 (839)
T KOG0269|consen   95 WGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS  174 (839)
T ss_pred             cccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc
Confidence            334567899999999999999987    345567788999999999999 788999999999999999999998888888


Q ss_pred             CCCCeEEEEEcCC--CcEEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840          78 HSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        78 ~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~  126 (131)
                      ....+..++|+|.  ..++++.+.|.+++||+|.. ++...+.+|.+++.++
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~  226 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL  226 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence            8889999999996  34899999999999999976 5667778888776543

>KOG0640|consensus

Probab=99.79  E-value=1.5e-18  Score=106.98  Aligned_cols=115  Identities=17%  Similarity=0.298  Sum_probs=96.9

Q ss_pred             ccccCCCCEEEEEeCCCeEEEEcCC-------------------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy3840           2 QSSRNNGSFLATGSYDGYARIWTSD-------------------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI   62 (131)
Q Consensus         2 ~~~~~~~~~l~~~~~d~~i~~~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~   62 (131)
                      .+|++||.++++|+.|..|++.|++                   ...++++..|.+.|.++.|+|....+++++.|++++
T Consensus       118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK  197 (430)
T KOG0640|consen  118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK  197 (430)
T ss_pred             eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Confidence            4699999999999999999999976                   034577888999999999999999999999999999


Q ss_pred             EEECCCccee---eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          63 IWDAASGQCE---QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        63 ~~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +||+.+....   +.++ ...++.++.|+|.|. ++.|.....+++||+++.++...-.
T Consensus       198 lFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  198 LFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             EEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence            9999764332   2333 456899999999988 6777777899999999998877654

>KOG0305|consensus

Probab=99.79  E-value=2.7e-18  Score=112.66  Aligned_cols=121  Identities=24%  Similarity=0.345  Sum_probs=107.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee-eecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~-~~~~~   79 (131)
                      .|+++|..|++|..+|.|.+||.. .+.+..+.+ |...|.+++|.  +..+.+|+.++.|..+|++..+.... +.+|.
T Consensus       224 ~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~  301 (484)
T KOG0305|consen  224 KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHR  301 (484)
T ss_pred             EECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhccc
Confidence            378999999999999999999987 666777777 99999999997  77889999999999999998766555 88899


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      ..|+.++|++++. +++|+.|+.+.|||....+++..+..|...+..
T Consensus       302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA  348 (484)
T KOG0305|consen  302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA  348 (484)
T ss_pred             ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence            9999999999987 999999999999999888999999999887643

>KOG0289|consensus

Probab=99.79  E-value=4.8e-18  Score=108.26  Aligned_cols=118  Identities=19%  Similarity=0.418  Sum_probs=98.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC-CC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-SA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-~~   80 (131)
                      +|+|||.++.+|..|+.|++||++ +..+..+.+|+++|..++|+.+|-+++++..|+.+++||++.-+...++.-. ..
T Consensus       354 ~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~  433 (506)
T KOG0289|consen  354 AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK  433 (506)
T ss_pred             eEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc
Confidence            589999999999999999999997 6677889999999999999999999999999999999999998877777643 34


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCC--CCeeeEEEeccc
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLH--SDKPVKSFEGHT  120 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~--~~~~~~~~~~~~  120 (131)
                      ++.++.|.+.|. ++.++.+=+|++++-.  ...++..+..|.
T Consensus       434 ~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s  476 (506)
T KOG0289|consen  434 EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS  476 (506)
T ss_pred             cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc
Confidence            799999999988 7777666667776633  345566555555

>KOG1407|consensus

Probab=99.78  E-value=8.2e-18  Score=101.33  Aligned_cols=117  Identities=17%  Similarity=0.328  Sum_probs=101.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC------------------------------------------CCceeecccccccE
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD------------------------------------------GSLKSTLGQHKGPI   40 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~------------------------------------------~~~~~~~~~~~~~i   40 (131)
                      .|+|+|+++++++.|..|.+.|..                                          -+++..++.|+..+
T Consensus       113 ~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC  192 (313)
T KOG1407|consen  113 TWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC  192 (313)
T ss_pred             EEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence            477888888888888777777653                                          14556677799999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          41 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        41 ~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      .|+.|+|+|+++++|+.|-.+.+||+.+--+++.+....-+|..+.|+.+++ |++++.|..|-|=++++|..+..+...
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc
Confidence            9999999999999999999999999999999999998888999999999998 899999999999999999888877643

>KOG0282|consensus

Probab=99.78  E-value=1.6e-18  Score=111.39  Aligned_cols=112  Identities=25%  Similarity=0.469  Sum_probs=98.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      .|+++|..+++++.|+.+++||++ |+.+..+. -...+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+
T Consensus       265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg  343 (503)
T KOG0282|consen  265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG  343 (503)
T ss_pred             hccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence            589999999999999999999998 66665544 33467999999977 8899999999999999999999999999999


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEE
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~  115 (131)
                      .+..+.|-++++ +++.++|+.++||+.+...++..
T Consensus       344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~  379 (503)
T KOG0282|consen  344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN  379 (503)
T ss_pred             heeeeEEccCCceEeeeccCccEEEEEcCCCccchh
Confidence            999999999987 99999999999999987765543

>KOG0313|consensus

Probab=99.78  E-value=2.1e-18  Score=108.20  Aligned_cols=105  Identities=27%  Similarity=0.430  Sum_probs=93.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC---CC-ceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcc-eeeeeec
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD---GS-LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQ-CEQQFSF   77 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~---~~-~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~-~~~~~~~   77 (131)
                      ++|..++|++|+.|..+++||..   +. ....+.+|.+.|..+.|+| +..++++++.|+++++||+++.+ ++..+.+
T Consensus       308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~  387 (423)
T KOG0313|consen  308 YSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG  387 (423)
T ss_pred             cccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence            56788999999999999999986   33 3467889999999999999 66688999999999999999877 8899999


Q ss_pred             CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840          78 HSAPALDVDWQSNTSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~  108 (131)
                      |...|.++.|.....+++|+.|++++|+.-.
T Consensus       388 h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  388 HNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCceEEEEeccCCceEEeccCcceEEEeccc
Confidence            9999999999877779999999999998643

>KOG0973|consensus

Probab=99.78  E-value=4.7e-18  Score=117.40  Aligned_cols=114  Identities=27%  Similarity=0.460  Sum_probs=102.6

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC--------C-----------CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD--------G-----------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW   64 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~--------~-----------~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~   64 (131)
                      |++||++||+|++|..|.+|...        +           +.+..+.+|+..|..++|+|++.++++++.|++|.+|
T Consensus        77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence            89999999999999999999754        1           2566788999999999999999999999999999999


Q ss_pred             ECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          65 DAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        65 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      |.++.+.+..+.+|...|-.+.|+|-|+ +++-+.|++++||++.+......+.
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence            9999999999999999999999999998 8999999999999987665555544

>KOG1445|consensus

Probab=99.78  E-value=5.8e-19  Score=117.44  Aligned_cols=108  Identities=19%  Similarity=0.339  Sum_probs=97.0

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCC--------CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceee
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSD--------GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQ   73 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~--------~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~   73 (131)
                      |.| |.++|+++++||.|++|.+.        ..+...+..|..+|+++.|+| -...+++++.|.+|++||+++++...
T Consensus       635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~  714 (1012)
T KOG1445|consen  635 WDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS  714 (1012)
T ss_pred             cCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh
Confidence            444 78999999999999999875        244567788999999999999 67789999999999999999999999


Q ss_pred             eeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          74 QFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      .+.+|.+.|..++|+|+|+ +++.+.|+++++|+.++++
T Consensus       715 ~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  715 RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            9999999999999999998 8999999999999998763

>KOG0313|consensus

Probab=99.78  E-value=6.6e-18  Score=106.02  Aligned_cols=116  Identities=22%  Similarity=0.436  Sum_probs=98.7

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc---eeeeeecCCCCeE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ---CEQQFSFHSAPAL   83 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~---~~~~~~~~~~~v~   83 (131)
                      ...+++++.|.+|+.||+. ++.+.++. ....+.++..+|...++++|+.|..+++||++++.   ...++.+|..-|.
T Consensus       271 ~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs  349 (423)
T KOG0313|consen  271 ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS  349 (423)
T ss_pred             CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh
Confidence            6788999999999999998 55555544 34578999999999999999999999999999753   3466788999999


Q ss_pred             EEEEcCCCc--EEEEeCCCcEEEEeCCCCe-eeEEEecccceEE
Q psy3840          84 DVDWQSNTS--FASCSTDQHIHVCKLHSDK-PVKSFEGHTRVYY  124 (131)
Q Consensus        84 ~~~~~~~~~--~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~  124 (131)
                      ++.|+|...  |++++.|+++++||+|+.. ++..+.+|..-+-
T Consensus       350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl  393 (423)
T KOG0313|consen  350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL  393 (423)
T ss_pred             heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence            999999753  8999999999999999987 8999988866543

>KOG0281|consensus

Probab=99.78  E-value=1.5e-18  Score=108.42  Aligned_cols=117  Identities=25%  Similarity=0.427  Sum_probs=95.1

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc---eeeeeecCCCC
Q psy3840           6 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ---CEQQFSFHSAP   81 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~---~~~~~~~~~~~   81 (131)
                      -+.+.+++|+.|.+|++||.+ ++++.++..|.+.|..+.|+  ..++++++.|.++.+||+....   +...+.+|...
T Consensus       245 yd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa  322 (499)
T KOG0281|consen  245 YDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  322 (499)
T ss_pred             ccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence            356678888888899999887 88888888888888888885  5678888899999999887653   23456688888


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      |+.+.|+.. .+++++.|++|++|++.+++.++++.+|...+.+
T Consensus       323 VNvVdfd~k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIAC  365 (499)
T KOG0281|consen  323 VNVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC  365 (499)
T ss_pred             eeeeccccc-eEEEecCCceEEEEeccceeeehhhhccccccee
Confidence            998888543 4889999999999999999999999999877654

>KOG0306|consensus

Probab=99.77  E-value=1.1e-17  Score=112.56  Aligned_cols=121  Identities=21%  Similarity=0.325  Sum_probs=109.1

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      +++.-.||+|..||.|++|+.. +....++.+|...|+++.|+..|..+++|+.|+.|.+||+-...-+..+.+|...++
T Consensus        74 ~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT  153 (888)
T KOG0306|consen   74 SDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSIT  153 (888)
T ss_pred             cCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHh
Confidence            4677788999999999999986 667778899999999999999999999999999999999988888889999999999


Q ss_pred             EEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          84 DVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        84 ~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      ...|..+.. +++.+.|+.|++||+.+..|..+...|...+..
T Consensus       154 ~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~  196 (888)
T KOG0306|consen  154 QALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA  196 (888)
T ss_pred             HHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence            999988544 899999999999999999999999888877643

>KOG0278|consensus

Probab=99.77  E-value=1.8e-18  Score=103.84  Aligned_cols=117  Identities=20%  Similarity=0.357  Sum_probs=105.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      +|+.|.++|++|+.+..+++||++  ..+...+.+|++.|..+.|....+.+++...|+++++||.++++.+.++.. ..
T Consensus       107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s  185 (334)
T KOG0278|consen  107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NS  185 (334)
T ss_pred             EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CC
Confidence            588999999999999999999987  567788899999999999999999999999999999999999999999884 57


Q ss_pred             CeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          81 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      +|.++-.+++|++++-...+.|.+||.++...+..++...
T Consensus       186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~  225 (334)
T KOG0278|consen  186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC  225 (334)
T ss_pred             CCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc
Confidence            8999999999998888888999999999888877765443

>KOG0281|consensus

Probab=99.77  E-value=4.8e-19  Score=110.58  Aligned_cols=114  Identities=19%  Similarity=0.379  Sum_probs=99.6

Q ss_pred             CCCEEEEEeCCCeEEEEcCC----CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           7 NGSFLATGSYDGYARIWTSD----GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      ++.++++++.|.++.+||..    -...+.+.+|...|..+.|+  .+++++++.|.++++|+..+++.++++.+|...+
T Consensus       286 ~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGI  363 (499)
T KOG0281|consen  286 SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI  363 (499)
T ss_pred             eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccc
Confidence            46789999999999999976    23446678999999999886  5599999999999999999999999999999898


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      .++.+  .++ +++|+.|.+|++||+..|.+++.+++|+..+.
T Consensus       364 AClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR  404 (499)
T KOG0281|consen  364 ACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR  404 (499)
T ss_pred             eehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh
Confidence            88766  456 78999999999999999999999999987553

>KOG0270|consensus

Probab=99.77  E-value=3.5e-17  Score=104.39  Aligned_cols=120  Identities=22%  Similarity=0.381  Sum_probs=101.6

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcce-eeeeecCCCCeE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQC-EQQFSFHSAPAL   83 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~   83 (131)
                      ..+.||+|+.|.+|.+||+. +++...+..|.++|.++.|+| .+..+++|+.|+++.+.|++.... -..++ ..+.|.
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VE  333 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVE  333 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceE
Confidence            35789999999999999998 888888888999999999999 788999999999999999995322 23333 357899


Q ss_pred             EEEEcCCCc--EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEEe
Q psy3840          84 DVDWQSNTS--FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        84 ~~~~~~~~~--~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~  127 (131)
                      .++|.|...  ++++..||.++-+|+|.. +++.+++.|...+..+.
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~  380 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS  380 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence            999998743  788899999999999976 89999999998887654

>KOG0649|consensus

Probab=99.76  E-value=5.1e-17  Score=97.36  Aligned_cols=79  Identities=24%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEE-cCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          40 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        40 i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      |.+|-..|..+.++.++.|+.++.||+++|+..+.+++|.+-+.++.- +.++++++|+.||++++||+++++++..+..
T Consensus       117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence            344555676667777779999999999999999999999999999887 5567899999999999999999999888754

>KOG0305|consensus

Probab=99.76  E-value=2.8e-17  Score=107.91  Aligned_cols=122  Identities=22%  Similarity=0.369  Sum_probs=105.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEe--CCCcEEEEECCCcceeeeeecC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAG--VDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~--~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      .|++|+.++|+|+.|+.+.+||.. ..++..+..|...|..++|+| ....||+|+  .|+.|++||..+++.+..... 
T Consensus       308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-  386 (484)
T KOG0305|consen  308 KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-  386 (484)
T ss_pred             EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-
Confidence            589999999999999999999985 677788899999999999999 778888875  499999999999998877764 


Q ss_pred             CCCeEEEEEcCCCc-EEEE--eCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          79 SAPALDVDWQSNTS-FASC--STDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      ...|+.+.|++..+ ++++  -.++.|.||+..+.+.+..+.+|...+..
T Consensus       387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~  436 (484)
T KOG0305|consen  387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY  436 (484)
T ss_pred             CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE
Confidence            57899999999865 5543  34668999999999999999999887643

>KOG1034|consensus

Probab=99.76  E-value=7.1e-18  Score=104.36  Aligned_cols=102  Identities=28%  Similarity=0.527  Sum_probs=93.3

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeee---cCCCCe
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFS---FHSAPA   82 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~v   82 (131)
                      ..++++|+.-|.|++.|+. ++....+.+|.+.|..+.++| +.+++++++.|.++++|++++..++..+.   +|++.|
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            5688889999999999986 788888999999999999999 67899999999999999999999988875   588999


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                      .++.|++++. +++++.|..+++|++..
T Consensus       185 LSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  185 LSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             EEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            9999999976 99999999999999984

>KOG0300|consensus

Probab=99.76  E-value=1.8e-17  Score=102.69  Aligned_cols=114  Identities=20%  Similarity=0.347  Sum_probs=101.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-ceeeeeecCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~   81 (131)
                      |-..++.+++++.|.+..+||++ +..+..+.+|+...+.+.-+|..+++++.+.|.+.++||++.. ..+..|++|...
T Consensus       280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt  359 (481)
T KOG0300|consen  280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT  359 (481)
T ss_pred             hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence            44568999999999999999998 8889999999999999999999999999999999999999863 556789999999


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCC-eeeEEEe
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFE  117 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~  117 (131)
                      |++..|..+.++++|++|.+|++||+++. .++.++.
T Consensus       360 VTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR  396 (481)
T KOG0300|consen  360 VTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR  396 (481)
T ss_pred             eeEEEEecCCceeecCCCceEEEeeeccccCcceeee
Confidence            99999999999999999999999999875 3555554

>KOG1446|consensus

Probab=99.76  E-value=1.9e-16  Score=97.29  Aligned_cols=119  Identities=19%  Similarity=0.258  Sum_probs=94.9

Q ss_pred             CccccCCCCEEEEEeCCCeEEEEcCC---CCceeecc---cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee
Q psy3840           1 MQSSRNNGSFLATGSYDGYARIWTSD---GSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         1 ~~~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~---~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~   74 (131)
                      +.+|.|+|-++|++...+.|++||++   ..+-.++.   ........|.|+|+|+.++.+...+.+++.|.-+|.....
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t  224 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST  224 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence            35788888888888877788888876   22322222   2345678999999999999999999999999999998888


Q ss_pred             eecCCCC---eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          75 FSFHSAP---ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        75 ~~~~~~~---v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      +..+...   .....|.||++ +++|+.||+|++|+++++..+..+.+.
T Consensus       225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            7765433   25678899998 678888899999999999999998873

>KOG4283|consensus

Probab=99.76  E-value=2.6e-17  Score=100.94  Aligned_cols=119  Identities=17%  Similarity=0.285  Sum_probs=100.2

Q ss_pred             ccccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCC---CCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           2 QSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR---GNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         2 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      .||+-|..++.+++-|.++++||.+.-........++.|.+-+++|-   ..++++|..+..+++.|+.+|.....+.+|
T Consensus       108 ~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH  187 (397)
T KOG4283|consen  108 IWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH  187 (397)
T ss_pred             EEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc
Confidence            46777888999999999999999985444444557788888899993   447888888999999999999999999999


Q ss_pred             CCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCC-eeeEEEeccc
Q psy3840          79 SAPALDVDWQSNTS--FASCSTDQHIHVCKLHSD-KPVKSFEGHT  120 (131)
Q Consensus        79 ~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~-~~~~~~~~~~  120 (131)
                      ++.|.++.|+|...  |++|+.|+.|++||+|.- .+...+..|.
T Consensus       188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn  232 (397)
T KOG4283|consen  188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN  232 (397)
T ss_pred             cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence            99999999999865  799999999999999875 5666666554

>KOG0267|consensus

Probab=99.76  E-value=2.1e-18  Score=115.53  Aligned_cols=116  Identities=23%  Similarity=0.401  Sum_probs=107.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      |+|-+.+.+.|+.|+.+.+||.. ..+...+.+|...+..++|+|+|+++++++.|.++++||+..|+....|..|...+
T Consensus       120 f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v  199 (825)
T KOG0267|consen  120 FHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKV  199 (825)
T ss_pred             eccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccc
Confidence            89999999999999999999998 78888999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ..+.|+|... +++|+.|+.+++||+++.+.+......
T Consensus       200 ~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~  237 (825)
T KOG0267|consen  200 QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE  237 (825)
T ss_pred             cccccCchhhhhccCCCCceeeeeccceeEEeeccCCc
Confidence            9999999876 789999999999999988777665543

>KOG0302|consensus

Probab=99.76  E-value=1.2e-17  Score=104.86  Aligned_cols=122  Identities=20%  Similarity=0.356  Sum_probs=96.4

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCC-CC---ceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcc---eeee
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSD-GS---LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQ---CEQQ   74 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~-~~---~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~---~~~~   74 (131)
                      ||| ....+++|.--+.|++|... +.   -..-+.+|+..|..++|+| ....+++++.|++|+|||++.++   ++..
T Consensus       219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~  298 (440)
T KOG0302|consen  219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST  298 (440)
T ss_pred             cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence            455 33457788777789999865 21   1123456999999999999 66789999999999999999873   3333


Q ss_pred             eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC---CeeeEEEecccceEEEE
Q psy3840          75 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHS---DKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~  126 (131)
                       +.|...|+.+.|+..-. |++|+.||+++|||+|.   ++++..++.|..+++++
T Consensus       299 -kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi  353 (440)
T KOG0302|consen  299 -KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI  353 (440)
T ss_pred             -eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE
Confidence             66888999999988744 89999999999999986   47889999998888765

>KOG1273|consensus

Probab=99.75  E-value=5.4e-17  Score=100.25  Aligned_cols=116  Identities=22%  Similarity=0.360  Sum_probs=91.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|++.|.++|+|+.||.|-+||+. ...-+.+.+|..+|++++|+++|+.+++++.|..+.+||+..|.++..+.- ..+
T Consensus        30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~sp  108 (405)
T KOG1273|consen   30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSP  108 (405)
T ss_pred             EeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCc
Confidence            378999999999999999999987 556677889999999999999999999999999999999998876544321 011


Q ss_pred             eE-----------------------------------------------EEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          82 AL-----------------------------------------------DVDWQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        82 v~-----------------------------------------------~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      |+                                               +..|.+.|+ +++|..-|.+.++|..+.+++
T Consensus       109 v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v  188 (405)
T KOG1273|consen  109 VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV  188 (405)
T ss_pred             cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheee
Confidence            11                                               112444455 677888888899998888887


Q ss_pred             EEEecc
Q psy3840         114 KSFEGH  119 (131)
Q Consensus       114 ~~~~~~  119 (131)
                      ..++.-
T Consensus       189 as~rit  194 (405)
T KOG1273|consen  189 ASFRIT  194 (405)
T ss_pred             eeeeec
Confidence            776543

>KOG0647|consensus

Probab=99.75  E-value=2.6e-17  Score=100.87  Aligned_cols=123  Identities=19%  Similarity=0.330  Sum_probs=98.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCC--EEEEEeCCCcEEEEECCCcceeee------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN--YILSAGVDKTTIIWDAASGQCEQQ------   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~s~~~d~~i~~~d~~~~~~~~~------   74 (131)
                      .|+.+|..+++|+-|+.+++||+....+..+..|.++|..+.|-+...  .+++|++|.+++.||.+...++.+      
T Consensus        79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR  158 (347)
T KOG0647|consen   79 CWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER  158 (347)
T ss_pred             EEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce
Confidence            488999999999999999999999778888899999999999988554  899999999999999986432111      


Q ss_pred             -------------------------------------------------------------------------------e
Q psy3840          75 -------------------------------------------------------------------------------F   75 (131)
Q Consensus        75 -------------------------------------------------------------------------------~   75 (131)
                                                                                                     +
T Consensus       159 vYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF  238 (347)
T KOG0647|consen  159 VYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF  238 (347)
T ss_pred             eeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE
Confidence                                                                                           1


Q ss_pred             ecCC---------CCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          76 SFHS---------APALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        76 ~~~~---------~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      +.|+         ..|++++|+|. +.|++.+.||...+||-.....+.+.+.|..++.+
T Consensus       239 kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc  298 (347)
T KOG0647|consen  239 KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC  298 (347)
T ss_pred             EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence            1222         13678899997 66999999999999998777667766666666544

>KOG0772|consensus

Probab=99.75  E-value=7.8e-18  Score=109.44  Aligned_cols=114  Identities=24%  Similarity=0.375  Sum_probs=85.8

Q ss_pred             cccC-CCCEEEEEeCCCeEEEEcCCC--Cceeecc-----cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce---
Q psy3840           3 SSRN-NGSFLATGSYDGYARIWTSDG--SLKSTLG-----QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC---   71 (131)
Q Consensus         3 ~~~~-~~~~l~~~~~d~~i~~~~~~~--~~~~~~~-----~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~---   71 (131)
                      .|+| +.+.+++++.||++++|++..  +....++     +..-+++.++|+|++++++.|..||+|.+|+..+...   
T Consensus       275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~  354 (641)
T KOG0772|consen  275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV  354 (641)
T ss_pred             ccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc
Confidence            3666 457889999999999999872  2222221     2334778999999999999999999999999754321   


Q ss_pred             eeeeecCCC--CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC-eeeEEE
Q psy3840          72 EQQFSFHSA--PALDVDWQSNTS-FASCSTDQHIHVCKLHSD-KPVKSF  116 (131)
Q Consensus        72 ~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~  116 (131)
                      ...-..|..  .++++.|+++|+ |++-+.|+.+++||++.. +++.+.
T Consensus       355 ~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  355 MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence            222234544  799999999987 899999999999999875 455443

>KOG0641|consensus

Probab=99.73  E-value=3e-16  Score=93.47  Aligned_cols=123  Identities=23%  Similarity=0.334  Sum_probs=95.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-------C----------------------------------------------Cc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-------G----------------------------------------------SL   29 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-------~----------------------------------------------~~   29 (131)
                      +|+|+|+++++|++|.+|++...+       |                                              ..
T Consensus        96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~  175 (350)
T KOG0641|consen   96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG  175 (350)
T ss_pred             EecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc
Confidence            689999999999999998876433       1                                              12


Q ss_pred             eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec-------CCCCeEEEEEcCCCc-EEEEeCCCc
Q psy3840          30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-------HSAPALDVDWQSNTS-FASCSTDQH  101 (131)
Q Consensus        30 ~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~-~~~~~~d~~  101 (131)
                      ...+.+|++.|.++ ++-++-.+++|+.|.+|++||++-..++..+..       ....|.+++..|.|+ +++|-.|..
T Consensus       176 ~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss  254 (350)
T KOG0641|consen  176 FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS  254 (350)
T ss_pred             ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence            22344456655554 233577888999999999999998887776542       125688999999998 788889999


Q ss_pred             EEEEeCCCCeeeEEEecccceEEEE
Q psy3840         102 IHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus       102 i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ..+||++.++.++.+.+|...+.++
T Consensus       255 c~lydirg~r~iq~f~phsadir~v  279 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQRFHPHSADIRCV  279 (350)
T ss_pred             eEEEEeeCCceeeeeCCCccceeEE
Confidence            9999999999999999998876543

>KOG0639|consensus

Probab=99.73  E-value=6.3e-18  Score=109.83  Aligned_cols=114  Identities=18%  Similarity=0.275  Sum_probs=98.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC--CC-ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD--GS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~--~~-~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      ..|||+.|++|+.-.++.|||+.  .. ....+......+..++.+||.+..+++..||.|.+||+.+...++.+++|.+
T Consensus       473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD  552 (705)
T KOG0639|consen  473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD  552 (705)
T ss_pred             ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence            46899999999998899999986  22 2223333345678899999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .+.+|..+++|. |-+|+-|++|+-||+++++.++...
T Consensus       553 GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd  590 (705)
T KOG0639|consen  553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD  590 (705)
T ss_pred             CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh
Confidence            999999999986 9999999999999999987766543

>KOG1446|consensus

Probab=99.73  E-value=5e-16  Score=95.45  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=99.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      .|+++|+.+++++.|.++++||.. ++.+.++..+...+..++|....+.++.++.  |.+|++.++.+.+.++-+.+|.
T Consensus        21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~  100 (311)
T KOG1446|consen   21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHK  100 (311)
T ss_pred             EecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCC
Confidence            478999999999999999999976 8888888888778889999877776666655  8899999999999999999999


Q ss_pred             CCeEEEEEcCCC-cEEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          80 APALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        80 ~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      ..|.+++.+|-+ .+++++.|++|++||+|..++...+
T Consensus       101 ~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l  138 (311)
T KOG1446|consen  101 KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL  138 (311)
T ss_pred             ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence            999999999965 4999999999999999976654444

>KOG0301|consensus

Probab=99.73  E-value=5.5e-17  Score=108.30  Aligned_cols=113  Identities=27%  Similarity=0.458  Sum_probs=103.0

Q ss_pred             EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcC
Q psy3840          10 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS   89 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~   89 (131)
                      .+++|+.|.++++|.. ++....+.+|+..|++++.-|++ .+++|+.|.+|++|.-  ++.++++.+|.+.|..+++-+
T Consensus       114 ~~iSgSWD~TakvW~~-~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~  189 (745)
T KOG0301|consen  114 TLISGSWDSTAKVWRI-GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD  189 (745)
T ss_pred             ceEecccccceEEecc-hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec
Confidence            3899999999999986 55666689999999999999987 8899999999999986  778899999999999999999


Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840          90 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        90 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  127 (131)
                      ++.+++++.||.|+.|++ +++.+..+.+|...++++.
T Consensus       190 ~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis  226 (745)
T KOG0301|consen  190 DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS  226 (745)
T ss_pred             CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence            988999999999999999 7999999999999887765

>KOG0308|consensus

Probab=99.72  E-value=2.1e-16  Score=105.05  Aligned_cols=106  Identities=22%  Similarity=0.348  Sum_probs=98.2

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      ++.|..+++|+..+.+++||.. .+.+..+.+|++.|..+..+++|..+++++.||+|++||+...+++.++..|...++
T Consensus       180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW  259 (735)
T ss_pred             CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence            5667789999999999999987 778888999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCC-CcEEEEeCCCcEEEEeCCCC
Q psy3840          84 DVDWQSN-TSFASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        84 ~~~~~~~-~~~~~~~~d~~i~i~d~~~~  110 (131)
                      ++..+|+ ..+.+|+.|+.|+.=|+++.
T Consensus       260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  260 ALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             EEeeCCCcceEEecCCCCcEEecccCCc
Confidence            9999988 45999999999999999874

>KOG0646|consensus

Probab=99.72  E-value=1.5e-16  Score=102.01  Aligned_cols=119  Identities=18%  Similarity=0.262  Sum_probs=97.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC----------CCceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcce
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD----------GSLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQC   71 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~~   71 (131)
                      |+-|+..|++|++||.|.+|.+.          -++...+..|+-+|+.+...+.  ...+++++.|.++++||+..+..
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            67899999999999999999753          3567778889999999998775  45899999999999999987753


Q ss_pred             eee---------------------------------------------------------eecCCC--CeEEEEEcCCCc
Q psy3840          72 EQQ---------------------------------------------------------FSFHSA--PALDVDWQSNTS   92 (131)
Q Consensus        72 ~~~---------------------------------------------------------~~~~~~--~v~~~~~~~~~~   92 (131)
                      +.+                                                         +.+|..  +|++++.+-|+.
T Consensus       211 Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt  290 (476)
T KOG0646|consen  211 LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT  290 (476)
T ss_pred             eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence            322                                                         123444  899999999988


Q ss_pred             -EEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          93 -FASCSTDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        93 -~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                       |++|+.||.++|||+.+.++++++....++
T Consensus       291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp  321 (476)
T KOG0646|consen  291 LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP  321 (476)
T ss_pred             EEEeeCCCCCEEEEecchHHHHHHHhhhccc
Confidence             899999999999999999888877633333

>KOG0643|consensus

Probab=99.72  E-value=4.1e-16  Score=94.43  Aligned_cols=97  Identities=19%  Similarity=0.290  Sum_probs=81.6

Q ss_pred             cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          33 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        33 ~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      +..+...++.+-|.|-+..+++|..||.|..||+++++ .+.....|...|+.+.++++.. +++++.|.+-++||.++.
T Consensus       143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence            33455678889999999999999999999999999985 4555677888999999999976 999999999999999999


Q ss_pred             eeeEEEecccceEEEEeee
Q psy3840         111 KPVKSFEGHTRVYYLAMDL  129 (131)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~  129 (131)
                      +.+.++.........++.+
T Consensus       223 ~v~Kty~te~PvN~aaisP  241 (327)
T KOG0643|consen  223 EVLKTYTTERPVNTAAISP  241 (327)
T ss_pred             eeEEEeeecccccceeccc
Confidence            9999987666555555544

>KOG0772|consensus

Probab=99.71  E-value=1e-16  Score=104.37  Aligned_cols=117  Identities=20%  Similarity=0.319  Sum_probs=90.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC----Cceeecccccc--cEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-ceeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG----SLKSTLGQHKG--PIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~----~~~~~~~~~~~--~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-~~~~~~   75 (131)
                      +|++++..||+|+.||.|.+|+..+    .....-+.|..  .|+|+.|+++|++|++-+.|+++++||++.. +++...
T Consensus       324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             ecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence            5899999999999999999999752    12233356776  8999999999999999999999999999975 444443


Q ss_pred             ec--CCCCeEEEEEcCCCc-EEEEe------CCCcEEEEeCCCCeeeEEEecc
Q psy3840          76 SF--HSAPALDVDWQSNTS-FASCS------TDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        76 ~~--~~~~v~~~~~~~~~~-~~~~~------~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      .+  ...+-+.++|+|+.+ +++|.      ..+.+.+||-.+.+.++.+...
T Consensus       404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence            32  234567789999988 56654      3467999999888887776543

>KOG1407|consensus

Probab=99.71  E-value=5.1e-16  Score=93.72  Aligned_cols=114  Identities=23%  Similarity=0.439  Sum_probs=95.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-C--ceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-S--LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~--~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      +|+.+|..+++|+.|+++.+|++.. +  ......+|.+.+-.++|+| ....+++++.|.++++||.+.+++.......
T Consensus        27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~  106 (313)
T KOG1407|consen   27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK  106 (313)
T ss_pred             EEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc
Confidence            4788999999999999999999872 2  2234578999999999999 7789999999999999999999998887755


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ... .-+.|+|++. ++.++.|..|.+.|.++.+.....+
T Consensus       107 ~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~  145 (313)
T KOG1407|consen  107 GEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ  145 (313)
T ss_pred             Ccc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc
Confidence            444 4588999876 8899999999999999877666544

>KOG1332|consensus

Probab=99.71  E-value=3e-16  Score=93.95  Aligned_cols=105  Identities=30%  Similarity=0.520  Sum_probs=89.3

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC--C--CceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcc--eeeeeec
Q psy3840           6 NNGSFLATGSYDGYARIWTSD--G--SLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQ--CEQQFSF   77 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~--~--~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~--~~~~~~~   77 (131)
                      -.|.+|++++.|++|+++...  +  +.+.++.+|.+|++.++|..  -|..+++++.||.+.+|.-.+++  .......
T Consensus        21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~  100 (299)
T KOG1332|consen   21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA  100 (299)
T ss_pred             hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh
Confidence            358899999999999999976  2  67789999999999999954  79999999999999999988763  2334556


Q ss_pred             CCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCC
Q psy3840          78 HSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        78 ~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      |...+++++|.|.  +. |++++.||.|.|.+.++.
T Consensus       101 h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~  136 (299)
T KOG1332|consen  101 HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS  136 (299)
T ss_pred             hcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence            8889999999997  44 789999999999988754

>KOG1036|consensus

Probab=99.71  E-value=9e-16  Score=94.22  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=91.8

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      |+|.++.|++++.||.+++|++....+.....|..++.+++|.+ ...+++|+.||.++.+|+.+++.. .+..|..++.
T Consensus        21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~   98 (323)
T KOG1036|consen   21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIR   98 (323)
T ss_pred             EcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceE
Confidence            56888899999999999999998555555566899999999986 667899999999999999988753 4556888999


Q ss_pred             EEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEE
Q psy3840          84 DVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        84 ~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~  115 (131)
                      ++.+.+. +.+++|++|+.|++||.+.......
T Consensus        99 ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~  131 (323)
T KOG1036|consen   99 CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT  131 (323)
T ss_pred             EEEeeccCCeEEEcccCccEEEEeccccccccc
Confidence            9999986 6699999999999999996444333

>KOG0299|consensus

Probab=99.71  E-value=2e-16  Score=101.37  Aligned_cols=118  Identities=21%  Similarity=0.363  Sum_probs=101.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +.++|+.+|++|+.|..|.+|+.. .+++..+.+|.+.|.+++|......+++++.|+++++|++.....+.++.+|...
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~  288 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG  288 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence            468999999999999999999987 7888889999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCcEE-EEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          82 ALDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        82 v~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      |..+.-..-.+.+ .|+.|+++++|++..... ..+.++..
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~  328 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEG  328 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEeccccce-eeeeCCCC
Confidence            9999877766754 455999999999954333 33444543

>KOG0641|consensus

Probab=99.70  E-value=1.9e-15  Score=90.11  Aligned_cols=105  Identities=28%  Similarity=0.449  Sum_probs=91.6

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-CCceeeccc--c-----cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ--H-----KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~--~-----~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      +=++.++++|++|.+|++||+. ...+.++..  |     ...|.+++..|.|+++++|-.|....+||++.++.++.+.
T Consensus       191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~  270 (350)
T KOG0641|consen  191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH  270 (350)
T ss_pred             EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence            4468899999999999999987 445544432  2     2568899999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                      .|...|.++.|+|... +++++.|..|++-|+..
T Consensus       271 phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            9999999999999976 89999999999999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=2.9e-15  Score=89.54  Aligned_cols=110  Identities=19%  Similarity=0.386  Sum_probs=85.5

Q ss_pred             cccCCCCEEEEE--eCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcceeeeeec
Q psy3840           3 SSRNNGSFLATG--SYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~--~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~~~~~~~~   77 (131)
                      +|+|+++.+++.  ..+..|.+||++++.+..+.  ...+..+.|+|+|++++.++.   .|.+.+||.++.+.+.....
T Consensus        66 ~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~  143 (194)
T PF08662_consen   66 AWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH  143 (194)
T ss_pred             EECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc
Confidence            589999987665  34678999999877776664  456788999999999999874   46799999998888766553


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeC------CCcEEEEeCCCCeeeEEEe
Q psy3840          78 HSAPALDVDWQSNTS-FASCST------DQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~------d~~i~i~d~~~~~~~~~~~  117 (131)
                        ..+..++|+|+|+ ++++..      |+.++||+.. |+.+....
T Consensus       144 --~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  144 --SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             --CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence              3578999999998 666553      6788999985 76666543

>KOG0301|consensus

Probab=99.70  E-value=1.1e-15  Score=102.30  Aligned_cols=112  Identities=21%  Similarity=0.279  Sum_probs=95.5

Q ss_pred             EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcC
Q psy3840          10 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS   89 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~   89 (131)
                      .+++|+.|.+|++|.- ++.+.++.+|++.|+.+++-++. .+++++.||.|++|++ +++++..+.+|..-+.++....
T Consensus       153 ~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~  229 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL  229 (745)
T ss_pred             cEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence            8999999999999996 88889999999999999998754 4799999999999998 8889999999999999999555


Q ss_pred             C-CcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          90 N-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        90 ~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      + +.+++++.|++++||+..  ++.+.+..+...+..+
T Consensus       230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa  265 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSA  265 (745)
T ss_pred             CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEE
Confidence            4 559999999999999876  6777766555444443

>KOG1009|consensus

Probab=99.70  E-value=3.8e-16  Score=98.88  Aligned_cols=117  Identities=20%  Similarity=0.394  Sum_probs=98.1

Q ss_pred             CEEEEEeCCCeEEEEcCC----CC------ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC--------C--
Q psy3840           9 SFLATGSYDGYARIWTSD----GS------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA--------S--   68 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~----~~------~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~--------~--   68 (131)
                      +++++|+.|..|++|-++    ++      ....+..|+..+.++.|+|+|..+++|+.+|.+.+|-..        +  
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~  106 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA  106 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence            399999999999999765    21      234567799999999999999999999999999999765        2  


Q ss_pred             ------cceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          69 ------GQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        69 ------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                            ......+.+|...+..++|+|++. +++++-|+.+++||+..|+.+.....|...+..
T Consensus       107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg  170 (434)
T KOG1009|consen  107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG  170 (434)
T ss_pred             hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence                  122345567888999999999988 889999999999999999999999888876643

>KOG2394|consensus

Probab=99.68  E-value=2.8e-16  Score=102.72  Aligned_cols=86  Identities=24%  Similarity=0.425  Sum_probs=77.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|||++||+.++||.+||||.. .+.+...+..-+...|++|+|||+++++|+.|.-+.+|.+...+.+..-++|+.-
T Consensus       297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW  376 (636)
T KOG2394|consen  297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW  376 (636)
T ss_pred             eEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc
Confidence            589999999999999999999987 4444555666678999999999999999999999999999999999998899999


Q ss_pred             eEEEEEc
Q psy3840          82 ALDVDWQ   88 (131)
Q Consensus        82 v~~~~~~   88 (131)
                      |..++|+
T Consensus       377 Vs~VaFD  383 (636)
T KOG2394|consen  377 VSVVAFD  383 (636)
T ss_pred             eeeEeec
Confidence            9999987

>KOG1539|consensus

Probab=99.68  E-value=4.2e-15  Score=101.27  Aligned_cols=121  Identities=19%  Similarity=0.282  Sum_probs=100.1

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeec---ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee-------
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTL---GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE-------   72 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~---~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~-------   72 (131)
                      .++-|++.+.|...|.|.+||++ |-....+   ..|.++|+.++.+.-++.+++++.+|.+++||..+...+       
T Consensus       456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~  535 (910)
T KOG1539|consen  456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS  535 (910)
T ss_pred             EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC
Confidence            46779999999999999999998 4444444   479999999999999999999999999999999865421       


Q ss_pred             ----------------------------------eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          73 ----------------------------------QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        73 ----------------------------------~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                                                        +.+.+|...+++++|+|||+ +++++-|++|++||+.++.++-.+.
T Consensus       536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~  615 (910)
T KOG1539|consen  536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL  615 (910)
T ss_pred             CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence                                              22346789999999999999 8999999999999999998887765


Q ss_pred             cccceEE
Q psy3840         118 GHTRVYY  124 (131)
Q Consensus       118 ~~~~~~~  124 (131)
                      -......
T Consensus       616 vd~~~~s  622 (910)
T KOG1539|consen  616 VDSPCTS  622 (910)
T ss_pred             cCCccee
Confidence            4444333

>KOG0299|consensus

Probab=99.68  E-value=2.8e-16  Score=100.73  Aligned_cols=124  Identities=20%  Similarity=0.298  Sum_probs=106.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCce-----------------eec-ccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLK-----------------STL-GQHKGPIFALKWNKRGNYILSAGVDKTTII   63 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~-----------------~~~-~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~   63 (131)
                      +++|+..+.++++.+++|.-|++. ++..                 ... ..|...+.+++.+++++++++|+.|..+.+
T Consensus       149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I  228 (479)
T KOG0299|consen  149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI  228 (479)
T ss_pred             EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE
Confidence            368899999999999999999865 2211                 111 267888999999999999999999999999


Q ss_pred             EECCCcceeeeeecCCCCeEEEEEcCCC-cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          64 WDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        64 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |+.++.+.+..+.+|.+.|.+++|-... .+++++.|+.+++|++.....+.++.+|+..+..+
T Consensus       229 w~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  229 WDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             ecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            9999999999999999999999997664 49999999999999999888888888888877554

>KOG0293|consensus

Probab=99.68  E-value=1.7e-15  Score=96.57  Aligned_cols=125  Identities=18%  Similarity=0.266  Sum_probs=103.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      +.++||.++++.+.|..|++|+.+...-..+..-..+|++...+.+++++++.-.+..+++||+++.+.++.+.+|+..-
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~  440 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH  440 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence            35789999999999999999998743333344455689999999999999999999999999999999999999887654


Q ss_pred             EEE--EEcC-C-CcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840          83 LDV--DWQS-N-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        83 ~~~--~~~~-~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  127 (131)
                      .-+  +|.. + ..+++|+.|++|+||+.++++++.++.+|...++++.
T Consensus       441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS  489 (519)
T ss_pred             eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence            433  3433 2 2389999999999999999999999999999887764

>KOG0294|consensus

Probab=99.66  E-value=5.6e-15  Score=91.25  Aligned_cols=115  Identities=22%  Similarity=0.233  Sum_probs=97.5

Q ss_pred             EEEEEeCCCeEEEEcCCC-------------CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840          10 FLATGSYDGYARIWTSDG-------------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      .|++|+....|.-+++.-             .+...+..|.+.+++++.+  +.++++|+.|.+|++||+++...+..+-
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            477888887777666541             1245567799999999984  8999999999999999999999999999


Q ss_pred             cCCCCeEEEEEcCCC---cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          77 FHSAPALDVDWQSNT---SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .|.+.++++.|.++.   .|++|+.||.|.+|+....+++.++++|...++.+
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l  133 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL  133 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee
Confidence            999999999998873   59999999999999999999999999998776543

>KOG4283|consensus

Probab=99.66  E-value=1.7e-15  Score=93.08  Aligned_cols=105  Identities=25%  Similarity=0.531  Sum_probs=88.1

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCE-EEEEeCCCcEEEEECCCc-ceee----------
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNY-ILSAGVDKTTIIWDAASG-QCEQ----------   73 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~-~~s~~~d~~i~~~d~~~~-~~~~----------   73 (131)
                      ...++|+|..+-.|++.|+. |...+.+.+|.+.|.++.|+|...+ +++|+.||.+++||++.- -+..          
T Consensus       157 sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~  236 (397)
T KOG4283|consen  157 SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP  236 (397)
T ss_pred             cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC
Confidence            35688899889999999987 8889999999999999999997765 668899999999999853 2222          


Q ss_pred             ----eeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          74 ----QFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        74 ----~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                          .-..|.+.+..++|..++. +++++.|..+++|+..+|+
T Consensus       237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence                2235667899999999987 8999999999999988764

>KOG0270|consensus

Probab=99.65  E-value=1.5e-15  Score=97.03  Aligned_cols=103  Identities=27%  Similarity=0.535  Sum_probs=87.1

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-----------CCce-----------eecccccccEEEEEEcC-CCCEEEEEeCCCcEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-----------GSLK-----------STLGQHKGPIFALKWNK-RGNYILSAGVDKTTII   63 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-----------~~~~-----------~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~   63 (131)
                      .|+++|.|+-+..|.|||+.           |...           ..-.+|++.+..|.|+. -.+.++||+.|.++++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            47899999999999999975           1100           11235888888999888 4568899999999999


Q ss_pred             EECCCcceeeeeecCCCCeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCC
Q psy3840          64 WDAASGQCEQQFSFHSAPALDVDWQSN-TS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        64 ~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~  109 (131)
                      ||+.++++..++..|...|.++.|+|. .. +++|+.|+++.+.|.|.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            999999999999999999999999996 44 89999999999999993

>KOG0649|consensus

Probab=99.65  E-value=2.2e-14  Score=86.27  Aligned_cols=112  Identities=15%  Similarity=0.209  Sum_probs=86.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-   81 (131)
                      ..|..+-++.++.|+.++-||++ |+..+++++|++.+.++.-......+++|+.||++++||+++++.+..+.....+ 
T Consensus       122 ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~  201 (325)
T KOG0649|consen  122 LDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN  201 (325)
T ss_pred             eccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChh
Confidence            34555556666689999999998 8888999999999999998677778999999999999999999988777532211 


Q ss_pred             ---------eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          82 ---------ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        82 ---------v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                               +-+++  -+...+.++....+.+|++++.++...+.
T Consensus       202 ~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  202 LLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             hcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCceEEEe
Confidence                     22332  23346667777899999999988777664

>KOG0278|consensus

Probab=99.65  E-value=5.4e-15  Score=89.10  Aligned_cols=108  Identities=17%  Similarity=0.294  Sum_probs=81.6

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee-ecCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-SFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~-~~~~~~   81 (131)
                      ++++|++|.++ ..+.|.+||.. .+.++.+ .....|.+...+|+-..++.|+.|..++-||..+++.+..+ ++|.++
T Consensus       192 vs~dG~ilTia-~gssV~Fwdaksf~~lKs~-k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp  269 (334)
T KOG0278|consen  192 VSQDGRILTIA-YGSSVKFWDAKSFGLLKSY-KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP  269 (334)
T ss_pred             eccCCCEEEEe-cCceeEEeccccccceeec-cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc
Confidence            34555555554 23456666654 2222222 23456777788898899999999999999999999998886 789999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      |.++.|+|+|. .++|+.||+|++|....++..
T Consensus       270 VhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  270 VHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             eEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99999999998 799999999999998766543

>KOG2394|consensus

Probab=99.65  E-value=3.8e-15  Score=97.54  Aligned_cols=123  Identities=15%  Similarity=0.205  Sum_probs=99.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---C--------------------------CceeecccccccEEEEEEcCCCCEEE
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---G--------------------------SLKSTLGQHKGPIFALKWNKRGNYIL   53 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~   53 (131)
                      |..-+...++++-.+|.+.+||..   +                          .++.......+.|...+|+|||++++
T Consensus       227 Wvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA  306 (636)
T KOG2394|consen  227 WVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLA  306 (636)
T ss_pred             EEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEE
Confidence            444456677777789999999654   0                          01111111345778899999999999


Q ss_pred             EEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          54 SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        54 s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      +.+.||.+++||..+.+.+..++..-+...|++|+||++ +++|+.|.-|.||.+...+.+..-++|..-|..
T Consensus       307 ~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~  379 (636)
T KOG2394|consen  307 TVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV  379 (636)
T ss_pred             EEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence            999999999999999988888777778899999999999 899999999999999999999999999886643

>KOG0639|consensus

Probab=99.63  E-value=2.2e-15  Score=98.29  Aligned_cols=117  Identities=16%  Similarity=0.272  Sum_probs=98.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +.+||.+..++++.||.|.+||+. ...++.+++|++.+.|+.++++|..+-+|+-|.+++.||+++++.+.... ....
T Consensus       516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQ  594 (705)
T KOG0639|consen  516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQ  594 (705)
T ss_pred             hcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhh
Confidence            568999999999999999999997 66788999999999999999999999999999999999999998766544 4568


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      |.++-++|++. ++.|..++.+.+......+. ..+..|..
T Consensus       595 IfSLg~cP~~dWlavGMens~vevlh~skp~k-yqlhlheS  634 (705)
T KOG0639|consen  595 IFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQLHLHES  634 (705)
T ss_pred             heecccCCCccceeeecccCcEEEEecCCccc-eeeccccc
Confidence            99999999987 88999999988887664433 33333443

>KOG4378|consensus

Probab=99.63  E-value=1.1e-14  Score=94.92  Aligned_cols=122  Identities=17%  Similarity=0.276  Sum_probs=99.1

Q ss_pred             ccCCC-CEEEEEeCCCeEEEEcCCCC-c-eeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           4 SRNNG-SFLATGSYDGYARIWTSDGS-L-KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         4 ~~~~~-~~l~~~~~d~~i~~~~~~~~-~-~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      |++.. ..|.+++++|.|.+||+.+. + ..-...|..+...++|+| +..++++.+.|..|.+||.+..+....+.. .
T Consensus       172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~  250 (673)
T KOG4378|consen  172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-S  250 (673)
T ss_pred             cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-c
Confidence            45544 45567889999999999843 3 344567999999999999 677888999999999999998777666654 4


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~  126 (131)
                      .+...++|.++|. |+.|...|.|..||+|.. .++.++..|...+.++
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v  299 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV  299 (673)
T ss_pred             CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence            6889999999988 788889999999999965 6788888888776543

>KOG0642|consensus

Probab=99.62  E-value=9.4e-15  Score=95.87  Aligned_cols=111  Identities=21%  Similarity=0.347  Sum_probs=95.0

Q ss_pred             ccccCCCCEEEEEeCCCeEEEEcCC---------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc---
Q psy3840           2 QSSRNNGSFLATGSYDGYARIWTSD---------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG---   69 (131)
Q Consensus         2 ~~~~~~~~~l~~~~~d~~i~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~---   69 (131)
                      .+|++...-|++++.||++.+|+++         -+++.++.+|.++|.|++..+++..+++|+.||+|+.|++...   
T Consensus       300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp  379 (577)
T KOG0642|consen  300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP  379 (577)
T ss_pred             hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence            3577888999999999999999983         3567889999999999999999999999999999999976521   


Q ss_pred             -------ceeeeeecCCCCeEEEEEcCCC-cEEEEeCCCcEEEEeCCCCee
Q psy3840          70 -------QCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        70 -------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~  112 (131)
                             .....+.+|.+.++.+++++.. +|++++.||+++.|+.....+
T Consensus       380 ~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  380 DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence                   2235577899999999999874 499999999999999876655

>KOG0288|consensus

Probab=99.62  E-value=1.7e-15  Score=96.20  Aligned_cols=116  Identities=20%  Similarity=0.310  Sum_probs=96.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      |.+++..++++++|+.+++|++. .....++.+|++.|+++.|......+++|+.|.++++||+.+..+..+... ...+
T Consensus       227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~c  305 (459)
T KOG0288|consen  227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQC  305 (459)
T ss_pred             ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccc
Confidence            56788899999999999999997 777889999999999999988777799999999999999999887766543 3445


Q ss_pred             EEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          83 LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        83 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      ..|... ...++++-.|++|++||.++..+..+...+..
T Consensus       306 nDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~  343 (459)
T KOG0288|consen  306 NDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGGR  343 (459)
T ss_pred             cceEec-ceeeeecccccceEEEeccCCceeeEeecCcc
Confidence            555554 22378888899999999999999888877763

>KOG0771|consensus

Probab=99.62  E-value=1.7e-14  Score=91.69  Aligned_cols=121  Identities=20%  Similarity=0.290  Sum_probs=97.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEc-CCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF------   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~------   75 (131)
                      +++.+|..+++|+.||.+|+|+ .+...+.....|...|.++.|+||++.+++.+.| ..++|+.+++..+...      
T Consensus       151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~  229 (398)
T KOG0771|consen  151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKD  229 (398)
T ss_pred             EEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccc
Confidence            5788999999999999999999 4466667778899999999999999999999999 8999999877211100      


Q ss_pred             -------------------------------------e-----------cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEe
Q psy3840          76 -------------------------------------S-----------FHSAPALDVDWQSNTS-FASCSTDQHIHVCK  106 (131)
Q Consensus        76 -------------------------------------~-----------~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d  106 (131)
                                                           .           .....+.+++.+++|+ ++.|+-||.|.|++
T Consensus       230 ~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~  309 (398)
T KOG0771|consen  230 EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYD  309 (398)
T ss_pred             hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence                                                 0           0123688999999999 78899999999999


Q ss_pred             CCCCeeeEEE-ecccceEE
Q psy3840         107 LHSDKPVKSF-EGHTRVYY  124 (131)
Q Consensus       107 ~~~~~~~~~~-~~~~~~~~  124 (131)
                      ..+.+.++.. +.|...++
T Consensus       310 ~~~lq~~~~vk~aH~~~VT  328 (398)
T KOG0771|consen  310 AKSLQRLQYVKEAHLGFVT  328 (398)
T ss_pred             eceeeeeEeehhhheeeee
Confidence            9988877765 45665443

>KOG0290|consensus

Probab=99.62  E-value=1.8e-14  Score=88.40  Aligned_cols=105  Identities=18%  Similarity=0.350  Sum_probs=86.2

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCC----CceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcc---------
Q psy3840           5 RNNGSFLATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQ---------   70 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~---------   70 (131)
                      --+.++|.+.+-|.+..+||++.    .....+..|...|..++|...+ ..+++.+.||++++||++.-+         
T Consensus       160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p  239 (364)
T KOG0290|consen  160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP  239 (364)
T ss_pred             cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC
Confidence            34678999999999999999872    2355678899999999999854 578899999999999998532         


Q ss_pred             ---------------------------------------eeeeeecCCCCeEEEEEcCCC--cEEEEeCCCcEEEEeCCC
Q psy3840          71 ---------------------------------------CEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHS  109 (131)
Q Consensus        71 ---------------------------------------~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~  109 (131)
                                                             .+..++.|...|+.++|.|..  .+.++++|..+.+||+.+
T Consensus       240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence                                                   122345788899999999974  399999999999999964

>KOG0300|consensus

Probab=99.62  E-value=3e-15  Score=93.03  Aligned_cols=119  Identities=25%  Similarity=0.401  Sum_probs=100.8

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC------CCc-----------
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA------ASG-----------   69 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~------~~~-----------   69 (131)
                      ...+.+++.|.+.++|.++ +.++..+.+|.+.|.+++|++.+.++++++.|++..||..      ...           
T Consensus       160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE  239 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE  239 (481)
T ss_pred             CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence            4578889999999999998 9999999999999999999999999999999999999962      110           


Q ss_pred             -----------------------ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          70 -----------------------QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        70 -----------------------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                                             .++..+.+|...|.+..|-..++ +++++.|++..+||+++++.+..+.+|....+.
T Consensus       240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH  319 (481)
T KOG0300|consen  240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTH  319 (481)
T ss_pred             hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccc
Confidence                                   02344567777888888887766 899999999999999999999999998876554


Q ss_pred             E
Q psy3840         126 A  126 (131)
Q Consensus       126 ~  126 (131)
                      +
T Consensus       320 c  320 (481)
T KOG0300|consen  320 C  320 (481)
T ss_pred             c
Confidence            3

>KOG0268|consensus

Probab=99.62  E-value=1.3e-15  Score=95.53  Aligned_cols=111  Identities=12%  Similarity=0.188  Sum_probs=95.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC-C
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-S   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-~   79 (131)
                      +|+|.+-.+.+|+.|..+..||..  ..++....+|...|..++|+|.|+-+++|+.|.+|+||..+.+.....+... -
T Consensus       236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRM  315 (433)
T KOG0268|consen  236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRM  315 (433)
T ss_pred             ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhh
Confidence            588988888999999999999987  7888889999999999999999999999999999999999887655444332 2


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      ..|.++.|+-|.+ +++|++|+.|++|.-+..+.+
T Consensus       316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             heeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            4689999999988 889999999999987654443

>KOG1408|consensus

Probab=99.61  E-value=1.6e-14  Score=97.72  Aligned_cols=106  Identities=25%  Similarity=0.354  Sum_probs=96.8

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc---ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ---HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~---~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      ..|+..++++++.|..|++|+++ ++.++.+++   |++....+..+|.|.++++...|.++.++|.-+++++..+.+|.
T Consensus       604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs  683 (1080)
T KOG1408|consen  604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS  683 (1080)
T ss_pred             eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence            45778999999999999999998 788877765   66778888999999999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                      ..|+.+.|.+|.+ |++.+.||.|.||.+..
T Consensus       684 E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  684 EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hheeeeeecccchhheeecCCceEEEEECch
Confidence            9999999999976 99999999999998753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.61  E-value=1.6e-13  Score=86.50  Aligned_cols=119  Identities=13%  Similarity=0.120  Sum_probs=86.8

Q ss_pred             cccCCCCEEEEEe-CCCeEEEEcCC-CCceeeccccc-----c--cEEEEEEcCCCCEEEEE-eCCCcEEEEECCCccee
Q psy3840           3 SSRNNGSFLATGS-YDGYARIWTSD-GSLKSTLGQHK-----G--PIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~-~d~~i~~~~~~-~~~~~~~~~~~-----~--~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~~~~~~   72 (131)
                      +|+++++.+++++ .++.|++||+. ++.+..+..+.     .  ....++|+|+++.++.+ ..++.+.+||+++++..
T Consensus       163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            4788999886554 58999999987 44434332211     1  23467899999985544 45678999999988876


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEE-eCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASC-STDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      ..+. ....+.+++|+|++. ++++ ..++.|.+||+++++.+..+.....+
T Consensus       243 ~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  293 (300)
T TIGR03866       243 DYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP  293 (300)
T ss_pred             EEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence            6554 345788999999987 6554 46899999999999999888765544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273|consensus

Probab=99.61  E-value=9e-15  Score=90.60  Aligned_cols=78  Identities=18%  Similarity=0.356  Sum_probs=72.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          40 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        40 i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..|+.|++.|.++++|..+|.+.+||+.+...-+.+.+|..+|++++|+++|+ |++++.|..|.+||+..|.++..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            68899999999999999999999999999887788889999999999999988 8999999999999999998887764

>KOG1274|consensus

Probab=99.60  E-value=3.5e-14  Score=97.63  Aligned_cols=116  Identities=20%  Similarity=0.372  Sum_probs=99.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec----
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~----   77 (131)
                      +++-+|++++.|+.|-.|++-+.. ......+++|.++|.++.++|+++.+++.+-||.+++||+.++.+...+..    
T Consensus       103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~  182 (933)
T KOG1274|consen  103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD  182 (933)
T ss_pred             EEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc
Confidence            467889999999999999999976 677788999999999999999999999999999999999999876655432    


Q ss_pred             ----CCCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          78 ----HSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        78 ----~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                          ....+..++|+|+ ++++....|+.|.+|+...++....+..
T Consensus       183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~  228 (933)
T KOG1274|consen  183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD  228 (933)
T ss_pred             ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence                1345678899999 5699999999999999988877666643

>KOG2096|consensus

Probab=99.60  E-value=1.6e-14  Score=89.65  Aligned_cols=103  Identities=15%  Similarity=0.352  Sum_probs=89.4

Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC---Cc-----ceeeeeec
Q psy3840           6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA---SG-----QCEQQFSF   77 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~---~~-----~~~~~~~~   77 (131)
                      .++.+|++++.|..|.+|++.|+.+..+..........+.+|+|+.+++++--.-+++|.+-   .|     ..+..+.+
T Consensus       197 ~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG  276 (420)
T KOG2096|consen  197 GNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG  276 (420)
T ss_pred             CCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence            45688999999999999999999988888777777888999999999999998889999863   22     34566789


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                      |...|...+|+|+.. .++.+.||++++||+.
T Consensus       277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             chhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            999999999999965 9999999999999975

>KOG0288|consensus

Probab=99.60  E-value=6.4e-14  Score=89.22  Aligned_cols=111  Identities=21%  Similarity=0.247  Sum_probs=90.2

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC----CCCe
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH----SAPA   82 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~----~~~v   82 (131)
                      ...+++|-.|++|++||.. ..+...... .+.|+++..++++..+++.+.|.++.+.|+++.+....+...    ....
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw  390 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRSADKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW  390 (459)
T ss_pred             ceeeeecccccceEEEeccCCceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence            3456677789999999977 444444444 459999999999999999999999999999998877766532    2347


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      +.+.|+|++. +++|+.||.|+||++.++++...+...
T Consensus       391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s  428 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS  428 (459)
T ss_pred             ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC
Confidence            8899999987 789999999999999999888777643

>KOG1036|consensus

Probab=99.60  E-value=5.5e-14  Score=86.53  Aligned_cols=103  Identities=18%  Similarity=0.315  Sum_probs=86.2

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD   86 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~   86 (131)
                      +...+++|+-||.|+.+|++......+..|..++.|+..++....+++|++|++|++||.+.......+.. ...|.++.
T Consensus        64 d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~  142 (323)
T KOG1036|consen   64 DESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMD  142 (323)
T ss_pred             CCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEe
Confidence            35678999999999999999877788889999999999999888999999999999999998555555443 34777776


Q ss_pred             EcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840          87 WQSNTSFASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        87 ~~~~~~~~~~~~d~~i~i~d~~~~~  111 (131)
                      ... .+|+.|+.+..+.+||+|+..
T Consensus       143 v~g-~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen  143 VSG-NRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             ccC-CEEEEeecCceEEEEEccccc
Confidence            643 358889999999999998753

>KOG2048|consensus

Probab=99.59  E-value=4.1e-14  Score=94.58  Aligned_cols=124  Identities=19%  Similarity=0.262  Sum_probs=98.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCce---eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee---
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLK---STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---   76 (131)
                      +.+|.+..++.|++||.+..++...+.+   ..+...++.+.++.|+|++..++.|+.||.|++||..++..+....   
T Consensus       117 ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~  196 (691)
T KOG2048|consen  117 AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL  196 (691)
T ss_pred             EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecc
Confidence            3578889999999999777777653222   2334456899999999999999999999999999999887665221   


Q ss_pred             ----c-CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          77 ----F-HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        77 ----~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                          . ...-|+++.+-.++.+++|+..|.|++||...+..++++..|...+.+.
T Consensus       197 d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L  251 (691)
T KOG2048|consen  197 DRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL  251 (691)
T ss_pred             cccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence                1 2234788888888999999999999999999999999988887766543

>KOG2048|consensus

Probab=99.59  E-value=1.4e-13  Score=92.05  Aligned_cols=111  Identities=14%  Similarity=0.246  Sum_probs=93.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee--eeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~--~~~~~~~   79 (131)
                      +|+ ++.+|++.+-+|.|.-||+. .++........+.|++++.+|.+..++.|+.||.++.++...++..  ..+...+
T Consensus        76 ~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~  154 (691)
T KOG2048|consen   76 AWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK  154 (691)
T ss_pred             EEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc
Confidence            355 46777888889999999987 7888888888899999999999999999999998878887776544  2344456


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeE
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                      +++.+++|+|++. +++|+.||.|++||..+++.+.
T Consensus       155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             ceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence            8999999999987 9999999999999999987766

>KOG0307|consensus

Probab=99.59  E-value=3e-15  Score=104.49  Aligned_cols=112  Identities=21%  Similarity=0.391  Sum_probs=91.0

Q ss_pred             EEEEEeCCCeEEEEcCC-------CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeec--CC
Q psy3840          10 FLATGSYDGYARIWTSD-------GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSF--HS   79 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~-------~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~--~~   79 (131)
                      .|+.|..||.|-+||..       ...+.+...|++.|..+.|++ .++++++|+.+|.|.+||+.+.+.......  ..
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~  161 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP  161 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence            48888999999999965       234566778999999999999 666999999999999999998655544422  34


Q ss_pred             CCeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          80 APALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        80 ~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      ..|.+++|+.. .+ |++++.++.+.|||+|..+++..+..+..
T Consensus       162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~  205 (1049)
T KOG0307|consen  162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG  205 (1049)
T ss_pred             ccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC
Confidence            67999999876 33 88999999999999999888877766555

>KOG1063|consensus

Probab=99.59  E-value=1.2e-14  Score=97.44  Aligned_cols=108  Identities=19%  Similarity=0.346  Sum_probs=90.9

Q ss_pred             cccCCCCEEEEEeCCC-----eEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce----e
Q psy3840           3 SSRNNGSFLATGSYDG-----YARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC----E   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~-----~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~----~   72 (131)
                      +.+|+++++|+++...     .|++|+.. -..+..+.+|.-.|+.++|+|+++++++.+.|+++.+|...+...    .
T Consensus       532 ~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f  611 (764)
T KOG1063|consen  532 AISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF  611 (764)
T ss_pred             EecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh
Confidence            3588999999998755     38899986 445557889999999999999999999999999999998754321    2


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      ...+.|+.-|++..|+|+.+ ++|++.|.+|.+|.....
T Consensus       612 a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  612 ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            33567888899999999987 999999999999988766

>KOG2110|consensus

Probab=99.59  E-value=1.6e-13  Score=86.30  Aligned_cols=106  Identities=21%  Similarity=0.349  Sum_probs=85.7

Q ss_pred             cCCCCEEEEEe--CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCc-EEEEECCCcceeeeeecCC-
Q psy3840           5 RNNGSFLATGS--YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT-TIIWDAASGQCEQQFSFHS-   79 (131)
Q Consensus         5 ~~~~~~l~~~~--~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~-i~~~d~~~~~~~~~~~~~~-   79 (131)
                      ++.+.+++.=+  ..|.|.+||.. -+++..+..|.+++.+++|+++|.++++++..|+ |+++.+.+|+.+..++... 
T Consensus       138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~  217 (391)
T KOG2110|consen  138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY  217 (391)
T ss_pred             CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce
Confidence            33444666532  26789999976 5677788899999999999999999999999987 6799999999998887433 


Q ss_pred             -CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          80 -APALDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        80 -~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                       ..+.+++|+|+++ |.+.+..++|++|.+..-
T Consensus       218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence             3578999999988 566677789999988643

>KOG1007|consensus

Probab=99.58  E-value=4.1e-14  Score=86.86  Aligned_cols=120  Identities=20%  Similarity=0.390  Sum_probs=92.3

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCc-eeec-----ccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcceeee
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSL-KSTL-----GQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~-~~~~-----~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~~~~~   74 (131)
                      |.|++..+++-. |..|.+|++. +.. +..+     ..+....++-+|+|  +++.+++. .|+++..||+++.+....
T Consensus       131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s  208 (370)
T KOG1007|consen  131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS  208 (370)
T ss_pred             EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc
Confidence            678888888864 8889999986 222 2222     22556677889999  77777665 788999999998776655


Q ss_pred             ee-cCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEE
Q psy3840          75 FS-FHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYL  125 (131)
Q Consensus        75 ~~-~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~  125 (131)
                      +. .|...+..+.|+|+.+  |++|++|+.|++||+|.. .++.++.+|..-+..
T Consensus       209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            54 5777899999999865  899999999999999865 578888888766544

>KOG2096|consensus

Probab=99.57  E-value=5.9e-14  Score=87.23  Aligned_cols=123  Identities=14%  Similarity=0.239  Sum_probs=94.4

Q ss_pred             CccccCCCCEEEEEeCCCeEEEEcCC----C-----CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--
Q psy3840           1 MQSSRNNGSFLATGSYDGYARIWTSD----G-----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--   69 (131)
Q Consensus         1 ~~~~~~~~~~l~~~~~d~~i~~~~~~----~-----~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~--   69 (131)
                      +.+.||+|+++++++-...|++|.+-    |     ..+..+++|...|..++|+++...+++.+.||++++||..-.  
T Consensus       233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence            35789999999999988889999853    2     345678999999999999999999999999999999997631  


Q ss_pred             -----ceeeee----ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe-cccceE
Q psy3840          70 -----QCEQQF----SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE-GHTRVY  123 (131)
Q Consensus        70 -----~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~  123 (131)
                           +.+...    .........+..+|++..+..+....+++|..++++....++ .|...+
T Consensus       313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~I  376 (420)
T KOG2096|consen  313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTI  376 (420)
T ss_pred             cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCce
Confidence                 222221    122344558999999997777777889999998886655543 354443

>KOG2445|consensus

Probab=99.56  E-value=2.3e-13  Score=84.08  Aligned_cols=108  Identities=24%  Similarity=0.379  Sum_probs=86.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---C--CceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---G--SLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAAS-------   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~--~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~-------   68 (131)
                      .|.+.|+++++|+.|++|++||..   +  .....-+.|.+.|..+.|.+  =|+.+++++.|+++.+|.=..       
T Consensus        20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~   99 (361)
T KOG2445|consen   20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG   99 (361)
T ss_pred             eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc
Confidence            477889999999999999999964   2  23344567999999999965  578999999999999997521       


Q ss_pred             --cceeeeeecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCC
Q psy3840          69 --GQCEQQFSFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        69 --~~~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~  110 (131)
                        .....++...+..|+++.|.|.  |. +++++.||.++||+....
T Consensus       100 ~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen  100 RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence              1234556667789999999997  44 899999999999986544

>KOG0322|consensus

Probab=99.56  E-value=4.3e-14  Score=85.71  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=63.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCC-CcEEEEeCCCcEEEEeC
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKL  107 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~  107 (131)
                      .+..+.+.||++.++++++|+.+++|..++..++..+..|...|++++|+|+ +.+++++.|++|.+|++
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            3456777899999999999999999999999999999999999999999999 45899999999999986

>KOG3881|consensus

Probab=99.56  E-value=1.2e-13  Score=87.50  Aligned_cols=110  Identities=14%  Similarity=0.190  Sum_probs=98.7

Q ss_pred             CCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee-eecCCCCeEE
Q psy3840           8 GSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAPALD   84 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~v~~   84 (131)
                      ...+++++.-+.+++||..  .+++..+...+.+++++...|+++.+++|...+.+..||++.++.... +.+..+.+.+
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs  295 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS  295 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence            6889999999999999987  677788888888999999999999999999999999999999998877 7888899999


Q ss_pred             EEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          85 VDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        85 ~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +..+|... +++++-|+.++|+|+++.+.+....
T Consensus       296 ih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  296 IHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             EEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            99999977 8999999999999999866665543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.56  E-value=7.3e-13  Score=83.53  Aligned_cols=108  Identities=12%  Similarity=0.124  Sum_probs=83.4

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~-~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      +..+++++.|+.+++||.. ++.+..+..+. .+..++|+|++..+ ++++.++.+++||..+++....+..+. .+..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence            3567888999999999986 66666666544 35789999999876 566778999999999988776665433 35678


Q ss_pred             EEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          86 DWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        86 ~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .++|+++ + +++..++.+++||+++.+.+..+.
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~  112 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP  112 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee
Confidence            8999976 5 445568899999999887776665

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0268|consensus

Probab=99.56  E-value=5.2e-14  Score=88.54  Aligned_cols=107  Identities=24%  Similarity=0.412  Sum_probs=83.1

Q ss_pred             CEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc------------------
Q psy3840           9 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG------------------   69 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~------------------   69 (131)
                      ..+++|+.||.|++||+. ..+..++..|.+.|..++++.  ..+++++.|.+++.|-+...                  
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~  157 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR  157 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence            568999999999999987 677888999999999999876  67888899999988873221                  


Q ss_pred             --------------------ceeeeeecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          70 --------------------QCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        70 --------------------~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                                          .++..+.-....+.++.|+|-..  |++++.|+.|.+||++++.++..+.
T Consensus       158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi  227 (433)
T KOG0268|consen  158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI  227 (433)
T ss_pred             ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee
Confidence                                12222222345677888888533  7888899999999999998877653

>KOG1332|consensus

Probab=99.56  E-value=3.6e-14  Score=85.22  Aligned_cols=118  Identities=22%  Similarity=0.366  Sum_probs=91.7

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCC---ceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCc---ceeeeee
Q psy3840           5 RNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASG---QCEQQFS   76 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~---~~~~~~~   76 (131)
                      +.-|.+||+++.||.|.+|...+.   .......|...+.+++|.|  -|-.|++++.||.|.+.+.+..   .......
T Consensus        67 Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~  146 (299)
T KOG1332|consen   67 PKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF  146 (299)
T ss_pred             cccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence            447999999999999999997633   3345567899999999999  4567889999999999988754   2234456


Q ss_pred             cCCCCeEEEEEcCC---C------------cEEEEeCCCcEEEEeCCCCe--eeEEEecccce
Q psy3840          77 FHSAPALDVDWQSN---T------------SFASCSTDQHIHVCKLHSDK--PVKSFEGHTRV  122 (131)
Q Consensus        77 ~~~~~v~~~~~~~~---~------------~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~  122 (131)
                      .|...+++++|.|.   +            +|++|+.|..|+||+...++  .-..+.+|..-
T Consensus       147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw  209 (299)
T KOG1332|consen  147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW  209 (299)
T ss_pred             ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence            78889999999874   3            38999999999999988753  33345666543

>KOG0321|consensus

Probab=99.56  E-value=3.4e-14  Score=94.66  Aligned_cols=103  Identities=20%  Similarity=0.268  Sum_probs=89.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCCC---C----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee--eec
Q psy3840           7 NGSFLATGSYDGYARIWTSDG---S----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ--FSF   77 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~---~----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~--~~~   77 (131)
                      ..++|+.+.++|.|.++|...   .    .......|.+.|..+.|-|....|++++.|.++++||+..++++..  +.+
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence            457899999999999999761   1    1244456999999999999888999999999999999999888766  889


Q ss_pred             CCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCC
Q psy3840          78 HSAPALDVDWQSNTS--FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~  109 (131)
                      |...+.+++|.|...  |++|+.|+.+.|||++-
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence            999999999999754  89999999999999874

>KOG2919|consensus

Probab=99.55  E-value=7.9e-14  Score=86.74  Aligned_cols=118  Identities=23%  Similarity=0.330  Sum_probs=91.8

Q ss_pred             cccCC-CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-cceeeeeecC
Q psy3840           3 SSRNN-GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAAS-GQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~-~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~-~~~~~~~~~~   78 (131)
                      +|+|. ...++.|+...++=||+-. +.++..+.+|.+.|+.++|.++|+.+++|.. +-.|..||++. +.++..+..|
T Consensus       214 a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh  293 (406)
T KOG2919|consen  214 AFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH  293 (406)
T ss_pred             eccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence            45664 4588999888888888754 7788888899999999999999999999987 77899999986 4556666666


Q ss_pred             CC-CeEEEEEc--CCCc-EEEEeCCCcEEEEeCCC-CeeeEEEeccc
Q psy3840          79 SA-PALDVDWQ--SNTS-FASCSTDQHIHVCKLHS-DKPVKSFEGHT  120 (131)
Q Consensus        79 ~~-~v~~~~~~--~~~~-~~~~~~d~~i~i~d~~~-~~~~~~~~~~~  120 (131)
                      .. .-..|.|.  |.++ |++|+.||.|++||+++ +..+..+..+.
T Consensus       294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s  340 (406)
T KOG2919|consen  294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS  340 (406)
T ss_pred             ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence            55 45567664  5566 78888999999999988 55455544333

>KOG1007|consensus

Probab=99.55  E-value=6.6e-14  Score=85.95  Aligned_cols=104  Identities=19%  Similarity=0.249  Sum_probs=84.6

Q ss_pred             cccC--CCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCC-cceeeeee
Q psy3840           3 SSRN--NGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAAS-GQCEQQFS   76 (131)
Q Consensus         3 ~~~~--~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~-~~~~~~~~   76 (131)
                      .|+|  +++.+++. .|+++..||+.  .+....-..|...+..+.|+|+ ...+++++.||.+++||.++ ..++..+.
T Consensus       177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~  255 (370)
T KOG1007|consen  177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP  255 (370)
T ss_pred             ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence            3555  78888886 58899999987  2333334568889999999995 55788999999999999986 45678888


Q ss_pred             cCCCCeEEEEEcCC-Cc-EEEEeCCCcEEEEeC
Q psy3840          77 FHSAPALDVDWQSN-TS-FASCSTDQHIHVCKL  107 (131)
Q Consensus        77 ~~~~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~  107 (131)
                      +|..-++++.|+|. .+ +++++.|..|.+|..
T Consensus       256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             CCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            99999999999997 34 789999999999854

>KOG1539|consensus

Probab=99.55  E-value=3.8e-13  Score=92.00  Aligned_cols=114  Identities=15%  Similarity=0.202  Sum_probs=101.9

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD   86 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~   86 (131)
                      -+.++.|+.+|.+.+||++ ++.+.+++++...|+++.-+|--..++.|..+|+|.+++++.++.+.+++...++|++++
T Consensus       172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS  251 (910)
T KOG1539|consen  172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS  251 (910)
T ss_pred             eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence            4789999999999999998 889999999999999999999888999999999999999999999999997778999999


Q ss_pred             EcCCCc--EEEEeCCCcEEEEeCCCCeeeEEEe-cccc
Q psy3840          87 WQSNTS--FASCSTDQHIHVCKLHSDKPVKSFE-GHTR  121 (131)
Q Consensus        87 ~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~  121 (131)
                      |..||.  +++++..|.+.+||++..+.+.... .|.+
T Consensus       252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~  289 (910)
T KOG1539|consen  252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG  289 (910)
T ss_pred             eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC
Confidence            998877  7888888999999999877666554 5633

>KOG1034|consensus

Probab=99.54  E-value=3.2e-13  Score=84.13  Aligned_cols=64  Identities=17%  Similarity=0.433  Sum_probs=55.8

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeec---ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTL---GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA   67 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~---~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~   67 (131)
                      .....+++++++.|..|++||++ ..++..+   .+|.+.|.++.|++++..+++++.|.++++|++.
T Consensus       144 ~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  144 HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             CCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            34456899999999999999998 5555444   5699999999999999999999999999999998

>KOG1445|consensus

Probab=99.54  E-value=6.4e-14  Score=93.96  Aligned_cols=116  Identities=22%  Similarity=0.389  Sum_probs=95.9

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCcee-------ecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKS-------TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +..+|++|+.|..|++|.+....-.       .+.+.+-.+.++.|+|...-++..+..|.+++||+.+++....+.+|.
T Consensus        91 ~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~  170 (1012)
T KOG1445|consen   91 ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHT  170 (1012)
T ss_pred             chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCc
Confidence            5678899999999999998722211       222334478899999977667777788999999999999999999999


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC-eeeEEEecccce
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRV  122 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~  122 (131)
                      ..|.+..|+.||. +++++.|..|+|||.|.. ++++..++|.+.
T Consensus       171 d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~  215 (1012)
T KOG1445|consen  171 DKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM  215 (1012)
T ss_pred             hhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccc
Confidence            9999999999998 788899999999999864 788888888764

>KOG0321|consensus

Probab=99.53  E-value=6.2e-14  Score=93.44  Aligned_cols=108  Identities=19%  Similarity=0.286  Sum_probs=81.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceee--cccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcc--e------
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKST--LGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQ--C------   71 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~--~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~--~------   71 (131)
                      |.|-...|++++.|.++++||++ ++.+..  +.+|++.+.+++|.| +...+++|+.||.+.|||++-..  .      
T Consensus       108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~  187 (720)
T KOG0321|consen  108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDN  187 (720)
T ss_pred             cCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhh
Confidence            56666788889999999999998 444444  789999999999999 67789999999999999997432  0      


Q ss_pred             ------------ee-------eeecCC----CCeEEEEEcCCCcEEEEeC-CCcEEEEeCCCCe
Q psy3840          72 ------------EQ-------QFSFHS----APALDVDWQSNTSFASCST-DQHIHVCKLHSDK  111 (131)
Q Consensus        72 ------------~~-------~~~~~~----~~v~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~  111 (131)
                                  ..       ....+.    ..|+.+.|..+..|++++. |+.|+|||+++..
T Consensus       188 ~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  188 RIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             hhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence                        00       001111    2356677776777888877 9999999998753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=3.5e-12  Score=76.34  Aligned_cols=112  Identities=15%  Similarity=0.351  Sum_probs=79.1

Q ss_pred             cccCCCCEEEEEeC----------CCeEEEEcC--CCCceeeccc-ccccEEEEEEcCCCCEEEEE--eCCCcEEEEECC
Q psy3840           3 SSRNNGSFLATGSY----------DGYARIWTS--DGSLKSTLGQ-HKGPIFALKWNKRGNYILSA--GVDKTTIIWDAA   67 (131)
Q Consensus         3 ~~~~~~~~l~~~~~----------d~~i~~~~~--~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~--~~d~~i~~~d~~   67 (131)
                      .|+++|+.|++-..          -+...+|.+  .+.....+.- ..++|..++|+|+++.++..  ..+..+.+||++
T Consensus        12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~   91 (194)
T PF08662_consen   12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK   91 (194)
T ss_pred             EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc
Confidence            37888988876543          122444443  3444444433 34579999999999986544  457799999996


Q ss_pred             CcceeeeeecCCCCeEEEEEcCCCc-EEEEeC---CCcEEEEeCCCCeeeEEEe
Q psy3840          68 SGQCEQQFSFHSAPALDVDWQSNTS-FASCST---DQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        68 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~  117 (131)
                       ++.+..+.  ......+.|+|+|+ +++++.   .|.+.+||.++.+.+.+..
T Consensus        92 -~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~  142 (194)
T PF08662_consen   92 -GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE  142 (194)
T ss_pred             -ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc
Confidence             65555554  45778899999988 666654   3679999999888887765

>KOG4328|consensus

Probab=99.53  E-value=2.1e-13  Score=87.90  Aligned_cols=105  Identities=18%  Similarity=0.179  Sum_probs=86.1

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc--ce--eeeee
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG--QC--EQQFS   76 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~--~~--~~~~~   76 (131)
                      ++.+...++.+..-|...+||..  +.....+.-|..+|..|+++| ...++++++.|++.+|||++.-  +.  +....
T Consensus       287 ~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~  366 (498)
T KOG4328|consen  287 FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL  366 (498)
T ss_pred             ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc
Confidence            56667778888888889999976  565677778888999999999 6778999999999999999863  22  22233


Q ss_pred             cCCCCeEEEEEcCC-CcEEEEeCCCcEEEEeCC
Q psy3840          77 FHSAPALDVDWQSN-TSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        77 ~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~  108 (131)
                      .|+..|.+..|+|. +.+++.+.|..|+|||..
T Consensus       367 ~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  367 PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            57889999999998 459999999999999983

>KOG2106|consensus

Probab=99.52  E-value=9.9e-13  Score=86.01  Aligned_cols=104  Identities=16%  Similarity=0.228  Sum_probs=87.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      +.+|+.+.+++++.|+.+++|+ ..+++.+ +.-.+++.|+.|+|.+ .++.|...|...+.|.++...+..-.. ..++
T Consensus       375 a~hps~~q~~T~gqdk~v~lW~-~~k~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~l  450 (626)
T KOG2106|consen  375 ATHPSKNQLLTCGQDKHVRLWN-DHKLEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQL  450 (626)
T ss_pred             EcCCChhheeeccCcceEEEcc-CCceeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCce
Confidence            3578889999999999999999 4444333 3356788999999999 899999999999999999666555444 7899


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      +.++|+|+|. ++.|+.|+.|++|.+...
T Consensus       451 s~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  451 SVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            9999999987 899999999999998654

>KOG1009|consensus

Probab=99.52  E-value=6.5e-14  Score=88.98  Aligned_cols=108  Identities=26%  Similarity=0.478  Sum_probs=93.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC--------C-----C----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD--------G-----S----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA   66 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~--------~-----~----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~   66 (131)
                      |+|+|+++++|+++|.|.+|-..        .     +    ....+.+|...+..++|+|++..+++++.|..+++||+
T Consensus        73 f~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv  152 (434)
T KOG1009|consen   73 FSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV  152 (434)
T ss_pred             EcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence            78999999999999999999543        1     1    23456779999999999999999999999999999999


Q ss_pred             CCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          67 ASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        67 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      ..|.....+..|..-+..++|.|.++ +++-+.|+..+.+.+...+
T Consensus       153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence            99999999999999999999999877 7888888877777765443

>KOG0303|consensus

Probab=99.52  E-value=4.4e-13  Score=85.27  Aligned_cols=106  Identities=15%  Similarity=0.256  Sum_probs=85.4

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC-
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-   80 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~-   80 (131)
                      |+| ..+.|++++.|.+|.+||+. ++.+.++. |.+-|.++.|+.+|.++++.+.|..|++||.++++.+..-..|.+ 
T Consensus       139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~  217 (472)
T KOG0303|consen  139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA  217 (472)
T ss_pred             ecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence            444 56788899999999999997 66666666 999999999999999999999999999999999999887766654 


Q ss_pred             CeEEEEEcCCCcEEEEe----CCCcEEEEeCCCC
Q psy3840          81 PALDVDWQSNTSFASCS----TDQHIHVCKLHSD  110 (131)
Q Consensus        81 ~v~~~~~~~~~~~~~~~----~d~~i~i~d~~~~  110 (131)
                      .....-|-.++.+++.+    .++.+-+||....
T Consensus       218 k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  218 KPARAIFLASGKIFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             CcceeEEeccCceeeeccccccccceeccCcccc
Confidence            45566677777765554    4567899986543

>KOG1272|consensus

Probab=99.51  E-value=5.1e-14  Score=90.99  Aligned_cols=115  Identities=15%  Similarity=0.202  Sum_probs=102.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      |-|..-+|++++..|.++.-|++ |+.+..+....+.+..|..+|-...+-.|...|++.+|.....+++..+..|.++|
T Consensus       217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V  296 (545)
T KOG1272|consen  217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV  296 (545)
T ss_pred             ccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence            45666678888889999999988 88888888888899999999988888999999999999999999999999999999


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .++++.++|+ .++.+.|+.++|||+|....+.++..
T Consensus       297 ~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  297 SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             ceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            9999999998 79999999999999998877766643

>KOG1310|consensus

Probab=99.51  E-value=1.4e-13  Score=90.90  Aligned_cols=107  Identities=24%  Similarity=0.339  Sum_probs=90.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeec-ccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCC----------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTL-GQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAAS----------   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~-~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~----------   68 (131)
                      .|+.+|.+|++|++|..+.+||.. .++++.+ .+|...|.+++|-|  +.+.+++|..|..|+++|+..          
T Consensus        57 eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~  136 (758)
T KOG1310|consen   57 EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM  136 (758)
T ss_pred             eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence            589999999999999999999976 5555444 58999999999999  567899999999999999984          


Q ss_pred             cceeeeeecCCCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCC
Q psy3840          69 GQCEQQFSFHSAPALDVDWQSNT-S-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        69 ~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~  109 (131)
                      .+....+..|...|..++-.|++ . +-+++.||.++-+|+|.
T Consensus       137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            23345566788889899998885 3 88999999999999986

>KOG1274|consensus

Probab=99.51  E-value=4.8e-13  Score=92.23  Aligned_cols=115  Identities=19%  Similarity=0.250  Sum_probs=98.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      ++..+.+.+++|+.+++|..|.+. +..-..+...+-++.+++++-+|++++.|+.|-.|++-++........+.+|..+
T Consensus        61 ~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap  140 (933)
T KOG1274|consen   61 SIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP  140 (933)
T ss_pred             EEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence            455667899999999999999987 3333344556678999999999999999999999999999998888999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      |.++.|+|++. |++.+.||.|++||+.++.+..++.
T Consensus       141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen  141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            99999999988 7889999999999999876655543

>KOG1188|consensus

Probab=99.50  E-value=4.2e-13  Score=83.83  Aligned_cols=101  Identities=15%  Similarity=0.236  Sum_probs=82.0

Q ss_pred             CEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcceeee-----------
Q psy3840           9 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQ-----------   74 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~~~~~-----------   74 (131)
                      ..++++..+|.|++||.. ++.+..++++...+..++|..  .+..+.+++.||+|++||++.......           
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            568888999999999976 788889999999999999877  577899999999999999986321100           


Q ss_pred             ----------------------------------------eecCCCCeEEEEEcCCC--cEEEEeCCCcEEEEeCCC
Q psy3840          75 ----------------------------------------FSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHS  109 (131)
Q Consensus        75 ----------------------------------------~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~  109 (131)
                                                              ...|...|++++|+|..  .+++|+.||.+.+||++.
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence                                                    01356779999999973  389999999999999864

>KOG1524|consensus

Probab=99.50  E-value=7.1e-13  Score=87.42  Aligned_cols=121  Identities=20%  Similarity=0.275  Sum_probs=95.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      -|+|+|.-|++++.||.|++|.-.|-...++-....+|.|++|.|+.+.++-+.. +.+.+=.+.....+-.++.|.+-|
T Consensus       111 RW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGii  189 (737)
T KOG1524|consen  111 RWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLV  189 (737)
T ss_pred             ccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEE
Confidence            3899999999999999999999888777777778889999999997776555432 345555566666667788999999


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      .++.|++.+. +++|+.|-..++||-. |.++.+-..|.-++++
T Consensus       190 L~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITS  232 (737)
T KOG1524|consen  190 LSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITS  232 (737)
T ss_pred             EEeecCccccceeecCCceeEEeeccc-CcccccCChhccceee
Confidence            9999999866 8999999999999965 5555555555554443

>KOG4328|consensus

Probab=99.48  E-value=6.5e-13  Score=85.67  Aligned_cols=124  Identities=21%  Similarity=0.266  Sum_probs=91.3

Q ss_pred             cccCCC--CEEEEEeCCCeEEEEcCC-----CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcce--e
Q psy3840           3 SSRNNG--SFLATGSYDGYARIWTSD-----GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQC--E   72 (131)
Q Consensus         3 ~~~~~~--~~l~~~~~d~~i~~~~~~-----~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~--~   72 (131)
                      +|+|..  .++++|+..|.|=+||+.     ...+..+..|.++|.++.|+| +...+++.+.||+|++-|++.+..  +
T Consensus       193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v  272 (498)
T KOG4328|consen  193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV  272 (498)
T ss_pred             EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHH
Confidence            466644  578889899999999994     334556678999999999999 778999999999999999875310  0


Q ss_pred             -------------------------------------------eeeecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeC
Q psy3840          73 -------------------------------------------QQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKL  107 (131)
Q Consensus        73 -------------------------------------------~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~  107 (131)
                                                                 ..+.-|...|..++++|-..  +++++.|++.+|||+
T Consensus       273 ~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~  352 (498)
T KOG4328|consen  273 LSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDL  352 (498)
T ss_pred             hhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeeh
Confidence                                                       00122446799999999643  899999999999999


Q ss_pred             CCCe----eeEEEecccceEEEE
Q psy3840         108 HSDK----PVKSFEGHTRVYYLA  126 (131)
Q Consensus       108 ~~~~----~~~~~~~~~~~~~~~  126 (131)
                      |.-.    ++.....|...|.++
T Consensus       353 R~l~~K~sp~lst~~HrrsV~sA  375 (498)
T KOG4328|consen  353 RQLRGKASPFLSTLPHRRSVNSA  375 (498)
T ss_pred             hhhcCCCCcceecccccceeeee
Confidence            8642    223334566555443

>KOG1408|consensus

Probab=99.48  E-value=6.8e-13  Score=90.13  Aligned_cols=119  Identities=18%  Similarity=0.281  Sum_probs=95.0

Q ss_pred             CCEEEEEeCCCeEEEEcCC--CCceeecccccc-----------------------------------------------
Q psy3840           8 GSFLATGSYDGYARIWTSD--GSLKSTLGQHKG-----------------------------------------------   38 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~-----------------------------------------------   38 (131)
                      ..+||+++.|..|++||+.  ..++.++.+|..                                               
T Consensus       516 ~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~  595 (1080)
T KOG1408|consen  516 NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS  595 (1080)
T ss_pred             hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence            3577888889999999875  333333333333                                               


Q ss_pred             --cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC---CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCee
Q psy3840          39 --PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH---SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        39 --~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~  112 (131)
                        .+..|+..|..+++++++.|+.|++||+.+++..+.+++.   .+..-.+...|.+. +++...|.++.++|.-++++
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc  675 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC  675 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence              3456777788889999999999999999999999998863   34455677789887 89999999999999999999


Q ss_pred             eEEEecccceEEEE
Q psy3840         113 VKSFEGHTRVYYLA  126 (131)
Q Consensus       113 ~~~~~~~~~~~~~~  126 (131)
                      +..+.+|.+.++.+
T Consensus       676 vA~m~GHsE~VTG~  689 (1080)
T KOG1408|consen  676 VAQMTGHSEAVTGV  689 (1080)
T ss_pred             hhhhcCcchheeee
Confidence            99999999887654

>KOG0644|consensus

Probab=99.47  E-value=2.8e-14  Score=97.80  Aligned_cols=103  Identities=20%  Similarity=0.340  Sum_probs=95.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|...|.++++|++|..+++|... ..+...+.+|.+.++.++.+.+...+++++.|..|++|.+..+.++..+.+|.+.
T Consensus       197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga  276 (1113)
T KOG0644|consen  197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA  276 (1113)
T ss_pred             eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence            467789999999999999999976 7778889999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~  108 (131)
                      |++++|+|-.   +.+.||++++||.+
T Consensus       277 vtaiafsP~~---sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  277 VTAIAFSPRA---SSSDDGTCRIWDAR  300 (1113)
T ss_pred             eeeeccCccc---cCCCCCceEecccc
Confidence            9999999954   67889999999988

>KOG2110|consensus

Probab=99.47  E-value=8.3e-12  Score=78.80  Aligned_cols=123  Identities=18%  Similarity=0.206  Sum_probs=92.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeeccc---ccccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCcceeeeeecCCC
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQ---HKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~---~~~~i~~~~~~~~~~~~~s~~--~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      +.++|+++-.+ .|.+||++ .+.++++..   +...+..+.+++.+.+++.-+  ..|.+.+||..+-+.+..+..|.+
T Consensus        96 Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~  174 (391)
T KOG2110|consen   96 NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG  174 (391)
T ss_pred             ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC
Confidence            45677776654 49999998 566665544   333455555555666777543  368999999999999999999999


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCc-EEEEeCCCCeeeEEEecccceEEEEeeecC
Q psy3840          81 PALDVDWQSNTS-FASCSTDQH-IHVCKLHSDKPVKSFEGHTRVYYLAMDLLF  131 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~f  131 (131)
                      ++.+++|+++|. ++++++.|+ |+|+.+.+|+.+.+++--.. ...+.++.|
T Consensus       175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~~~IySL~F  226 (391)
T KOG2110|consen  175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-PVSIYSLSF  226 (391)
T ss_pred             ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-eeEEEEEEE
Confidence            999999999998 899999886 79999999999988864332 333444443

>KOG2055|consensus

Probab=99.47  E-value=4.2e-12  Score=82.17  Aligned_cols=117  Identities=18%  Similarity=0.310  Sum_probs=92.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCc---eeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCccee------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSL---KSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCE------   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~------   72 (131)
                      .|+|....+++++.|+++++|.+.|+.   +..+.-..-+|.+..|.|+|. .+++++....++.||+.+.+..      
T Consensus       220 ~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~  299 (514)
T KOG2055|consen  220 QFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY  299 (514)
T ss_pred             EecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC
Confidence            478999999999999999999988543   344444556899999999998 8889999999999999875321      


Q ss_pred             -------eee-----------e--------------------cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          73 -------QQF-----------S--------------------FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        73 -------~~~-----------~--------------------~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                             ..+           .                    ...+.+..+.|+.+++ +++++.+|.|++||++...++
T Consensus       300 g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~  379 (514)
T KOG2055|consen  300 GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCL  379 (514)
T ss_pred             CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceE
Confidence                   011           0                    0135688899998887 888888999999999999988


Q ss_pred             EEEecc
Q psy3840         114 KSFEGH  119 (131)
Q Consensus       114 ~~~~~~  119 (131)
                      ..+...
T Consensus       380 ~rf~D~  385 (514)
T KOG2055|consen  380 HRFVDD  385 (514)
T ss_pred             EEEeec
Confidence            888643

>KOG2111|consensus

Probab=99.46  E-value=2.9e-12  Score=79.50  Aligned_cols=96  Identities=22%  Similarity=0.309  Sum_probs=80.2

Q ss_pred             EeCCCeEEEEcCCCC---ceeecccccccEEEEEEcCCCCEEEEEeCCCc-EEEEECCCcceeeeeec--CCCCeEEEEE
Q psy3840          14 GSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKT-TIIWDAASGQCEQQFSF--HSAPALDVDW   87 (131)
Q Consensus        14 ~~~d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~-i~~~d~~~~~~~~~~~~--~~~~v~~~~~   87 (131)
                      |-.-|.|++-|+...   .......|...|.|++.+.+|..+++++..|+ |++||..+|+.+..++.  ....+.+++|
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF  234 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF  234 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence            344677888887632   23677889999999999999999999999998 77999999999988874  3456999999


Q ss_pred             cCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          88 QSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        88 ~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                      +|+.. ++.+++-|+++||.++.
T Consensus       235 Sp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  235 SPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCCccEEEEEcCCCeEEEEEeec
Confidence            99987 77778888999999875

>KOG1272|consensus

Probab=99.42  E-value=1.1e-12  Score=84.92  Aligned_cols=101  Identities=19%  Similarity=0.415  Sum_probs=83.6

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      -+|-+..+-+|..+|+|.+|... ..++..+..|.++|.++++.++|+++++.+.|..+++||+++-..+.++.. ..+.
T Consensus       259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a  337 (545)
T KOG1272|consen  259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPA  337 (545)
T ss_pred             cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCc
Confidence            36778899999999999999987 677778888999999999999999999999999999999999877666655 4566


Q ss_pred             EEEEEcCCCcEEEEeCCCcEEEEe
Q psy3840          83 LDVDWQSNTSFASCSTDQHIHVCK  106 (131)
Q Consensus        83 ~~~~~~~~~~~~~~~~d~~i~i~d  106 (131)
                      ..++++..+.++ .+....+.||.
T Consensus       338 ~~ls~SqkglLA-~~~G~~v~iw~  360 (545)
T KOG1272|consen  338 SNLSLSQKGLLA-LSYGDHVQIWK  360 (545)
T ss_pred             ccccccccccee-eecCCeeeeeh
Confidence            777777666444 45556788884

>KOG1538|consensus

Probab=99.42  E-value=6.1e-12  Score=85.18  Aligned_cols=113  Identities=19%  Similarity=0.351  Sum_probs=87.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-c-------ceee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-G-------QCEQ   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~-~-------~~~~   73 (131)
                      +|.|||..++.+. +..+.+||.+ |..+.++++|.+.|.+++|+.+|+.+++|+.|..+.+|+..- |       ..++
T Consensus        19 afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQ   97 (1081)
T KOG1538|consen   19 AFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQ   97 (1081)
T ss_pred             EECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeee
Confidence            5789999888875 4579999987 889999999999999999999999999999999999998652 2       1111


Q ss_pred             ee-----------------------------ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          74 QF-----------------------------SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        74 ~~-----------------------------~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .+                             ......+.+.+|..||+ ++.|-.+|+|.+-+- ++++-..++
T Consensus        98 CMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~  170 (1081)
T KOG1538|consen   98 CMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIE  170 (1081)
T ss_pred             EeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEe
Confidence            11                             01124578888999988 788999999998764 344434443

>KOG0974|consensus

Probab=99.41  E-value=4.7e-12  Score=88.32  Aligned_cols=115  Identities=21%  Similarity=0.326  Sum_probs=96.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCC-CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee-eeecCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~   81 (131)
                      ++++.-++++|+.-+.|.+|.... +....+.+|.+.+..+.++.+|+++++.+.|+++++|++.+.+... ...+|..+
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR  220 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR  220 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence            456677889999999999999762 2223688999999999999999999999999999999999987765 66679999


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      ++.+++.|+ ++++++.|.+.++|+.. +..+..+..|.
T Consensus       221 vw~~~~~~n-~i~t~gedctcrvW~~~-~~~l~~y~~h~  257 (967)
T KOG0974|consen  221 VWACCFLPN-RIITVGEDCTCRVWGVN-GTQLEVYDEHS  257 (967)
T ss_pred             eEEEEeccc-eeEEeccceEEEEEecc-cceehhhhhhh
Confidence            999999998 89999999999999654 44445555543

>KOG2919|consensus

Probab=99.41  E-value=3.1e-12  Score=79.82  Aligned_cols=117  Identities=17%  Similarity=0.243  Sum_probs=91.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CC--ceeec-----ccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCccee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GS--LKSTL-----GQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~--~~~~~-----~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~   72 (131)
                      .|+|||.+|++|- ...|++||+.  |.  .+...     .+..+-+.+++|+| +...++.++....+-|+.-..+.++
T Consensus       165 ~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl  243 (406)
T KOG2919|consen  165 QFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL  243 (406)
T ss_pred             EecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce
Confidence            5899999999985 6689999985  22  22222     23367889999999 6668999999999999988888889


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEeC-CCcEEEEeCCCC-eeeEEEeccc
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCST-DQHIHVCKLHSD-KPVKSFEGHT  120 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~~i~i~d~~~~-~~~~~~~~~~  120 (131)
                      ..+.+|.+.|+.+.|+++|. +.+|.. +.+|..||+|.. .++..+..|.
T Consensus       244 ~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv  294 (406)
T KOG2919|consen  244 QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV  294 (406)
T ss_pred             eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhc
Confidence            99999999999999999976 777654 678999999854 4555554443

>KOG2055|consensus

Probab=99.41  E-value=6e-12  Score=81.45  Aligned_cols=105  Identities=14%  Similarity=0.287  Sum_probs=86.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC-C
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-P   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~-~   81 (131)
                      .++++++|+..+..|.|++.... +..+..++ -.+.+..+.|+.+++.++..+.+|.|.+||++...++..+..... .
T Consensus       311 VShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~  389 (514)
T KOG2055|consen  311 VSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVH  389 (514)
T ss_pred             ecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccc
Confidence            47899999999999999998876 44444443 578899999999999999999999999999999988888875432 2


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                      -++++.++++. +++|+..|.|.|||.++
T Consensus       390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  390 GTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             eeeeeecCCCceEEeccCcceEEEeccch
Confidence            35667778877 89999999999999654

>KOG1063|consensus

Probab=99.40  E-value=3.3e-12  Score=86.07  Aligned_cols=106  Identities=16%  Similarity=0.220  Sum_probs=85.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC-----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--ceeee-
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--QCEQQ-   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~--~~~~~-   74 (131)
                      .||||+++|++.++|.++.+|.....     .....+.|..-|+...|+|++.++++++.|.++++|.....  +.+.. 
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~  658 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF  658 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence            58999999999999999999987521     12336789999999999999999999999999999998876  44333 


Q ss_pred             -eecCCCCeEEEEEcCC-----C-cEEEEeCCCcEEEEeCC
Q psy3840          75 -FSFHSAPALDVDWQSN-----T-SFASCSTDQHIHVCKLH  108 (131)
Q Consensus        75 -~~~~~~~v~~~~~~~~-----~-~~~~~~~d~~i~i~d~~  108 (131)
                       ...+..+|+++++.|-     + .++.|-..|.|.+|...
T Consensus       659 a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  659 ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence             2235678999999762     2 25788889999999854

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.40  E-value=7.1e-11  Score=76.65  Aligned_cols=121  Identities=30%  Similarity=0.502  Sum_probs=95.7

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC-CCceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceee-eeecC
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQ-QFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~-~~~~~   78 (131)
                      .++|++..++.++. ++.+++|+.. +..+..+.+|...+.+++|+|++. .+++++.|+.+++||...+.... .+..+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             EECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence            47888888888886 9999999987 577788888999999999999887 55555899999999988777776 56666


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCee-eEEEecccceEE
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKP-VKSFEGHTRVYY  124 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~  124 (131)
                      .... ...|+|++. +++++.|+.+++|+++.... +..+..|...+.
T Consensus       242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~  288 (466)
T COG2319         242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL  288 (466)
T ss_pred             Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence            6664 337899875 78899999999999987654 444445544443

>KOG4378|consensus

Probab=99.40  E-value=2.9e-12  Score=83.88  Aligned_cols=110  Identities=15%  Similarity=0.298  Sum_probs=93.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCc-eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC-CCCeEE
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSL-KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-SAPALD   84 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~   84 (131)
                      ...++++|+..+.|+|||++.+. .+.+++|+..|+++.++-...++++++..|.|.+..+.++.....+... ...+.-
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL  169 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence            34789999999999999998554 4567899999999999999999999999999999999998877777755 345668


Q ss_pred             EEEcCCCc--EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          85 VDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        85 ~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      +.|+|..+  |.+++.+|.|.+||+....++..+
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~  203 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA  203 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence            89999866  678899999999999877776655

>KOG0642|consensus

Probab=99.39  E-value=6.2e-12  Score=82.96  Aligned_cols=65  Identities=26%  Similarity=0.468  Sum_probs=56.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-----------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-----------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      .+++++.+++|+.||+|+.|++.           ......+.+|++.++.+++++....+++++.||++++|+...
T Consensus       352 v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  352 VPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             ecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence            56789999999999999999754           133456789999999999999888899999999999998754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.39  E-value=5.5e-11  Score=77.19  Aligned_cols=118  Identities=23%  Similarity=0.456  Sum_probs=97.7

Q ss_pred             cCCCC-EEEEEeC-CCeEEEEcCCC--CceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcceeeeeecCC
Q psy3840           5 RNNGS-FLATGSY-DGYARIWTSDG--SLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         5 ~~~~~-~l~~~~~-d~~i~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      ++++. .++..+. |+.+.+|+...  .....+..|...+..+.|+|++..+++++. ++.+++|+...++.+..+..|.
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT  198 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC
Confidence            45555 4555445 89999999884  777888899999999999999998888885 9999999999988888888888


Q ss_pred             CCeEEEEEcCCCc-EEEE-eCCCcEEEEeCCCCeeeE-EEecccce
Q psy3840          80 APALDVDWQSNTS-FASC-STDQHIHVCKLHSDKPVK-SFEGHTRV  122 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~~~~~~~-~~~~~~~~  122 (131)
                      ..+.+++|+|++. ++.+ +.|+.+++||.+.+..+. .+..|...
T Consensus       199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  244 (466)
T COG2319         199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS  244 (466)
T ss_pred             CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence            9999999999875 4444 899999999998777777 57777655

>KOG4227|consensus

Probab=99.36  E-value=2e-11  Score=78.19  Aligned_cols=109  Identities=17%  Similarity=0.265  Sum_probs=90.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-------CCceeecc-cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-------GSLKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-------~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~   74 (131)
                      .|+.++++|++|+.|..+++|++.       .+++.... .|...|.|++|......+++|+.++++...|+.+.+.+..
T Consensus        63 qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V  142 (609)
T KOG4227|consen   63 QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYV  142 (609)
T ss_pred             eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeee
Confidence            478889999999999999999976       23443332 3558999999999999999999999999999999988777


Q ss_pred             eec--CCCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCe
Q psy3840          75 FSF--HSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        75 ~~~--~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~  111 (131)
                      +..  ..+.|..+..+|- +.+++.+.++.|.+||.+..+
T Consensus       143 ~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  143 ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            654  3458999999996 558999999999999998654

>KOG0307|consensus

Probab=99.35  E-value=3.7e-12  Score=89.53  Aligned_cols=108  Identities=23%  Similarity=0.413  Sum_probs=92.1

Q ss_pred             cccCCC-CEEEEEeCCC---eEEEEcCC--CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840           3 SSRNNG-SFLATGSYDG---YARIWTSD--GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         3 ~~~~~~-~~l~~~~~d~---~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      +|+|+. ..+++++.|.   .|.+||++  ..+++++.+|...|.+|.|++ |.+++++++.|+.+.+|+.++++.+..+
T Consensus       213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~  292 (1049)
T KOG0307|consen  213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL  292 (1049)
T ss_pred             eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence            466654 5666666644   48899987  677888899999999999999 5589999999999999999999999999


Q ss_pred             ecCCCCeEEEEEcCC--CcEEEEeCCCcEEEEeCCCC
Q psy3840          76 SFHSAPALDVDWQSN--TSFASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d~~~~  110 (131)
                      .....-+..+.|+|.  +.++.++-||.|.||.+...
T Consensus       293 p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  293 PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            987788999999997  35888899999999998754

>KOG1963|consensus

Probab=99.35  E-value=2.2e-11  Score=83.67  Aligned_cols=114  Identities=22%  Similarity=0.420  Sum_probs=91.6

Q ss_pred             ccccCCCCEEEEEeCCCeEEEEcCCC-----CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           2 QSSRNNGSFLATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         2 ~~~~~~~~~l~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      .+++|+++++++|..||.|.+|.-.+     .....+.=|...|.++.|+++|.++++|+..+.+-+|.+.+++ ..-++
T Consensus       211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLP  289 (792)
T KOG1963|consen  211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLP  289 (792)
T ss_pred             EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccccc
Confidence            46799999999999999999996432     2223444588899999999999999999999999999999987 34455


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      .-..++..+.++||+. .+....|+.|.+....+.....++
T Consensus       290 RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI  330 (792)
T KOG1963|consen  290 RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI  330 (792)
T ss_pred             ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence            5678899999999977 677788999998877554444443

>KOG1523|consensus

Probab=99.34  E-value=3e-11  Score=75.21  Aligned_cols=107  Identities=20%  Similarity=0.333  Sum_probs=90.9

Q ss_pred             ccccCCCCEEEEEeCCCeEEEEcCC----CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc---ceeee
Q psy3840           2 QSSRNNGSFLATGSYDGYARIWTSD----GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG---QCEQQ   74 (131)
Q Consensus         2 ~~~~~~~~~l~~~~~d~~i~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~---~~~~~   74 (131)
                      .+|++|+..+|++.++..|.||...    -+..+++..|...++.++|+|..+.+++++.|..-++|...++   ++.-.
T Consensus        16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptlv   95 (361)
T KOG1523|consen   16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLV   95 (361)
T ss_pred             eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecccee
Confidence            3689999999999999999999865    3457888999999999999999999999999999999998543   33444


Q ss_pred             eecCCCCeEEEEEcCCC-cEEEEeCCCcEEEEeCC
Q psy3840          75 FSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLH  108 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~  108 (131)
                      +..++...+++.|+|.. ++++|+..+.|.||-.+
T Consensus        96 LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E  130 (361)
T KOG1523|consen   96 LLRINRAATCVKWSPKENKFAVGSGARLISVCYYE  130 (361)
T ss_pred             EEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence            55577889999999974 59999999999998765

>KOG2445|consensus

Probab=99.33  E-value=3.5e-11  Score=74.65  Aligned_cols=113  Identities=18%  Similarity=0.288  Sum_probs=84.1

Q ss_pred             CCEEEEEeCC-----CeEEEEcCC--C---CceeecccccccEEEEEEcCC----CCEEEEEeCCCcEEEEECCCc----
Q psy3840           8 GSFLATGSYD-----GYARIWTSD--G---SLKSTLGQHKGPIFALKWNKR----GNYILSAGVDKTTIIWDAASG----   69 (131)
Q Consensus         8 ~~~l~~~~~d-----~~i~~~~~~--~---~~~~~~~~~~~~i~~~~~~~~----~~~~~s~~~d~~i~~~d~~~~----   69 (131)
                      .++|++|+.+     +.+.||...  +   ..+.++.+|+.+|+.++|.|+    ..++++++.|| |+||.+...    
T Consensus       184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i  262 (361)
T KOG2445|consen  184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI  262 (361)
T ss_pred             CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh
Confidence            4678888765     367888654  3   234567789999999999993    34789999999 999998731    


Q ss_pred             ----------------ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC---CCeeeEEEecccc
Q psy3840          70 ----------------QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH---SDKPVKSFEGHTR  121 (131)
Q Consensus        70 ----------------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~---~~~~~~~~~~~~~  121 (131)
                                      +.+..+..|.++|+.+.|+=.|. |.+.+.||.|++|...   ..++...++....
T Consensus       263 ~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~  334 (361)
T KOG2445|consen  263 EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGS  334 (361)
T ss_pred             hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCC
Confidence                            23445667889999999988877 8888999999999643   2356665554433

>KOG4547|consensus

Probab=99.32  E-value=1.6e-10  Score=76.66  Aligned_cols=119  Identities=17%  Similarity=0.220  Sum_probs=102.1

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC-CCceeec--ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           6 NNGSFLATGSYDGYARIWTSD-GSLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~-~~~~~~~--~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      .+...++-|...|.|-+|++. ++....+  ..|.+++.++.++.+-..+.+++.|..+..|+..+...++.+......+
T Consensus        68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~  147 (541)
T KOG4547|consen   68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV  147 (541)
T ss_pred             CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence            345677888889999999987 5554444  4689999999998888899999999999999999999999999888889


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .+++.+||+. +++++  ++|.+||+++++.+.++.+|.+++..+
T Consensus       148 ~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~  190 (541)
T KOG4547|consen  148 SSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTL  190 (541)
T ss_pred             ceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEE
Confidence            9999999977 55554  689999999999999999999988654

>KOG1188|consensus

Probab=99.32  E-value=2.7e-11  Score=75.92  Aligned_cols=80  Identities=15%  Similarity=0.252  Sum_probs=64.6

Q ss_pred             cccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcc----eeeeeecCCCCeEEEEEcCCC--cEEEEeCCCcEEEEeC
Q psy3840          35 QHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKL  107 (131)
Q Consensus        35 ~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~  107 (131)
                      .|.+.|++++|+| +.+++++|+.||-+.+||+....    .+..+ .+...|..+.|..++  ++.+-++.....+|++
T Consensus       163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence            4788999999999 78899999999999999987542    22223 245679999999886  5888899999999999


Q ss_pred             CCCeeeEE
Q psy3840         108 HSDKPVKS  115 (131)
Q Consensus       108 ~~~~~~~~  115 (131)
                      +.+.+...
T Consensus       242 e~~~~~~~  249 (376)
T KOG1188|consen  242 EDGSEETW  249 (376)
T ss_pred             cCCChhhc
Confidence            88765443

>KOG2695|consensus

Probab=99.32  E-value=1.4e-11  Score=77.47  Aligned_cols=117  Identities=12%  Similarity=0.132  Sum_probs=89.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC----CC-ceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcce---eee
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD----GS-LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQC---EQQ   74 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~----~~-~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~---~~~   74 (131)
                      |.-.++++..|+.+|.|..+|+.    |. -.....-|+..|+++.... +++.+.+.+.+|+|++||++--++   +..
T Consensus       260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q  339 (425)
T KOG2695|consen  260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ  339 (425)
T ss_pred             hcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee
Confidence            55668999999999999999986    11 1223334888999998776 888899999999999999997666   777


Q ss_pred             eecCCCCeE--EEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          75 FSFHSAPAL--DVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        75 ~~~~~~~v~--~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      +.+|...-.  -+...++ +.++++++|...+||.++.++.+.++....
T Consensus       340 YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  340 YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             eecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            777654322  2233444 558889999999999999999988875443

>KOG1524|consensus

Probab=99.30  E-value=4.3e-11  Score=79.23  Aligned_cols=116  Identities=20%  Similarity=0.335  Sum_probs=93.6

Q ss_pred             CCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEE
Q psy3840           8 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW   87 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~   87 (131)
                      ...++.+++||.+.+.+-.++.......|.+.+.+-.|+|+|.-+++++.||.|++|. ++|....++.....+|.|++|
T Consensus        75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            4678888999999999988888888999999999999999999999999999999998 677666666667789999999


Q ss_pred             cCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          88 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        88 ~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      .|+.. ++- +..+.+.|=-+.....+..++.|.+.+-+
T Consensus       154 ~p~S~~vl~-c~g~h~~IKpL~~n~k~i~WkAHDGiiL~  191 (737)
T KOG1524|consen  154 APNSNSIVF-CQGGHISIKPLAANSKIIRWRAHDGLVLS  191 (737)
T ss_pred             CCCCCceEE-ecCCeEEEeecccccceeEEeccCcEEEE
Confidence            99865 333 23345666566666677777888776643

>KOG0290|consensus

Probab=99.29  E-value=1.2e-10  Score=71.90  Aligned_cols=102  Identities=26%  Similarity=0.492  Sum_probs=78.9

Q ss_pred             CEEEEEeCCCeEEEEcCCC--Cce--------eecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcce---eee
Q psy3840           9 SFLATGSYDGYARIWTSDG--SLK--------STLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQC---EQQ   74 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~--~~~--------~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~---~~~   74 (131)
                      ++||+.+  ..+|+|.+..  ..+        .+-..+..++++..|+. +.+++.+.+-|-+..+||++++..   ...
T Consensus       114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            4566653  4699998751  111        11123567999999998 888999999999999999998633   445


Q ss_pred             eecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCee
Q psy3840          75 FSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~  112 (131)
                      +..|..+|..++|..++.  +++.+.||.+++||+|..+.
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            667889999999998754  89999999999999997644

>KOG2106|consensus

Probab=99.28  E-value=6.2e-10  Score=73.32  Aligned_cols=112  Identities=17%  Similarity=0.282  Sum_probs=87.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-ceeeee-ecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQF-SFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-~~~~~~-~~~~~   80 (131)
                      .|+|.| .++.|...|...+.|.+...+..+...+.++.+++|+|+|..++.|+.|+.|++|.+..+ ...... ..+..
T Consensus       414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs  492 (626)
T KOG2106|consen  414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS  492 (626)
T ss_pred             eccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc
Confidence            488988 999999999999999886555555555889999999999999999999999999998754 333222 23347


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEE
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~  115 (131)
                      +++.+.|++|++ +.+-+.|-.|..|.....+.+..
T Consensus       493 ~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts  528 (626)
T KOG2106|consen  493 PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS  528 (626)
T ss_pred             eeEEeeecCCCceEEeccCceEEEEEccccCcccce
Confidence            899999999988 67777788899995444444433

>KOG1517|consensus

Probab=99.27  E-value=1.1e-10  Score=82.51  Aligned_cols=111  Identities=21%  Similarity=0.288  Sum_probs=83.7

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC----CCceeeccccccc--EEEEEEcCCCC-EEEEEeCCCcEEEEECCCccee--eee
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD----GSLKSTLGQHKGP--IFALKWNKRGN-YILSAGVDKTTIIWDAASGQCE--QQF   75 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~----~~~~~~~~~~~~~--i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~--~~~   75 (131)
                      ...|+.+++|..||.|++||..    ...+...+.|+..  |..+.+.++|- .+++|+.+|.|++||++.....  ..+
T Consensus      1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred             ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee
Confidence            4458999999999999999976    3456677788877  99999998665 4999999999999999974222  122


Q ss_pred             ecC---CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          76 SFH---SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        76 ~~~---~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..+   .+..+++..++... +++|+. +.|.||++. |+.+..+.
T Consensus      1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k 1341 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIK 1341 (1387)
T ss_pred             eeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccc
Confidence            222   22488999998866 666666 999999986 55555444

>KOG1240|consensus

Probab=99.27  E-value=4.3e-10  Score=80.41  Aligned_cols=114  Identities=13%  Similarity=0.182  Sum_probs=86.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC---CC-----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC--cce--
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD---GS-----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS--GQC--   71 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~---~~-----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~--~~~--   71 (131)
                      .++++.++++|+.||+|++|+..   ++     ...++..-...+.++...+.+..++.++.||.|.+.++..  .+.  
T Consensus      1057 s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred             cCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccce
Confidence            45667999999999999999976   22     1223333456889999999999999999999999988764  110  


Q ss_pred             ---------------ee---------e---------------------------eecCCCCeEEEEEcCCCc-EEEEeCC
Q psy3840          72 ---------------EQ---------Q---------------------------FSFHSAPALDVDWQSNTS-FASCSTD   99 (131)
Q Consensus        72 ---------------~~---------~---------------------------~~~~~~~v~~~~~~~~~~-~~~~~~d   99 (131)
                                     +.         .                           .....+.|++++.+|.+. +++|+..
T Consensus      1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred             eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC
Confidence                           00         0                           011246789999999877 8899999


Q ss_pred             CcEEEEeCCCCeeeEEEe
Q psy3840         100 QHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus       100 ~~i~i~d~~~~~~~~~~~  117 (131)
                      |.+.+||+|-+.++.++.
T Consensus      1217 G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1217 GQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             ceEEEEEeecCceeeccc
Confidence            999999999988888775

>KOG0650|consensus

Probab=99.26  E-value=3.3e-11  Score=80.50  Aligned_cols=103  Identities=24%  Similarity=0.310  Sum_probs=86.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC------Ccc---e
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA------SGQ---C   71 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~------~~~---~   71 (131)
                      +.+|.|..|+.|+.|+.+..||+.  .++..++.-|...+++++|++.-.++++++.||++.++.-.      .+.   +
T Consensus       614 sihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP  693 (733)
T KOG0650|consen  614 SIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP  693 (733)
T ss_pred             eecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence            468899999999999999999987  67889999999999999999999999999999999988432      222   3


Q ss_pred             eeeeecCCC----CeEEEEEcCCCc-EEEEeCCCcEEEE
Q psy3840          72 EQQFSFHSA----PALDVDWQSNTS-FASCSTDQHIHVC  105 (131)
Q Consensus        72 ~~~~~~~~~----~v~~~~~~~~~~-~~~~~~d~~i~i~  105 (131)
                      +..+++|..    .|....|+|..- +++++.|++|++|
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            455666654    488889999865 8999999999998

>KOG0280|consensus

Probab=99.26  E-value=2e-10  Score=70.99  Aligned_cols=111  Identities=16%  Similarity=0.172  Sum_probs=87.1

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-C--CceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECC-Ccceeee-eec
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-G--SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAA-SGQCEQQ-FSF   77 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~--~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~-~~~~~~~-~~~   77 (131)
                      |++.+..++++..+|.+.+-+.. .  +.+...+.|+-.++...|+. +.+.+.+|+.|+.+..||++ .++.+.. .+.
T Consensus       129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv  208 (339)
T KOG0280|consen  129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV  208 (339)
T ss_pred             eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence            56778889999999999854433 2  23346788999999999987 67899999999999999999 3444443 456


Q ss_pred             CCCCeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCC-CeeeE
Q psy3840          78 HSAPALDVDWQSN-TS-FASCSTDQHIHVCKLHS-DKPVK  114 (131)
Q Consensus        78 ~~~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~-~~~~~  114 (131)
                      |...|.+|.-+|. .. +++|+.|..|++||+|+ ++++.
T Consensus       209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~  248 (339)
T KOG0280|consen  209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF  248 (339)
T ss_pred             eecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence            7888999998876 44 89999999999999994 45543

>KOG0644|consensus

Probab=99.24  E-value=2.5e-12  Score=88.52  Aligned_cols=97  Identities=26%  Similarity=0.457  Sum_probs=89.6

Q ss_pred             eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        30 ~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                      +..+.+|-..|.|+.|+..|.++++|+.|..+++|...+..++....+|.+.++.++.+.++. +++++.|..|++|.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            456678999999999999999999999999999999999999999999999999999988766 7899999999999999


Q ss_pred             CCeeeEEEecccceEEEE
Q psy3840         109 SDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~  126 (131)
                      .+.++..+.+|.+.++.+
T Consensus       263 ~~~pvsvLrghtgavtai  280 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAI  280 (1113)
T ss_pred             CCchHHHHhccccceeee
Confidence            999999999999887654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.24  E-value=3.6e-11  Score=53.48  Aligned_cols=38  Identities=29%  Similarity=0.606  Sum_probs=35.7

Q ss_pred             CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3840          28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD   65 (131)
Q Consensus        28 ~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d   65 (131)
                      +++..+.+|.+.|.+++|+|++..+++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46778899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=4.8e-10  Score=74.73  Aligned_cols=105  Identities=15%  Similarity=0.179  Sum_probs=70.7

Q ss_pred             cccCCCCEEEEEeCC---CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEE--EECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYD---GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTII--WDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~--~d~~~~~~~~~~~   76 (131)
                      .|+|+|+.|+..+.+   ..|.+||+.+.....+....+.....+|+|+|+.++.+. .+|.+.+  ||+.+++. ..+.
T Consensus       210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt  288 (429)
T PRK01742        210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT  288 (429)
T ss_pred             eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec
Confidence            589999999887653   369999987433222222233345689999999888764 5776555  46655543 4455


Q ss_pred             cCCCCeEEEEEcCCCc-EEE-EeCCCcEEEEeCC
Q psy3840          77 FHSAPALDVDWQSNTS-FAS-CSTDQHIHVCKLH  108 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~  108 (131)
                      .+...+....|+|+++ ++. +..++...+|++.
T Consensus       289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~  322 (429)
T PRK01742        289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS  322 (429)
T ss_pred             cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence            5556678899999987 544 4456777777764

>KOG3914|consensus

Probab=99.23  E-value=1e-10  Score=74.53  Aligned_cols=98  Identities=14%  Similarity=0.167  Sum_probs=77.8

Q ss_pred             EEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-cCCCCeEEEEEcCCCcEEEEeC
Q psy3840          20 ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDWQSNTSFASCST   98 (131)
Q Consensus        20 i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~   98 (131)
                      +.+|+.........-+|-.-+..++++||++.+++++.|..|++-.....-.+..+. +|+.-|..++..++..|++++.
T Consensus       134 ~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sG  213 (390)
T KOG3914|consen  134 FDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSG  213 (390)
T ss_pred             eeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCC
Confidence            333443323334456799999999999999999999999999987776655555554 5888899999988877999999


Q ss_pred             CCcEEEEeCCCCeeeEEEe
Q psy3840          99 DQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        99 d~~i~i~d~~~~~~~~~~~  117 (131)
                      |+++++||+++|+++.++.
T Consensus       214 D~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCcEEEEecccCCcccccc
Confidence            9999999999999886654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=2e-09  Score=71.92  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=76.9

Q ss_pred             cccCCCCEEEEEeC---CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCc--EEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSY---DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKT--TIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~--i~~~d~~~~~~~~~~~   76 (131)
                      .|+|||+.|+..+.   +..|.+||+.+.....+..+.+.+...+|+|+|+.++ +.+.++.  |++||+.+++. ..+.
T Consensus       208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt  286 (435)
T PRK05137        208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLT  286 (435)
T ss_pred             EECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEcc
Confidence            58999999988764   3579999998555555556667778889999998765 5555554  77778887765 3444


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEe-CCC--cEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCS-TDQ--HIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~-~d~--~i~i~d~~~~~~  112 (131)
                      .+........|+|+++ ++..+ .++  .|+++|+.+++.
T Consensus       287 ~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        287 DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            4444566789999987 55444 333  688888876543

>KOG0771|consensus

Probab=99.22  E-value=8.6e-11  Score=75.18  Aligned_cols=76  Identities=20%  Similarity=0.277  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          41 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        41 ~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..++|+.+|..+++++.||.+|+|+..+...+.....|+..|.+++|+||++ +++-+.| ..+||+.+++.+++...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            6789999999999999999999999877777777778889999999999998 7777888 89999999986655543

>KOG2139|consensus

Probab=99.22  E-value=1.3e-09  Score=69.25  Aligned_cols=103  Identities=21%  Similarity=0.429  Sum_probs=74.6

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      .|++||..+++++. |..|.+||.. +..+.......+.+.-+.|+|++.+++.+.-|+..++|+..............+
T Consensus       202 qwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg  281 (445)
T KOG2139|consen  202 QWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG  281 (445)
T ss_pred             EEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC
Confidence            47899999999887 6679999988 333333334556789999999999999999999999997655433333333455


Q ss_pred             CeEEEEEcCCCc--EEEEeCCCcEEEEeC
Q psy3840          81 PALDVDWQSNTS--FASCSTDQHIHVCKL  107 (131)
Q Consensus        81 ~v~~~~~~~~~~--~~~~~~d~~i~i~d~  107 (131)
                      .|..-.|+|+|+  +++++.  .-.+|.+
T Consensus       282 rvqtacWspcGsfLLf~~sg--sp~lysl  308 (445)
T KOG2139|consen  282 RVQTACWSPCGSFLLFACSG--SPRLYSL  308 (445)
T ss_pred             ceeeeeecCCCCEEEEEEcC--CceEEEE
Confidence            899999999987  344433  3344443

>KOG1310|consensus

Probab=99.21  E-value=4.8e-11  Score=79.23  Aligned_cols=80  Identities=26%  Similarity=0.410  Sum_probs=70.3

Q ss_pred             eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-cCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEE
Q psy3840          30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDWQSN--TS-FASCSTDQHIHVC  105 (131)
Q Consensus        30 ~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~  105 (131)
                      ...+.+|++.|.++.|+.+|.++++|+.|-.+.+||.-..+.+..+. +|...|.+++|-|.  .+ +++|..|..|++|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            45678999999999999999999999999999999998877776664 68888999999985  33 7899999999999


Q ss_pred             eCCC
Q psy3840         106 KLHS  109 (131)
Q Consensus       106 d~~~  109 (131)
                      |+..
T Consensus       123 dl~~  126 (758)
T KOG1310|consen  123 DLDS  126 (758)
T ss_pred             eccc
Confidence            9974

>KOG1523|consensus

Probab=99.20  E-value=1.9e-10  Score=71.72  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=84.1

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcC-CC---CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee---e-ee
Q psy3840           4 SRNNGSFLATGSYDGYARIWTS-DG---SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE---Q-QF   75 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~---~-~~   75 (131)
                      |+|..++|++++.|..-++|.. ++   ++...+..++...+++.|+|.++.+++|+....|.+|-++....-   + .-
T Consensus        63 Wap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik  142 (361)
T KOG1523|consen   63 WAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK  142 (361)
T ss_pred             ecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC
Confidence            7888999999999999999997 42   455566778899999999999999999999999998877653321   1 11


Q ss_pred             ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEe
Q psy3840          76 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCK  106 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d  106 (131)
                      +..+..|.+++|+|++. +++|+.|+..++|.
T Consensus       143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen  143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             CccccceeeeeccCCcceecccccCcceeEEE
Confidence            23467899999999987 78899999999985

>KOG0322|consensus

Probab=99.19  E-value=3.5e-11  Score=73.31  Aligned_cols=63  Identities=21%  Similarity=0.337  Sum_probs=59.1

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA   66 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~   66 (131)
                      +.||++.+|+++.|+.||+|+-+ ..++..++-|.+.|.+++|+|+...++.++.|.+|.+|++
T Consensus       259 IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  259 IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            46899999999999999999976 7888889999999999999999999999999999999986

>KOG0974|consensus

Probab=99.17  E-value=2.3e-10  Score=80.22  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=85.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCce-eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-C
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLK-STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-A   80 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-~   80 (131)
                      ++.||.++++.+.|.++++|++. .+.. ....+|+..++.+.|.|+  .+++++.|.+.++|+.. ++.+..+..|. .
T Consensus       183 ~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~  259 (967)
T KOG0974|consen  183 TSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGK  259 (967)
T ss_pred             EccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhc
Confidence            56799999999999999999987 3333 366789999999999998  99999999999999754 44445666654 4


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                      .++.++..++.. .++++.|+.+++||+..
T Consensus       260 ~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  260 GIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            689999988765 79999999999999864

>KOG2111|consensus

Probab=99.17  E-value=2.6e-09  Score=66.69  Aligned_cols=65  Identities=20%  Similarity=0.401  Sum_probs=56.1

Q ss_pred             ccCCCCEEEEEeCCCe-EEEEcCC-CCceeeccc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840           4 SRNNGSFLATGSYDGY-ARIWTSD-GSLKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~-i~~~~~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      .+.+|.++|+++..|+ ||+||.. |..+.+++.  ....|.+++|+|+..++++++..|++++|.++.
T Consensus       189 Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  189 LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            5678999999999997 8899987 777777654  335799999999999999999999999998875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.17  E-value=5.3e-09  Score=68.41  Aligned_cols=109  Identities=15%  Similarity=0.206  Sum_probs=78.2

Q ss_pred             CEEE-EEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840           9 SFLA-TGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD   86 (131)
Q Consensus         9 ~~l~-~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~   86 (131)
                      ++++ +-..++.|.+.|.. .+.+.++......-..+.++|+++++++.+.|+.+.++|+.+.+.+..+... .....++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEE
Confidence            4454 45568999999987 5566666654444455779999999999999999999999999999888764 4567899


Q ss_pred             EcCCCc-EE-EEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          87 WQSNTS-FA-SCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        87 ~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ++++|+ ++ +.-..+.+.++|.++.+.+..+..
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            999988 44 445688999999999998887753

...

>KOG2139|consensus

Probab=99.16  E-value=2.7e-09  Score=67.90  Aligned_cols=103  Identities=20%  Similarity=0.384  Sum_probs=76.9

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCC-----CCc----------eeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSD-----GSL----------KSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDA   66 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~-----~~~----------~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~   66 (131)
                      |-| .+..|++|+..| |.+|...     +..          +....+| .+|++|+|.+||..+++++- +..|.+||.
T Consensus       148 wRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdp  225 (445)
T KOG2139|consen  148 WRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDP  225 (445)
T ss_pred             eccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcC
Confidence            444 345778887655 8999765     111          1122334 68999999999999999886 678999999


Q ss_pred             CCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          67 ASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        67 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                      .++..+-......+.+.-+.|+||+. ++++.-|+..++|+..
T Consensus       226 dtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  226 DTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             CCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            99877655544456788899999987 8888999999999543

>KOG2321|consensus

Probab=99.15  E-value=1.6e-09  Score=72.37  Aligned_cols=111  Identities=12%  Similarity=0.200  Sum_probs=86.8

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec------
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF------   77 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~------   77 (131)
                      .++..++++|+.. .|.=+|+. |..+..+....+.+.++..++...++++|+.+|.+..||.+....+..+..      
T Consensus       143 ~~scDly~~gsg~-evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s  221 (703)
T KOG2321|consen  143 KPSCDLYLVGSGS-EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS  221 (703)
T ss_pred             CCCccEEEeecCc-ceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCC
Confidence            3445566665543 45556766 777777777778999999999999999999999999999998766555432      


Q ss_pred             C-----CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          78 H-----SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        78 ~-----~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      +     ...|+++.|..+|. ++.|+.+|.+.|||+++.+++..-
T Consensus       222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k  266 (703)
T KOG2321|consen  222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK  266 (703)
T ss_pred             CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec
Confidence            1     12499999999887 999999999999999988776553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=8.3e-09  Score=68.87  Aligned_cols=109  Identities=17%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             cccCCCCEEEEEeC---CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEE-eCCC--cEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSY---DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDK--TTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~-~~d~--~i~~~d~~~~~~~~~~~   76 (131)
                      .|+|||+.|+..+.   +..+.+|++.+.....+....+......|+|+|+.++.. +.++  .|++||+.+++... +.
T Consensus       205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt  283 (429)
T PRK03629        205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT  283 (429)
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc
Confidence            58999999987543   346888998744444433334445578999999987754 4444  58889998876543 33


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeC-CC--cEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCST-DQ--HIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~  112 (131)
                      .....+....|+|+++ ++..+. ++  .|+.+|+.+++.
T Consensus       284 ~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        284 DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            3344677899999987 655443 33  455557766543

>KOG2321|consensus

Probab=99.14  E-value=7.2e-10  Score=73.99  Aligned_cols=116  Identities=20%  Similarity=0.319  Sum_probs=86.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCC-Ccee------ecccccc-----cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDG-SLKS------TLGQHKG-----PIFALKWNKRGNYILSAGVDKTTIIWDAASGQC   71 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~-~~~~------~~~~~~~-----~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~   71 (131)
                      .++-..+|++|+.+|.|..||... ..+.      .+..|.+     .|+++.|+.+|-.+++|...|.+.+||++..++
T Consensus       183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p  262 (703)
T KOG2321|consen  183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP  262 (703)
T ss_pred             ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence            456678999999999999999762 1111      2223333     389999999999999999999999999998877


Q ss_pred             eeeee-cCCCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          72 EQQFS-FHSAPALDVDWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        72 ~~~~~-~~~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      +..-. ....++..+.|.+.+ + -+.......++|||-.+|++...+..-
T Consensus       263 l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt  313 (703)
T KOG2321|consen  263 LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT  313 (703)
T ss_pred             eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc
Confidence            64433 334678899997752 2 344445568999999999988877643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1e-08  Score=68.58  Aligned_cols=108  Identities=14%  Similarity=0.129  Sum_probs=73.9

Q ss_pred             cccCCCCEEEEEeCC---CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCC--cEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYD---GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDK--TTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~--~i~~~d~~~~~~~~~~~   76 (131)
                      .|+||++.|+..+..   ..|.+||+.+.....+....+.....+|+|+|+.++ +.+.++  .|++||+.+++.. .+.
T Consensus       210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt  288 (433)
T PRK04922        210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT  288 (433)
T ss_pred             cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc
Confidence            589999999887643   368999987544444444455566789999998765 445555  5999999887643 344


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEe-CCCc--EEEEeCCCCe
Q psy3840          77 FHSAPALDVDWQSNTS-FASCS-TDQH--IHVCKLHSDK  111 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~-~d~~--i~i~d~~~~~  111 (131)
                      .+........|+|+++ ++..+ .++.  |+++|+.+++
T Consensus       289 ~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        289 NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            4444456789999987 55444 3443  7777776654

>KOG1517|consensus

Probab=99.13  E-value=2.2e-09  Score=76.21  Aligned_cols=107  Identities=17%  Similarity=0.178  Sum_probs=77.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCc-eeec-ccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcc---eeeeeec
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSL-KSTL-GQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQ---CEQQFSF   77 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~---~~~~~~~   77 (131)
                      |......|++++.-..|++||...+. +..+ .+....++++.-+. .|+.++.|-.||.+++||.+...   .+...+.
T Consensus      1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred             hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence            44444555555567789999987333 2222 23444667765443 67999999999999999988643   3556666


Q ss_pred             CCCC--eEEEEEcCCC--cEEEEeCCCcEEEEeCCCC
Q psy3840          78 HSAP--ALDVDWQSNT--SFASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        78 ~~~~--v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~  110 (131)
                      |...  |..+.+.++|  .+++|+.+|.|++||+|..
T Consensus      1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             cCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            7665  8888898864  4999999999999999973

>KOG0650|consensus

Probab=99.12  E-value=1e-09  Score=73.64  Aligned_cols=82  Identities=17%  Similarity=0.367  Sum_probs=66.3

Q ss_pred             CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc--EEEEeCCCcEEEE
Q psy3840          28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVC  105 (131)
Q Consensus        28 ~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~  105 (131)
                      .+...+.+|++.+.++..+|.|.++++|+.||++++|.+.++.++..+... ..|.+++|+|.+.  +++...+..+.|.
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEe
Confidence            344567899999999999999999999999999999999999999988754 6899999999754  4444444446666


Q ss_pred             eCCCC
Q psy3840         106 KLHSD  110 (131)
Q Consensus       106 d~~~~  110 (131)
                      +..-|
T Consensus       470 np~~G  474 (733)
T KOG0650|consen  470 NPIFG  474 (733)
T ss_pred             Ccccc
Confidence            65444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=3.5e-09  Score=70.67  Aligned_cols=107  Identities=18%  Similarity=0.209  Sum_probs=72.3

Q ss_pred             cccCCCCEEEEEe-CCCeEEEE--cCCCCceeecccccccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCc-ceeeeeec
Q psy3840           3 SSRNNGSFLATGS-YDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASG-QCEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~-~d~~i~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~~~-~~~~~~~~   77 (131)
                      .|+|||+.|+.+. .+|.+.+|  |+.+.....+..+...+....|+|+++.++.. ..++...+|++... .....+ .
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~  332 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G  332 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence            5899999988765 57766655  66655566666666778889999999976654 45788888876432 222222 2


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      +..  ....|+|+++ ++..+.+ .+.+||+.+++..
T Consensus       333 ~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~  366 (429)
T PRK01742        333 GRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTE  366 (429)
T ss_pred             CCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeE
Confidence            222  4577999987 6555554 4667999887543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.11  E-value=1.2e-08  Score=67.16  Aligned_cols=113  Identities=19%  Similarity=0.218  Sum_probs=92.9

Q ss_pred             cCCCCEEEEEeCCC-eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           5 RNNGSFLATGSYDG-YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         5 ~~~~~~l~~~~~d~-~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      ..+++-++.|..|| .+-+||..+..+......-+.|.++..+|+|+.++.+.....+.+.|+.++.....-+...+-++
T Consensus       368 ~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lIt  447 (668)
T COG4946         368 QVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLIT  447 (668)
T ss_pred             ccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeE
Confidence            34567888899999 79999999888888888888999999999999999999999999999999987655555667899


Q ss_pred             EEEEcCCCc-EEEEeCC----CcEEEEeCCCCeeeEEEe
Q psy3840          84 DVDWQSNTS-FASCSTD----QHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        84 ~~~~~~~~~-~~~~~~d----~~i~i~d~~~~~~~~~~~  117 (131)
                      .+.|+|+++ ++-+-.+    ..|+++|+..++....-.
T Consensus       448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT  486 (668)
T COG4946         448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT  486 (668)
T ss_pred             EEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence            999999998 5555444    468999999877665543

>KOG1587|consensus

Probab=99.11  E-value=9.5e-10  Score=74.62  Aligned_cols=106  Identities=20%  Similarity=0.224  Sum_probs=79.7

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc--ceeeeeecC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG--QCEQQFSFH   78 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~--~~~~~~~~~   78 (131)
                      ++|=+..++..+.|-++++|...  ..++..+..+...+.+++||| ....++++..+|.+.+||+...  .++.+....
T Consensus       406 ~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~  485 (555)
T KOG1587|consen  406 RNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC  485 (555)
T ss_pred             cCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc
Confidence            34444444333348899999865  566677777888899999999 6678888999999999999753  344444444


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                      ......+.|+++++ ++.|+..|.+++|++..
T Consensus       486 ~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  486 SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            55667788888887 88899999999999863

>KOG0280|consensus

Probab=99.10  E-value=1.5e-09  Score=67.23  Aligned_cols=102  Identities=13%  Similarity=0.222  Sum_probs=76.7

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC--CCceee-cccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-cceeeeeecCCC
Q psy3840           6 NNGSFLATGSYDGYARIWTSD--GSLKST-LGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSA   80 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~--~~~~~~-~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~-~~~~~~~~~~~~   80 (131)
                      .+.+.+.+|++|+.+..||+.  ++.+.. .+.|...|.++.-+| .+.++++|+.|..|++||.++ ++++..-. -.+
T Consensus       176 ~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~G  254 (339)
T KOG0280|consen  176 KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGG  254 (339)
T ss_pred             CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-ccc
Confidence            356899999999999999987  444443 567888999998887 788999999999999999995 55554433 347


Q ss_pred             CeEEEEEcCCC--c-EEEEeCCCcEEEEeCCC
Q psy3840          81 PALDVDWQSNT--S-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        81 ~v~~~~~~~~~--~-~~~~~~d~~i~i~d~~~  109 (131)
                      .|+.+.++|..  + ++++..+| .+|.+...
T Consensus       255 GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~  285 (339)
T KOG0280|consen  255 GVWRIKHHPEIFHRLLAACMHNG-AKILDSSD  285 (339)
T ss_pred             ceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence            89999999963  3 45554444 45555543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=1.5e-08  Score=67.67  Aligned_cols=107  Identities=13%  Similarity=0.147  Sum_probs=69.6

Q ss_pred             cccCCCCEEEEEeCC---CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEE--CCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYD---GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWD--AASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d--~~~~~~~~~~~   76 (131)
                      .|+|||+.|+..+.+   ..|.+||+.+.....+....+.+....|+|+|+.++ +.+.++...+|.  +..+. ...+.
T Consensus       202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt  280 (427)
T PRK02889        202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT  280 (427)
T ss_pred             eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC
Confidence            589999999887643   358999987544444444445667889999998876 566777766654  44443 34444


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEe-CCCcEEEE--eCCCC
Q psy3840          77 FHSAPALDVDWQSNTS-FASCS-TDQHIHVC--KLHSD  110 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~--d~~~~  110 (131)
                      .+........|+|+++ ++..+ .++...+|  ++.++
T Consensus       281 ~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g  318 (427)
T PRK02889        281 QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG  318 (427)
T ss_pred             CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence            4444556788999987 55443 34555555  44444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.5e-08  Score=67.62  Aligned_cols=114  Identities=21%  Similarity=0.269  Sum_probs=74.8

Q ss_pred             cccCCCCEEEEEe-CCCeEEEE--cCC--CCceeecccccccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCcceeee
Q psy3840           3 SSRNNGSFLATGS-YDGYARIW--TSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~-~d~~i~~~--~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d---~~i~~~d~~~~~~~~~   74 (131)
                      .|+|||+.|+..+ .+|...+|  ++.  +.....+..+...+....|+|+|+.++....+   ..+.+||+.+++... 
T Consensus       287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-  365 (428)
T PRK01029        287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-  365 (428)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-
Confidence            5899999887765 46655555  443  33344444444566788999999988766543   468899998886543 


Q ss_pred             eecCCCCeEEEEEcCCCc-EE-EEeC--CCcEEEEeCCCCeeeEEEe
Q psy3840          75 FSFHSAPALDVDWQSNTS-FA-SCST--DQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~-~~-~~~~--d~~i~i~d~~~~~~~~~~~  117 (131)
                      +......+....|+|+++ ++ +...  ...++++|+..++......
T Consensus       366 Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        366 LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI  412 (428)
T ss_pred             ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            332234567789999987 44 3332  3468899998776544443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=2.2e-08  Score=66.98  Aligned_cols=110  Identities=19%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             cccCCCCEEEE-EeCCC--eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CCc--EEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLAT-GSYDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKT--TIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~-~~~d~--~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~--i~~~d~~~~~~~~~~~   76 (131)
                      .|+|+|+.++. .+.++  .|.+||+.+.....+..+........|+|+++.++..+. ++.  ++++|+.+++.. .+.
T Consensus       254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt  332 (433)
T PRK04922        254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLT  332 (433)
T ss_pred             eECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eee
Confidence            58999998764 44555  588899886656666666555677899999998876653 444  666777666532 232


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeC-CC--cEEEEeCCCCeee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCST-DQ--HIHVCKLHSDKPV  113 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~~  113 (131)
                      ..........|+|+++ ++..+. ++  .|.+||+.+++..
T Consensus       333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            2233445689999987 544332 22  5999999877543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.07  E-value=1e-09  Score=48.68  Aligned_cols=38  Identities=32%  Similarity=0.579  Sum_probs=34.4

Q ss_pred             cceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEe
Q psy3840          69 GQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCK  106 (131)
Q Consensus        69 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d  106 (131)
                      ++++..+.+|...|.+++|+|++. +++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356788999999999999999966 99999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.06  E-value=3.8e-08  Score=65.36  Aligned_cols=109  Identities=13%  Similarity=0.117  Sum_probs=73.6

Q ss_pred             cccCCCCEEEEEeCC---CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEE-EeCCC--cEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYD---GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDK--TTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~--~i~~~d~~~~~~~~~~~   76 (131)
                      .|+|+|++++.....   ..|.+||+.......+..+.+....+.|+|+++.++. .+.++  .+++||+.+++.. .+.
T Consensus       196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~  274 (417)
T TIGR02800       196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT  274 (417)
T ss_pred             cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC
Confidence            489999999887653   3799999875444444455566777899999987664 44443  5888998876543 333


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeC-CC--cEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCST-DQ--HIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~  112 (131)
                      .+........|+|+++ ++..+. ++  .|+++|+.+++.
T Consensus       275 ~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       275 NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            3334445678999976 554433 33  588888876653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1538|consensus

Probab=99.06  E-value=2e-09  Score=73.45  Aligned_cols=77  Identities=17%  Similarity=0.286  Sum_probs=66.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .|..++|-|||..++.+. +..+.+||...|..+.++++|.+.|.+++|+.+|+ +++|+.|..|.+|+.+ .+-+..++
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeec
Confidence            688999999999988874 44799999999999999999999999999999988 8999999999999864 33334444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=2.6e-08  Score=66.52  Aligned_cols=109  Identities=16%  Similarity=0.137  Sum_probs=72.6

Q ss_pred             cccCCCCEEEEE-eCCC--eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CCc--EEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATG-SYDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKT--TIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~-~~d~--~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~--i~~~d~~~~~~~~~~~   76 (131)
                      .|+|||+.|+.. +.++  .|.+||+.+.....+..+...+....|+|+++.++..+. ++.  ++.+|+.+++. ..+.
T Consensus       249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt  327 (429)
T PRK03629        249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT  327 (429)
T ss_pred             EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee
Confidence            589999988865 3344  488889885555555555556788899999998876654 444  44556666543 3333


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeC-C--CcEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCST-D--QHIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~-d--~~i~i~d~~~~~~  112 (131)
                      ..........|+|+++ ++.... +  ..|.+||+.+++.
T Consensus       328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~  367 (429)
T PRK03629        328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  367 (429)
T ss_pred             cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence            3334456788999987 544433 2  3588899987753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.03  E-value=3.4e-08  Score=63.76  Aligned_cols=106  Identities=11%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC--CC---ceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeee-
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD--GS---LKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQ-   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~--~~---~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~-   74 (131)
                      +++|+++++++++. ++.|.+|++.  +.   .+..+. +......++++|+++++++++ .++.|.+||+.+...+.. 
T Consensus        86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            36889999988775 7889999875  22   222222 223457788999998886555 579999999976332211 


Q ss_pred             ----ee-cCCCCeEEEEEcCCCc-EEEEeC-CCcEEEEeCCC
Q psy3840          75 ----FS-FHSAPALDVDWQSNTS-FASCST-DQHIHVCKLHS  109 (131)
Q Consensus        75 ----~~-~~~~~v~~~~~~~~~~-~~~~~~-d~~i~i~d~~~  109 (131)
                          .. ........+.|+|+++ +++... ++.|.+|+++.
T Consensus       165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence                11 1123467899999987 545544 88999999973

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=5.3e-08  Score=65.18  Aligned_cols=93  Identities=15%  Similarity=0.139  Sum_probs=70.0

Q ss_pred             eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-E-
Q psy3840          19 YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-F-   93 (131)
Q Consensus        19 ~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-   93 (131)
                      .|.++|..+.....+..+...+...+|+|+|+.++..+.   +..+++||+.+++.. .+......+....|+|+++ + 
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEE
Confidence            688888887777777778889999999999998887653   467999999887653 3444455677889999986 5 


Q ss_pred             EEEeCCC--cEEEEeCCCCee
Q psy3840          94 ASCSTDQ--HIHVCKLHSDKP  112 (131)
Q Consensus        94 ~~~~~d~--~i~i~d~~~~~~  112 (131)
                      ++.+.++  .|++||+.+++.
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~  282 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTT  282 (435)
T ss_pred             EEEecCCCceEEEEECCCCce
Confidence            3555554  488889887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=6.5e-08  Score=64.62  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=72.8

Q ss_pred             cccCCCCEEEEEeCC---CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCC--cEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYD---GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDK--TTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~--~i~~~d~~~~~~~~~~~   76 (131)
                      .|+|||+.|+..+.+   ..|.+|++.+.....+....+......|+|+|+.++ +...++  .++++|+.+++.. .+.
T Consensus       205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt  283 (430)
T PRK00178        205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT  283 (430)
T ss_pred             eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ecc
Confidence            589999999876543   358888987544444444445556789999998776 444444  5888899877643 344


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEe-CCC--cEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCS-TDQ--HIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~-~d~--~i~i~d~~~~~~  112 (131)
                      .+........|+|+++ ++..+ .++  .|+++|+.+++.
T Consensus       284 ~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        284 NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            3444556788999976 54433 333  577788877653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=1.5e-08  Score=67.65  Aligned_cols=110  Identities=22%  Similarity=0.213  Sum_probs=70.1

Q ss_pred             cccCCCCEEEE-EeCCCeEEEEc--CCCCceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEEC--CCcceeeeee
Q psy3840           3 SSRNNGSFLAT-GSYDGYARIWT--SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDA--ASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~-~~~d~~i~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~--~~~~~~~~~~   76 (131)
                      .|+|||+.|+. .+.++...+|.  ..+.....+..+.+......|+|+|+.++..+. ++...+|.+  ..++. ..+.
T Consensus       246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt  324 (427)
T PRK02889        246 AWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVT  324 (427)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEe
Confidence            58999998874 56677766664  555555556555555667889999998775543 455566654  44433 2222


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCC---cEEEEeCCCCeee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQ---HIHVCKLHSDKPV  113 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~---~i~i~d~~~~~~~  113 (131)
                      ..........|+|+++ ++..+.++   .|.+||+.+++..
T Consensus       325 ~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        325 FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence            2223344678999987 55444333   6999999877543

>KOG1409|consensus

Probab=99.01  E-value=1.4e-09  Score=68.67  Aligned_cols=66  Identities=20%  Similarity=0.392  Sum_probs=58.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC--CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG--SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      +|.+....+.+|..|..+.+||+.+  .....+.+|...+..+...+--+.+.+++.||.|.+||++.
T Consensus       204 ~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  204 KWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            5788889999999999999999873  44567789999999998888888999999999999999874

>KOG4532|consensus

Probab=99.01  E-value=5.9e-08  Score=59.82  Aligned_cols=115  Identities=10%  Similarity=-0.002  Sum_probs=85.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CC-cee-ecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee-----e
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GS-LKS-TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE-----Q   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~-~~~-~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~-----~   73 (131)
                      ++++++.+.++.++...|..|.+.  +. .+. .+..-++.-.+..|+.....++++..||++.+||++.....     .
T Consensus       165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss  244 (344)
T KOG4532|consen  165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS  244 (344)
T ss_pred             EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence            578999999999998899999876  22 222 22333444567789999999999999999999999864322     2


Q ss_pred             eeecCCCCeEEEEEcCCCc---EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          74 QFSFHSAPALDVDWQSNTS---FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~---~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +-+.|.+.+..+.|++.|.   |+..-.-+.+++.|+|++...+.+.
T Consensus       245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            2345778999999998654   4455556789999999986655543

>KOG4497|consensus

Probab=99.01  E-value=9.4e-09  Score=64.90  Aligned_cols=110  Identities=19%  Similarity=0.198  Sum_probs=85.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|||+|+++|+.++- .+-+-|.+.-.+..+...-+.|.-+.|..+...++ ....++.+.+|++...+--..+.....+
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag   93 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG   93 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence            589999999999765 66677765433333334456788888888766555 5567889999999988877778877789


Q ss_pred             eEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeee
Q psy3840          82 ALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        82 v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      +.+++|+|+|+  +.+..-+-+|.+|.+.+....
T Consensus        94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             ceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            99999999986  566777889999999876543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.00  E-value=3.6e-08  Score=63.64  Aligned_cols=105  Identities=10%  Similarity=0.152  Sum_probs=70.9

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC---CCc--eeecccc------cccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCc
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD---GSL--KSTLGQH------KGPIFALKWNKRGNYILSAGV-DKTTIIWDAASG   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~---~~~--~~~~~~~------~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~   69 (131)
                      .|+|++++++++.. ++.|.+|++.   ++.  +..+..+      ......+.++|++++++++.. ++.|.+|++...
T Consensus       181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            47899999988877 8899999986   221  2222211      112335889999999888865 789999998643


Q ss_pred             c----eeeeeecCCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCC
Q psy3840          70 Q----CEQQFSFHSAPALDVDWQSNTS-FASCS-TDQHIHVCKLH  108 (131)
Q Consensus        70 ~----~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~  108 (131)
                      .    .+..... ......+.++|+++ ++++. .++.|.+|++.
T Consensus       261 ~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        261 GSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            2    2222222 23456789999987 55444 48899999874

>KOG1587|consensus

Probab=99.00  E-value=7.3e-09  Score=70.44  Aligned_cols=105  Identities=23%  Similarity=0.309  Sum_probs=80.2

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-----C----CceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECC-Ccceee
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-----G----SLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAA-SGQCEQ   73 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-----~----~~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~-~~~~~~   73 (131)
                      ..+...+++|+.+|.|.--+-.     .    +.......|.+++.++.++|=+. .+++++ |.++++|... ...++.
T Consensus       357 ~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~  435 (555)
T KOG1587|consen  357 PTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLL  435 (555)
T ss_pred             cCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcch
Confidence            3466789999999998873322     1    22445667899999999999444 455554 9999999987 566666


Q ss_pred             eeecCCCCeEEEEEcCCC--cEEEEeCCCcEEEEeCCCC
Q psy3840          74 QFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~~~~  110 (131)
                      .+..+...+++++|+|..  .++++..+|.+.+||+...
T Consensus       436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            666667779999999973  3899999999999999654

>KOG3881|consensus

Probab=98.97  E-value=2.5e-08  Score=63.87  Aligned_cols=111  Identities=13%  Similarity=0.149  Sum_probs=85.5

Q ss_pred             cCCCCEEEEEeCC--CeEEEEcCC-CCceeeccc---------ccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCc-
Q psy3840           5 RNNGSFLATGSYD--GYARIWTSD-GSLKSTLGQ---------HKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASG-   69 (131)
Q Consensus         5 ~~~~~~l~~~~~d--~~i~~~~~~-~~~~~~~~~---------~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~-   69 (131)
                      ..+..++++|+..  ..+.+||++ .+.+..-+.         -.-.++.+.|-+.  ...++++..-+.+++||.+.+ 
T Consensus       158 ~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR  237 (412)
T KOG3881|consen  158 DTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR  237 (412)
T ss_pred             CCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC
Confidence            3456778889988  789999987 333322221         1234567788886  788999999999999999875 


Q ss_pred             ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEE
Q psy3840          70 QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        70 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~  115 (131)
                      +++..+.....+++++...|++. ++++..-+.+..||++.++.+..
T Consensus       238 RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  238 RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence            45667776778999999999977 88999999999999998876554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.96  E-value=2.6e-08  Score=66.80  Aligned_cols=74  Identities=9%  Similarity=0.163  Sum_probs=61.2

Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          35 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        35 ~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      .....+.+++++|+...++.|+.||++.+||...+.....  ...-.+..++|+|+|. ++.|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            4667899999999999999999999999999877643322  3345678899999987 788888999999998643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.95  E-value=2e-07  Score=61.16  Aligned_cols=109  Identities=15%  Similarity=0.153  Sum_probs=75.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeeeeecC--
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFH--   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~~~~~--   78 (131)
                      .++||++++++.+.||.|.++|+. ++.+.++.... ....++++++|+++++++ ..+.+.++|.++.+.++.+...  
T Consensus        43 ~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~  121 (369)
T PF02239_consen   43 KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM  121 (369)
T ss_dssp             E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE
T ss_pred             EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccc
Confidence            478999999999999999999987 66666665543 457899999999998776 4899999999999888877642  


Q ss_pred             -----CCCeEEEEEcCCCc-EEEE-eCCCcEEEEeCCCCee
Q psy3840          79 -----SAPALDVDWQSNTS-FASC-STDQHIHVCKLHSDKP  112 (131)
Q Consensus        79 -----~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~~~~~  112 (131)
                           ..++..+..+|... ++.. -..++|.+.|....+.
T Consensus       122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen  122 PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             -TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence                 23566777777755 5444 4457888888766543

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=1.7e-07  Score=63.02  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=70.6

Q ss_pred             cccCCCCEEEEEeC-CC--eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEE-EeCCCc--EEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSY-DG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKT--TIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~--~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~--i~~~d~~~~~~~~~~~   76 (131)
                      .|+|||+.|+..+. ++  .|.++|+.+.....+....+......|+|+++.++. .+.++.  |+++|+.+++. ..+.
T Consensus       224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt  302 (448)
T PRK04792        224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRIT  302 (448)
T ss_pred             eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECc
Confidence            58999999987654 33  477888874433333333334457799999997764 455664  77788877754 3344


Q ss_pred             cCCCCeEEEEEcCCCc-EEE-EeCCC--cEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FAS-CSTDQ--HIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~-~~~d~--~i~i~d~~~~~~  112 (131)
                      .+........|+|+++ ++. ...++  .|+++|+.+++.
T Consensus       303 ~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        303 RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            3444567789999987 543 33333  577778876654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.89  E-value=2.6e-07  Score=61.40  Aligned_cols=108  Identities=21%  Similarity=0.297  Sum_probs=73.2

Q ss_pred             cccCCCCEEEEE-eCCC--eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATG-SYDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK--TTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~-~~d~--~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~--~i~~~d~~~~~~~~~~~   76 (131)
                      .|+|+++.|+.. +.++  .|.+|++.+.....+..+........|+|+++.++..+. ++  .++++|+.+++. ..+.
T Consensus       240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~  318 (417)
T TIGR02800       240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLT  318 (417)
T ss_pred             EECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEee
Confidence            479999877654 4444  588888876555555555555567789999998776544 33  577788876654 3333


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCC---cEEEEeCCCCe
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQ---HIHVCKLHSDK  111 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~---~i~i~d~~~~~  111 (131)
                      ..........|+|+++ ++....++   .|.+||+.++.
T Consensus       319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            3445567789999987 65555554   78899988754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315|consensus

Probab=98.88  E-value=1.1e-07  Score=63.42  Aligned_cols=101  Identities=21%  Similarity=0.321  Sum_probs=77.7

Q ss_pred             ccCCCCEEEEEe--CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcceeeeeecC
Q psy3840           4 SRNNGSFLATGS--YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         4 ~~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      |++++..++++-  .--.+.+||++++++..+.  +++-.++-|+|.|++++.++-   .|.+-+||..+.+++..+...
T Consensus       278 W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~  355 (566)
T KOG2315|consen  278 WSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA  355 (566)
T ss_pred             ECCCCCEEEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence            788887766643  2446899999988887654  356688999999999888765   588999999998888777653


Q ss_pred             CCCeEEEEEcCCCc-EEEEeC------CCcEEEEeCC
Q psy3840          79 SAPALDVDWQSNTS-FASCST------DQHIHVCKLH  108 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~------d~~i~i~d~~  108 (131)
                        ..+-..|+|||. +++++.      |+.++||+..
T Consensus       356 --~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  356 --NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             --CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence              334578999998 766654      6778899875

>KOG1963|consensus

Probab=98.86  E-value=1.3e-07  Score=65.75  Aligned_cols=116  Identities=16%  Similarity=0.216  Sum_probs=91.3

Q ss_pred             ccccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC---
Q psy3840           2 QSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH---   78 (131)
Q Consensus         2 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~---   78 (131)
                      .+|+++|.+|++|+..+.+-+|....+...-+..-.++|..+.++|++.+.+....|..|.+....+.....++.+.   
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~  336 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP  336 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC
Confidence            36899999999999999999999874445556667789999999999999999999999999887655443333321   


Q ss_pred             --------CCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          79 --------SAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        79 --------~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                              .+-.+.++++|. +.++..+..+.|++||+-+.+.+..+.
T Consensus       337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             CccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence                    233567788885 458888999999999998887766553

>KOG1240|consensus

Probab=98.84  E-value=3.5e-08  Score=71.11  Aligned_cols=87  Identities=21%  Similarity=0.364  Sum_probs=70.4

Q ss_pred             EcCCCCceeecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCcc-------eeeeeecCCCCeEEEEEcCCCc-E
Q psy3840          23 WTSDGSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQ-------CEQQFSFHSAPALDVDWQSNTS-F   93 (131)
Q Consensus        23 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~   93 (131)
                      |+.+|..+..+..|...+..++.+++ +.++++|+.||++++||+++-.       ...++...+.++..+...+.+. +
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            78889999999999999989988874 5999999999999999997521       1223333456788888888865 9


Q ss_pred             EEEeCCCcEEEEeCCC
Q psy3840          94 ASCSTDQHIHVCKLHS  109 (131)
Q Consensus        94 ~~~~~d~~i~i~d~~~  109 (131)
                      +.++.||.|.+.++..
T Consensus      1114 Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             EEEcCCCeEEEEEccc
Confidence            9999999999998865

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=5.3e-07  Score=60.33  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             cccCCCCEEEE-EeCCC--eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLAT-GSYDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK--TTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~-~~~d~--~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~--~i~~~d~~~~~~~~~~~   76 (131)
                      .|+|||+.|+. ...++  .|.++|+.++....+..+........|+|+++.++..+. ++  .++++|+.+++... +.
T Consensus       249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt  327 (430)
T PRK00178        249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT  327 (430)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee
Confidence            58999998874 44455  577889886665556555555667889999987765543 33  57777887776432 22


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeC-CC--cEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCST-DQ--HIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~  112 (131)
                      ..........|+|+++ ++.... ++  .|.++|+.+++.
T Consensus       328 ~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        328 FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            2222334578999987 544332 33  588899887653

>KOG3914|consensus

Probab=98.84  E-value=1.4e-08  Score=65.07  Aligned_cols=72  Identities=22%  Similarity=0.279  Sum_probs=58.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC--ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS--LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      +++||+++|+++..|+.|++-.....  .-.-..||...|..++.-++. .+++++.|+++++||+++++.+..+
T Consensus       158 avS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  158 AVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             eecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCccccc
Confidence            47999999999999999998766522  223346799999999877654 4899999999999999999877554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.82  E-value=5.4e-07  Score=55.88  Aligned_cols=45  Identities=9%  Similarity=0.104  Sum_probs=37.4

Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      ...|..|..+|++. |++...+|.|.+|++.+-.+...+..++.+-
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqPg  274 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQPG  274 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCCC
Confidence            35688999999988 8888999999999999988888877655543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=5.6e-07  Score=60.26  Aligned_cols=111  Identities=16%  Similarity=0.220  Sum_probs=66.4

Q ss_pred             cccCCCCEEEEEeC-CC----eEEEEcCCC----CceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-c
Q psy3840           3 SSRNNGSFLATGSY-DG----YARIWTSDG----SLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIW--DAAS-G   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~----~i~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~--d~~~-~   69 (131)
                      .|+|||+.|+..+. +|    .+..|++..    ..........+......|+|+|+.++..+ .++...+|  ++.. +
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g  316 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG  316 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence            58999998887653 23    233466542    22222222223345679999999777554 46654555  4432 2


Q ss_pred             ceeeeeecCCCCeEEEEEcCCCc-EEEEeC-C--CcEEEEeCCCCeee
Q psy3840          70 QCEQQFSFHSAPALDVDWQSNTS-FASCST-D--QHIHVCKLHSDKPV  113 (131)
Q Consensus        70 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d--~~i~i~d~~~~~~~  113 (131)
                      .....+......+....|+|+++ ++.... +  ..|.+||+.+++..
T Consensus       317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~  364 (428)
T PRK01029        317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY  364 (428)
T ss_pred             cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence            23344444445667889999987 554433 2  36999999877553

>KOG4547|consensus

Probab=98.79  E-value=1.6e-07  Score=62.83  Aligned_cols=102  Identities=13%  Similarity=0.124  Sum_probs=80.9

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      +.+-..|.+++.|+.+..|+.. .............+.+++.+||+..+++++.  +|++||+++++.+..+.+|.++|.
T Consensus       111 ~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~  188 (541)
T KOG4547|consen  111 AQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVR  188 (541)
T ss_pred             ccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceE
Confidence            4455678888999999999987 5556666777788999999999998887764  599999999999999999999999


Q ss_pred             EEEEcCC-----Cc-E-EEEeCCCcEEEEeCC
Q psy3840          84 DVDWQSN-----TS-F-ASCSTDQHIHVCKLH  108 (131)
Q Consensus        84 ~~~~~~~-----~~-~-~~~~~d~~i~i~d~~  108 (131)
                      +++|...     |. + .+...+..+.+|-.+
T Consensus       189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             EEEEEEeccccccceeeeccccccceeEEEEE
Confidence            9999654     44 3 333445567777654

>KOG4227|consensus

Probab=98.76  E-value=2.6e-07  Score=59.91  Aligned_cols=108  Identities=11%  Similarity=0.065  Sum_probs=83.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeeccccc---ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce-eee--ee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC-EQQ--FS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~-~~~--~~   76 (131)
                      +|...+.++++|..+++|.+.|+..+...-+..|.   +.|..+..+|..+.+++.+.++.+.+||.+..+. ...  ..
T Consensus       112 ~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A  191 (609)
T KOG4227|consen  112 EFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA  191 (609)
T ss_pred             EEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec
Confidence            46667889999999999999999855544444454   4899999999999999999999999999987552 221  12


Q ss_pred             cCCCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCC
Q psy3840          77 FHSAPALDVDWQSNT-S-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~  110 (131)
                      ........+.|+|.. . +++.+..+.+-+||.+..
T Consensus       192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             CCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence            234567888999973 4 778888888999998854

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.73  E-value=1.5e-06  Score=58.56  Aligned_cols=109  Identities=16%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             cccCCCCEEEE-EeCCCe--EEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLAT-GSYDGY--ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK--TTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~-~~~d~~--i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~--~i~~~d~~~~~~~~~~~   76 (131)
                      .|+|||+.|+. .+.++.  |.++|+.+.....+..+........|+|+++.++..+. ++  .++++|+.+++... +.
T Consensus       268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt  346 (448)
T PRK04792        268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT  346 (448)
T ss_pred             eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee
Confidence            58999998875 455665  66778776666666555556677899999997765543 44  46667777766432 22


Q ss_pred             cCCCCeEEEEEcCCCc-EEEE-eCCC--cEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FASC-STDQ--HIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~-~~d~--~i~i~d~~~~~~  112 (131)
                      ..........|+|+++ ++.. ..++  .|.++|+.+++.
T Consensus       347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            2222334568999987 4443 3334  466678877653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.71  E-value=3e-07  Score=61.89  Aligned_cols=66  Identities=12%  Similarity=0.155  Sum_probs=54.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~   69 (131)
                      +++|+...++.|+.||.|.+||...+..... ...-....++|+|+|..+++|+..|.+.+||+.-.
T Consensus       266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            5789999999999999999999864433222 23345688999999999999999999999998643

>KOG4714|consensus

Probab=98.70  E-value=1.4e-07  Score=57.92  Aligned_cols=63  Identities=21%  Similarity=0.447  Sum_probs=55.1

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q psy3840           6 NNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      ...+.+++|+.||.+.+||..  ..+...++.|..+++.+-|+| ++..+++++.||.+..||..+
T Consensus       190 ~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  190 AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            356788889999999999987  456677889999999999999 788999999999999999764

>KOG1354|consensus

Probab=98.69  E-value=5e-08  Score=61.95  Aligned_cols=116  Identities=12%  Similarity=0.148  Sum_probs=80.6

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC--CCc--eeecc-----cccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCccee-
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD--GSL--KSTLG-----QHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCE-   72 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~--~~~--~~~~~-----~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~-   72 (131)
                      ++.|.+.++++ +|-.|.+|++.  .+.  +.-++     .-+..|++..|+| ..+.++-.+..|+|++.|++..... 
T Consensus       172 ~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd  250 (433)
T KOG1354|consen  172 VNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD  250 (433)
T ss_pred             ecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence            56678888886 57789999976  211  11122     2346788889999 5678888889999999999853211 


Q ss_pred             -----eee----------ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCC-CCeeeEEEeccc
Q psy3840          73 -----QQF----------SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH-SDKPVKSFEGHT  120 (131)
Q Consensus        73 -----~~~----------~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~  120 (131)
                           ...          ..--..|..+.|+++|+++..-.--+|++||+. ..+++.++..|.
T Consensus       251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~  314 (433)
T KOG1354|consen  251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHE  314 (433)
T ss_pred             chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehH
Confidence                 111          111245888999999997666666799999994 457777776654

>KOG1064|consensus

Probab=98.69  E-value=3.9e-08  Score=73.36  Aligned_cols=112  Identities=12%  Similarity=0.240  Sum_probs=87.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe---CCCcEEEEECCCcce-eeeeecC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG---VDKTTIIWDAASGQC-EQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~---~d~~i~~~d~~~~~~-~~~~~~~   78 (131)
                      .|+.+|+.+..+..||.+.+|.+..++...-+.|........|-.  ..+++++   .++.+.+||...... -..-..|
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeec
Confidence            367889999999999999999998777777788888888887764  5566554   367899999754322 1222678


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      .+.++++++.|..+ +++|+.+|.|++||++..+.+..+
T Consensus      2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence            88999999999977 899999999999999876655544

>KOG1064|consensus

Probab=98.67  E-value=2.4e-08  Score=74.40  Aligned_cols=93  Identities=15%  Similarity=0.253  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcE
Q psy3840          16 YDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF   93 (131)
Q Consensus        16 ~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~   93 (131)
                      .++.+.+||..  +........|.+.++++++.|..+.+++|+++|.+++||++..+.+..++.         ++....+
T Consensus      2313 d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~~~~~f 2383 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDTREYF 2383 (2439)
T ss_pred             CCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hhhhhee
Confidence            36679999964  322222378999999999999999999999999999999998877666554         3333448


Q ss_pred             EEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          94 ASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        94 ~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ++++..|.++||++.....+.++.
T Consensus      2384 ~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eccCcccceEEEEccccchhhcCc
Confidence            999999999999998776666553

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.66  E-value=2.9e-06  Score=62.50  Aligned_cols=110  Identities=13%  Similarity=0.071  Sum_probs=74.8

Q ss_pred             cccCCCCEEEEE-eCCCeEEEEcCCCCceeecc--------------cc--------cccEEEEEEcCCCCEEEEEeCCC
Q psy3840           3 SSRNNGSFLATG-SYDGYARIWTSDGSLKSTLG--------------QH--------KGPIFALKWNKRGNYILSAGVDK   59 (131)
Q Consensus         3 ~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~--------------~~--------~~~i~~~~~~~~~~~~~s~~~d~   59 (131)
                      +++|+++.++++ ..++.|++||+.......+.              ..        -.....++++++|..+++-..++
T Consensus       746 avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~  825 (1057)
T PLN02919        746 SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH  825 (1057)
T ss_pred             EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC
Confidence            367888755544 45789999998632111110              00        01235789999999888888899


Q ss_pred             cEEEEECCCcceeeeee-------------cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCee
Q psy3840          60 TTIIWDAASGQCEQQFS-------------FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        60 ~i~~~d~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~  112 (131)
                      .|++||..++.......             ..-.....++++++++ +++-+.++.|++||+++++.
T Consensus       826 rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        826 KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999998765442221             1112467889999988 56667788999999988764

>KOG4714|consensus

Probab=98.65  E-value=6.9e-08  Score=59.24  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=59.8

Q ss_pred             ccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcce-eeeeecCCCCeEEEEEcCC-C-cEEEEeCCCcEEEEeCCC
Q psy3840          38 GPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQC-EQQFSFHSAPALDVDWQSN-T-SFASCSTDQHIHVCKLHS  109 (131)
Q Consensus        38 ~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~-~-~~~~~~~d~~i~i~d~~~  109 (131)
                      ..+.+++-+| +.+.+++|+.||.+.+||.++... ...+..|+.+++.+.|+|. + +|++++.||.+..||-.+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3488889899 566778888899999999998644 3456778999999999996 3 499999999999999764

>KOG4190|consensus

Probab=98.61  E-value=2e-07  Score=63.00  Aligned_cols=110  Identities=20%  Similarity=0.284  Sum_probs=73.9

Q ss_pred             CCCEEEEEeCCCeEEEEcCC--C------CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee---
Q psy3840           7 NGSFLATGSYDGYARIWTSD--G------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF---   75 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~--~------~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~---   75 (131)
                      +.+.+++++.|.+|++|.++  +      .+..++..|..+|..+.|-.+-++++++  ||-+.+||.--++.+...   
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da  823 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA  823 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence            45677888999999999976  2      2456778899999999888777776654  667888987544322211   


Q ss_pred             --------------------------------------------e-----cCCCCeEEEEEcCCCc-EEEEeCCCcEEEE
Q psy3840          76 --------------------------------------------S-----FHSAPALDVDWQSNTS-FASCSTDQHIHVC  105 (131)
Q Consensus        76 --------------------------------------------~-----~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~  105 (131)
                                                                  +     +....+.+++..+.|. ++.+-.+|.|.+.
T Consensus       824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L  903 (1034)
T KOG4190|consen  824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAIL  903 (1034)
T ss_pred             cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence                                                        0     1112345555555544 6666677788888


Q ss_pred             eCCCCeeeEEEec
Q psy3840         106 KLHSDKPVKSFEG  118 (131)
Q Consensus       106 d~~~~~~~~~~~~  118 (131)
                      |.|+|+.+.++.+
T Consensus       904 DaR~G~vINswrp  916 (1034)
T KOG4190|consen  904 DARNGKVINSWRP  916 (1034)
T ss_pred             ecCCCceeccCCc
Confidence            8888877765543

>KOG1409|consensus

Probab=98.59  E-value=6.4e-07  Score=57.02  Aligned_cols=84  Identities=23%  Similarity=0.459  Sum_probs=69.7

Q ss_pred             CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee-eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEE
Q psy3840          27 GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE-QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV  104 (131)
Q Consensus        27 ~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i  104 (131)
                      -..+.++.+|.+.+.++.|.|....+.++..|..+.+||+--.+-. ..+.+|...|..+.+.+-.+ +.+++.|+.|.+
T Consensus       187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~  266 (404)
T KOG1409|consen  187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV  266 (404)
T ss_pred             CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence            3566788899999999999999999999999999999998755433 45567778888887766544 899999999999


Q ss_pred             EeCCCC
Q psy3840         105 CKLHSD  110 (131)
Q Consensus       105 ~d~~~~  110 (131)
                      ||++..
T Consensus       267 w~mn~~  272 (404)
T KOG1409|consen  267 WNMNVK  272 (404)
T ss_pred             Eeccce
Confidence            998754

>KOG2695|consensus

Probab=98.59  E-value=1.3e-07  Score=60.14  Aligned_cols=104  Identities=15%  Similarity=0.323  Sum_probs=76.6

Q ss_pred             CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-----ceeeeeecCCCCeEEEEEcC-C
Q psy3840          17 DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-----QCEQQFSFHSAPALDVDWQS-N   90 (131)
Q Consensus        17 d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~~~-~   90 (131)
                      +..|-+-|+.++....+. ..+.|.++.|...++++..|..+|.|...|++.+     .+...+ .|...++++..-. +
T Consensus       233 sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s  310 (425)
T KOG2695|consen  233 SQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFS  310 (425)
T ss_pred             cceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccc
Confidence            445566666655544444 4456788889988999999999999999999864     233333 3567788777644 4


Q ss_pred             Cc-EEEEeCCCcEEEEeCCCCee---eEEEecccce
Q psy3840          91 TS-FASCSTDQHIHVCKLHSDKP---VKSFEGHTRV  122 (131)
Q Consensus        91 ~~-~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~  122 (131)
                      ++ |++.+-+|+|.+||+|.-++   ++++.+|-+.
T Consensus       311 ~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~  346 (425)
T KOG2695|consen  311 QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL  346 (425)
T ss_pred             cceEeeccCcCceeEeeehhhhcccceeeeeccccc
Confidence            44 88888999999999998777   8999888653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.58  E-value=6.2e-06  Score=53.83  Aligned_cols=112  Identities=8%  Similarity=0.147  Sum_probs=71.9

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC--CCce---eeccc----c--cccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD--GSLK---STLGQ----H--KGPIFALKWNKRGNYILSAGV-DKTTIIWDAAS-   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~--~~~~---~~~~~----~--~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~-   68 (131)
                      .|+|+++++++... +++|.++++.  ....   .....    .  ......++++|++++++++.. +++|.+|++.. 
T Consensus       198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~  277 (345)
T PF10282_consen  198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA  277 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred             EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence            47899999877766 7789998865  2111   11111    1  125788999999998877665 77899999842 


Q ss_pred             -cce--eeeeecCCCCeEEEEEcCCCc-EEEE-eCCCcEEEEeC--CCCeeeE
Q psy3840          69 -GQC--EQQFSFHSAPALDVDWQSNTS-FASC-STDQHIHVCKL--HSDKPVK  114 (131)
Q Consensus        69 -~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~--~~~~~~~  114 (131)
                       ++.  +..+.........+.++|+++ ++.+ ..++.|.+|++  ++|....
T Consensus       278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence             332  333443345578999999987 5444 45678999976  4665433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1645|consensus

Probab=98.58  E-value=4.7e-07  Score=58.63  Aligned_cols=78  Identities=10%  Similarity=0.082  Sum_probs=66.1

Q ss_pred             ecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCC
Q psy3840          32 TLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLH  108 (131)
Q Consensus        32 ~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~  108 (131)
                      .+..+...|..++|+|..+ ++..++.+..|++.|+++...+..+..+ ..+++++|+-+..  +..|..+|.|.|||++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            3445667899999999666 7888999999999999999888888876 7899999987743  7888999999999998


Q ss_pred             CC
Q psy3840         109 SD  110 (131)
Q Consensus       109 ~~  110 (131)
                      ..
T Consensus       267 ~~  268 (463)
T KOG1645|consen  267 QP  268 (463)
T ss_pred             CC
Confidence            64

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.56  E-value=3.4e-05  Score=50.38  Aligned_cols=109  Identities=10%  Similarity=0.152  Sum_probs=79.3

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCC------ceeeccc-------ccccEEEEEEcCCCCEEEEEe----------CCCcEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSDGS------LKSTLGQ-------HKGPIFALKWNKRGNYILSAG----------VDKTTII   63 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~------~~~~~~~-------~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~   63 (131)
                      ++.++.+... |.|.+.|+.+.      ....+..       ..+...-++++|+++.++...          ..+.+.+
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            7878877655 99999996422      2222111       223444589999988877742          1257999


Q ss_pred             EECCCcceeeeeecCCCCeEEEEEcCCCc-E--EEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          64 WDAASGQCEQQFSFHSAPALDVDWQSNTS-F--ASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        64 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~--~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +|..+++.+..+.. ...+..++++|+++ +  ++...++.|.++|..+++.+.++.
T Consensus       284 iD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       284 VDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            99999999988875 45889999999977 3  344467889999999999999884

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4640|consensus

Probab=98.55  E-value=5.8e-07  Score=61.12  Aligned_cols=86  Identities=16%  Similarity=0.102  Sum_probs=70.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEE-EEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-cCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIF-ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~-~~~~   80 (131)
                      .|+|.-..+|.+..+|.|-+..++-..+.++..+..+++ +++|.|+|+.++.|-.||+|++.|..++..+.... ....
T Consensus        27 ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~  106 (665)
T KOG4640|consen   27 EWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVET  106 (665)
T ss_pred             EEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecccccccc
Confidence            478889999999999999999888788888887777777 99999999999999999999999999987766532 1234


Q ss_pred             CeEEEEEc
Q psy3840          81 PALDVDWQ   88 (131)
Q Consensus        81 ~v~~~~~~   88 (131)
                      .+..+.|.
T Consensus       107 ~is~~~w~  114 (665)
T KOG4640|consen  107 DISKGIWD  114 (665)
T ss_pred             chheeecc
Confidence            56666664

>KOG3621|consensus

Probab=98.55  E-value=6.6e-07  Score=61.50  Aligned_cols=107  Identities=12%  Similarity=0.172  Sum_probs=81.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeeccc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee-----ee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-----QF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~-----~~   75 (131)
                      .++..+.+++.|+.-|.+.+|+-.++....++.  -.+.+.....+++..+++.|+..|.|.++.+.+.....     ..
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~  119 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC  119 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence            456678999999999999999977555444433  44555666778888899999999999999887642211     11


Q ss_pred             -ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          76 -SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        76 -~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                       ..|...|++++|++++. +.+|...|+|..-.+.+
T Consensus       120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence             12567899999999987 99999999998877765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=1.5e-05  Score=53.39  Aligned_cols=109  Identities=13%  Similarity=0.118  Sum_probs=69.0

Q ss_pred             cccCCCCE-EEEEeCC---CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEE-EeCC--CcEEEEECCCcceeeee
Q psy3840           3 SSRNNGSF-LATGSYD---GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILS-AGVD--KTTIIWDAASGQCEQQF   75 (131)
Q Consensus         3 ~~~~~~~~-l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d--~~i~~~d~~~~~~~~~~   75 (131)
                      .|+|+|+. ++..+.+   ..|.++|+.+.....+....+......|+|+|+.++. .+.+  ..+.++|+..++. ..+
T Consensus       194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~L  272 (419)
T PRK04043        194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQI  272 (419)
T ss_pred             EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEc
Confidence            58999985 6644443   4588888875544444445555667789999986654 3333  4677888877764 334


Q ss_pred             ecCCCCeEEEEEcCCCc-EEE-EeCCC--cEEEEeCCCCee
Q psy3840          76 SFHSAPALDVDWQSNTS-FAS-CSTDQ--HIHVCKLHSDKP  112 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~-~~~-~~~d~--~i~i~d~~~~~~  112 (131)
                      ...........|+||++ ++. ....+  .|++.|+.+++.
T Consensus       273 T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        273 TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            33333334567999986 433 33333  588888877654

>KOG4640|consensus

Probab=98.50  E-value=1.9e-06  Score=58.74  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=68.7

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE-EEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeE
Q psy3840          37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL-DVDWQSNTS-FASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                      ...+..+.|+|.-.++|.+..+|.+.+..+. .+.+.+++.+...+. +++|.|||+ ++.|-.||+|++.|..++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3467889999999999999999999999988 778888886666666 999999999 7889999999999999998777


Q ss_pred             E
Q psy3840         115 S  115 (131)
Q Consensus       115 ~  115 (131)
                      .
T Consensus        99 ~   99 (665)
T KOG4640|consen   99 S   99 (665)
T ss_pred             c
Confidence            6

>KOG2066|consensus

Probab=98.48  E-value=5.3e-06  Score=58.04  Aligned_cols=110  Identities=15%  Similarity=0.219  Sum_probs=76.4

Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCC-----CCEEEEEeCCCcEEEEECC--CcceeeeeecC
Q psy3840           6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR-----GNYILSAGVDKTTIIWDAA--SGQCEQQFSFH   78 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~s~~~d~~i~~~d~~--~~~~~~~~~~~   78 (131)
                      .+|+++++|+.||+|.+..+......+......++.+++++|+     .+.+++|+..| +.++.-+  ..+....+...
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence            3689999999999999877653332232334568999999997     46799999988 6665422  12222245556


Q ss_pred             CCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          79 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .++|.++.|.  |.+++=..|-.|++||+.+.+.+..+..
T Consensus       160 eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  160 EGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             ccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCC
Confidence            7899999994  3444444555689999998888777653

>KOG0309|consensus

Probab=98.42  E-value=2.2e-06  Score=59.73  Aligned_cols=117  Identities=21%  Similarity=0.317  Sum_probs=85.2

Q ss_pred             CEEEEEeCCCeEEEEcCC----CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc-ceeeeeecCCCCe
Q psy3840           9 SFLATGSYDGYARIWTSD----GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPA   82 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~v   82 (131)
                      .+-++......-.+|++.    ......+.+|...++.+.|+| ....+++++.|..+..||+++. ..+..........
T Consensus        82 ~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a  161 (1081)
T KOG0309|consen   82 PYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA  161 (1081)
T ss_pred             ceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence            344444445556678864    344456788999999999999 5567889999999999999975 3455555555666


Q ss_pred             EEEEEcCC-CcEEEEeCCCcEEEEeCCCC-eeeEEEecccceEEE
Q psy3840          83 LDVDWQSN-TSFASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYL  125 (131)
Q Consensus        83 ~~~~~~~~-~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~  125 (131)
                      ..++|+.. +.+++.+..+.|.+||++.| .++..+++|...++.
T Consensus       162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~  206 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNS  206 (1081)
T ss_pred             ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeeh
Confidence            77899764 55666677788999999987 577778877655543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.41  E-value=5.4e-05  Score=48.62  Aligned_cols=107  Identities=16%  Similarity=0.369  Sum_probs=77.0

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC--CCcee--eccccccc----------EEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD--GSLKS--TLGQHKGP----------IFALKWNKRGNYILSAGV-DKTTIIWDA   66 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~--~~~~~--~~~~~~~~----------i~~~~~~~~~~~~~s~~~-d~~i~~~d~   66 (131)
                      +.++++++++++.. .|.|.++.++  |....  ....|.+.          +....+.|+++++++.+. --.+.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            45788999999877 6789999875  32211  12234444          888999999999988765 357899999


Q ss_pred             CCcceeeee---ecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCC
Q psy3840          67 ASGQCEQQF---SFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        67 ~~~~~~~~~---~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~  109 (131)
                      ..++....-   .........|.|+|+++  .+..--+++|.+|....
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            977643221   12345678899999998  45666789999998876

>KOG1334|consensus

Probab=98.40  E-value=2e-06  Score=57.05  Aligned_cols=111  Identities=23%  Similarity=0.372  Sum_probs=86.7

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeec-ccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCC-cce--eeeee
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTL-GQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAAS-GQC--EQQFS   76 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~-~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~-~~~--~~~~~   76 (131)
                      |+..|..+++|+.|..|.+||=. +.....+ .+|...|..-.|-|  +.+.+++.+.||.+++=.+.. +..  ...+.
T Consensus       150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~  229 (559)
T KOG1334|consen  150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA  229 (559)
T ss_pred             ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence            67789999999999999999944 5544443 57888888888988  567889999999999866543 322  34455


Q ss_pred             cCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeE
Q psy3840          77 FHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                      .|.+++..++..|+..  |.+++.|+.+.-+|++...+-.
T Consensus       230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~  269 (559)
T KOG1334|consen  230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE  269 (559)
T ss_pred             cccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence            6888999999999743  9999999999999998775433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.39  E-value=4.9e-05  Score=56.31  Aligned_cols=110  Identities=6%  Similarity=-0.030  Sum_probs=69.9

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCCCCceeecccc---------------cccEEEEEEcCCCCE-EEEEeCCCcEEEEEC
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSDGSLKSTLGQH---------------KGPIFALKWNKRGNY-ILSAGVDKTTIIWDA   66 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~-~~s~~~d~~i~~~d~   66 (131)
                      ++| ++..+++...++.|++||.....+..+.+.               -.....++++|++.. +++...++.|++||+
T Consensus       690 ~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~  769 (1057)
T PLN02919        690 FEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDL  769 (1057)
T ss_pred             EecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence            456 445556656678899999764333222110               123456899999884 455556789999999


Q ss_pred             CCcceeeee-------------ec--------CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          67 ASGQCEQQF-------------SF--------HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        67 ~~~~~~~~~-------------~~--------~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      .++......             ..        .-.....+++++++. +++...++.|++||..++...
T Consensus       770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            875432110             00        011346788999887 566677889999999876544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.38  E-value=0.00016  Score=47.32  Aligned_cols=110  Identities=7%  Similarity=0.025  Sum_probs=77.7

Q ss_pred             CCCEEEEEeCC-----CeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCcc
Q psy3840           7 NGSFLATGSYD-----GYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGV----------DKTTIIWDAASGQ   70 (131)
Q Consensus         7 ~~~~l~~~~~d-----~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~----------d~~i~~~d~~~~~   70 (131)
                      ++.++++-...     ++|.+.|.. ++.+.++..-..+- .+ ++|+++.++.+..          +..|.+||..+.+
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            44555554443     789999987 55555555433333 34 8999998777655          7889999999999


Q ss_pred             eeeeeecCCC-------CeEEEEEcCCCc-EEEEe-C-CCcEEEEeCCCCeeeEEEec
Q psy3840          71 CEQQFSFHSA-------PALDVDWQSNTS-FASCS-T-DQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        71 ~~~~~~~~~~-------~v~~~~~~~~~~-~~~~~-~-d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .+..+.....       ....++++|+++ ++... . +..+.+.|+.+++.+.++..
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence            9887764222       234688899988 54444 3 68899999999988887754

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.37  E-value=4.6e-05  Score=50.31  Aligned_cols=109  Identities=11%  Similarity=0.005  Sum_probs=74.0

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC-CeEEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-PALDV   85 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~   85 (131)
                      +..+++++.+|.+..+|.. ++.+..... .. ....  ...+..++.++.+|.+..+|..+++.+........ .....
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence            4677778889999999986 665554431 11 1111  12466778888999999999999987765532111 11222


Q ss_pred             EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      .. .++.+++++.+|.++++|.++++.+.+++.+..
T Consensus       317 ~i-~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~  351 (377)
T TIGR03300       317 AV-VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS  351 (377)
T ss_pred             EE-ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence            22 245688889999999999999999988875543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.37  E-value=7.9e-07  Score=56.20  Aligned_cols=116  Identities=14%  Similarity=0.183  Sum_probs=78.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---CC-ceeecccc-----cccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcce-
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---GS-LKSTLGQH-----KGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQC-   71 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~-~~~~~~~~-----~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~-   71 (131)
                      +++.|.+.++++ .|-.|.+|++.   +. .+..++.|     +..|++..|+| ..+.+.-.+..|.|++-|++.... 
T Consensus       179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence            356667777776 57789999976   21 12222333     45788889999 455666777899999999984321 


Q ss_pred             -----eee----------eecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCC-eeeEEEecc
Q psy3840          72 -----EQQ----------FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGH  119 (131)
Q Consensus        72 -----~~~----------~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~  119 (131)
                           +..          +.+....+..+.|+++|+++.+..-.++++||.+.. .++.++..|
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechH
Confidence                 111          112235688899999999777666779999999865 566666444

>KOG1334|consensus

Probab=98.35  E-value=1.3e-06  Score=57.88  Aligned_cols=107  Identities=15%  Similarity=0.243  Sum_probs=82.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---C----------Cceee-cccccc--cEEEEE-EcCCCCEEEEEeCCCcEEEEE
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---G----------SLKST-LGQHKG--PIFALK-WNKRGNYILSAGVDKTTIIWD   65 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~----------~~~~~-~~~~~~--~i~~~~-~~~~~~~~~s~~~d~~i~~~d   65 (131)
                      .|+.++.-+++.-.|-.|++++-.   |          ..+.. +++|..  .|..+. |-|...++++|+.-|.|.+|+
T Consensus       343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence            366566666666678889999644   3          22233 677764  466676 467899999999999999999


Q ss_pred             CCCcceeeeeecCCCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCC
Q psy3840          66 AASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHS  109 (131)
Q Consensus        66 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~  109 (131)
                      -.+++.+.-+.+.+.-|+|+.-+|- ..|++++-|..|+||-..+
T Consensus       423 K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  423 KKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             cchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            9999998888887778888888886 4589999999999998743

>smart00320 WD40 WD40 repeats

Probab=98.34  E-value=2.2e-06  Score=36.62  Aligned_cols=37  Identities=38%  Similarity=0.700  Sum_probs=31.8

Q ss_pred             ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3840          29 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD   65 (131)
Q Consensus        29 ~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d   65 (131)
                      ....+..|...+.++.|++++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3445567888999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2041|consensus

Probab=98.33  E-value=5.4e-06  Score=57.84  Aligned_cols=102  Identities=17%  Similarity=0.411  Sum_probs=77.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---------C-------CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---------G-------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA   66 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---------~-------~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~   66 (131)
                      +|+....++++|+.||.+++-.+.         |       ..-.++.+|.+.|..+.|+.+.+.+-+.+.+|.|.+|-+
T Consensus        21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml  100 (1189)
T KOG2041|consen   21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML  100 (1189)
T ss_pred             EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence            588899999999999999987543         1       112467899999999999999999999999999999998


Q ss_pred             CCcceeeee--ecCCCCeEEEEEcCCCc-EEEEeCCCcEEE
Q psy3840          67 ASGQCEQQF--SFHSAPALDVDWQSNTS-FASCSTDQHIHV  104 (131)
Q Consensus        67 ~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i  104 (131)
                      -++.=...+  ......|.+++|..+|. +...-.||.|.+
T Consensus       101 ykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen  101 YKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             ecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence            776432222  12345688999988875 666666666543

>KOG4532|consensus

Probab=98.32  E-value=5.3e-05  Score=47.23  Aligned_cols=100  Identities=13%  Similarity=0.125  Sum_probs=68.5

Q ss_pred             EEEEEeCCCeEEEEcCCCCceeecccccc--cEEEEEEcCCCCEEEEEeCCCcEEEEECCC-cceeeeee--cCCCCeEE
Q psy3840          10 FLATGSYDGYARIWTSDGSLKSTLGQHKG--PIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFS--FHSAPALD   84 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~-~~~~~~~~--~~~~~v~~   84 (131)
                      .+..++.|.++++.++++..... ..|..  ...++.++++++++++.+....+..|.+.. ++.+....  ...+.-.+
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~-~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~  208 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKF-AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY  208 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccc-eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence            45556677778877766333221 11322  267889999999999999999999998864 33333322  22334456


Q ss_pred             EEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          85 VDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        85 ~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      ..|+.... ++++..||++.|||+|..
T Consensus       209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  209 NSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             eeeccCcceEEEEecCCcEEEEEeccc
Confidence            67776654 999999999999999865

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.32  E-value=5.7e-05  Score=49.86  Aligned_cols=109  Identities=11%  Similarity=0.103  Sum_probs=74.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      .+..+++++.++.+..+|.. |+.+..............  .++..++.++.++.++.+|..+|+.+...... ..+.+.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~  140 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSP  140 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecC
Confidence            46688888889999999965 777665543332111222  25677888889999999999999987765532 222211


Q ss_pred             EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ....++.++.+..++.++.+|.++++.+.++..
T Consensus       141 p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       141 PLVANGLVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             CEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence            111245677778899999999999988776543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1354|consensus

Probab=98.30  E-value=1.3e-05  Score=51.39  Aligned_cols=105  Identities=19%  Similarity=0.317  Sum_probs=73.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC--CC----ceeecccc------------cccEEEEEEcCCC--CEEEEEeCCCcEEE
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD--GS----LKSTLGQH------------KGPIFALKWNKRG--NYILSAGVDKTTII   63 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~--~~----~~~~~~~~------------~~~i~~~~~~~~~--~~~~s~~~d~~i~~   63 (131)
                      |..+|++|++|+.+|.|-+|.-.  .+    ....++.|            ..+|..+.|.+++  ..++....|.++++
T Consensus        33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl  112 (433)
T KOG1354|consen   33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL  112 (433)
T ss_pred             eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence            67789999999999999998643  21    22233333            3567888998854  46777889999999


Q ss_pred             EECCCccee-----------------------------------eee-ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840          64 WDAASGQCE-----------------------------------QQF-SFHSAPALDVDWQSNTSFASCSTDQHIHVCKL  107 (131)
Q Consensus        64 ~d~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~  107 (131)
                      |-+......                                   +.+ ..|...+.++.++.|.......+|-.|.+|++
T Consensus       113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnl  192 (433)
T KOG1354|consen  113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNL  192 (433)
T ss_pred             eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccc
Confidence            987642110                                   000 13455688899988877555667888999998


Q ss_pred             C
Q psy3840         108 H  108 (131)
Q Consensus       108 ~  108 (131)
                      .
T Consensus       193 e  193 (433)
T KOG1354|consen  193 E  193 (433)
T ss_pred             c
Confidence            6

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=0.00011  Score=49.42  Aligned_cols=107  Identities=11%  Similarity=0.043  Sum_probs=65.9

Q ss_pred             cccCCCCEEEEEeC-C--CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe-CCC--cEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSY-D--GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDK--TTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d--~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~--~i~~~d~~~~~~~~~~~   76 (131)
                      .|+|||+.++.... +  ..|.++++.+.....+..+.+......|+|+|+.++-.+ ..+  .|++.|+.+++......
T Consensus       239 ~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~  318 (419)
T PRK04043        239 DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF  318 (419)
T ss_pred             EECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence            48999987765433 3  357777877555555554444334568999998766544 333  57778887776533322


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCC---------CcEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTD---------QHIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d---------~~i~i~d~~~~~~  112 (131)
                      . ..  ....|+|+++ ++.....         ..|.+.|+.+++.
T Consensus       319 ~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        319 H-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             C-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence            1 11  1248999987 4433322         3688888877653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.30  E-value=0.00012  Score=47.89  Aligned_cols=106  Identities=12%  Similarity=0.265  Sum_probs=72.0

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC--CCceee--cc-----------cccccEEEEEEcCCCCEEEEEeC-CCcEEEEE
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD--GSLKST--LG-----------QHKGPIFALKWNKRGNYILSAGV-DKTTIIWD   65 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~--~~~~~~--~~-----------~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d   65 (131)
                      +.+|++++++++.. +|.|.++++.  +.....  ..           .-.....++.++|+++++++.+. ...|.+|+
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~  172 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD  172 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence            35789999999876 8899999986  322221  11           11245688999999998887754 56799999


Q ss_pred             CCCcc--ee--eeee-cCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCC
Q psy3840          66 AASGQ--CE--QQFS-FHSAPALDVDWQSNTS--FASCSTDQHIHVCKLH  108 (131)
Q Consensus        66 ~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~  108 (131)
                      +....  ..  ..+. ........+.|+|+++  +++...++.|.++++.
T Consensus       173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            87654  21  2222 2345678999999976  4666678889999987

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2314|consensus

Probab=98.29  E-value=1.9e-05  Score=53.48  Aligned_cols=105  Identities=17%  Similarity=0.319  Sum_probs=75.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCcc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGV-----------DKTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-----------d~~i~~~d~~~~~   70 (131)
                      .|||-|.+|++-...| |.+|--. ...+..+ .|+ .+..+.|||..++|++-+.           ...+.+||+++|.
T Consensus       217 ~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~  293 (698)
T KOG2314|consen  217 RWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL  293 (698)
T ss_pred             EecCCceEEEEEeccc-eeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence            3799999999987665 7888744 2222222 244 5789999999999998542           2468999999999


Q ss_pred             eeeeeecCC--CCeE-EEEEcCCCcEEEEeCCCcEEEEeCCCC
Q psy3840          71 CEQQFSFHS--APAL-DVDWQSNTSFASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        71 ~~~~~~~~~--~~v~-~~~~~~~~~~~~~~~d~~i~i~d~~~~  110 (131)
                      ..+.+....  ...+ -..|+.|+++++.-....|.||+..+.
T Consensus       294 lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf  336 (698)
T KOG2314|consen  294 LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSF  336 (698)
T ss_pred             hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCce
Confidence            888877632  2333 457999988666666678889887653

>KOG1912|consensus

Probab=98.28  E-value=3.8e-05  Score=54.12  Aligned_cols=116  Identities=13%  Similarity=0.205  Sum_probs=88.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC------------CEEEEEeCCCcEEEEECCCcc
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG------------NYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~------------~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      |+| +..||.|+. ..|.+-|.. -+.+..+..|...|..+.|.|..            -.+++++..|.|.+||...+.
T Consensus        23 w~~-~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s  100 (1062)
T KOG1912|consen   23 WSP-SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS  100 (1062)
T ss_pred             cCc-cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh
Confidence            454 456666664 357777754 67777888899999999998731            256778889999999999998


Q ss_pred             eeeeeecCCCCeEEEEEcC---CCc--EEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          71 CEQQFSFHSAPALDVDWQS---NTS--FASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        71 ~~~~~~~~~~~v~~~~~~~---~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      .+..+..+..++..++|-+   +.+  ++.-.....+.+|+..+|+.+..+..-..
T Consensus       101 ~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~  156 (1062)
T KOG1912|consen  101 VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE  156 (1062)
T ss_pred             hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence            8888888889999999965   343  45555667899999999999888764333

>KOG4497|consensus

Probab=98.22  E-value=4e-05  Score=49.06  Aligned_cols=99  Identities=12%  Similarity=0.211  Sum_probs=76.1

Q ss_pred             ccccCCCCEEEEEeC--CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           2 QSSRNNGSFLATGSY--DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         2 ~~~~~~~~~l~~~~~--d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      .+|++|..++++-.+  -+.+-+||++...+........+|....|+|....++.+.....+++|.+.-. .....+...
T Consensus       324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~-~~V~vP~~G  402 (447)
T KOG4497|consen  324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP-RVVGVPKKG  402 (447)
T ss_pred             eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc-eEEecCCCC
Confidence            478999999998654  23588999987766666667779999999998888888878888999997553 333344455


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCc
Q psy3840          80 APALDVDWQSNTS-FASCSTDQH  101 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~  101 (131)
                      ..|..+.|.-+|. ++..+.|..
T Consensus       403 F~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  403 FNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             ceeeeEEecCCCcEEEEEcCCce
Confidence            7899999988776 777777764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.22  E-value=7e-05  Score=46.10  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=73.9

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee-ecCCC----
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-SFHSA----   80 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~-~~~~~----   80 (131)
                      ++..+++++.++.+..||.. |+.+..... .+.+.... ...+..++.+..++.++.+|..+|+.+... .....    
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            56778888889999999984 776665543 22111111 224566677778889999999999988774 32211    


Q ss_pred             -CeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          81 -PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        81 -~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                       ......+. ++.++.+..++.+..+|+++|+.+..+....
T Consensus       113 ~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen  113 RSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             B--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence             11122222 3447777779999999999999988886543

...

>KOG1275|consensus

Probab=98.21  E-value=1.6e-05  Score=56.61  Aligned_cols=98  Identities=18%  Similarity=0.268  Sum_probs=76.3

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCcceeeee
Q psy3840           6 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGV---------DKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~---------d~~i~~~d~~~~~~~~~~   75 (131)
                      .+++.+.+|...|+|.+-|.+ .+.++++..|++.+..+  +-.|+.+++++.         |..+++||++..+.+..+
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            467889999999999999987 78889999999988765  456999998863         566889999998877776


Q ss_pred             ecCCCCeEEEEEcCC--CcEEEEeCCCcEEEEe
Q psy3840          76 SFHSAPALDVDWQSN--TSFASCSTDQHIHVCK  106 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~--~~~~~~~~d~~i~i~d  106 (131)
                      +.+.++ .-+.|+|.  .+++.++..|...+-|
T Consensus       263 ~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  263 QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             ccccCc-hhhhhcccccceEEEEecccceeecc
Confidence            655444 44667775  3477777777777777

>KOG3617|consensus

Probab=98.20  E-value=8.4e-06  Score=57.93  Aligned_cols=107  Identities=13%  Similarity=0.251  Sum_probs=82.7

Q ss_pred             CccccCCCCEEEEEeC----CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           1 MQSSRNNGSFLATGSY----DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         1 ~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      |.+|+|...++++++-    .|.|.||--.|++-... ..+-.+.+++|+|..-.+++|-..|.+.+|...+.+.-....
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            4579999999998864    56788886555543221 122235679999998889999899999999987776555555


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                      .|..++..+.|+++|. ++++..-|.+.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            6888999999999977 8898888999999875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.19  E-value=7.9e-05  Score=54.50  Aligned_cols=107  Identities=21%  Similarity=0.416  Sum_probs=74.1

Q ss_pred             cccCCCCEEEEEeC---C---CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcceee
Q psy3840           3 SSRNNGSFLATGSY---D---GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQ   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---d---~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~~~~   73 (131)
                      +|..||+++|+.+-   .   ..+++|+-+|....+...-.+--.+++|.|.|+++++.-.   ...|.+|. ++|-.-.
T Consensus       216 SWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhg  294 (928)
T PF04762_consen  216 SWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHG  294 (928)
T ss_pred             EECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEee
Confidence            47889999999874   3   4699999887665555544455568899999999998765   23455555 4554433


Q ss_pred             eee----cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          74 QFS----FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        74 ~~~----~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      .+.    .....+..+.|++++. |+..- ...|++|-..+..
T Consensus       295 eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~vqLWt~~NYH  336 (928)
T PF04762_consen  295 EFTLRFDPEEEKVIELAWNSDSEILAVWL-EDRVQLWTRSNYH  336 (928)
T ss_pred             eEecCCCCCCceeeEEEECCCCCEEEEEe-cCCceEEEeeCCE
Confidence            332    2345789999999988 55444 4449999877654

>KOG2315|consensus

Probab=98.19  E-value=9.8e-05  Score=49.99  Aligned_cols=96  Identities=14%  Similarity=0.235  Sum_probs=68.4

Q ss_pred             eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEE--EeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEE
Q psy3840          19 YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILS--AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FAS   95 (131)
Q Consensus        19 ~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s--~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~   95 (131)
                      ++++.+++|.....-....++|.++.|+|+++-+++  |-.--.+.+||++ ++.+..+.  .++-+++-|+|.|+ ++.
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~l  328 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILL  328 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEE
Confidence            466666664444433445789999999999987665  4456788899975 44454444  45668899999988 555


Q ss_pred             EeC---CCcEEEEeCCCCeeeEEEe
Q psy3840          96 CST---DQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        96 ~~~---d~~i~i~d~~~~~~~~~~~  117 (131)
                      ++-   .|.+-|||..+.+++..+.
T Consensus       329 AGFGNL~G~mEvwDv~n~K~i~~~~  353 (566)
T KOG2315|consen  329 AGFGNLPGDMEVWDVPNRKLIAKFK  353 (566)
T ss_pred             eecCCCCCceEEEeccchhhccccc
Confidence            554   4689999999887777664

>KOG2444|consensus

Probab=98.13  E-value=2.9e-05  Score=47.10  Aligned_cols=103  Identities=11%  Similarity=0.060  Sum_probs=68.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEc-CCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-CCe
Q psy3840           7 NGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWN-KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APA   82 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~-~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~v   82 (131)
                      -+..+++|+.+|.|.+|+..  +........-...+.++.-. .++.+..++..++.|+.|+...++.+.....|. .+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            35788999999999998865  44433333333444444322 255688899999999999999888877766666 344


Q ss_pred             EEEEEcCC-CcEEEE--eCCCcEEEEeCCC
Q psy3840          83 LDVDWQSN-TSFASC--STDQHIHVCKLHS  109 (131)
Q Consensus        83 ~~~~~~~~-~~~~~~--~~d~~i~i~d~~~  109 (131)
                      ........ ..+...  +.|..++.|++..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhh
Confidence            43333333 335555  6777788887754

>KOG2079|consensus

Probab=98.12  E-value=2.5e-05  Score=56.51  Aligned_cols=94  Identities=20%  Similarity=0.306  Sum_probs=69.6

Q ss_pred             CCEEEEEeCCCeEEEEcCCCCce--eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           8 GSFLATGSYDGYARIWTSDGSLK--STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      +..++.|+..|.+-..|..+..-  ..=..-.++|++++|+.+|+.++.|-.+|.|.+||...++....+..+..+...+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            34577788888888877665432  2222345799999999999999999999999999999999888887766665544


Q ss_pred             E---EcCCCc-EEEEeCCCc
Q psy3840          86 D---WQSNTS-FASCSTDQH  101 (131)
Q Consensus        86 ~---~~~~~~-~~~~~~d~~  101 (131)
                      -   +..++. ++++...|.
T Consensus       179 i~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc
Confidence            3   344444 777777776

>KOG0309|consensus

Probab=98.12  E-value=7.1e-06  Score=57.35  Aligned_cols=104  Identities=18%  Similarity=0.308  Sum_probs=78.9

Q ss_pred             CCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-ceeeeeecCCCCeE
Q psy3840           7 NGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPAL   83 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-~~~~~~~~~~~~v~   83 (131)
                      ....+++++.|..++.||+.  ..++............++|+-....++..+..+.+.+||.+.+ .++..++++...+.
T Consensus       126 ~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn  205 (1081)
T KOG0309|consen  126 HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN  205 (1081)
T ss_pred             CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee
Confidence            45688999999999999987  4445555555556688899985555555556678999999975 45667777777888


Q ss_pred             EEEEcCC--CcEEEEeCCCcEEEEeCCCC
Q psy3840          84 DVDWQSN--TSFASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        84 ~~~~~~~--~~~~~~~~d~~i~i~d~~~~  110 (131)
                      .+.|..-  +.+.+++.|++|+.||....
T Consensus       206 ~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  206 SIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             hHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            8888664  45889999999999997643

>smart00320 WD40 WD40 repeats

Probab=98.11  E-value=1.9e-05  Score=33.52  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEe
Q psy3840          71 CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCK  106 (131)
Q Consensus        71 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d  106 (131)
                      ....+..+...+.++.|.+++. +++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4455666778899999998765 88999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.10  E-value=0.00027  Score=38.38  Aligned_cols=89  Identities=12%  Similarity=0.087  Sum_probs=59.6

Q ss_pred             CEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEc
Q psy3840           9 SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ   88 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~   88 (131)
                      +.|++|+.|..|++|+-. ..+.+... .+.+.++.-... ..++.+..+|+|-+|+-  ...+...+... .+.++++.
T Consensus        16 ~eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~-~~~~~~~~   89 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKN-QVTSMAFY   89 (111)
T ss_pred             ceEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCC-CeEEEEEE
Confidence            789999999999999853 33333333 346677665544 67899999999999975  33344455433 35555543


Q ss_pred             -C--CCc--EEEEeCCCcEE
Q psy3840          89 -S--NTS--FASCSTDQHIH  103 (131)
Q Consensus        89 -~--~~~--~~~~~~d~~i~  103 (131)
                       .  ++.  |++|-.+|.|-
T Consensus        90 D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   90 DINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cCCCCCceEEEEEecCCeEE
Confidence             3  333  88888888764

>KOG2066|consensus

Probab=98.09  E-value=6.7e-05  Score=52.84  Aligned_cols=91  Identities=20%  Similarity=0.292  Sum_probs=71.2

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD   86 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~   86 (131)
                      .+..++-|+.+|.|++++..+.+ .+...|...      ..+|.++++++.||++.+.-+-+.+....+.- ..++.+++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksia  119 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIA  119 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEE
Confidence            46889999999999999988776 444445433      56899999999999999998888777665553 46889999


Q ss_pred             EcCC------CcEEEEeCCCcEEEEe
Q psy3840          87 WQSN------TSFASCSTDQHIHVCK  106 (131)
Q Consensus        87 ~~~~------~~~~~~~~d~~i~i~d  106 (131)
                      ++|+      +++++|+..| +.++.
T Consensus       120 l~Pd~~~~~sk~fv~GG~ag-lvL~e  144 (846)
T KOG2066|consen  120 LHPDFSRQQSKQFVSGGMAG-LVLSE  144 (846)
T ss_pred             eccchhhhhhhheeecCcce-EEEeh
Confidence            9997      2388888877 66654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.06  E-value=0.00073  Score=42.06  Aligned_cols=122  Identities=14%  Similarity=0.111  Sum_probs=74.4

Q ss_pred             ccCCCCEEEEEeCC--------CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcce---
Q psy3840           4 SRNNGSFLATGSYD--------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQC---   71 (131)
Q Consensus         4 ~~~~~~~l~~~~~d--------~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~---   71 (131)
                      +.++|++.++....        |.|..++..++ +......-.....++|+|+++.++ +-+..+.|..+++.....   
T Consensus        93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~  171 (246)
T PF08450_consen   93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS  171 (246)
T ss_dssp             E-TTS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred             EcCCCCEEEEecCCCccccccccceEEECCCCe-EEEEecCcccccceEECCcchheeecccccceeEEEecccccccee
Confidence            46777766665443        34555565533 333333345568899999998765 555678888888853221   


Q ss_pred             -eeee---ecCCCCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEecc-cceEEEEe
Q psy3840          72 -EQQF---SFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGH-TRVYYLAM  127 (131)
Q Consensus        72 -~~~~---~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~  127 (131)
                       ...+   .......-.+++..++.+ ++.-..+.|.++|.+ |+.+..+... ..+.++++
T Consensus       172 ~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  172 NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence             1122   222223678999999884 555567899999988 8888877655 44445444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.03  E-value=0.00029  Score=49.07  Aligned_cols=104  Identities=12%  Similarity=0.151  Sum_probs=73.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-----CceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcce-----
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQC-----   71 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~-----   71 (131)
                      .+.++|++...+  ++.|.+.|...     ..+.....-......+.++|||++++.++. +.++.+.|+.+.+.     
T Consensus       283 a~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        283 EAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             HhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            345677766663  56799999764     333333334456688999999999887766 89999999987542     


Q ss_pred             -------eeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          72 -------EQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        72 -------~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                             ...... .......+|.++|. +.+.--|..|..||+.+
T Consensus       361 ~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                   222222 23445678888877 67777899999999875

>KOG4190|consensus

Probab=98.02  E-value=4.1e-06  Score=56.89  Aligned_cols=84  Identities=21%  Similarity=0.334  Sum_probs=65.4

Q ss_pred             eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------cceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcE
Q psy3840          30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-------GQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHI  102 (131)
Q Consensus        30 ~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i  102 (131)
                      +..+.+|+..|+.+.--.+.+.+++++.|.++++|.++.       ..+..+++.|+.++.++-|-.+.+.+ .+.|+.|
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i-~ScD~gi  806 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI-ASCDGGI  806 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee-eeccCcc
Confidence            345678999998887777888899999999999999874       23556778899999999998876522 3457889


Q ss_pred             EEEeCCCCeeeE
Q psy3840         103 HVCKLHSDKPVK  114 (131)
Q Consensus       103 ~i~d~~~~~~~~  114 (131)
                      ++||.--++++.
T Consensus       807 HlWDPFigr~La  818 (1034)
T KOG4190|consen  807 HLWDPFIGRLLA  818 (1034)
T ss_pred             eeecccccchhH
Confidence            999976665554

>KOG1832|consensus

Probab=97.96  E-value=6.3e-06  Score=58.82  Aligned_cols=110  Identities=18%  Similarity=0.343  Sum_probs=82.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCC--cEEEEECCC-cceeeeeecC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK--TTIIWDAAS-GQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~--~i~~~d~~~-~~~~~~~~~~   78 (131)
                      +|+.+.+.|++|+..|.|++|++. |........|..+++.+.-+.+|..+++.+.-.  -..+|++.+ +....++   
T Consensus      1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf--- 1184 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF--- 1184 (1516)
T ss_pred             EeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc---
Confidence            577888999999999999999987 777778889999999998888888777665543  355899865 3333333   


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                       ....++.|+...+ -+.|+......+||+.++.++.++
T Consensus      1185 -~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1185 -DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred             -cccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence             2446778877644 455556667899999998777663

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.96  E-value=0.002  Score=43.54  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=77.8

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC-cEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK-TTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      +|++++..+. |...+.+........ .++.+.|.-..+..+++.++.|..|| .+-++|.++++.. .+...-+.|.++
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av  407 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAV  407 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEE
Confidence            6888888874 566666655333322 24666788888888888999999998 8899999888754 344456789999


Q ss_pred             EEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          86 DWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        86 ~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      ..+++|+ ++.+....++.+.|+.++.
T Consensus       408 ~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         408 KVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             EEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            9999998 6777777789999998874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.94  E-value=0.0016  Score=41.79  Aligned_cols=115  Identities=13%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             cccCCCCEEEEEeC-----CCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEe------------------C
Q psy3840           3 SSRNNGSFLATGSY-----DGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAG------------------V   57 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-----d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~------------------~   57 (131)
                      .|++||++|++.-+     .|.|-+||..  ...+.++..|.-.-..+.+.|+++.++.+.                  .
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM  136 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM  136 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence            58999999988633     4579999987  455566666655556777888886666541                  2


Q ss_pred             CCcEEEEECCCcceeeeee----------------------------------------------------------cCC
Q psy3840          58 DKTTIIWDAASGQCEQQFS----------------------------------------------------------FHS   79 (131)
Q Consensus        58 d~~i~~~d~~~~~~~~~~~----------------------------------------------------------~~~   79 (131)
                      +.++.+.|..+|+.+....                                                          .-.
T Consensus       137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~  216 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLN  216 (305)
T ss_pred             CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhC
Confidence            3344445555554332210                                                          002


Q ss_pred             CCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          80 APALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .-+-+|++++++. + +++-..+.+.+||..+++.+....
T Consensus       217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence            3466788888865 4 555566789999999888776553

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.91  E-value=0.00055  Score=49.17  Aligned_cols=99  Identities=10%  Similarity=0.096  Sum_probs=70.1

Q ss_pred             CCEEEEEeCCCeEEEEcCC--CCceeeccc----ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           8 GSFLATGSYDGYARIWTSD--GSLKSTLGQ----HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~--~~~~~~~~~----~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .+..+.|-.+..+.-||..  +..+.....    ......|++-..+| +++.|+.+|.|++||-...+....+++-..+
T Consensus       542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~p  620 (794)
T PF08553_consen  542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDP  620 (794)
T ss_pred             CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCC
Confidence            3456677778889999976  322221112    23456777655444 6899999999999994333333456677889


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKL  107 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~  107 (131)
                      |..+..+.||+.+.+..+..+.+++.
T Consensus       621 I~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  621 IIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             eeEEEecCCCcEEEEeecceEEEEEE
Confidence            99999999999777777888888885

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.90  E-value=0.0015  Score=40.20  Aligned_cols=106  Identities=16%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeeccccccc----------EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGP----------IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~----------i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      +++.++++..++.|..+|.. |+.+.........          +..-....++ .++.++.++.+..+|+.+++.+...
T Consensus       121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~  199 (238)
T PF13360_consen  121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK  199 (238)
T ss_dssp             ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE
T ss_pred             ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe
Confidence            36788888889999999977 7776655443311          1122222244 6677777775443499999866433


Q ss_pred             ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEE
Q psy3840          76 SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  115 (131)
                      .  ...........++.++.++.++.+..||+++++.+.+
T Consensus       200 ~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  200 P--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             C--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             c--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            3  2233332233345577777899999999999988754

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.0021  Score=41.65  Aligned_cols=106  Identities=8%  Similarity=0.099  Sum_probs=71.3

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCCC--Cceeeccc---------ccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC-
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSDG--SLKSTLGQ---------HKGPIFALKWNKRGNYILSAGV-DKTTIIWDAAS-   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~~--~~~~~~~~---------~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~-   68 (131)
                      .|+|++++....+. +++|.+|..+.  .....++.         .......+..+|+|+++.++.. ...|.+|.+.. 
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            58999999988887 88999998762  23332222         2345677889999999988876 55788887654 


Q ss_pred             -cce--eeeeecCCCCeEEEEEcCCCc-EEEEeCC-CcEEEEeCC
Q psy3840          69 -GQC--EQQFSFHSAPALDVDWQSNTS-FASCSTD-QHIHVCKLH  108 (131)
Q Consensus        69 -~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-~~i~i~d~~  108 (131)
                       ++.  +.....+........+++.++ |+++..+ ..|.+|...
T Consensus       277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence             322  122233444467888999887 5555544 468888654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.89  E-value=0.00011  Score=33.75  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=29.8

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce
Q psy3840          37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC   71 (131)
Q Consensus        37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~   71 (131)
                      ...|.+++|+|...+++.+..+|.+.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456899999999999999999999999998 5543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.00065  Score=45.76  Aligned_cols=109  Identities=20%  Similarity=0.246  Sum_probs=66.2

Q ss_pred             ccccCCCCEEEEEeC-CCe--EEEEcCCCCceeecccccccEEEEEEcCCCCEEEEE-eCCCc--EEEEECCCcceeeee
Q psy3840           2 QSSRNNGSFLATGSY-DGY--ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKT--TIIWDAASGQCEQQF   75 (131)
Q Consensus         2 ~~~~~~~~~l~~~~~-d~~--i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~-~~d~~--i~~~d~~~~~~~~~~   75 (131)
                      ..|+|||++|+.... ||.  |.++|+.++....+....+.-..-.|+|+|++++-. +..|.  |.+.+++.+.. ..+
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~ri  321 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRL  321 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEe
Confidence            468999998877654 665  555677765555554444444466799999987754 44555  55556555543 333


Q ss_pred             ecCCCCeEEEEEcCCCc-EEEEeC-CCc--EEEEeCCCCe
Q psy3840          76 SFHSAPALDVDWQSNTS-FASCST-DQH--IHVCKLHSDK  111 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~-~~~~~~-d~~--i~i~d~~~~~  111 (131)
                      ......-..-.|+|++. ++..+. ++.  |.+.|+.++.
T Consensus       322 T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         322 TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            33333333677899987 544442 344  6677766554

>KOG1912|consensus

Probab=97.86  E-value=0.00031  Score=49.80  Aligned_cols=100  Identities=13%  Similarity=0.242  Sum_probs=75.9

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC---CC-CEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK---RG-NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~---~~-~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      .-+||++...|.|.+||.. +..+..+..|..++..++|-+   +. ..++.-....++.+|+..+|+.+..+.......
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL  158 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL  158 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence            3467788889999999986 666677788888999999876   33 356666778899999999999988877665666


Q ss_pred             EEEEEcC-CCc-EEEEeCCCcEEEEeC
Q psy3840          83 LDVDWQS-NTS-FASCSTDQHIHVCKL  107 (131)
Q Consensus        83 ~~~~~~~-~~~-~~~~~~d~~i~i~d~  107 (131)
                      .++.+.| +.+ +..-+..|.+.+.+.
T Consensus       159 s~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCceEEEEec
Confidence            7788888 333 655566677766654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.84  E-value=0.00013  Score=49.10  Aligned_cols=102  Identities=15%  Similarity=0.281  Sum_probs=72.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCc---------------EEEEEC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT---------------TIIWDA   66 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~---------------i~~~d~   66 (131)
                      .+||.|.+|++.... -|.+|... ...+..+. | ..|..+.|+|.+++|.+-+..+.               +.+||+
T Consensus        39 ~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~  115 (561)
T COG5354          39 SESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI  115 (561)
T ss_pred             eecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEec
Confidence            478999999987654 48888865 22222222 3 46889999999999998765444               899999


Q ss_pred             CCcceeeeeecCCCC--eE-EEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840          67 ASGQCEQQFSFHSAP--AL-DVDWQSNTSFASCSTDQHIHVCKL  107 (131)
Q Consensus        67 ~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~d~~i~i~d~  107 (131)
                      .++..+..+.....+  .+ -+.|+-+..+++---...++|+++
T Consensus       116 ~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~  159 (561)
T COG5354         116 ASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI  159 (561)
T ss_pred             cCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec
Confidence            999999888776555  44 677877765433334457888885

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.84  E-value=0.0014  Score=43.78  Aligned_cols=106  Identities=11%  Similarity=0.006  Sum_probs=69.5

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-eEEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDV   85 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~   85 (131)
                      +..++.++.++.+..+|.. |+.+...... . ...+.  ..+..++.++.++.+..+|..+++.+......... ..+.
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp  331 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYG-S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP  331 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCC-C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence            4567777788899888876 6555443211 1 11111  24667777888999999999999876543321111 1111


Q ss_pred             EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .. .++.++.++.+|.++..|.++|+.+.+.+.
T Consensus       332 ~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        332 VL-YNGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             EE-ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            11 256788889999999999999998877654

>KOG0882|consensus

Probab=97.83  E-value=0.00023  Score=47.38  Aligned_cols=108  Identities=13%  Similarity=0.248  Sum_probs=79.9

Q ss_pred             EEEEEe-CCCeEEEEcCCCC--ce-eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC------cceeee-----
Q psy3840          10 FLATGS-YDGYARIWTSDGS--LK-STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS------GQCEQQ-----   74 (131)
Q Consensus        10 ~l~~~~-~d~~i~~~~~~~~--~~-~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~------~~~~~~-----   74 (131)
                      .++++. .++.+.++|-.+.  +. ..-.-|..+|.++.+.+-+..+++....|.|..|....      .+....     
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT  192 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET  192 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence            444443 3788999996522  22 33345889999999999999999999999999999873      111111     


Q ss_pred             ----eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          75 ----FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        75 ----~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                          +........++.++|++. +.+-+.|..|++++.++++.++.+.
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence                222345678899999976 8888899999999999998777664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.83  E-value=0.00021  Score=45.68  Aligned_cols=106  Identities=20%  Similarity=0.316  Sum_probs=70.3

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC------CCceeeccccc------------ccEEEEEEcCCC--CEEEEEeCCCcEEE
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD------GSLKSTLGQHK------------GPIFALKWNKRG--NYILSAGVDKTTII   63 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~------~~~~~~~~~~~------------~~i~~~~~~~~~--~~~~s~~~d~~i~~   63 (131)
                      |...|.++++|...|.|-+|.-+      .+....+++|.            .+|..+.|..++  ..++..+.|.+|++
T Consensus        34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl  113 (460)
T COG5170          34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL  113 (460)
T ss_pred             eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence            55678999999999999998644      22233445543            456777776533  45777778999999


Q ss_pred             EECCCcce--e----------------------------------------eee-ecCCCCeEEEEEcCCCcEEEEeCCC
Q psy3840          64 WDAASGQC--E----------------------------------------QQF-SFHSAPALDVDWQSNTSFASCSTDQ  100 (131)
Q Consensus        64 ~d~~~~~~--~----------------------------------------~~~-~~~~~~v~~~~~~~~~~~~~~~~d~  100 (131)
                      |.+.+...  +                                        +.+ ..|...+.++.+..+...+....|-
T Consensus       114 WKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdL  193 (460)
T COG5170         114 WKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDL  193 (460)
T ss_pred             eeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccce
Confidence            98764310  0                                        000 1234457788888887655566778


Q ss_pred             cEEEEeCCC
Q psy3840         101 HIHVCKLHS  109 (131)
Q Consensus       101 ~i~i~d~~~  109 (131)
                      .|.+|++.-
T Consensus       194 rINLWnl~i  202 (460)
T COG5170         194 RINLWNLEI  202 (460)
T ss_pred             eeeeccccc
Confidence            899998864

>KOG4649|consensus

Probab=97.82  E-value=0.0024  Score=40.10  Aligned_cols=108  Identities=11%  Similarity=0.018  Sum_probs=74.7

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD   86 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~   86 (131)
                      ..+++.|+..+.+..-|.. |+...+.. -...+.+-+.- -+..++.|...|.+++.+..+|.....+.....-=....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            4677788888888888876 55544322 22334332222 477799999999999999999987777664322112233


Q ss_pred             EcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          87 WQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        87 ~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..+++. +..+++|+..+..|.++..++.+.+
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            455655 8899999999999999988887654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.81  E-value=0.00085  Score=44.73  Aligned_cols=110  Identities=10%  Similarity=0.007  Sum_probs=72.1

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccc--cEE-----EEEEcC--CCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKG--PIF-----ALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~--~i~-----~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      .+..+++++.++.+.-+|.. |+.+........  ...     .+.-.|  .+..++.++.++.++.+|.++|+.+....
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            45677888888899989976 776665432210  000     000112  35567778889999999999999887765


Q ss_pred             cCCCCeEE-EEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          77 FHSAPALD-VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        77 ~~~~~v~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ... .+.+ ... .++.++.+..++.++-+|.++|+.+..+..
T Consensus       148 ~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        148 VAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             CCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            432 2211 111 156677778889999999999998877653

>KOG1275|consensus

Probab=97.81  E-value=0.00019  Score=51.56  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=74.9

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      ++..++.|+-...+..+|+.+........ ..+.+.-|  ..+++.+.+|...|+|.+-|+++.+.+.++..|.+.+.++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            45667777666667777877444333222 22234444  4478899999999999999999999999999999999887


Q ss_pred             EEcCCCcEEEEeC---------CCcEEEEeCCCCeeeEE
Q psy3840          86 DWQSNTSFASCST---------DQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        86 ~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~  115 (131)
                      ....+ .|++++.         |.-|+|||+|+.+.+.-
T Consensus       224 Dv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~P  261 (1118)
T KOG1275|consen  224 DVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP  261 (1118)
T ss_pred             eccCC-eEEEeecccccccccccchhhhhhhhhhhccCC
Confidence            66432 3666653         55688999998665543

>KOG2114|consensus

Probab=97.77  E-value=0.00037  Score=49.71  Aligned_cols=106  Identities=20%  Similarity=0.271  Sum_probs=72.9

Q ss_pred             CccccCCCCEEEEEeCCCeEEEEcCCCCceeeccccccc-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCc-----
Q psy3840           1 MQSSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP-IFALKWNKRGNYILSAGVDK-----TTIIWDAASG-----   69 (131)
Q Consensus         1 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~s~~~d~-----~i~~~d~~~~-----   69 (131)
                      ++.+++.+..++.|+.+|.|.+.+-..+....++.+... +..+-...+...+++.+.|+     .+++|+++.-     
T Consensus        28 isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   28 ISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            356889999999999999999998766666667776665 44444444556777766544     4889998642     


Q ss_pred             -cee---eeee----cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEe
Q psy3840          70 -QCE---QQFS----FHSAPALDVDWQSNTS-FASCSTDQHIHVCK  106 (131)
Q Consensus        70 -~~~---~~~~----~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d  106 (131)
                       .++   +.+.    ....++.+++.+.+-+ ++.|-.+|.|..+.
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence             122   1111    1245678888888754 78888889888774

>KOG4649|consensus

Probab=97.77  E-value=0.0019  Score=40.53  Aligned_cols=95  Identities=15%  Similarity=0.128  Sum_probs=65.1

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD   86 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~   86 (131)
                      |++++.|+..|.+++.+.+ |.....+...+..-......+++..+..++.|+..+..|.++..++...+.......+-+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~  142 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV  142 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence            6788999999999988877 656666554433222335578999999999999999999999888877664433333444


Q ss_pred             EcC-CCcEEEEeCCCcE
Q psy3840          87 WQS-NTSFASCSTDQHI  102 (131)
Q Consensus        87 ~~~-~~~~~~~~~d~~i  102 (131)
                      ..| ++.+..+...|.+
T Consensus       143 i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen  143 IAPGDGSLYAAITAGAV  159 (354)
T ss_pred             ecCCCceEEEEeccceE
Confidence            455 3445444444443

>KOG1645|consensus

Probab=97.75  E-value=0.00029  Score=46.26  Aligned_cols=67  Identities=13%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             cccCCCC-EEEEEeCCCeEEEEcCCCC-ceeecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCcc
Q psy3840           3 SSRNNGS-FLATGSYDGYARIWTSDGS-LKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~~~~~-~l~~~~~d~~i~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      +|+|..+ ++..++.+..|++.|++.. .+..+..+ ..+++++|+.+ .+.+..|...|.|.+||++..+
T Consensus       200 afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  200 AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            5788777 6778888999999999844 44445555 78999999985 5577788889999999998643

>KOG2314|consensus

Probab=97.65  E-value=0.00033  Score=47.86  Aligned_cols=77  Identities=17%  Similarity=0.327  Sum_probs=58.6

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeC-----------CCcEEEEe
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCST-----------DQHIHVCK  106 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-----------d~~i~i~d  106 (131)
                      .-+-+.|||.|.++++-...| |.+|--.+-..++.+.  +..+.-+.|+|..+ |++-+.           ...+.|||
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            346789999999999987776 7789887766666665  24678889999866 666432           24799999


Q ss_pred             CCCCeeeEEEec
Q psy3840         107 LHSDKPVKSFEG  118 (131)
Q Consensus       107 ~~~~~~~~~~~~  118 (131)
                      +++|...+.+..
T Consensus       289 I~tG~lkrsF~~  300 (698)
T KOG2314|consen  289 IATGLLKRSFPV  300 (698)
T ss_pred             ccccchhcceec
Confidence            999988777654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.64  E-value=0.0034  Score=46.39  Aligned_cols=104  Identities=14%  Similarity=0.305  Sum_probs=69.1

Q ss_pred             cccCCCCEEEEEeC---CCeEEEEcCCCCc----eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc--eee
Q psy3840           3 SSRNNGSFLATGSY---DGYARIWTSDGSL----KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--CEQ   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---d~~i~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~--~~~   73 (131)
                      +|.|+|++||+...   ...|.+|.-+|-.    ...+......+..+.|++++..++..-.|. |.+|...+-.  ..+
T Consensus       263 ~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq  341 (928)
T PF04762_consen  263 SWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ  341 (928)
T ss_pred             cCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence            68999999999865   3457778766432    222234556899999999999999977655 9999987632  222


Q ss_pred             eeec-CCCCeEEEEEcCCC--cEEEEeCCCcEEEEeC
Q psy3840          74 QFSF-HSAPALDVDWQSNT--SFASCSTDQHIHVCKL  107 (131)
Q Consensus        74 ~~~~-~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d~  107 (131)
                      .+.. ....+..+.|+|+.  ++.....++.+..++.
T Consensus       342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            2322 22344559999973  3666666666655543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.63  E-value=0.0018  Score=43.89  Aligned_cols=102  Identities=18%  Similarity=0.212  Sum_probs=70.9

Q ss_pred             cccCCCCEEEEEe--CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcceee-eee
Q psy3840           3 SSRNNGSFLATGS--YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQ-QFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~~~~-~~~   76 (131)
                      .|.|.++.+++.+  ..-.+.++|+.+.....+.  +.+-..+.|+|.+++++.++-   .|.+-+||......+. .+.
T Consensus       281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~  358 (561)
T COG5354         281 TWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN  358 (561)
T ss_pred             eecccCCceeEEecccccceeecccccceEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee
Confidence            4778888777655  4667889999887544333  334466789999999998765   4779999987765544 444


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEe------CCCcEEEEeCC
Q psy3840          77 FHSAPALDVDWQSNTS-FASCS------TDQHIHVCKLH  108 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~------~d~~i~i~d~~  108 (131)
                      +  ....-+.|+|+++ +.+..      .|..+.+||+.
T Consensus       359 ~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         359 G--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             c--CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            3  2345567999988 33332      36789999985

>KOG1920|consensus

Probab=97.60  E-value=0.0023  Score=47.55  Aligned_cols=108  Identities=19%  Similarity=0.386  Sum_probs=70.9

Q ss_pred             cccCCCCEEEE-----EeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe---CCCcEEEEECC---Ccce
Q psy3840           3 SSRNNGSFLAT-----GSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG---VDKTTIIWDAA---SGQC   71 (131)
Q Consensus         3 ~~~~~~~~l~~-----~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~---~d~~i~~~d~~---~~~~   71 (131)
                      +|.-||+++++     ......+++||-+|..-..-....+--.+++|-|.|.++++-.   .|+.|.+|.-+   .+..
T Consensus       202 sWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f  281 (1265)
T KOG1920|consen  202 SWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF  281 (1265)
T ss_pred             EEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc
Confidence            36678899988     3333689999987544443334444456889999999988753   35578888733   2333


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEE---EeCCCcEEEEeCCCC
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FAS---CSTDQHIHVCKLHSD  110 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~---~~~d~~i~i~d~~~~  110 (131)
                      ...++....++..++|+.++. |+.   ......|++|-+.+.
T Consensus       282 ~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  282 VLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            333444445589999998876 444   344455999987664

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.50  E-value=0.01  Score=41.84  Aligned_cols=52  Identities=8%  Similarity=0.060  Sum_probs=36.9

Q ss_pred             CcEEEEECCC-----cceeeeeecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCe
Q psy3840          59 KTTIIWDAAS-----GQCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        59 ~~i~~~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~  111 (131)
                      +.+.+.|.++     .+.+..+.. ......+.++||++  ++++..+..+.|.|+.+.+
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            4577777776     334444443 45678899999988  4666678999999998754

>KOG1008|consensus

Probab=97.50  E-value=2.7e-05  Score=53.69  Aligned_cols=104  Identities=24%  Similarity=0.302  Sum_probs=73.9

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcC-CCCEEEEEe----CCCcEEEEECCCc--cee--
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNK-RGNYILSAG----VDKTTIIWDAASG--QCE--   72 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~----~d~~i~~~d~~~~--~~~--   72 (131)
                      ..+..++++|..+|.|-+-...   ........++..++++++|++ |.+.++.|-    .|..+.+||+.++  .+.  
T Consensus        67 ~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~  146 (783)
T KOG1008|consen   67 GNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES  146 (783)
T ss_pred             CCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc
Confidence            3445788999999999988765   222344566788999999999 667777663    3678999999876  221  


Q ss_pred             eeeec-CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          73 QQFSF-HSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        73 ~~~~~-~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                      ..+.. ......+++|..+.+ +++|...+.++++|+|
T Consensus       147 ~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR  184 (783)
T KOG1008|consen  147 PLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR  184 (783)
T ss_pred             cccccccccCccccccccCcchhhcccccchhhhhhhh
Confidence            22222 233456788887766 6778888899999998

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.48  E-value=0.002  Score=42.45  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=60.6

Q ss_pred             cCCCCEEEEEe---------CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840           5 RNNGSFLATGS---------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         5 ~~~~~~l~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      |||+++++...         ..+.+.+||+..+....+......+....|+|+|+.++-.. ++.+.+.+..++...+.-
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT   79 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT   79 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence            57888888742         23457788888666555555567889999999999988774 567999988766433211


Q ss_pred             -ec-------C---------CCCeEEEEEcCCCc-EEEEe-CCCcEEEE
Q psy3840          76 -SF-------H---------SAPALDVDWQSNTS-FASCS-TDQHIHVC  105 (131)
Q Consensus        76 -~~-------~---------~~~v~~~~~~~~~~-~~~~~-~d~~i~i~  105 (131)
                       .+       -         -..-..+.|+|+++ |+... .+..+..+
T Consensus        80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred             cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence             11       0         12346788999987 54443 33344433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.40  E-value=0.0093  Score=40.17  Aligned_cols=83  Identities=10%  Similarity=0.073  Sum_probs=60.2

Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEE-EEE-cC---------------C-Cc-E-EE
Q psy3840          36 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDW-QS---------------N-TS-F-AS   95 (131)
Q Consensus        36 ~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~-~~~-~~---------------~-~~-~-~~   95 (131)
                      ....+.++..+|.+++.++.+.=|.|.++|+.++..++.+++.++.-.. +.. .+               . .. | +-
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            3446788999999999999888899999999999888887765443111 110 01               0 11 2 34


Q ss_pred             EeCCCcEEEEeCCCCeeeEEEec
Q psy3840          96 CSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        96 ~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      +...|.|-||+++.|..+..+..
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEEe
Confidence            56678999999999999888764

>KOG1008|consensus

Probab=97.39  E-value=7.9e-05  Score=51.51  Aligned_cols=104  Identities=16%  Similarity=0.162  Sum_probs=70.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEE-CCCcc-eeeeeecCC-
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWD-AASGQ-CEQQFSFHS-   79 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d-~~~~~-~~~~~~~~~-   79 (131)
                      |-.+.+.+.+|.....++++|+...........+..+..+..+| .+.++++-. |+.+.+|| .++-+ ++..+.... 
T Consensus       162 wlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N  240 (783)
T KOG1008|consen  162 WLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNEN  240 (783)
T ss_pred             cccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCC
Confidence            44567788888888889999887444333333444667778889 788877765 99999999 44432 223332222 


Q ss_pred             ---CCeEEEEEcCC--CcEEEEeCC-CcEEEEeCC
Q psy3840          80 ---APALDVDWQSN--TSFASCSTD-QHIHVCKLH  108 (131)
Q Consensus        80 ---~~v~~~~~~~~--~~~~~~~~d-~~i~i~d~~  108 (131)
                         ..+..++|+|.  |.+++...| ++|+.+|+.
T Consensus       241 ~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  241 KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence               35889999996  556666655 579999875

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.38  E-value=0.0011  Score=30.35  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      ..+|..+.|+|... ++.+..+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            35688999999965 899999999999998 45543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.37  E-value=0.0053  Score=41.73  Aligned_cols=108  Identities=14%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      +++|+|+.++++ .+|...+|....-...    ..+......|.+ ...+++-...++|.++.--+.+....+... ..+
T Consensus        39 s~npngr~v~V~-g~geY~iyt~~~~r~k----~~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~  111 (443)
T PF04053_consen   39 SHNPNGRFVLVC-GDGEYEIYTALAWRNK----AFGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSV  111 (443)
T ss_dssp             EE-TTSSEEEEE-ETTEEEEEETTTTEEE----EEEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----S-S-E
T ss_pred             EECCCCCEEEEE-cCCEEEEEEccCCccc----ccCceeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcCC-ccc
Confidence            478999999995 5788888874322211    123445667887 444666666888888632233322233321 233


Q ss_pred             EEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          83 LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        83 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      ..+..   |.++....++.|.+||+.+++.++.+....
T Consensus       112 ~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~  146 (443)
T PF04053_consen  112 EKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVSA  146 (443)
T ss_dssp             EEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-E
T ss_pred             ceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecCC
Confidence            33433   664444445579999999998888887543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2041|consensus

Probab=97.36  E-value=0.0013  Score=46.69  Aligned_cols=75  Identities=23%  Similarity=0.385  Sum_probs=60.3

Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc---------------eeeeeecCCCCeEEEEEcCCCc-EEEEeCC
Q psy3840          36 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ---------------CEQQFSFHSAPALDVDWQSNTS-FASCSTD   99 (131)
Q Consensus        36 ~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d   99 (131)
                      ......|+.|+.+..+++.|+.||.+++..+.+..               .-+++.+|...|..+.|+.+.+ +.+.+.+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34567899999999999999999999998775421               1134568899999999988765 8889999


Q ss_pred             CcEEEEeCCCC
Q psy3840         100 QHIHVCKLHSD  110 (131)
Q Consensus       100 ~~i~i~d~~~~  110 (131)
                      |-|.+|-+-.+
T Consensus        93 GlIiVWmlykg  103 (1189)
T KOG2041|consen   93 GLIIVWMLYKG  103 (1189)
T ss_pred             ceEEEEeeecc
Confidence            99999977544

>KOG2114|consensus

Probab=97.36  E-value=0.03  Score=40.68  Aligned_cols=118  Identities=14%  Similarity=0.224  Sum_probs=76.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-----CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-eeeeeec
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-----GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-CEQQFSF   77 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-~~~~~~~   77 (131)
                      .+.+-..+++|-.+|.|..+.-.     +....-.....++|+.+++..++..++-...-..|.+|.+.... ....+..
T Consensus       133 Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~  212 (933)
T KOG2114|consen  133 VSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN  212 (933)
T ss_pred             EEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc
Confidence            34556788999899999988533     33223333345799999998888773333344568888887433 2444666


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe-cccce
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE-GHTRV  122 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~  122 (131)
                      ++.+..|-.+++... ++++ .+..+.+|+.....+--.+. +|...
T Consensus       213 ~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  213 NGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             CCccceeeecCCCCccEEEe-cCceEEEEcCCCcceeeeecCCCeEE
Confidence            777888888877654 5554 44578999887555545554 55443

>KOG2079|consensus

Probab=97.28  E-value=0.00098  Score=48.87  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=59.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCccee-eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          48 RGNYILSAGVDKTTIIWDAASGQCE-QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        48 ~~~~~~s~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      .+..++.|+..|.+...|.+..-.. ..-..-.++|.+++|+.+|+ ++.|-.+|.|.+||...++.++.+..|..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            4556788888888988887654221 11112346899999999988 667778899999999999999998877776655


Q ss_pred             Ee
Q psy3840         126 AM  127 (131)
Q Consensus       126 ~~  127 (131)
                      ++
T Consensus       178 vi  179 (1206)
T KOG2079|consen  178 VI  179 (1206)
T ss_pred             EE
Confidence            54

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.28  E-value=0.011  Score=41.79  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=58.7

Q ss_pred             cccCCCCEEEEEeCC-CeEEEE-----------cCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEE---EECC
Q psy3840           3 SSRNNGSFLATGSYD-GYARIW-----------TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII---WDAA   67 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d-~~i~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~---~d~~   67 (131)
                      .|+|+|..+++..+. ..+++.           ++.+.....  ...+.|..+.|+|||..++... ++.+++   -...
T Consensus       403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~  479 (591)
T PRK13616        403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE  479 (591)
T ss_pred             eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence            588998888777533 122232           222211111  2345799999999999887665 467776   3433


Q ss_pred             Ccce-e---eeeec-CCCCeEEEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840          68 SGQC-E---QQFSF-HSAPALDVDWQSNTSFASCSTDQHIHVCKL  107 (131)
Q Consensus        68 ~~~~-~---~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~  107 (131)
                      .|+. +   ..+.. ....+.++.|.+++.|+.+..++...+|.+
T Consensus       480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v  524 (591)
T PRK13616        480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYV  524 (591)
T ss_pred             CCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEE
Confidence            4431 1   11222 223357899999988666655554445543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.26  E-value=0.017  Score=35.96  Aligned_cols=101  Identities=10%  Similarity=0.040  Sum_probs=60.5

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEc-CCCCEEEEEeCCCcEEEEECCCcceeeeeec----
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWN-KRGNYILSAGVDKTTIIWDAASGQCEQQFSF----   77 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~----   77 (131)
                      |.+ ++.++++-...+.|..|+..+..........  ...+++. +++ .++.+...+ +.++|+.+++.......    
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~   82 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGG   82 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTC
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCC
Confidence            555 6667777667889999998765554433222  5667777 564 445555544 45559888754333322    


Q ss_pred             -CCCCeEEEEEcCCCcE-EEEeCC--------CcEEEEeCC
Q psy3840          78 -HSAPALDVDWQSNTSF-ASCSTD--------QHIHVCKLH  108 (131)
Q Consensus        78 -~~~~v~~~~~~~~~~~-~~~~~d--------~~i~i~d~~  108 (131)
                       .....+.+++.|+|.+ ++....        +.++.++..
T Consensus        83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~  123 (246)
T PF08450_consen   83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD  123 (246)
T ss_dssp             SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred             cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence             2345788999999884 443322        456667766

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.23  E-value=0.014  Score=36.72  Aligned_cols=102  Identities=10%  Similarity=0.107  Sum_probs=57.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC----Cce--ee------cccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG----SLK--ST------LGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~----~~~--~~------~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~   69 (131)
                      +|++.++.|+++-......+|.+.+    ...  ..      .......+..+.++| .+++++....+..+..+| .+|
T Consensus       124 a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G  202 (248)
T PF06977_consen  124 AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQG  202 (248)
T ss_dssp             EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT-
T ss_pred             EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCC
Confidence            4677777887777666666665542    111  00      111334578899999 566777777788888899 667


Q ss_pred             ceeeeeecCC---------CCeEEEEEcCCCcEEEEeCCCcEEEE
Q psy3840          70 QCEQQFSFHS---------APALDVDWQSNTSFASCSTDQHIHVC  105 (131)
Q Consensus        70 ~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~d~~i~i~  105 (131)
                      +.+..+.-..         .+...|++.++|.+...+.-+..++|
T Consensus       203 ~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  203 RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             -EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            6655543221         35778999999887666666655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.23  E-value=0.0097  Score=32.47  Aligned_cols=64  Identities=14%  Similarity=0.119  Sum_probs=46.5

Q ss_pred             EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEe
Q psy3840          40 IFALKWNK---RG-NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCK  106 (131)
Q Consensus        40 i~~~~~~~---~~-~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d  106 (131)
                      |++|++..   +| +.++.|+.|..|++|+-.  +.+..+.. ...+..+.-...++++.+-.+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEe
Confidence            45666544   32 579999999999998743  45555554 4678888877777888888888877665

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.23  E-value=0.025  Score=37.05  Aligned_cols=115  Identities=14%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCceeeccc-------------ccccEEEEEEcCCCCEEEEE-e-------CCC--cEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKSTLGQ-------------HKGPIFALKWNKRGNYILSA-G-------VDK--TTII   63 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~s~-~-------~d~--~i~~   63 (131)
                      .+..++--+.+|.|+--++.+........             -.+.-.-+++++..+.++.. .       +++  .|-+
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            34445445678888877776433221111             11223456777744433332 1       222  3667


Q ss_pred             EECCCcceeeeeecCCCCeEEEEEcCCCc--EEE-EeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          64 WDAASGQCEQQFSFHSAPALDVDWQSNTS--FAS-CSTDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        64 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      +|+.+++.+..+... .++.++..+.+.+  |++ ...++.+.+||..+|+.++++..-...
T Consensus       274 ~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~  334 (342)
T PF06433_consen  274 YDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGET  334 (342)
T ss_dssp             EETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS
T ss_pred             EECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCC
Confidence            788999999888743 4677899888765  443 345789999999999999998754433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.21  E-value=0.0061  Score=41.26  Aligned_cols=108  Identities=12%  Similarity=0.117  Sum_probs=62.3

Q ss_pred             cccCCCCEEEEEeC---C-CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEE-EeCCCc--EEEEECCCcceeeee
Q psy3840           3 SSRNNGSFLATGSY---D-GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKT--TIIWDAASGQCEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---d-~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~--i~~~d~~~~~~~~~~   75 (131)
                      .|+|++..++.-.-   . ..+.+++++.......-...+.-..-+|+|+|+.++- ...|+.  |++.|+..+...+ +
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-L  277 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-L  277 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-c
Confidence            57788877655422   2 3477788773222222223333445689999987664 445665  6667877766433 4


Q ss_pred             ecCCCCeEEEEEcCCCc-E-EEEeCCCc--EEEEeCCCCe
Q psy3840          76 SFHSAPALDVDWQSNTS-F-ASCSTDQH--IHVCKLHSDK  111 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~-~-~~~~~d~~--i~i~d~~~~~  111 (131)
                      ....+.-..-.|+|+|+ + .+.+..|.  |.+.+...+.
T Consensus       278 t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         278 TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            43333334677899987 4 44555554  5666665443

>KOG1832|consensus

Probab=97.21  E-value=0.0007  Score=49.04  Aligned_cols=91  Identities=15%  Similarity=0.169  Sum_probs=71.2

Q ss_pred             CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc--EEEEeCCC-cEE
Q psy3840          27 GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCSTDQ-HIH  103 (131)
Q Consensus        27 ~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~-~i~  103 (131)
                      .+....+..|+...+|++|+-+.+.++.|+..|.++++++.+|.......+|..+++-+.-+-+|.  +.+++... -..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            355667778889999999999999999999999999999999999889999999998887776765  33333333 467


Q ss_pred             EEeCCC-CeeeEEEe
Q psy3840         104 VCKLHS-DKPVKSFE  117 (131)
Q Consensus       104 i~d~~~-~~~~~~~~  117 (131)
                      +|++.+ +.+..++.
T Consensus      1171 LW~~~s~~~~~Hsf~ 1185 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD 1185 (1516)
T ss_pred             HhccccccCcccccc
Confidence            898754 34445443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=97.18  E-value=0.0045  Score=27.68  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=26.3

Q ss_pred             ccEEEEEEcCCC---CEEEEEeCCCcEEEEECCCc
Q psy3840          38 GPIFALKWNKRG---NYILSAGVDKTTIIWDAASG   69 (131)
Q Consensus        38 ~~i~~~~~~~~~---~~~~s~~~d~~i~~~d~~~~   69 (131)
                      +.+.+++|+|++   .+++-+...+.+.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999844   48888888899999999853

It contains a characteristic DLL sequence motif.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.14  E-value=0.026  Score=35.76  Aligned_cols=102  Identities=12%  Similarity=0.082  Sum_probs=62.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC---CCceeec---ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD---GSLKSTL---GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~---~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      .+.+|+.||+- .|..|.+-..+   ...+.+.   +.-...=+.++|+||+..++.+...|+|++||+.... +..+..
T Consensus         5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p   82 (282)
T PF15492_consen    5 LSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPP   82 (282)
T ss_pred             ecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCc
Confidence            46678888775 67788877554   2222222   2222234788999999999999999999999986533 222221


Q ss_pred             -------CCCCeEEEEEcCC-------CcEEEEeCCCcEEEEeC
Q psy3840          78 -------HSAPALDVDWQSN-------TSFASCSTDQHIHVCKL  107 (131)
Q Consensus        78 -------~~~~v~~~~~~~~-------~~~~~~~~d~~i~i~d~  107 (131)
                             ....|..+.|.+.       ..++.-..+|.++=|-+
T Consensus        83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence                   1245666666432       12555566666665544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.09  E-value=0.041  Score=39.12  Aligned_cols=97  Identities=20%  Similarity=0.346  Sum_probs=63.9

Q ss_pred             EEEEEeC-CCeEEEEcCCCCceeecc--cccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCC------c---ceeeee
Q psy3840          10 FLATGSY-DGYARIWTSDGSLKSTLG--QHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAAS------G---QCEQQF   75 (131)
Q Consensus        10 ~l~~~~~-d~~i~~~~~~~~~~~~~~--~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~------~---~~~~~~   75 (131)
                      .++.... ...+.|||..+.....-.  ...+.|..+.|..  +++.+++.+-...|.++....      +   ..+..+
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            3444444 446999998854433222  3477899999854  888999999999999885421      1   122222


Q ss_pred             --ecCC-CCeEEEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840          76 --SFHS-APALDVDWQSNTSFASCSTDQHIHVCKL  107 (131)
Q Consensus        76 --~~~~-~~v~~~~~~~~~~~~~~~~d~~i~i~d~  107 (131)
                        ..++ .+|.+..|.++|.++.|+ ++.+.|+|-
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             EeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence              2233 578899999999876654 356778764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395|consensus

Probab=97.01  E-value=0.01  Score=40.80  Aligned_cols=97  Identities=8%  Similarity=0.090  Sum_probs=66.5

Q ss_pred             EEEEeCCCeEEEEcCC--CC-ceeeccccc----ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840          11 LATGSYDGYARIWTSD--GS-LKSTLGQHK----GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus        11 l~~~~~d~~i~~~~~~--~~-~~~~~~~~~----~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      -+.|-.+..|.=||..  +. .+....+|+    ....|.+-. ..-+++.|+.+|.|++||-........+++...+|.
T Consensus       397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK  475 (644)
T ss_pred             cEEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence            3456667778888865  33 222233332    234444433 445789999999999999743344455777888999


Q ss_pred             EEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840          84 DVDWQSNTSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        84 ~~~~~~~~~~~~~~~d~~i~i~d~~  108 (131)
                      .+..+.+|+.+.|+.+.++.+-++.
T Consensus       476 hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  476 HVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             eEEeeccCcEEEEecccEEEEEEEe
Confidence            9999999998778888888877764

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.98  E-value=0.027  Score=39.88  Aligned_cols=96  Identities=9%  Similarity=0.036  Sum_probs=54.9

Q ss_pred             cccCCCCEEEEEe------CCC--eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC------------CcEE
Q psy3840           3 SSRNNGSFLATGS------YDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD------------KTTI   62 (131)
Q Consensus         3 ~~~~~~~~l~~~~------~d~--~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d------------~~i~   62 (131)
                      +++|+|+.++..-      .|.  .+.+++..+.......+.  ....-.|+|+|..+.+....            +.+.
T Consensus       356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~  433 (591)
T PRK13616        356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLA  433 (591)
T ss_pred             eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEE
Confidence            4688999887765      243  455555544332222222  36777899998766655422            2333


Q ss_pred             EEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEE
Q psy3840          63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV  104 (131)
Q Consensus        63 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i  104 (131)
                      +.++..++...   .....|..+.|+|||. ++... +++|++
T Consensus       434 ~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        434 RTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             EEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            33443333222   2245799999999987 43332 466666

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.045  Score=35.60  Aligned_cols=99  Identities=10%  Similarity=0.034  Sum_probs=61.7

Q ss_pred             EEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC--cc----e-eeeeecCCCCeEEEEEcCCC
Q psy3840          20 ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAAS--GQ----C-EQQFSFHSAPALDVDWQSNT   91 (131)
Q Consensus        20 i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~--~~----~-~~~~~~~~~~v~~~~~~~~~   91 (131)
                      +.-++..+..+..+..+-..-..++|||+++.++.+.. .+.+.-+++..  +.    . ...+....+..-.++...++
T Consensus       145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG  224 (307)
T COG3386         145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG  224 (307)
T ss_pred             EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence            33344335555555555556678999999988777766 47788777652  21    1 11111223444556677777


Q ss_pred             cEE-EEeCCC-cEEEEeCCCCeeeEEEecc
Q psy3840          92 SFA-SCSTDQ-HIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        92 ~~~-~~~~d~-~i~i~d~~~~~~~~~~~~~  119 (131)
                      .+- ++..++ .|.+|+.. ++.+..+..+
T Consensus       225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         225 NLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             CEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            743 444444 89999988 8888888765

>KOG3617|consensus

Probab=96.96  E-value=0.0011  Score=47.78  Aligned_cols=65  Identities=18%  Similarity=0.341  Sum_probs=55.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA   67 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~   67 (131)
                      .|+|..-.|+.|-.-|.+.+|..+.+...+ ...|+.+|..+.|+++|..++++..-|.+.+|.+.
T Consensus        66 CWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   66 CWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            478888888999889999999987544443 45799999999999999999999999999999875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.94  E-value=0.022  Score=38.83  Aligned_cols=97  Identities=12%  Similarity=0.124  Sum_probs=50.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEE-cCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      |.+ .+.+|+-..+.+|.++ +.+......+... ..+..+--   |..++..+.+ .+.+||..+++.++.+...  +|
T Consensus        76 w~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~v  147 (443)
T PF04053_consen   76 WSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AV  147 (443)
T ss_dssp             E-T-SSEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-
T ss_pred             Eec-CccEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CC
Confidence            555 4556666667888885 5543332222211 12333322   7777776555 8999999999999888743  48


Q ss_pred             EEEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840          83 LDVDWQSNTSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        83 ~~~~~~~~~~~~~~~~d~~i~i~d~~  108 (131)
                      ..+.|++++.+++-..+..+.+++.+
T Consensus       148 k~V~Ws~~g~~val~t~~~i~il~~~  173 (443)
T PF04053_consen  148 KYVIWSDDGELVALVTKDSIYILKYN  173 (443)
T ss_dssp             EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred             cEEEEECCCCEEEEEeCCeEEEEEec
Confidence            89999999874443345567776643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0882|consensus

Probab=96.90  E-value=0.0035  Score=42.06  Aligned_cols=104  Identities=17%  Similarity=0.222  Sum_probs=71.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCCC----CceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcceeeeeecCCCC
Q psy3840           7 NGSFLATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      -.+++.+++-||.++.|-...    +.+..+..|-+.+.+++.+-++.++.+.+. |..++++|+.+-..+..+.-..-+
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP   98 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP   98 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence            357889999999999998653    345566778899999999999999999777 999999999876555433321111


Q ss_pred             -eEEEEEcCCC---cEEE-EeCCCcEEEEeCCCC
Q psy3840          82 -ALDVDWQSNT---SFAS-CSTDQHIHVCKLHSD  110 (131)
Q Consensus        82 -v~~~~~~~~~---~~~~-~~~d~~i~i~d~~~~  110 (131)
                       ..+...++..   .++. .-.++.+.++|-+..
T Consensus        99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d  132 (558)
T KOG0882|consen   99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGD  132 (558)
T ss_pred             CceEEecCCCCeeeeEEeecccCCCcEEECCcCC
Confidence             1112223331   2333 335678899987654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.90  E-value=0.071  Score=36.92  Aligned_cols=103  Identities=10%  Similarity=0.082  Sum_probs=64.5

Q ss_pred             EEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEE------------------eCCCcEEEEECCCcc
Q psy3840          10 FLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSA------------------GVDKTTIIWDAASGQ   70 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~------------------~~d~~i~~~d~~~~~   70 (131)
                      .+++++.+|.+...|.. |+.+......   ...+..+|  ..++.+                  ..+|.+.-.|+.+++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            57778889999999976 6666544321   11123333  222221                  235778888999988


Q ss_pred             eeeeeecCC--------CCe--EEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          71 CEQQFSFHS--------APA--LDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        71 ~~~~~~~~~--------~~v--~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .+.......        .+.  ..+.. .++.++.++.|+.++.+|.++|+.+.+.+.
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            776655321        111  11111 234577888999999999999999888764

The alignment model contains an 8-bladed beta-propeller.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.87  E-value=0.055  Score=34.99  Aligned_cols=113  Identities=12%  Similarity=0.102  Sum_probs=73.5

Q ss_pred             ccC-CCCEEEEEeCCCe-EEEEcCC-CCceeecccccccE--EEEEEcCCCCEEEEEeC-----CCcEEEEECC-Cccee
Q psy3840           4 SRN-NGSFLATGSYDGY-ARIWTSD-GSLKSTLGQHKGPI--FALKWNKRGNYILSAGV-----DKTTIIWDAA-SGQCE   72 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~-i~~~~~~-~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~-----d~~i~~~d~~-~~~~~   72 (131)
                      .+| .+..++.+-.-|+ ..+||.. ++....+....+.-  ---.|+++|+++++...     .|.|-+||.. .-+.+
T Consensus        12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri   91 (305)
T PF07433_consen   12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRI   91 (305)
T ss_pred             eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence            455 5566777777665 6678876 44444443322211  13478999999998743     5789999998 55677


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEe------------------CCCcEEEEeCCCCeeeEEE
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCS------------------TDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~------------------~d~~i~i~d~~~~~~~~~~  116 (131)
                      ..+..+.-....+.+.|++. |+.+.                  -+..+...|.++|+.+.+.
T Consensus        92 ~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~  154 (305)
T PF07433_consen   92 GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV  154 (305)
T ss_pred             eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence            78887777778888999984 55442                  1233445566667666553

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.87  E-value=0.061  Score=37.23  Aligned_cols=110  Identities=8%  Similarity=0.033  Sum_probs=67.9

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccc------cEE--EEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKG------PIF--ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~------~i~--~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      +..++.++.++.+...|.. |+.+........      .+.  .+... ++..++.++.++.++-+|.++++.+......
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            4567777778899988876 666655443221      000  01111 2267778888999999999999988776543


Q ss_pred             CCC--eEEEEEcC---CCcEEEEe---------CCCcEEEEeCCCCeeeEEEec
Q psy3840          79 SAP--ALDVDWQS---NTSFASCS---------TDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        79 ~~~--v~~~~~~~---~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ...  -..+.-+|   ++.++.++         .++.++-+|..+|+.+..+..
T Consensus       140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            221  01111122   24444443         357889999999998887654

The alignment model contains an 8-bladed beta-propeller.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.84  E-value=0.059  Score=34.94  Aligned_cols=98  Identities=12%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCcceee----eeecC
Q psy3840           5 RNNGSFLATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA-ASGQCEQ----QFSFH   78 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~-~~~~~~~----~~~~~   78 (131)
                      +++|.+++++.......-|+........ -..-...+..|.|.|++.+.+.+ ..|.++.=+. ...+...    .+...
T Consensus       153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~  231 (302)
T PF14870_consen  153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTN  231 (302)
T ss_dssp             -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred             CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccC
Confidence            5788888888655555677754322222 22245689999999998877755 8888887662 2222211    12122


Q ss_pred             CCCeEEEEEcCCCcEEEEeCCCcEE
Q psy3840          79 SAPALDVDWQSNTSFASCSTDQHIH  103 (131)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~d~~i~  103 (131)
                      ...+..++|.+++.+.+++.++.+.
T Consensus       232 ~~~~ld~a~~~~~~~wa~gg~G~l~  256 (302)
T PF14870_consen  232 GYGILDLAYRPPNEIWAVGGSGTLL  256 (302)
T ss_dssp             -S-EEEEEESSSS-EEEEESTT-EE
T ss_pred             ceeeEEEEecCCCCEEEEeCCccEE
Confidence            3357899999887755555555543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.074  Score=35.64  Aligned_cols=109  Identities=14%  Similarity=0.134  Sum_probs=73.3

Q ss_pred             ccCCCCEEEEE-eCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcceeeeeecCC
Q psy3840           4 SRNNGSFLATG-SYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         4 ~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      .++.+..++.. ..++.|.+.|...........-......++++|+++.+..+..   ++++.+.|..+++.........
T Consensus        81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~  160 (381)
T COG3391          81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN  160 (381)
T ss_pred             eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence            45566645444 3467899999663333222222225578899998877666655   6889999998888877755433


Q ss_pred             CCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCeee
Q psy3840          80 APALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~  113 (131)
                      .+ ..+++.|++. + ++-..++.+.+.|.......
T Consensus       161 ~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         161 TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            34 8899999976 4 44457889999997765444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.79  E-value=0.065  Score=39.15  Aligned_cols=100  Identities=7%  Similarity=-0.046  Sum_probs=64.8

Q ss_pred             CCEEEEEe-CCCeEEEEcCC-CCceeeccccccc-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCCcc--eeee-e-
Q psy3840           8 GSFLATGS-YDGYARIWTSD-GSLKSTLGQHKGP-IFALKWNK-----RGNYILSAGVDKTTIIWDAASGQ--CEQQ-F-   75 (131)
Q Consensus         8 ~~~l~~~~-~d~~i~~~~~~-~~~~~~~~~~~~~-i~~~~~~~-----~~~~~~s~~~d~~i~~~d~~~~~--~~~~-~-   75 (131)
                      .++|+.-. ....|+-.|++ |+.+..-..+... +..++-..     ....-+.|-.+..+..||+|-..  .+.. . 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            34444432 34567777777 7777666665543 44443211     23456778888889999998632  2211 1 


Q ss_pred             -ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840          76 -SFHSAPALDVDWQSNTSFASCSTDQHIHVCKL  107 (131)
Q Consensus        76 -~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~  107 (131)
                       ........+++-+.+|.++.|+.+|.|++||-
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~  605 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR  605 (794)
T ss_pred             ccccCCCceEEEecCCceEEEEeCCCcEEeecc
Confidence             12344678888888999999999999999993

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621|consensus

Probab=96.75  E-value=0.0048  Score=43.42  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=51.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--C--Cceee---cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--G--SLKST---LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~--~~~~~---~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      ..+++..++|+|+..|.|.++-++  .  .....   -+.|...|+++.|++++..+++|...|.+.+-.+..
T Consensus        83 ~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   83 SVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            356777888999999999999765  1  11111   123678899999999999999999999999877766

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.68  E-value=0.073  Score=33.72  Aligned_cols=111  Identities=14%  Similarity=0.066  Sum_probs=64.5

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee---------
Q psy3840           6 NNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ---------   74 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~---------   74 (131)
                      ..++.|+.|+++| +.+++..  .+.....  +...|..+...|+-+.++.-+ |+.++++++..-.....         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3578999999888 8888883  2222222  223499999999877766664 49999999876433221         


Q ss_pred             -----eecCCCCeEEEE-E-cCCC-cEEEEeCCCcEEEEeCCCC-----eeeEEEeccc
Q psy3840          75 -----FSFHSAPALDVD-W-QSNT-SFASCSTDQHIHVCKLHSD-----KPVKSFEGHT  120 (131)
Q Consensus        75 -----~~~~~~~v~~~~-~-~~~~-~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~~  120 (131)
                           .......+...+ - ..++ ..+.....+.|.+|.....     +....+....
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~  139 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD  139 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC
Confidence                 011123344444 1 1222 3444445558888877542     3455554433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.60  E-value=0.075  Score=32.83  Aligned_cols=68  Identities=12%  Similarity=0.083  Sum_probs=47.9

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCcceeeee-------e-------cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840          46 NKRGNYILSAGVDKTTIIWDAASGQCEQQF-------S-------FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        46 ~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  111 (131)
                      ..++++++....+|.+++||+.+++.+..-       .       .....|..+..+.+|..+..-.+|..+.|+..-+.
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~   98 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC   98 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence            446888999999999999999987654221       1       23456778888888883333456788999876554


Q ss_pred             ee
Q psy3840         112 PV  113 (131)
Q Consensus       112 ~~  113 (131)
                      -+
T Consensus        99 W~  100 (219)
T PF07569_consen   99 WI  100 (219)
T ss_pred             eE
Confidence            33

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.13  Score=34.48  Aligned_cols=114  Identities=15%  Similarity=0.137  Sum_probs=77.0

Q ss_pred             cccCCCCEEEEEe-CCCeEEEEcCCCCceee------cccccccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCccee
Q psy3840           3 SSRNNGSFLATGS-YDGYARIWTSDGSLKST------LGQHKGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~s~~~d---~~i~~~d~~~~~~~   72 (131)
                      +++|+++.+++.. .++.|.+.|..+..+..      .... ..-..+.++|++..+......   +.+...|..++...
T Consensus       166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~  244 (381)
T COG3391         166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT  244 (381)
T ss_pred             EECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence            4688999777765 58889999987554442      2222 233677899999977666554   58889999888766


Q ss_pred             ee-eecCCCCeEEEEEcCCCc-EE-EEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          73 QQ-FSFHSAPALDVDWQSNTS-FA-SCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        73 ~~-~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .. ..........+...|++. +. .-...+.+.+.|..+......+.
T Consensus       245 ~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         245 ATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             EeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            55 222211456678899987 33 33445789999988776666554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.40  E-value=0.074  Score=34.65  Aligned_cols=98  Identities=12%  Similarity=0.057  Sum_probs=59.4

Q ss_pred             CCEEEEEeCCCeEEEEcCCCCc-eeecccccc--cEEEEEEcCCCCEEEEEeCCCcEEEEECCC-cceeeeeec--CCCC
Q psy3840           8 GSFLATGSYDGYARIWTSDGSL-KSTLGQHKG--PIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSF--HSAP   81 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~--~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~-~~~~~~~~~--~~~~   81 (131)
                      +.+++++. ++.|.+|++.... +.....+..  .+.++..  .+++++.|+....+.++..+. ...+..+..  ....
T Consensus        98 ~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~  174 (321)
T PF03178_consen   98 NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW  174 (321)
T ss_dssp             TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred             CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence            44555554 5789999987444 333333333  4555544  466999999888888775443 222333322  2334


Q ss_pred             eEEEEEcCCC-cEEEEeCCCcEEEEeCC
Q psy3840          82 ALDVDWQSNT-SFASCSTDQHIHVCKLH  108 (131)
Q Consensus        82 v~~~~~~~~~-~~~~~~~d~~i~i~d~~  108 (131)
                      ++++.+-+++ .++.++.+|.+.++...
T Consensus       175 v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  175 VTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            7777787554 58899999999988765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2444|consensus

Probab=96.30  E-value=0.012  Score=36.23  Aligned_cols=62  Identities=19%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeeccccc-ccEEEEEEcCCCCEEEEE--eCCCcEEEEECCC
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHK-GPIFALKWNKRGNYILSA--GVDKTTIIWDAAS   68 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~-~~i~~~~~~~~~~~~~s~--~~d~~i~~~d~~~   68 (131)
                      ++.+..+++.+|.|+.|++. ++.+.....|+ .++.....+..+..+..+  +.+..++.|++..
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            34578889999999999987 55555555666 455555555556666665  6677777777654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.28  E-value=0.16  Score=33.10  Aligned_cols=86  Identities=10%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC-------CCc-eeecccccccEEEEEEcCCCCEEEEEeCCC-cEEEEECCCccee
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD-------GSL-KSTLGQHKGPIFALKWNKRGNYILSAGVDK-TTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~-------~~~-~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~-~i~~~d~~~~~~~   72 (131)
                      +||||++.++.+.. .+.|+-|++.       ++. ........+..-.++...+|.+.+++..+| .+..|+.. ++.+
T Consensus       169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~  247 (307)
T COG3386         169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL  247 (307)
T ss_pred             EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence            58999988888765 4667777654       111 111222345556677788899887665554 89999988 8888


Q ss_pred             eeeecCCCCeEEEEEcC
Q psy3840          73 QQFSFHSAPALDVDWQS   89 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~   89 (131)
                      ..+......+.+++|-.
T Consensus       248 ~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         248 GEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             EEEECCCCCCccceEeC
Confidence            88876656777888854

>KOG4499|consensus

Probab=96.28  E-value=0.13  Score=32.17  Aligned_cols=87  Identities=8%  Similarity=0.077  Sum_probs=54.5

Q ss_pred             EEEEEEcCCCCEEEEE-eCCCcEEEEE--CCCcce-----eeeeec----CCCCeEEEEEcCCCc-EEEEeCCCcEEEEe
Q psy3840          40 IFALKWNKRGNYILSA-GVDKTTIIWD--AASGQC-----EQQFSF----HSAPALDVDWQSNTS-FASCSTDQHIHVCK  106 (131)
Q Consensus        40 i~~~~~~~~~~~~~s~-~~d~~i~~~d--~~~~~~-----~~~~~~----~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d  106 (131)
                      -..++|+.+.+.+... +.+-++.-||  +.+|..     +..+..    .....-.++...+|. +++.-..++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            3567888877766554 4467787777  555532     222221    111223444556777 45555667899999


Q ss_pred             CCCCeeeEEEecccceEEEE
Q psy3840         107 LHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ..+|+.+.++......++++
T Consensus       240 p~tGK~L~eiklPt~qitsc  259 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSC  259 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEE
Confidence            99999999988765555443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.27  E-value=0.032  Score=36.89  Aligned_cols=68  Identities=15%  Similarity=0.326  Sum_probs=45.3

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeE
Q psy3840          46 NKRGNYILSA---------GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        46 ~~~~~~~~s~---------~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                      ||++++++..         +..+...++|+.+++....... ...+....|+|+++.++--.++.|++.++.+++..+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeEE
Confidence            4566655542         2345688999998765433332 567888999999985555667899999988775443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.15  E-value=0.23  Score=33.63  Aligned_cols=77  Identities=6%  Similarity=0.005  Sum_probs=50.8

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-------------------------------------------eeeee
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-------------------------------------------CEQQF   75 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-------------------------------------------~~~~~   75 (131)
                      .|..+.|.++..-++.+...|.+-+|.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            46777888877777888888887777443210                                           00111


Q ss_pred             ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEE
Q psy3840          76 SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  115 (131)
                      ....++|++++.+.=|.++.|..+|.+.|.|+|....+..
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEee
Confidence            2335789999997668889999999999999987776665

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.14  E-value=0.34  Score=35.63  Aligned_cols=109  Identities=13%  Similarity=0.101  Sum_probs=69.4

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccc--------cEEEEEEc----------------CCCCEEEEEeCCCcEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKG--------PIFALKWN----------------KRGNYILSAGVDKTTI   62 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~--------~i~~~~~~----------------~~~~~~~s~~~d~~i~   62 (131)
                      +..++.++.++.|.-.|.. |+.+.++.....        .++.+.+.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            5677777788888888866 666665543221        01222221                1344788888999999


Q ss_pred             EEECCCcceeeeeecCCCCe-------------EEEEEcC---CCcEEEEeC----------CCcEEEEeCCCCeeeEEE
Q psy3840          63 IWDAASGQCEQQFSFHSAPA-------------LDVDWQS---NTSFASCST----------DQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        63 ~~d~~~~~~~~~~~~~~~~v-------------~~~~~~~---~~~~~~~~~----------d~~i~i~d~~~~~~~~~~  116 (131)
                      -.|.++|+.+..+... +.+             ..+.-.|   ++.++.++.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999988765421 111             0111122   455666542          578999999999998887


Q ss_pred             e
Q psy3840         117 E  117 (131)
Q Consensus       117 ~  117 (131)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            5

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.12  E-value=0.11  Score=32.08  Aligned_cols=63  Identities=16%  Similarity=0.223  Sum_probs=44.6

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCC-Ccee-------ecc-------cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840           5 RNNGSFLATGSYDGYARIWTSDG-SLKS-------TLG-------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~~-~~~~-------~~~-------~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      ..+++++++-+.+|.+++||+.. +.+.       .+.       .....|..+.++.+|..+++-+ +|..+.|+..-
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            45688999999999999999872 2111       111       2446788888888888877664 46788888653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.11  E-value=0.19  Score=32.41  Aligned_cols=55  Identities=13%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             cccCCCCEEEEEeCC-----CeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeC
Q psy3840           3 SSRNNGSFLATGSYD-----GYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGV   57 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d-----~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~   57 (131)
                      .||+||.+|++.-+|     |.|=+||..  ...+.++..|.-.-..+.+.+||+.++.++.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            489999999876443     457789976  4556677777767788999999999887643

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.09  E-value=0.042  Score=24.61  Aligned_cols=30  Identities=10%  Similarity=0.187  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCC-C--c-EEEEeCCCcEEEEeCCC
Q psy3840          80 APALDVDWQSN-T--S-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        80 ~~v~~~~~~~~-~--~-~~~~~~d~~i~i~d~~~  109 (131)
                      +.+.+++|+|+ +  . ++.+-..+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            35789999975 4  3 56677778999999995

It contains a characteristic DLL sequence motif.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.05  E-value=0.31  Score=34.29  Aligned_cols=62  Identities=10%  Similarity=0.043  Sum_probs=39.9

Q ss_pred             CcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          59 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        59 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      +.+.-+|+.+++.....+..............+.++.++.++.++.+|.++|+.+.+++...
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~  502 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS  502 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence            45667788888777655432211111111233446667789999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1920|consensus

Probab=96.02  E-value=0.21  Score=38.01  Aligned_cols=102  Identities=15%  Similarity=0.257  Sum_probs=60.9

Q ss_pred             cccCCCCEEEEEeC---CCeEEEEcCCCC----ceeecccccccEEEEEEcCCCCEEEE---EeCCCcEEEEECCCcc--
Q psy3840           3 SSRNNGSFLATGSY---DGYARIWTSDGS----LKSTLGQHKGPIFALKWNKRGNYILS---AGVDKTTIIWDAASGQ--   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---d~~i~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~s---~~~d~~i~~~d~~~~~--   70 (131)
                      +|-|.|..+++-..   |+.|.+|.-+|-    ..........++..++|+.++..++.   ......+++|...+-.  
T Consensus       248 sWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  248 SWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             eecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence            57889999988643   456888887642    22223333445899999999998887   4445569999987631  


Q ss_pred             eeeeeecCCCCeEEEEEcCCC--cEEEEeCCCcEEEEe
Q psy3840          71 CEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCK  106 (131)
Q Consensus        71 ~~~~~~~~~~~v~~~~~~~~~--~~~~~~~d~~i~i~d  106 (131)
                      ..+.+.......  +.|+|..  ++..-..+|...++|
T Consensus       328 LKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~  363 (1265)
T KOG1920|consen  328 LKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD  363 (1265)
T ss_pred             EEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence            112222111111  7777752  243333555554444

>KOG1916|consensus

Probab=95.94  E-value=0.005  Score=44.89  Aligned_cols=102  Identities=15%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             CeEEEEcCC---CCceeec-----ccccccEEEEEEcC---CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840          18 GYARIWTSD---GSLKSTL-----GQHKGPIFALKWNK---RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD   86 (131)
Q Consensus        18 ~~i~~~~~~---~~~~~~~-----~~~~~~i~~~~~~~---~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~   86 (131)
                      |.+.+|++.   |+....+     ......+.-+.|+|   +..++..+..++.+++.+...... ..+..|...+..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            456678764   4432222     22333456666766   556777788889988766554322 22333443333332


Q ss_pred             -----------EcCCCc-EEEEeCCCcEEEEeC-----CCCeeeEEEeccc
Q psy3840          87 -----------WQSNTS-FASCSTDQHIHVCKL-----HSDKPVKSFEGHT  120 (131)
Q Consensus        87 -----------~~~~~~-~~~~~~d~~i~i~d~-----~~~~~~~~~~~~~  120 (131)
                                 .+|||+ ++.+..||.+.+|.+     +...++..++.|.
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence                       578988 888999998777764     3335666666666

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.86  E-value=0.33  Score=33.02  Aligned_cols=64  Identities=20%  Similarity=0.320  Sum_probs=45.8

Q ss_pred             ccCCCCEEEEEeCC----------C-eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840           4 SRNNGSFLATGSYD----------G-YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         4 ~~~~~~~l~~~~~d----------~-~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      .+|.|.-+|...++          . .|++|+..|+.+....=..+.+.++.|..+.. ++....||.++++|+..
T Consensus        36 ~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   36 VAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCC
Confidence            34555556555333          1 59999999888877544448999999988655 45566999999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.84  E-value=0.24  Score=31.28  Aligned_cols=106  Identities=13%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             cccCCCC-EEEEEeCCCeEEEEcCCCCceeecccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc------eeee
Q psy3840           3 SSRNNGS-FLATGSYDGYARIWTSDGSLKSTLGQH-KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ------CEQQ   74 (131)
Q Consensus         3 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~------~~~~   74 (131)
                      +|+|+.+ ++++....+.|..++.+|+.+....-. .+-...+++..++.++++...++.+.++++....      ....
T Consensus        28 Ty~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~  107 (248)
T PF06977_consen   28 TYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQK  107 (248)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEE
T ss_pred             EEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceE
Confidence            4677655 555555677888888888877665432 2456788888788888877779999998884321      1111


Q ss_pred             ee-----cCCCCeEEEEEcCCC-cEEEEeCCCcEEEEeCC
Q psy3840          75 FS-----FHSAPALDVDWQSNT-SFASCSTDQHIHVCKLH  108 (131)
Q Consensus        75 ~~-----~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~  108 (131)
                      +.     ..+..+..++|+|.+ +++.+....-..+|.++
T Consensus       108 ~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~  147 (248)
T PF06977_consen  108 ISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN  147 (248)
T ss_dssp             EE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             EecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence            21     234568899999974 46666555545555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.81  E-value=0.15  Score=35.83  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=28.0

Q ss_pred             cEEEEEEcC----CCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840          39 PIFALKWNK----RGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus        39 ~i~~~~~~~----~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      ....+++++    +..++++.+.|+.+|+||+.+++++...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            455566666    6789999999999999999999885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.73  E-value=0.37  Score=32.57  Aligned_cols=107  Identities=17%  Similarity=0.234  Sum_probs=62.5

Q ss_pred             cccCCCCEEEEEe-CCC----eEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCC-----------cEEEEE
Q psy3840           3 SSRNNGSFLATGS-YDG----YARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK-----------TTIIWD   65 (131)
Q Consensus         3 ~~~~~~~~l~~~~-~d~----~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~-----------~i~~~d   65 (131)
                      .++|++++++.+- ..|    .++++|+. ++.+...... .....+.|.++++.++....+.           .++.|.
T Consensus       130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            4789999998763 344    48899997 4443322111 1223489999988776654332           367777


Q ss_pred             CCCccee--eeeecCCCC--eEEEEEcCCCc-E-EEEeC--C-CcEEEEeCCCC
Q psy3840          66 AASGQCE--QQFSFHSAP--ALDVDWQSNTS-F-ASCST--D-QHIHVCKLHSD  110 (131)
Q Consensus        66 ~~~~~~~--~~~~~~~~~--v~~~~~~~~~~-~-~~~~~--d-~~i~i~d~~~~  110 (131)
                      +.+...-  ..+......  ...+..+++++ + +....  + ..+++.++..+
T Consensus       209 ~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  209 LGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             TTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            7665432  334333333  55778888887 3 32322  3 45888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.72  E-value=0.45  Score=33.51  Aligned_cols=108  Identities=6%  Similarity=-0.012  Sum_probs=66.7

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeeccccc-ccEEE----------EEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHK-GPIFA----------LKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~-~~i~~----------~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      +..+++++.++.|.-.|.. |+.+.+..... ..+..          +++  .+..++.++.++.+.-.|.++|+.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4667777778888888876 66666543211 11111          111  2345677888999999999999988765


Q ss_pred             ecCCCC-eEEEEEcC---CCcEEEEeC------CCcEEEEeCCCCeeeEEEe
Q psy3840          76 SFHSAP-ALDVDWQS---NTSFASCST------DQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        76 ~~~~~~-v~~~~~~~---~~~~~~~~~------d~~i~i~d~~~~~~~~~~~  117 (131)
                      ...... -..+.-+|   +++++.+..      ++.|.-+|.++|+.+..+.
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            431111 01111122   455555432      6789999999999888764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.65  E-value=0.29  Score=35.56  Aligned_cols=101  Identities=11%  Similarity=0.109  Sum_probs=64.7

Q ss_pred             CCCEEEEEeCCCeEEEEcCC------CCc---e-----------eecccccccEEEEEEc--CCCCEEEEEeCCCcEEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD------GSL---K-----------STLGQHKGPIFALKWN--KRGNYILSAGVDKTTIIW   64 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~------~~~---~-----------~~~~~~~~~i~~~~~~--~~~~~~~s~~~d~~i~~~   64 (131)
                      +.+.|+.+.+||.|.+|.++      .+.   .           .........++.++++  ...+++|+++....|.+|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            35788999999999999653      000   0           0001123478899998  788888888888888887


Q ss_pred             ECCCc--ce-eeeeecCCCCeEEEEEcCC-----C--cEEEEeCCCcEEEEeC
Q psy3840          65 DAASG--QC-EQQFSFHSAPALDVDWQSN-----T--SFASCSTDQHIHVCKL  107 (131)
Q Consensus        65 d~~~~--~~-~~~~~~~~~~v~~~~~~~~-----~--~~~~~~~d~~i~i~d~  107 (131)
                      -....  +. ...-..+..-|.++.|-++     |  .+++++=.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            55432  11 1111124456778888553     3  2566777898888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.59  E-value=0.61  Score=34.17  Aligned_cols=72  Identities=11%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------cce---eeeee--------cCCCCeEEEEEcCC----CcEE
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDAAS---------GQC---EQQFS--------FHSAPALDVDWQSN----TSFA   94 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~---------~~~---~~~~~--------~~~~~v~~~~~~~~----~~~~   94 (131)
                      .|..+.++|+|++++..+..|...+.=.+.         ++.   .+.+.        .....|..+.|+|.    ..++
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            467788999999999888876444322221         111   11111        22346889999985    3488


Q ss_pred             EEeCCCcEEEEeCCCC
Q psy3840          95 SCSTDQHIHVCKLHSD  110 (131)
Q Consensus        95 ~~~~d~~i~i~d~~~~  110 (131)
                      .-..|+.+++||+...
T Consensus       166 vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEecCCEEEEEecCCC
Confidence            8899999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916|consensus

Probab=95.34  E-value=0.018  Score=42.18  Aligned_cols=108  Identities=11%  Similarity=0.122  Sum_probs=65.0

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEE-----------EEcCCCCEEEEEeCCCcEEEEECC-----C
Q psy3840           5 RNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFAL-----------KWNKRGNYILSAGVDKTTIIWDAA-----S   68 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~~s~~~d~~i~~~d~~-----~   68 (131)
                      -++.-++..+..++++++.+.+......+.+|...+..+           ..+|||..++.+..||.++.|.+.     .
T Consensus       192 ~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~  271 (1283)
T KOG1916|consen  192 AVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV  271 (1283)
T ss_pred             ccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc
Confidence            345567777778888888776543334444555443332           368999999999999998888653     2


Q ss_pred             cceeeeeecCCC--CeEEEEEcC------C-Cc---EEE-EeCCCcEEEEeCCCCeee
Q psy3840          69 GQCEQQFSFHSA--PALDVDWQS------N-TS---FAS-CSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        69 ~~~~~~~~~~~~--~v~~~~~~~------~-~~---~~~-~~~d~~i~i~d~~~~~~~  113 (131)
                      ..++..++.|.+  .++.+ ++.      + +.   +++ ...+..+++|.....+|+
T Consensus       272 ~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  272 HRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             HhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            334444444442  23333 322      1 22   233 344567999988776665

>KOG4499|consensus

Probab=95.32  E-value=0.39  Score=30.22  Aligned_cols=87  Identities=9%  Similarity=0.043  Sum_probs=57.6

Q ss_pred             ccCCCCEE-EEEeCCCeEEEEcC--C-C-----Cceeeccc---cc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840           4 SRNNGSFL-ATGSYDGYARIWTS--D-G-----SLKSTLGQ---HK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         4 ~~~~~~~l-~~~~~d~~i~~~~~--~-~-----~~~~~~~~---~~-~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      |+.+...+ .+-+.+-+|.-||.  + |     +.+..++.   .. ..--.++.+.+|.++++.-..+++...|+.+|+
T Consensus       165 Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK  244 (310)
T KOG4499|consen  165 WDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK  244 (310)
T ss_pred             ccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence            44444444 44445667777773  3 2     11222211   11 112345556788888888889999999999999


Q ss_pred             eeeeeecCCCCeEEEEEcCC
Q psy3840          71 CEQQFSFHSAPALDVDWQSN   90 (131)
Q Consensus        71 ~~~~~~~~~~~v~~~~~~~~   90 (131)
                      .+..+.-....+++++|-..
T Consensus       245 ~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  245 ILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEEEEcCCCceEEEEecCC
Confidence            99998888889999999654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.16  E-value=0.29  Score=34.47  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=42.8

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC----cceeee-----------ee-----------cCCCCeEEEEEcC----C-CcEEE
Q psy3840          47 KRGNYILSAGVDKTTIIWDAAS----GQCEQQ-----------FS-----------FHSAPALDVDWQS----N-TSFAS   95 (131)
Q Consensus        47 ~~~~~~~s~~~d~~i~~~d~~~----~~~~~~-----------~~-----------~~~~~v~~~~~~~----~-~~~~~   95 (131)
                      ++...++.+..||.+.......    +.....           +.           .........+.++    + ..+++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4666778888888888776553    111110           00           0112344555554    3 33789


Q ss_pred             EeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          96 CSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        96 ~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      .+.|+.+++||+++++++.+....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEETT
T ss_pred             EeCCCeEEEEECCCCeEEEEeccc
Confidence            999999999999999997776443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA02713 hypothetical protein; Provisional

Probab=94.76  E-value=0.43  Score=33.81  Aligned_cols=71  Identities=1%  Similarity=-0.002  Sum_probs=40.7

Q ss_pred             CCCEEEEEeCC------CcEEEEECCC-c--ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCC--cEEEEeCCCCeeeEE
Q psy3840          48 RGNYILSAGVD------KTTIIWDAAS-G--QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQ--HIHVCKLHSDKPVKS  115 (131)
Q Consensus        48 ~~~~~~s~~~d------~~i~~~d~~~-~--~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~--~i~i~d~~~~~~~~~  115 (131)
                      +++..+.|+.+      ..+..||+.+ .  ..+..++...........  +++ +++|+.++  .+..||..+.+--..
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence            56667777654      2356788876 2  333344333222222222  455 68888887  688889887765444


Q ss_pred             Eeccc
Q psy3840         116 FEGHT  120 (131)
Q Consensus       116 ~~~~~  120 (131)
                      ...|.
T Consensus       541 ~~~~~  545 (557)
T PHA02713        541 CHQHS  545 (557)
T ss_pred             hhhcC
Confidence            44443

>KOG3630|consensus

Probab=94.76  E-value=0.19  Score=38.15  Aligned_cols=69  Identities=9%  Similarity=-0.062  Sum_probs=47.8

Q ss_pred             ccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcc-eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeC
Q psy3840          38 GPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQ-CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKL  107 (131)
Q Consensus        38 ~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~  107 (131)
                      ....++.|.|.- ...+....|+.|++.-+.... .+..+. .....++++|+|.|+ ++.|...|++.-|-.
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec
Confidence            345677888843 345666778888877665322 222222 345789999999987 888988999887754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.71  E-value=0.68  Score=31.61  Aligned_cols=74  Identities=11%  Similarity=0.090  Sum_probs=46.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeeccccccc-EEEEEEc-CCC---------------C--EEEEEeCCCcEEE
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGP-IFALKWN-KRG---------------N--YILSAGVDKTTII   63 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~-i~~~~~~-~~~---------------~--~~~s~~~d~~i~~   63 (131)
                      .+|++++.++...-|.|.++|+. +..++..++..+. +.-+... +..               .  +++-+-.-|.+.+
T Consensus       315 ~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEv  394 (415)
T PF14655_consen  315 LSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEV  394 (415)
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEE
Confidence            57888988888888999999987 4445555554331 1111111 111               1  2334566788889


Q ss_pred             EECCCcceeeeeec
Q psy3840          64 WDAASGQCEQQFSF   77 (131)
Q Consensus        64 ~d~~~~~~~~~~~~   77 (131)
                      |.++.|..+..+..
T Consensus       395 W~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  395 WSMRQGPRVAAFNV  408 (415)
T ss_pred             EecCCCCEEEEEEe
Confidence            99988887776654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.68  E-value=0.93  Score=32.69  Aligned_cols=68  Identities=18%  Similarity=0.267  Sum_probs=45.1

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-cCCCCeEEEEEc--CCCc-EEEEeCCCcEEEEe
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDWQ--SNTS-FASCSTDQHIHVCK  106 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~-~~~~~~d~~i~i~d  106 (131)
                      ....+.-+.-++..++.+....+.|||.+.+....... ...+.|.++.|.  |+++ +++.+-.+.|.+|-
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            33444445545555555556679999999876443322 346789999995  5676 77778888888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395|consensus

Probab=94.62  E-value=0.68  Score=32.50  Aligned_cols=95  Identities=8%  Similarity=-0.067  Sum_probs=58.8

Q ss_pred             EEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCC-------EEEEEeCCCcEEEEECCCc-c-eeeeeec----
Q psy3840          12 ATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGN-------YILSAGVDKTTIIWDAASG-Q-CEQQFSF----   77 (131)
Q Consensus        12 ~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-------~~~s~~~d~~i~~~d~~~~-~-~~~~~~~----   77 (131)
                      ..+.....++--|++ |+.+.+-+.+.. |.-+.+.|+..       .=+.|-.+..+.-||++-. . .+..-+.    
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            334444456666766 666655555544 66666666432       2245667778888998842 2 1211111    


Q ss_pred             CCCCeEEEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840          78 HSAPALDVDWQSNTSFASCSTDQHIHVCKL  107 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~  107 (131)
                      ......|.+-..+|.++.|+.+|.|++||-
T Consensus       429 ~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  429 TKNNFSCFATTESGYIVVGSLKGDIRLYDR  458 (644)
T ss_pred             cccccceeeecCCceEEEeecCCcEEeehh
Confidence            123456777777888999999999999984

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.61  E-value=0.91  Score=30.84  Aligned_cols=72  Identities=11%  Similarity=0.132  Sum_probs=48.2

Q ss_pred             ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee--c------CCCCeEEEEEc-----CCC---c-EEEEeC
Q psy3840          36 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS--F------HSAPALDVDWQ-----SNT---S-FASCST   98 (131)
Q Consensus        36 ~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~--~------~~~~v~~~~~~-----~~~---~-~~~~~~   98 (131)
                      ..++|++++.+ +=-.++.|..+|.+.+.|+|....+..-.  .      ....++++.|.     .|+   . ++.|..
T Consensus        85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn  163 (395)
T PF08596_consen   85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN  163 (395)
T ss_dssp             -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred             cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence            35788898876 55688899999999999998776554421  1      22346777774     233   2 677888


Q ss_pred             CCcEEEEeCC
Q psy3840          99 DQHIHVCKLH  108 (131)
Q Consensus        99 d~~i~i~d~~  108 (131)
                      .|.+.+|.+.
T Consensus       164 ~G~v~~fkIl  173 (395)
T PF08596_consen  164 SGNVLTFKIL  173 (395)
T ss_dssp             TSEEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            8999999764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.54  E-value=0.16  Score=22.02  Aligned_cols=37  Identities=8%  Similarity=0.126  Sum_probs=25.0

Q ss_pred             CCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          89 SNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        89 ~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      |+++ + ++...++.|.++|..+++.+..+..-..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i   39 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGV   39 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceE
Confidence            3444 4 44556789999999999888887654444333

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.49  E-value=0.72  Score=29.20  Aligned_cols=103  Identities=15%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             cccCCCCEEEEEe--C-CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCccee-eee--
Q psy3840           3 SSRNNGSFLATGS--Y-DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD-AASGQCE-QQF--   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~--~-d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d-~~~~~~~-~~~--   75 (131)
                      +.+++++.++...  . ...+.++...+.....+.+  ..+..-.|++++...+....+...+++. ...+... ...  
T Consensus        30 AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~  107 (253)
T PF10647_consen   30 AVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW  107 (253)
T ss_pred             EECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc
Confidence            4688898887766  2 3345565554433333322  2567778999988777777666666663 3333221 111  


Q ss_pred             ecCCCCeEEEEEcCCCc-EEEE---eCCCcEEEEeC
Q psy3840          76 SFHSAPALDVDWQSNTS-FASC---STDQHIHVCKL  107 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~-~~~~---~~d~~i~i~d~  107 (131)
                      ......|.++.++|||. ++.-   ..++.|.+--+
T Consensus       108 ~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  108 PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            11122899999999986 4332   23466766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>smart00564 PQQ beta-propeller repeat

Probab=94.42  E-value=0.15  Score=20.94  Aligned_cols=27  Identities=11%  Similarity=0.123  Sum_probs=21.9

Q ss_pred             CCcEEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          90 NTSFASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        90 ~~~~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      ++.++.++.++.++.+|.++|+.+.++
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            456778888999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.32  E-value=0.99  Score=30.14  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             CEEEEEeCCCeEEEEcCC-CCceeeccccc--ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC-CeEE
Q psy3840           9 SFLATGSYDGYARIWTSD-GSLKSTLGQHK--GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-PALD   84 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~~   84 (131)
                      ..+.++..+|.+.-.|.. +..+.....-.  ..+..-.+..+|+ ++.++.++.++.+|.++|+.+........ ....
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            445555677777777766 33333222111  1111112222455 67777888888899888988877765440 1111


Q ss_pred             EEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          85 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        85 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      -..-.++.+...+.++.+.-.|-.+++.+..+.
T Consensus       148 ~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~  180 (370)
T COG1520         148 PPVVGDGTVYVGTDDGHLYALNADTGTLKWTYE  180 (370)
T ss_pred             CcEEcCcEEEEecCCCeEEEEEccCCcEEEEEe
Confidence            112224445555577888888888887766654

>KOG2247|consensus

Probab=94.14  E-value=0.013  Score=39.99  Aligned_cols=100  Identities=13%  Similarity=0.230  Sum_probs=67.6

Q ss_pred             ccCCCCEEEE-EeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           4 SRNNGSFLAT-GSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      |..++..++. +-..+.+.+|+++.+....+.. .+..-.-+.|++....++.+...+.+.+++..+.+..-....|..+
T Consensus        82 wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR  161 (615)
T KOG2247|consen   82 WDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR  161 (615)
T ss_pred             hccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccc
Confidence            3445555444 4457789999987433333321 1111223678888888888889999999998887766555557778


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEE
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIH  103 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~  103 (131)
                      +..+++.+++..+.++.|..+.
T Consensus       162 gtq~av~lEd~vil~dcd~~L~  183 (615)
T KOG2247|consen  162 GTQIAVTLEDYVILCDCDNTLS  183 (615)
T ss_pred             eeEEEecccceeeecCcHHHHH
Confidence            8999999988877776655443

>KOG2377|consensus

Probab=94.14  E-value=1.3  Score=30.77  Aligned_cols=91  Identities=19%  Similarity=0.124  Sum_probs=55.7

Q ss_pred             CEEEEEeCCCeEEEEcCCC----CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee----eeeecCCC
Q psy3840           9 SFLATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE----QQFSFHSA   80 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~----~~~~~~~~   80 (131)
                      ++.+.+...|-+.-|-+++    .++..-....++|.++.|++|.+.+++--.+.++.+++....+..    ...+....
T Consensus        34 NkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~  113 (657)
T KOG2377|consen   34 NKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNA  113 (657)
T ss_pred             cceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcc
Confidence            3333334455566665542    222222345679999999999999999999999999987433221    11222334


Q ss_pred             CeEEEEEcCCCcEEEEeCC
Q psy3840          81 PALDVDWQSNTSFASCSTD   99 (131)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~d   99 (131)
                      .+....|..+..++.-...
T Consensus       114 ~IlGF~W~~s~e~A~i~~~  132 (657)
T KOG2377|consen  114 NILGFCWTSSTEIAFITDQ  132 (657)
T ss_pred             eeEEEEEecCeeEEEEecC
Confidence            5777888766545444433

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.13  E-value=0.21  Score=21.66  Aligned_cols=31  Identities=13%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCcceeeeeec
Q psy3840          47 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus        47 ~~~~~~~s~~-~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      |+++.++.+. .++++.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4566555554 578999999988887777665

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.00  E-value=1.3  Score=30.25  Aligned_cols=56  Identities=16%  Similarity=0.300  Sum_probs=40.3

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC-CCCeEEEEEcCCCc
Q psy3840          37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-SAPALDVDWQSNTS   92 (131)
Q Consensus        37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~   92 (131)
                      .+++..|+.||+++.++.-..+|.+.+....-.+....+... ......+.|+.+..
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence            368999999999999999989999988775544444444432 34556777776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.76  E-value=1.4  Score=29.83  Aligned_cols=69  Identities=13%  Similarity=0.132  Sum_probs=42.7

Q ss_pred             EEEEEcCCCCEEEEE-eCCC----cEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EE-EEeC----------CCcEE
Q psy3840          41 FALKWNKRGNYILSA-GVDK----TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FA-SCST----------DQHIH  103 (131)
Q Consensus        41 ~~~~~~~~~~~~~s~-~~d~----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~----------d~~i~  103 (131)
                      ....++|++++++-+ +..|    .++++|+.+++.+..-... .....+.|.+++. ++ +...          ...|+
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            356889999988754 3334    4899999999766432211 1222399999966 43 3322          22377


Q ss_pred             EEeCCCC
Q psy3840         104 VCKLHSD  110 (131)
Q Consensus       104 i~d~~~~  110 (131)
                      .|.+.+.
T Consensus       206 ~~~~gt~  212 (414)
T PF02897_consen  206 RHKLGTP  212 (414)
T ss_dssp             EEETTS-
T ss_pred             EEECCCC
Confidence            7777665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.76  E-value=1.2  Score=29.10  Aligned_cols=70  Identities=11%  Similarity=0.198  Sum_probs=40.4

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEe
Q psy3840          37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCK  106 (131)
Q Consensus        37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d  106 (131)
                      .+.+..+.-++++++++++.......-||.-...=..........+..|.|.|++.+......+.++.=+
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~  213 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSD  213 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEcc
Confidence            4567778888999988888766666678754321111122235689999999998865556778887766

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.51  E-value=0.84  Score=28.94  Aligned_cols=64  Identities=14%  Similarity=0.182  Sum_probs=41.7

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCee
Q psy3840          47 KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        47 ~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  112 (131)
                      ..++.++.|..+| +++++........... ....|..+...++-.++..-.|+.++++++.....
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~   68 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEP   68 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEcCCccEEEEchhhcc
Confidence            3577888998888 8889983332222222 22348889888874433333459999999875433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.48  E-value=2  Score=30.75  Aligned_cols=100  Identities=7%  Similarity=0.068  Sum_probs=57.2

Q ss_pred             CCEEEEEeCCCeEEEEcCC------CCceeecccc-----cccEEEEEEcCCCCEEEEEeCCCcEEEEECCC--cceeee
Q psy3840           8 GSFLATGSYDGYARIWTSD------GSLKSTLGQH-----KGPIFALKWNKRGNYILSAGVDKTTIIWDAAS--GQCEQQ   74 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~------~~~~~~~~~~-----~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~--~~~~~~   74 (131)
                      ...+++......|.+|.+.      ++.+..-..+     .---..+.|+|....++.-.....--+++++.  .+....
T Consensus        72 ~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD  151 (671)
T PF15390_consen   72 TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD  151 (671)
T ss_pred             CCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe
Confidence            3345555667889999865      2222111111     11124567999887776655544434455543  333334


Q ss_pred             eecCCCCeEEEEEcCCCc-EEEE-eCCCcEEEEeCC
Q psy3840          75 FSFHSAPALDVDWQSNTS-FASC-STDQHIHVCKLH  108 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~  108 (131)
                      +. ..+.|.+.+|..||+ ++.+ +..=.-++||-.
T Consensus       152 i~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  152 IK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            43 457899999999976 5433 333456889854

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.27  E-value=1.3  Score=29.47  Aligned_cols=58  Identities=14%  Similarity=0.188  Sum_probs=35.8

Q ss_pred             EEEEcCC-CCceeecccccccEEEEEEcCCCC-EEEEE-eCCCcEEEEECCCcceeeeeecC
Q psy3840          20 ARIWTSD-GSLKSTLGQHKGPIFALKWNKRGN-YILSA-GVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus        20 i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~s~-~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      |-++|+. ++.+.++.. ..++.++..+.+.+ +|+.. ..++.+.+||..+++.+..+..-
T Consensus       271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            4455655 445544442 34577888888655 55444 45789999999999998887753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF01011 PQQ: PQQ enzyme repeat family

Probab=93.26  E-value=0.32  Score=20.91  Aligned_cols=28  Identities=11%  Similarity=0.056  Sum_probs=23.4

Q ss_pred             cEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          92 SFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        92 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      .+..++.++.++-.|.++|+.+..++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4556688999999999999999988643

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG2247|consensus

Probab=93.16  E-value=0.0047  Score=42.06  Aligned_cols=106  Identities=18%  Similarity=0.276  Sum_probs=65.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      |.+.+.-++.++.+..+..||-.++...... .++....++|+.++..++ .+...+.+.+||+.+......-.+-...-
T Consensus        42 w~~e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~  120 (615)
T KOG2247|consen   42 WRPEGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSK  120 (615)
T ss_pred             EecCCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchH
Confidence            5566666888888888888886655544332 345667788888776544 55678899999997643221111111111


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      .-..|++... ++.+.-.+.+.+++..+.
T Consensus       121 sll~wsKg~~el~ig~~~gn~viynhgts  149 (615)
T KOG2247|consen  121 SLLAWSKGTPELVIGNNAGNIVIYNHGTS  149 (615)
T ss_pred             HHHhhccCCccccccccccceEEEeccch
Confidence            2255666644 566666677777776544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.02  E-value=2  Score=30.42  Aligned_cols=61  Identities=10%  Similarity=0.143  Sum_probs=45.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840          48 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        48 ~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~  108 (131)
                      ...+++.++..|-|++||--.......+++....|-.+..+.+|..+.+.....+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            4558999999999999996554444556777778888989999885555555677777764

>PHA02713 hypothetical protein; Provisional

Probab=92.82  E-value=2  Score=30.65  Aligned_cols=52  Identities=12%  Similarity=0.073  Sum_probs=25.7

Q ss_pred             CCCEEEEEeCCC-----eEEEEcCCCCceeecccccccEEEEE-EcCCCCEEEEEeCC
Q psy3840           7 NGSFLATGSYDG-----YARIWTSDGSLKSTLGQHKGPIFALK-WNKRGNYILSAGVD   58 (131)
Q Consensus         7 ~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~s~~~d   58 (131)
                      ++.+.+.|+.++     .+..||........+.....+..... ..-++..++.|+.+
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~  408 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRT  408 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCC
Confidence            456667777653     37778876433333222221111111 12267777777654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.61  E-value=3.2  Score=30.69  Aligned_cols=66  Identities=18%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcC-----C-----CCce---eec--------ccccccEEEEEEcCC---CCEEEEEeCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTS-----D-----GSLK---STL--------GQHKGPIFALKWNKR---GNYILSAGVDK   59 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~-----~-----~~~~---~~~--------~~~~~~i~~~~~~~~---~~~~~s~~~d~   59 (131)
                      .+++|..++..+..|..-+.=.     .     |+..   +++        ......|..+.|+|.   +..++.-..|+
T Consensus        92 ~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn  171 (717)
T PF10168_consen   92 LNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDN  171 (717)
T ss_pred             ECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCC
Confidence            5889999999888764333211     1     1110   000        123457889999994   57899999999


Q ss_pred             cEEEEECCCc
Q psy3840          60 TTIIWDAASG   69 (131)
Q Consensus        60 ~i~~~d~~~~   69 (131)
                      ++++||+...
T Consensus       172 ~lR~y~~~~~  181 (717)
T PF10168_consen  172 TLRLYDISDP  181 (717)
T ss_pred             EEEEEecCCC
Confidence            9999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.50  E-value=2.4  Score=28.96  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=41.5

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-----eeeeeec--CCCCeEEEEEcCCCcEEEEeCCCcEEEE
Q psy3840          37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-----CEQQFSF--HSAPALDVDWQSNTSFASCSTDQHIHVC  105 (131)
Q Consensus        37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-----~~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~~i~i~  105 (131)
                      ...+..+.+.+++..++.+ ..|.+. +.-..++     .......  ....+.++.+.+++.++.++.+|.+...
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s  353 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS  353 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe
Confidence            3467889999998888766 445543 3333332     1222221  2235788999888887777777766554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.43  E-value=1.9  Score=27.64  Aligned_cols=109  Identities=8%  Similarity=0.079  Sum_probs=61.4

Q ss_pred             CCCCEEEEEeCCC--eEEEEcCC-CCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           6 NNGSFLATGSYDG--YARIWTSD-GSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         6 ~~~~~l~~~~~d~--~i~~~~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .++.++-+.+.-|  .|+.+|+. ++......- ..-.-..+... +++.+.-.-.++...+||..+-+.+..+.-. ..
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~E  131 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GE  131 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecC-Cc
Confidence            3455555555555  58888877 443322211 11112223322 2334444456889999999998888887653 46


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      -+.++.. +..++..+....++++|.++.+...++.
T Consensus       132 GWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  132 GWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             --EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             ceEEEcC-CCEEEEECCccceEEECCcccceEEEEE
Confidence            6777742 2347777778899999998876666553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.28  E-value=2.2  Score=28.52  Aligned_cols=71  Identities=11%  Similarity=0.003  Sum_probs=48.6

Q ss_pred             CEEEEEeCCCcEEEEECCCcceeeeeecCC--CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          50 NYILSAGVDKTTIIWDAASGQCEQQFSFHS--APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        50 ~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      ..+..+..+|.+.-.|..+++.+.......  ..+..-....+|+++.++.++.++.+|.++|+.+.+.....
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC
Confidence            345555788889889999888664433221  12222222337889999999999999998898888776554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.21  E-value=2.5  Score=28.64  Aligned_cols=77  Identities=12%  Similarity=0.104  Sum_probs=37.5

Q ss_pred             EEcCCCCEEEE-EeCCC--cEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          44 KWNKRGNYILS-AGVDK--TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        44 ~~~~~~~~~~s-~~~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      +|.++|+.++- +..+|  .+.+.|+.+++..+.-.+..........+|+++ ++-...+..+.-.|+++.+.-..+..+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            56778876554 44454  566778888876543322212222345567655 544455568888899988765555444


Q ss_pred             c
Q psy3840         120 T  120 (131)
Q Consensus       120 ~  120 (131)
                      .
T Consensus       122 ~  122 (386)
T PF14583_consen  122 D  122 (386)
T ss_dssp             T
T ss_pred             c
Confidence            3

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.10  E-value=1.2  Score=31.42  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=44.7

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA   67 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~   67 (131)
                      ...++++|+..|.|++||--|....+ +.+....|..+....+|..++..+.. .+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            45789999999999999966554433 45666788899999999987766554 56666654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.04  E-value=2.3  Score=27.80  Aligned_cols=97  Identities=12%  Similarity=0.189  Sum_probs=58.5

Q ss_pred             CCEEEEEeC----------CCeEEEEcCCCC-----ceeec--ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840           8 GSFLATGSY----------DGYARIWTSDGS-----LKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         8 ~~~l~~~~~----------d~~i~~~~~~~~-----~~~~~--~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      .+++++|..          .|.|.++++...     .+..+  ....++|.+++-- ++. ++.+ .++.+.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcc
Confidence            467777754          288999987642     23222  3356788888755 444 4433 34789999998777


Q ss_pred             -eeeeeec-CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840          71 -CEQQFSF-HSAPALDVDWQSNTSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        71 -~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~  108 (131)
                       ....-.. ....+.++....+ .++.|+....+.++..+
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEE
T ss_pred             cchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEE
Confidence             3332221 2335666665533 67788877777777543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.73  E-value=2.2  Score=27.02  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEc--CCCCce-eecc-ccc-ccEEEEEEcCCCCEEEEEe---CCCcEEEEECC---Cc--
Q psy3840           3 SSRNNGSFLATGSYDGYARIWT--SDGSLK-STLG-QHK-GPIFALKWNKRGNYILSAG---VDKTTIIWDAA---SG--   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~--~~~~~~-~~~~-~~~-~~i~~~~~~~~~~~~~s~~---~d~~i~~~d~~---~~--   69 (131)
                      +|++++...+....+...+++.  ..+... ..+. ... +.|..++++|||..++...   .++.+.+--+.   .+  
T Consensus        72 S~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~  151 (253)
T PF10647_consen   72 SWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP  151 (253)
T ss_pred             cccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc
Confidence            5778877666666566666663  222211 1111 111 2899999999999877654   35667765443   22  


Q ss_pred             c----eeeeeecCCCCeEEEEEcCCCcEEE
Q psy3840          70 Q----CEQQFSFHSAPALDVDWQSNTSFAS   95 (131)
Q Consensus        70 ~----~~~~~~~~~~~v~~~~~~~~~~~~~   95 (131)
                      .    ...........+..+.|.+++.|+.
T Consensus       152 ~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  152 RRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             ceeccceEecccccCcceeeeecCCCEEEE
Confidence            1    1111122345788999999988433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.58  E-value=2.6  Score=27.49  Aligned_cols=76  Identities=9%  Similarity=0.212  Sum_probs=54.8

Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-CCeEEEEEcCCCcEEEE-eCCCcEEEEeCCCC
Q psy3840          35 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALDVDWQSNTSFASC-STDQHIHVCKLHSD  110 (131)
Q Consensus        35 ~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~-~~d~~i~i~d~~~~  110 (131)
                      +-...+.++.|+|+.+.+++....+.-.++=-.+|+.+++++-.. .....+.|..+++++.+ -.++.++++.+...
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            444569999999999988888888877777777898888876322 23456777777775444 45677888776654

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=91.37  E-value=3.7  Score=28.76  Aligned_cols=113  Identities=14%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCceeecccccc---cEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCC
Q psy3840           5 RNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKG---PIFALKWNKRGNYILSAGV-------------DKTTIIWDAAS   68 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~s~~~-------------d~~i~~~d~~~   68 (131)
                      -++|.+++...  ..+..+|.-|+.+.....-.+   .=..+...|+|++++.+..             .-.|...| .+
T Consensus       156 l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~t  232 (477)
T PF05935_consen  156 LPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PT  232 (477)
T ss_dssp             -TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TT
T ss_pred             cCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CC
Confidence            45677776554  678888888876655432221   1245667788888776661             11244455 55


Q ss_pred             cceeeeeec--C---------------------C----CCeEEEEEcC-CCcEEEEeC-CCcEEEEeCCCCeeeEEEecc
Q psy3840          69 GQCEQQFSF--H---------------------S----APALDVDWQS-NTSFASCST-DQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        69 ~~~~~~~~~--~---------------------~----~~v~~~~~~~-~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      |+.+..+..  +                     .    ..+.++.+.+ ++.++..+. ...|...|.++++....+..+
T Consensus       233 G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  233 GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            554443210  0                     0    2378889988 456554444 458999998888888777655


Q ss_pred             c
Q psy3840         120 T  120 (131)
Q Consensus       120 ~  120 (131)
                      .
T Consensus       313 ~  313 (477)
T PF05935_consen  313 G  313 (477)
T ss_dssp             T
T ss_pred             C
Confidence            3

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.29  E-value=1.7  Score=24.80  Aligned_cols=111  Identities=10%  Similarity=-0.002  Sum_probs=67.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCC---------ceeecccccccEEEEEE---cC-C-CCEEEEEeCCCcEEEEECCCc
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGS---------LKSTLGQHKGPIFALKW---NK-R-GNYILSAGVDKTTIIWDAASG   69 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~---------~~~~~~~~~~~i~~~~~---~~-~-~~~~~s~~~d~~i~~~d~~~~   69 (131)
                      |.....-|++++.-+.|.+++....         .+. +..-...|++++-   .| + ...|+.| ....+..||+.+.
T Consensus         6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~-~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~N   83 (136)
T PF14781_consen    6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDIS-FLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVENN   83 (136)
T ss_pred             eCCCceeEEEEecCCEEEEECCCccccccccccCcee-EEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcccC
Confidence            4455567888889999999986521         112 2223456667653   33 2 2344444 5557889999876


Q ss_pred             ceeeeeecCCCCeEEEEEcC----CCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          70 QCEQQFSFHSAPALDVDWQS----NTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        70 ~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .-+..-. -...+.++.+-.    +..++..+.+..|+-||..-.+...+..
T Consensus        84 ~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt  134 (136)
T PF14781_consen   84 SDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT  134 (136)
T ss_pred             chhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence            5443222 235677776622    2337777778889999887666666543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.27  E-value=3.5  Score=28.84  Aligned_cols=106  Identities=13%  Similarity=0.055  Sum_probs=60.4

Q ss_pred             CCCEEEEEeCCCeEEEE-cCC---CCc---eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           7 NGSFLATGSYDGYARIW-TSD---GSL---KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~-~~~---~~~---~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      .|..+.+++.||-|.-| |..   +..   ++.++-...++..+.-..+.+.+++-+.+|++..+.....+.+-. ..-.
T Consensus       279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~  357 (733)
T COG4590         279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAY  357 (733)
T ss_pred             CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhh
Confidence            35667888899999887 443   111   111222223333332222445677777888888776544443322 1122


Q ss_pred             CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeee
Q psy3840          80 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      ....-++++|.+..+..-..+.++++.+++..+.
T Consensus       358 ~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         358 QAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPE  391 (733)
T ss_pred             cCcceeeeCcccchheeecCCceEEEEecCCCCC
Confidence            3556688899866444456678999988765443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.07  E-value=3  Score=27.23  Aligned_cols=105  Identities=9%  Similarity=0.109  Sum_probs=67.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEE-cCCCCceeecc--cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee-----
Q psy3840           3 SSRNNGSFLATGSYDGYARIW-TSDGSLKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-----   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~-~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~-----   74 (131)
                      .|+|+.+.|++..+...-.++ +.+|..+.+..  +.. ....+.+..+++++++-..++.+.++.+.....+..     
T Consensus        92 Tynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~  170 (316)
T COG3204          92 TYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQK  170 (316)
T ss_pred             eeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceE
Confidence            488988888887766654444 55677766543  222 234566777788888888899999887765422211     


Q ss_pred             -----eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          75 -----FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        75 -----~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                           ....+.....++|+|..+ +..+-...-+.||...
T Consensus       171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence                 112245678899999755 6666666656666544

>KOG4441|consensus

Probab=90.98  E-value=4.5  Score=29.08  Aligned_cols=104  Identities=11%  Similarity=0.140  Sum_probs=56.9

Q ss_pred             CCCEEEEEeCCCe-----EEEEcCCCCceeecccccccEEEEEEcC-CCCEEEEEeCCC------cEEEEECCCcc--ee
Q psy3840           7 NGSFLATGSYDGY-----ARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDK------TTIIWDAASGQ--CE   72 (131)
Q Consensus         7 ~~~~l~~~~~d~~-----i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~------~i~~~d~~~~~--~~   72 (131)
                      +|.+.++|+.||.     +..||....................... ++...+.|+.++      ++..||..+++  .+
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            5677888888874     6667766444433333333333333333 788888887554      45678877643  22


Q ss_pred             eeeecCCCCeEEEEEcCCCcEEEEeCCC-----cEEEEeCCCCe
Q psy3840          73 QQFSFHSAPALDVDWQSNTSFASCSTDQ-----HIHVCKLHSDK  111 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~  111 (131)
                      ..+...+.. ..++.-.+..++.|+.|+     .+..||.++.+
T Consensus       460 ~~M~~~R~~-~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  460 APMNTRRSG-FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             CCccccccc-ceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence            223222221 123333333367777665     26778877654

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.82  E-value=5.2  Score=29.84  Aligned_cols=74  Identities=11%  Similarity=0.136  Sum_probs=47.3

Q ss_pred             ccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcc-----eeeeeecC----------CCCeEEEEEcCCCc-EEEEeCCC
Q psy3840          38 GPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQ-----CEQQFSFH----------SAPALDVDWQSNTS-FASCSTDQ  100 (131)
Q Consensus        38 ~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~-----~~~~~~~~----------~~~v~~~~~~~~~~-~~~~~~d~  100 (131)
                      .+...++|+| +...+|..+..|...+|++....     ........          ...-..+.|.++.. ++.+ ...
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~-~r~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC-NRS  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE-cCC
Confidence            3677899999 67799999999999999992211     11111011          12233778877744 5554 445


Q ss_pred             cEEEEeCCCCee
Q psy3840         101 HIHVCKLHSDKP  112 (131)
Q Consensus       101 ~i~i~d~~~~~~  112 (131)
                      .+.++|+++...
T Consensus       225 ~l~~~d~~~~~~  236 (765)
T PF10214_consen  225 KLMLIDFESNWQ  236 (765)
T ss_pred             ceEEEECCCCCc
Confidence            678888886644

These proteins are found in fungi.

>KOG3630|consensus

Probab=90.81  E-value=1.7  Score=33.59  Aligned_cols=81  Identities=16%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             EEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec----CCCCeEEE
Q psy3840          11 LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----HSAPALDV   85 (131)
Q Consensus        11 l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~----~~~~v~~~   85 (131)
                      .++...|+.|++..+. ......-.......++++|+|.|.+++.|...|++.-|...- +....+.+    ....|.++
T Consensus       171 ~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v  249 (1405)
T KOG3630|consen  171 SAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSV  249 (1405)
T ss_pred             hhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEE
Confidence            3444556666666554 111111123445679999999999999999999998877542 22222221    14678899


Q ss_pred             EEcCCCc
Q psy3840          86 DWQSNTS   92 (131)
Q Consensus        86 ~~~~~~~   92 (131)
                      .|-....
T Consensus       250 ~Wl~t~e  256 (1405)
T KOG3630|consen  250 TWLSTQE  256 (1405)
T ss_pred             EEeccee
Confidence            9976644

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.40  E-value=3.6  Score=26.95  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=38.5

Q ss_pred             EEcCCCCEEEEEeCC-----CcEEEEECCCc-ceeeeeecCCCCeEEEEEcCCCc
Q psy3840          44 KWNKRGNYILSAGVD-----KTTIIWDAASG-QCEQQFSFHSAPALDVDWQSNTS   92 (131)
Q Consensus        44 ~~~~~~~~~~s~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~   92 (131)
                      .|+|+|.++.....|     |.|-+||.+.+ ..+..+..+.-....+.+.+||+
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGr  174 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGR  174 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCc
Confidence            689999998876543     66889999864 45567777777788899999988

>PHA03098 kelch-like protein; Provisional

Probab=90.15  E-value=5  Score=28.31  Aligned_cols=102  Identities=10%  Similarity=0.070  Sum_probs=47.0

Q ss_pred             CCCEEEEEeCCC-----eEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeCC------CcEEEEECCCcc--e
Q psy3840           7 NGSFLATGSYDG-----YARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVD------KTTIIWDAASGQ--C   71 (131)
Q Consensus         7 ~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~d------~~i~~~d~~~~~--~   71 (131)
                      ++..++.|+.++     .+..||..............+.  .+++ .-++..++.|+.+      ..+..||+.+.+  .
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            455666676542     3666776533332222111111  1111 2256666666632      357788877542  2


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEEEeCC--------CcEEEEeCCCCe
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FASCSTD--------QHIHVCKLHSDK  111 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d--------~~i~i~d~~~~~  111 (131)
                      +..++...... ++.. .+++ ++.|+.+        ..+.+||..+.+
T Consensus       421 ~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        421 GSPLPISHYGG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             cCCCCccccCc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            22222111111 2222 2445 5556542        237888887653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.09  E-value=4.8  Score=27.93  Aligned_cols=113  Identities=11%  Similarity=0.125  Sum_probs=53.7

Q ss_pred             CCCEEEEEe-CCCeEEEEcCCC-----Cceeeccc---cc----ccEEEEEEcCCCCEEEEEe------CCCcEEEEECC
Q psy3840           7 NGSFLATGS-YDGYARIWTSDG-----SLKSTLGQ---HK----GPIFALKWNKRGNYILSAG------VDKTTIIWDAA   67 (131)
Q Consensus         7 ~~~~l~~~~-~d~~i~~~~~~~-----~~~~~~~~---~~----~~i~~~~~~~~~~~~~s~~------~d~~i~~~d~~   67 (131)
                      +.++|+..+ .++.|.+.|+..     +..+.+..   +.    ..-..+..-|+|..++|+-      ..|.+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            455666655 688999999861     11122221   11    2223445567898888752      23457778877


Q ss_pred             CcceeeeeecCCC---CeEEEEEcCCCc-EEEEe--------------------CCCcEEEEeCCCCeeeEEEecc
Q psy3840          68 SGQCEQQFSFHSA---PALDVDWQSNTS-FASCS--------------------TDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        68 ~~~~~~~~~~~~~---~v~~~~~~~~~~-~~~~~--------------------~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      +.+....+.....   --..+.|.|... +++..                    ....+.+||+++.+.++++..-
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            7766666554322   234566677644 44432                    2467999999999999888643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3616|consensus

Probab=90.05  E-value=1.6  Score=32.36  Aligned_cols=67  Identities=12%  Similarity=0.189  Sum_probs=41.2

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEe
Q psy3840          38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCK  106 (131)
Q Consensus        38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d  106 (131)
                      ..+.++.-+|.++.++++..||++.+|+........... ...+-..+.|...| +++...|+.+.-|.
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg-l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG-LVTATSDRRALAWK   81 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc-eEEEeccchhheee
Confidence            456777878999999999999999999976543322221 11222334443333 55555555555553

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.95  E-value=4.3  Score=27.24  Aligned_cols=90  Identities=12%  Similarity=0.143  Sum_probs=45.4

Q ss_pred             cccCCCCEEEEEe-----------CCC-eEEEEc-CC--CCc--eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3840           3 SSRNNGSFLATGS-----------YDG-YARIWT-SD--GSL--KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD   65 (131)
Q Consensus         3 ~~~~~~~~l~~~~-----------~d~-~i~~~~-~~--~~~--~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d   65 (131)
                      +|.++|+++++-.           ..+ .|.+++ ..  |+.  ...+.........+++.+++ .++ +......++.|
T Consensus        20 a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d   97 (367)
T TIGR02604        20 CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDILFLRD   97 (367)
T ss_pred             eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEEEEeC
Confidence            4677788776643           223 666654 32  322  22222223345788888888 444 44443333434


Q ss_pred             CCC-c----c--ee-eeeecC----CCCeEEEEEcCCCcEE
Q psy3840          66 AAS-G----Q--CE-QQFSFH----SAPALDVDWQSNTSFA   94 (131)
Q Consensus        66 ~~~-~----~--~~-~~~~~~----~~~v~~~~~~~~~~~~   94 (131)
                      ... +    +  .+ ..+...    ......+.|.|++.|.
T Consensus        98 ~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LY  138 (367)
T TIGR02604        98 KDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLY  138 (367)
T ss_pred             CCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEE
Confidence            421 1    1  11 112221    2346788999998843

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4460|consensus

Probab=89.87  E-value=5.6  Score=28.39  Aligned_cols=75  Identities=11%  Similarity=0.228  Sum_probs=49.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEEC---------CCcceeeee---------ec--CCCCeEEEEEcCCC----cEE
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDA---------ASGQCEQQF---------SF--HSAPALDVDWQSNT----SFA   94 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~---------~~~~~~~~~---------~~--~~~~v~~~~~~~~~----~~~   94 (131)
                      .|..+..++.|..++-.+.+|.+.++-.         +.|+.....         ..  ..-.+...+|+|+.    .+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            3566778899999999888887654332         223322111         11  12245677899964    477


Q ss_pred             EEeCCCcEEEEeCCCCeee
Q psy3840          95 SCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        95 ~~~~d~~i~i~d~~~~~~~  113 (131)
                      .-..|+.+++||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            7889999999999866554

>PRK13684 Ycf48-like protein; Provisional

Probab=89.85  E-value=4.2  Score=26.97  Aligned_cols=97  Identities=10%  Similarity=0.130  Sum_probs=51.3

Q ss_pred             cCCCCEEEEEeCCCeEE-EEcCCCCceeec-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec----C
Q psy3840           5 RNNGSFLATGSYDGYAR-IWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----H   78 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~-~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~----~   78 (131)
                      .+++.+++++ ..|.+. .++-.++..... ..-...+..+.+.++++.++.+ ..|.+++=....+..-.....    .
T Consensus       181 ~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~  258 (334)
T PRK13684        181 SPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITN  258 (334)
T ss_pred             CCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCcccc
Confidence            3555555554 345433 222222222222 2233567888999988877765 456654322333332221111    1


Q ss_pred             CCCeEEEEEcCCCcEEEEeCCCcEE
Q psy3840          79 SAPALDVDWQSNTSFASCSTDQHIH  103 (131)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~d~~i~  103 (131)
                      ...+..+.+.|++.+..++.+|.+.
T Consensus       259 ~~~l~~v~~~~~~~~~~~G~~G~v~  283 (334)
T PRK13684        259 GYGYLDLAYRTPGEIWAGGGNGTLL  283 (334)
T ss_pred             ccceeeEEEcCCCCEEEEcCCCeEE
Confidence            2356788888887766666777654

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.58  E-value=1.9  Score=22.69  Aligned_cols=42  Identities=10%  Similarity=-0.027  Sum_probs=24.5

Q ss_pred             CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC
Q psy3840          16 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV   57 (131)
Q Consensus        16 ~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~   57 (131)
                      .+|.+.-||...+....+...-.....+++++++..++.+..
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            345566666665555444444445678888998887766643

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=89.49  E-value=7.7  Score=29.48  Aligned_cols=74  Identities=8%  Similarity=0.089  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCCceeec-ccccccEEEEEEcCCCCEEEE-EeCCC-----cEEEEECCC-cceeeeeecCCCCeEEEEEc
Q psy3840          17 DGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILS-AGVDK-----TTIIWDAAS-GQCEQQFSFHSAPALDVDWQ   88 (131)
Q Consensus        17 d~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~s-~~~d~-----~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~   88 (131)
                      .+.+.+-|..|.....+ ..+..++..-+|+|+|+.++- .+.++     .|++-|+.+ +..+..+......|..-...
T Consensus       328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~  407 (912)
T TIGR02171       328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL  407 (912)
T ss_pred             CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence            45777778776555545 556788999999999999887 43333     488888875 33334444444444444444


Q ss_pred             CC
Q psy3840          89 SN   90 (131)
Q Consensus        89 ~~   90 (131)
                      ++
T Consensus       408 e~  409 (912)
T TIGR02171       408 EN  409 (912)
T ss_pred             CC
Confidence            43

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=89.44  E-value=4.4  Score=26.54  Aligned_cols=68  Identities=19%  Similarity=0.331  Sum_probs=45.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-----eEEEEEcCCCcEE-EEeCCCcEEEEeC
Q psy3840          40 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-----ALDVDWQSNTSFA-SCSTDQHIHVCKL  107 (131)
Q Consensus        40 i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~-~~~~d~~i~i~d~  107 (131)
                      +.++...++|.+|+|.-.-..|.+.|.++++.+..+.+....     -...++..+-+++ .+..++.|.++|=
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            566777788999999988889999999999988888655211     1113333333332 2345566777765

>KOG2377|consensus

Probab=89.29  E-value=5.8  Score=27.81  Aligned_cols=87  Identities=7%  Similarity=-0.023  Sum_probs=55.7

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCce-----eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-cceeeeeec
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLK-----STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSF   77 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~-~~~~~~~~~   77 (131)
                      |++|++.+|+--.+.+|.+++..+...     .+.+..+..|....|..+... +-....| +-+|.+.. ...++....
T Consensus        74 FSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~-A~i~~~G-~e~y~v~pekrslRlVks  151 (657)
T KOG2377|consen   74 FSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEI-AFITDQG-IEFYQVLPEKRSLRLVKS  151 (657)
T ss_pred             eccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeE-EEEecCC-eEEEEEchhhhhhhhhhh
Confidence            799999999988899999999753221     222333455778888766443 3333333 55555443 233444455


Q ss_pred             CCCCeEEEEEcCCCc
Q psy3840          78 HSAPALDVDWQSNTS   92 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~   92 (131)
                      +...|.-..|+++..
T Consensus       152 ~~~nvnWy~yc~et~  166 (657)
T KOG2377|consen  152 HNLNVNWYMYCPETA  166 (657)
T ss_pred             cccCccEEEEccccc
Confidence            677888889999866

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.61  E-value=4.2  Score=25.26  Aligned_cols=99  Identities=12%  Similarity=0.205  Sum_probs=59.6

Q ss_pred             CEEEEEeCCCeEEEEcCC--C-CceeecccccccEEEEEEcCCCCEEEEEeCC---C---cEEE---EECC--Ccceee-
Q psy3840           9 SFLATGSYDGYARIWTSD--G-SLKSTLGQHKGPIFALKWNKRGNYILSAGVD---K---TTII---WDAA--SGQCEQ-   73 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d---~---~i~~---~d~~--~~~~~~-   73 (131)
                      +.|+.+.....|.+|++.  . +...++. --+.|..+.++..|.++++--.+   .   .+++   |+..  ...++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            566555667789999987  2 2333333 34789999999999999987543   2   3454   3332  111111 


Q ss_pred             eeec---------------------CCCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCC
Q psy3840          74 QFSF---------------------HSAPALDVDWQSN-TSFASCSTDQHIHVCKLHS  109 (131)
Q Consensus        74 ~~~~---------------------~~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~  109 (131)
                      .+-+                     -..++.+++.+|- |.++.|+. +.+.+|.++.
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEE
Confidence            1111                     1345677888775 66766654 5677887653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=88.41  E-value=7.7  Score=28.06  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=42.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCC-CcEEEEECCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVD-KTTIIWDAAS   68 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d-~~i~~~d~~~   68 (131)
                      |+|....|++-.....=-++++.  +..++.-..-.+.|.|.+|.+||+.++.+-.. =.-++||-..
T Consensus       120 WHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  120 WHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            78888888776554332345554  44444333556789999999999987776443 3456888543

>KOG3616|consensus

Probab=88.12  E-value=2.1  Score=31.84  Aligned_cols=59  Identities=15%  Similarity=0.272  Sum_probs=34.8

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3840           5 RNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD   65 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d   65 (131)
                      +|.++.++.+..||.|++|+...+....+-....|-..+.|..  ..+++...|+.+.-|.
T Consensus        23 hp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tn--hgl~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   23 HPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTN--HGLVTATSDRRALAWK   81 (1636)
T ss_pred             cCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeec--cceEEEeccchhheee
Confidence            5889999999999999999965322211111112223333432  2355666666666665

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=87.52  E-value=7.1  Score=26.63  Aligned_cols=85  Identities=12%  Similarity=0.019  Sum_probs=43.0

Q ss_pred             cccCCCCEEEEEeC-CCe--EEEEcCCCCceeecccccc-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           3 SSRNNGSFLATGSY-DGY--ARIWTSDGSLKSTLGQHKG-PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~--i~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      .|.++|++|+-++. +|.  +.+.|+....+..+....+ ......++|+.+.++-......++-.|+.+.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            57888977766555 665  4455666555555544332 2224556788887766656678888899988765555443


Q ss_pred             CCCeEEEEE
Q psy3840          79 SAPALDVDW   87 (131)
Q Consensus        79 ~~~v~~~~~   87 (131)
                      ..-.-...|
T Consensus       122 ~~~~g~gt~  130 (386)
T PF14583_consen  122 DDWKGYGTW  130 (386)
T ss_dssp             TTEEEEEEE
T ss_pred             cccccccce
Confidence            333333444

>KOG4441|consensus

Probab=87.48  E-value=8.8  Score=27.68  Aligned_cols=102  Identities=11%  Similarity=0.132  Sum_probs=53.2

Q ss_pred             CCCEEEEEeCC-C-----eEEEEcCCCCceeecccccccEEEEEEcC-CCCEEEEEeCCCc-----EEEEECCCcc--ee
Q psy3840           7 NGSFLATGSYD-G-----YARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKT-----TIIWDAASGQ--CE   72 (131)
Q Consensus         7 ~~~~l~~~~~d-~-----~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~-----i~~~d~~~~~--~~   72 (131)
                      ++...++|+.| |     ++..||..............+-....... +|...++|+.||.     +..||..+.+  .+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence            45677888888 3     46677776444333333332223333333 7888899988864     5567766532  22


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEeCC------CcEEEEeCCCC
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCSTD------QHIHVCKLHSD  110 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~d------~~i~i~d~~~~  110 (131)
                      ..+.......-..  .-+++ +++|+.+      ..+..||..+.
T Consensus       412 a~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  412 APMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETN  454 (571)
T ss_pred             CCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence            2222111111111  12455 5666644      34677877664

>KOG2280|consensus

Probab=87.03  E-value=8.7  Score=28.58  Aligned_cols=49  Identities=18%  Similarity=0.418  Sum_probs=36.2

Q ss_pred             eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840          19 YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus        19 ~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      .|++|+..|..+.++.-..+.+-.+-|+.+..+ +....+|++++|++..
T Consensus        65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEEL-ICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eEEEEeccccchHHHHhcCCCeeeecccCCceE-EEEeccceEEEeecch
Confidence            377888888777665444457889999876654 5556999999999753

>PHA03098 kelch-like protein; Provisional

Probab=87.02  E-value=8.7  Score=27.16  Aligned_cols=103  Identities=10%  Similarity=0.050  Sum_probs=47.9

Q ss_pred             CCCEEEEEeCC------CeEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeCCC--------cEEEEECCCcc
Q psy3840           7 NGSFLATGSYD------GYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVDK--------TTIIWDAASGQ   70 (131)
Q Consensus         7 ~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~d~--------~i~~~d~~~~~   70 (131)
                      ++.+.+.|+.+      ..+..||..............+.  .++ ...++..++.|+.+.        .+..||..+++
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            34555666531      34677776533322222111110  111 122556666665421        27788887643


Q ss_pred             --eeeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCee
Q psy3840          71 --CEQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDKP  112 (131)
Q Consensus        71 --~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~~  112 (131)
                        .+..+.........+..  +++ ++.|+.+     +.+.+||..+.+-
T Consensus       468 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        468 WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence              22222211111112222  555 5666543     4688999887653

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.99  E-value=6.8  Score=25.90  Aligned_cols=77  Identities=18%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             EEeCCCeEEEEcCCCCceeeccc--ccccEEEEEEcC------CCCEEEEEeCCCcEEEEECCCcceeeeeecCC-----
Q psy3840          13 TGSYDGYARIWTSDGSLKSTLGQ--HKGPIFALKWNK------RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-----   79 (131)
Q Consensus        13 ~~~~d~~i~~~~~~~~~~~~~~~--~~~~i~~~~~~~------~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-----   79 (131)
                      .|.--|.|-+||..|..++++..  .-..-+.|+..|      .+.+|+---.||+|..||..+++.+..+....     
T Consensus       217 ~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~  296 (336)
T TIGR03118       217 AGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVK  296 (336)
T ss_pred             cCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEE
Confidence            33445789999999988887632  233456777755      45666666679999999999988776665432     


Q ss_pred             -CCeEEEEEcC
Q psy3840          80 -APALDVDWQS   89 (131)
Q Consensus        80 -~~v~~~~~~~   89 (131)
                       ...+.+.|..
T Consensus       297 i~GLWgL~fGn  307 (336)
T TIGR03118       297 VDGLWSLTFGN  307 (336)
T ss_pred             ecCeEEeeeCC
Confidence             2356677744

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.11  E-value=5.2  Score=23.74  Aligned_cols=29  Identities=7%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCC-----Cc--EEEEeCCCcEEEEeCC
Q psy3840          80 APALDVDWQSN-----TS--FASCSTDQHIHVCKLH  108 (131)
Q Consensus        80 ~~v~~~~~~~~-----~~--~~~~~~d~~i~i~d~~  108 (131)
                      ..+..++|+|.     ++  |++.+.++.+.+|...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            37889999983     23  6788899999999866

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.02  E-value=13  Score=28.02  Aligned_cols=69  Identities=16%  Similarity=0.212  Sum_probs=48.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCcceeeeeecCCCC--------eEEEEEc-----------------CCCcEEEEeCCCcEE
Q psy3840          49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP--------ALDVDWQ-----------------SNTSFASCSTDQHIH  103 (131)
Q Consensus        49 ~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~~-----------------~~~~~~~~~~d~~i~  103 (131)
                      +..++.++.++.+.-.|..+|+.+..+......        ...+.+.                 .+++++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            556777778889999999999988776532210        1122221                 123577888899999


Q ss_pred             EEeCCCCeeeEEEe
Q psy3840         104 VCKLHSDKPVKSFE  117 (131)
Q Consensus       104 i~d~~~~~~~~~~~  117 (131)
                      -.|.++|+.+..+.
T Consensus       274 ALDA~TGk~~W~fg  287 (764)
T TIGR03074       274 ALDADTGKLCEDFG  287 (764)
T ss_pred             EEECCCCCEEEEec
Confidence            99999999887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=85.27  E-value=13  Score=27.52  Aligned_cols=70  Identities=6%  Similarity=0.011  Sum_probs=43.2

Q ss_pred             cEEEEEEcCCCCEEEEEeC-C----CcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-E-EEEeCC-----CcEEEEe
Q psy3840          39 PIFALKWNKRGNYILSAGV-D----KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-F-ASCSTD-----QHIHVCK  106 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~-d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-~~~~~d-----~~i~i~d  106 (131)
                      .+..+.++|++++++.+.. +    ..+++.|+.+++.+...... .. ..+.|.+++. + ++...+     ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4566788999998775432 2    35778899887643221111 11 4589998865 4 333322     3677888


Q ss_pred             CCCC
Q psy3840         107 LHSD  110 (131)
Q Consensus       107 ~~~~  110 (131)
                      +.++
T Consensus       206 lgt~  209 (686)
T PRK10115        206 IGTP  209 (686)
T ss_pred             CCCC
Confidence            8777

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=85.10  E-value=9.3  Score=25.70  Aligned_cols=58  Identities=12%  Similarity=0.196  Sum_probs=33.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCC-------------------CcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEe
Q psy3840          39 PIFALKWNKRGNYILSAGVD-------------------KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCS   97 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d-------------------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   97 (131)
                      ....++|.|+|.+.++-+..                   +.+.-++...++. ..+.........++|++++.+....
T Consensus       125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence            36688999999877765521                   2344444443332 2232222335678899888754443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.28  E-value=2.3  Score=18.05  Aligned_cols=27  Identities=4%  Similarity=0.198  Sum_probs=16.6

Q ss_pred             CCCeEEEEEcCCCc-E-EEEeCC--CcEEEE
Q psy3840          79 SAPALDVDWQSNTS-F-ASCSTD--QHIHVC  105 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~-~~~~~d--~~i~i~  105 (131)
                      ........|+|||+ + .++..+  +...||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            44567789999987 4 445555  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4460|consensus

Probab=84.21  E-value=13  Score=26.69  Aligned_cols=69  Identities=12%  Similarity=0.079  Sum_probs=44.2

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC----------CCceeecc---------cc--cccEEEEEEcCC---CCEEEEEeCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD----------GSLKSTLG---------QH--KGPIFALKWNKR---GNYILSAGVDK   59 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~----------~~~~~~~~---------~~--~~~i~~~~~~~~---~~~~~s~~~d~   59 (131)
                      .++.|..++-.+.+|.+-++-..          |+.+....         ..  .-.+...+|+|+   ...+..-..|.
T Consensus       111 ~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdn  190 (741)
T KOG4460|consen  111 LSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDN  190 (741)
T ss_pred             ecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCc
Confidence            47788889888889976554311          32221111         01  113456789995   46788888999


Q ss_pred             cEEEEECCCccee
Q psy3840          60 TTIIWDAASGQCE   72 (131)
Q Consensus        60 ~i~~~d~~~~~~~   72 (131)
                      .+++||+.+...+
T Consensus       191 viRiy~lS~~tel  203 (741)
T KOG4460|consen  191 VIRIYSLSEPTEL  203 (741)
T ss_pred             EEEEEecCCcchh
Confidence            9999998765433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=84.02  E-value=5.3  Score=26.47  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=34.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCce----eecccccccEEEEEEcCCCCEEEEEeCCCcEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLK----STLGQHKGPIFALKWNKRGNYILSAGVDKTTI   62 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~----~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~   62 (131)
                      .+.++++.-..+.|....+. +..+    ..+......+..+++.|+|.++++.+.+|.|+
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            34555555545566665554 2111    12233444789999999999999888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=82.41  E-value=2.4  Score=16.94  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=15.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWT   24 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~   24 (131)
                      +......+++++...+-+|+|+
T Consensus         6 aia~g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    6 AIAAGDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             EEEccCCEEEEEeCCCeEEecC
Confidence            3444567888888888888874

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=82.12  E-value=3.1  Score=17.87  Aligned_cols=20  Identities=5%  Similarity=-0.022  Sum_probs=15.2

Q ss_pred             CCcEEEEeCCCcEEEEeCCC
Q psy3840          90 NTSFASCSTDQHIHVCKLHS  109 (131)
Q Consensus        90 ~~~~~~~~~d~~i~i~d~~~  109 (131)
                      ++.++.++.|+.++.+|.++
T Consensus        21 ~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   21 GGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             TSEEEEE-TTSEEEEEETT-
T ss_pred             CCEEEEEcCCCEEEEEeCCC
Confidence            56788888999999998764

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.85  E-value=14  Score=25.27  Aligned_cols=120  Identities=11%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEc----CCCCE--E-EEEeCC---CcEEEEECC--Ccceee
Q psy3840           6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWN----KRGNY--I-LSAGVD---KTTIIWDAA--SGQCEQ   73 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--~-~s~~~d---~~i~~~d~~--~~~~~~   73 (131)
                      |...+++....++-+.+||+.|+.+..+..  +....+...    -.++.  + +....+   .+|++|.+.  ++. +.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence            455677777788889999999998877642  233333321    13432  3 333333   468888765  332 22


Q ss_pred             eee-------cCCCCeEEEEE--cC-CCc--EEEEeCCCcEEEEeCC---CC----eeeEEEecccceEEEEee
Q psy3840          74 QFS-------FHSAPALDVDW--QS-NTS--FASCSTDQHIHVCKLH---SD----KPVKSFEGHTRVYYLAMD  128 (131)
Q Consensus        74 ~~~-------~~~~~v~~~~~--~~-~~~--~~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~~  128 (131)
                      .+.       .....++.++.  ++ ++.  .+....+|.+..|.+.   .+    +.++++....+.-.++.|
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVD  216 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVD  216 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEe
Confidence            222       11233555654  44 354  4556778888877764   23    467777765555555544

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PHA02790 Kelch-like protein; Provisional

Probab=81.64  E-value=16  Score=25.72  Aligned_cols=100  Identities=7%  Similarity=-0.039  Sum_probs=44.5

Q ss_pred             CCCEEEEEeCCC---eEEEEcCCCCceeecccccccEEE-EEEcCCCCEEEEEeCCCcEEEEECCCcc--eeeeeecCCC
Q psy3840           7 NGSFLATGSYDG---YARIWTSDGSLKSTLGQHKGPIFA-LKWNKRGNYILSAGVDKTTIIWDAASGQ--CEQQFSFHSA   80 (131)
Q Consensus         7 ~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~s~~~d~~i~~~d~~~~~--~~~~~~~~~~   80 (131)
                      ++.+.+.|+.++   .+..||..............+... ....-++..++.|+   ....||..+++  .+..+.....
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~  438 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD  438 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc
Confidence            455556666443   355677653332222111111111 11123556666653   46678876532  2222222222


Q ss_pred             CeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840          81 PALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK  111 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~  111 (131)
                      .. .++.. +++ ++.||.+     ..+..||..+.+
T Consensus       439 ~~-~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        439 NP-ELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             cc-EEEEE-CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            22 22222 445 5667654     346677776554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=81.60  E-value=16  Score=25.75  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC---eEEEEEcCCCc
Q psy3840          16 YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP---ALDVDWQSNTS   92 (131)
Q Consensus        16 ~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~---v~~~~~~~~~~   92 (131)
                      ......++|.+|..+..+.........+...++|.+++...  ..++.+|+. |+.+..+......   =..+...|+|.
T Consensus       126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn  202 (477)
T PF05935_consen  126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN  202 (477)
T ss_dssp             BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred             CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence            34557777877777665544332222256678888877655  677778864 5554444322211   23455667776


Q ss_pred             -EEEEeC-------------CCcEEEEeCCCCeeeEEEe
Q psy3840          93 -FASCST-------------DQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        93 -~~~~~~-------------d~~i~i~d~~~~~~~~~~~  117 (131)
                       |+.+..             ...|...| ++|+.+..+.
T Consensus       203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd  240 (477)
T PF05935_consen  203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWD  240 (477)
T ss_dssp             EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEE
T ss_pred             EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEe
Confidence             444431             12355566 6676666654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-13
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-10
2h9l_A	329	Wdr5delta23 Length = 329		2e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-08
3mmy_A	368	Structural And Functional Analysis Of The Interacti		5e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-07
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		5e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		5e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		8e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-04

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
           +G+ + TG  +G  R+W   G+L + L  H+ PI ++KWNK G +I+S  V+  TI+W+ 
Sbjct: 119 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178
Query: 67  ASGQCEQQFSF------------HSAP---ALDVDWQSNTSFASCSTDQHIHVCKLHSDK 111
            SG   Q F              HS      +DV+W  +  F        I V ++    
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT 238
Query: 112 PVKSFEGH 119
           P     GH
Sbjct: 239 PTGKLIGH 246

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
            V
Sbjct: 283 DV 284

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
            V
Sbjct: 283 DV 284

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 237 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 296
Query: 121 RV 122
            V
Sbjct: 297 DV 298

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
            V
Sbjct: 283 DV 284

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
            V
Sbjct: 283 DV 284

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 216 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 275
Query: 121 RV 122
            V
Sbjct: 276 DV 277

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 219 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 278
Query: 121 RV 122
            V
Sbjct: 279 DV 280

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 221 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 280
Query: 121 RV 122
            V
Sbjct: 281 DV 282

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 225 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 284
Query: 121 RV 122
            V
Sbjct: 285 DV 286

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 121 RV 122
            V
Sbjct: 280 DV 281

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279
Query: 121 RV 122
            V
Sbjct: 280 DV 281

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 121 RV 122
            V
Sbjct: 286 DV 287

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 121 RV 122
            V
Sbjct: 286 DV 287

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 121 RV 122
            V
Sbjct: 286 DV 287

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 244 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 303
Query: 121 RV 122
            V
Sbjct: 304 DV 305

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D T  +W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 242 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 301
Query: 121 RV 122
            V
Sbjct: 302 DV 303

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 7   NGSFLATGSYDGYARIW-TSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +GS + + SYDG  RIW T+ G  LK+ +     P+  +K++  G YIL+A +D    +W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           D + G+C + ++ H      +    + +      S S D  +++  L + + V+  +GHT
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 121 RV 122
            V
Sbjct: 283 DV 284

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 11  LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTIIWDAA 67
           + T S DG   +W    G L  +   H   +  L    ++ GN  +S G DK  ++WD  
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 68  SGQCEQQFSFHSAPALDVD-WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVY 123
           SGQC Q F  H +    V  + S  +FAS S D    +  L +D+ V  +   + ++
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 8   GSFLATGSYDGYARIWT---SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           G+FL  GS+    R W    S  ++      H GP+  + W+  G+ + +A  DKT  +W
Sbjct: 54  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTSFASCST---DQHIHVCKLHSDKPVKSFEGHTR 121
           D +S Q   Q + H AP   + W    +++   T   D+ +      S  P+   +   R
Sbjct: 114 DLSSNQA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER 172
Query: 122 VY 123
            Y
Sbjct: 173 CY 174

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 4   SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ-------HKGPIFALKWNKRGNYILSA 55
           S  +G ++A GS D   R+W S+ G L   L         HK  ++++ + + G  ++S 
Sbjct: 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274
Query: 56  GVDKTTIIWD------------AASGQCEQQFSFHSAPALDVDWQSNTSFA-SCSTDQHI 102
            +D++  +W+              SG CE  +  H    L V    N  +  S S D+ +
Sbjct: 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334
Query: 103 HVCKLHSDKPVKSFEGH 119
                 S  P+   +GH
Sbjct: 335 LFWDKKSGNPLLMLQGH 351

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 8   GSFLATGSYDGYARIWTSDGS---LKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTII 63
           G+ LA+   D   RIW ++G     KS L + H+  +  + W+  GNY+ SA  D TT I
Sbjct: 28  GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 64  WDAASG--QCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSD---KPVKSFE 117
           W       +C      H      V W  S    A+CS D+ + V ++  +   + V    
Sbjct: 88  WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 118 GHTR-----VYYLAMDLL 130
            HT+     V++ + +LL
Sbjct: 148 SHTQDVKHVVWHPSQELL 165

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 6   NNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           ++G  LA+ S D   ++W   G     T+  H   + ++     G++I+SA  DKT  +W
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 65  DAASGQCEQQFSFHSAPALDVDW-------QSNTSFASCSTDQHIHV 104
           +  +G C + F+ H       +W       Q  T  ASCS DQ + V
Sbjct: 220 EVQTGYCVKTFTGHR------EWVRMVRPNQDGTLIASCSNDQTVRV 260

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 9   SFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
           +++ TG+ D   R++ S +      L  H G ++ALK+   G  ++S   D+T  +WD  
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 68  SGQCEQQFSFHSAPA--LD-VDWQSNTSFASCSTDQHIHVCKLHSDKPV 113
            G C   F  H++    LD V++++     + S D  +HV KL  +  V
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 9   SFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
           +++ TG+ D   R++ S +      L  H G ++ALK+   G  ++S   D+T  +WD  
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIK 191
Query: 68  SGQCEQQFSFHSAPA--LD-VDWQSNTSFASCSTDQHIHVCKLHSDKPV 113
            G C   F  H++    LD V++++     + S D  +HV KL  +  V
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10  FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 69
           + A+  +DG  ++W ++  ++ T   H+  +  L  +  G YI + G DK  +IWD  + 
Sbjct: 186 YFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245
Query: 70  QCEQQFSFHSAPALD-VDWQSNTSFASCSTDQHIHVCKL--HSDKPVKSFEGH 119
              Q+  F +   ++ + +     + +  TDQ + +  L   S  PV + E  
Sbjct: 246 TYPQR-EFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAE 297

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 5   RNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           R +G  +A+ S D   ++W  +G L  TL  H   ++ + ++  G  I SA  DKT  +W
Sbjct: 271 RPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 65  DAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
           +  +GQ  Q  + HS+    V +  +  + AS S D+ + +    + + +++  GH+
Sbjct: 331 N-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 385

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 5   RNNGSFLATGSYDGYARIWTSDGS--------LKSTLGQHKGPIFALKWNKRGNYILSAG 56
           R + S LA GS+D    IW  + S        L + +  H+  +  + W+  G Y+ +  
Sbjct: 67  RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126
Query: 57  VDKTTIIWDA-ASG---QCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSD- 110
            DK+  IW+   SG   +C      HS     V W  S    AS S D  + + K + D 
Sbjct: 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186
Query: 111 -KPVKSFEGH 119
            + V    GH
Sbjct: 187 WECVAVLNGH 196

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 10  FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAAS 68
            + +GS+D  A++W  +GSL   L  H   ++  K      N  L+A  DKT  +W   +
Sbjct: 116 VVISGSWDKTAKVW-KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--QN 172
Query: 69  GQCEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
            +  + FS  H+     +    +  F SCS D  I +   H+   ++++EGH    Y
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 3   SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI 62
           S+  +G+ +     DG       D SLK+    H G +F L W+  G  I SA  DKT  
Sbjct: 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNV--AHSGSVFGLTWSPDGTKIASASADKTIK 264
Query: 63  IWDAASGQCEQQF 75
           IW+ A+ + E+  
Sbjct: 265 IWNVATLKVEKTI 277

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 32  TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 91
           TL  H G +++L W    N+I+SA  D   I+W+A + Q       H    ++  +  N 
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 92  SFASC 96
              +C
Sbjct: 121 QSVAC 125

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 3   SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 61
           SS+   + + +GS D   ++W ++ G    TL  H   +  +  +++   ++S   D T 
Sbjct: 164 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATL 221
Query: 62  IIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT- 120
            +WD  +GQC      H A    V +       S + D  + V    ++  + + +GHT 
Sbjct: 222 RVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTN 280
Query: 121 RVYYLAMD 128
           RVY L  D
Sbjct: 281 RVYSLQFD 288

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 7   NGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
           +G  L + S D   +IW+  DGS   TL  H+  +  +    RG  +LSA +D T  +W+
Sbjct: 147 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Query: 66  AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 103
             +G     F+    P   V    N+      TD+ +H
Sbjct: 207 CGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 240

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 7   NGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
           +G  L + S D   +IW+  DGS   TL  H+  +  +    RG  +LSA +D T  +W+
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Query: 66  AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 103
             +G     F+    P   V    N+      TD+ +H
Sbjct: 210 CGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 243

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 11  LATGSYDGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 69
           + +G  D   +IW  +    K  L  H G +  L++++R   I++   D T  +WD  +G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTG 203
Query: 70  QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 109
           +       H    L + + +N    +CS D+ I V  + S
Sbjct: 204 EMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRSIAVWDMAS 242

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 31  STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE----QQFSFHSAPALDV- 85
           +TL  H   +  L+W   G ++ S G D    +W +A G+      Q F+ H      V 
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 86  --DWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
              WQSN  +    ++D+HI +  + S   + + + H++V
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.92
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.91
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.91
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.91
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
2pm7_B	297	Protein transport protein SEC13, protein transport	99.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.9
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.9
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.89
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.89
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.89
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.89
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.89
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.88
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.88
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.88
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.88
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.88
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.88
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.88
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.88
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.88
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.88
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.88
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.87
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.87
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.87
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.87
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.87
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.87
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.87
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.87
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.87
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.86
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.86
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.85
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.85
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.85
3jro_A	753	Fusion protein of protein transport protein SEC13	99.85
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.85
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.84
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.84
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.84
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.83
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.77
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.76
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.73
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.71
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.68
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.64
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.62
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.62
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.61
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.61
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.61
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.58
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.58
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.57
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.55
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.55
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.53
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.51
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.51
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.51
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.5
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.5
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.5
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.49
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.48
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.48
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.47
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.47
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.47
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.47
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.45
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.43
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.43
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.43
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.43
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.42
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.41
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.38
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.37
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.34
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.34
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.34
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.3
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.29
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.29
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.29
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.28
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.26
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.23
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.2
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.19
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.18
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.17
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.17
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.16
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.15
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.12
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.1
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.1
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.09
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.07
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.07
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.02
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.0
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.99
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.92
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.92
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.91
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.9
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.87
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.86
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.84
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.83
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.83
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.81
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.8
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.79
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.71
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.69
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.68
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.64
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.6
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.56
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.55
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.52
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.49
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.48
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.44
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.37
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.36
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.36
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.36
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.32
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.32
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.23
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.18
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.15
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.11
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.08
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.04
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.95
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.94
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.91
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.87
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.83
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.81
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.78
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.77
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.74
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.54
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.53
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.52
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.47
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.45
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.24
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.24
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.18
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.13
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.03
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.92
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.81
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.62
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.59
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.45
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.42
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.37
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.35
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.35
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.3
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.21
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.2
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.17
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.06
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.95
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.88
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.88
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.8
2p4o_A	306	Hypothetical protein; putative lactonase, structur	95.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.64
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.63
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.58
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.49
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.42
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.21
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.12
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.12
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.97
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.95
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.79
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.55
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.39
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	93.88
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.74
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.51
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.13
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.94
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.74
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.25
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.97
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.92
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	90.81
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.71
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.71
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.16
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	89.93
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.02
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.73
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.64
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.49
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	88.2
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	88.15
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	87.58
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.52
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	87.24
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.56
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	86.31
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	85.58
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	85.57
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	85.56
3ott_A	758	Two-component system sensor histidine kinase; beta	85.47
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	84.97
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	84.87
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.23
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	84.08
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	83.96
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	82.7

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=8.3e-28  Score=152.32  Aligned_cols=123  Identities=25%  Similarity=0.394  Sum_probs=114.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|++++|++|+.|+.|++||+. ++.+..+.+|..+|.+++|+|+++++++++.|+.|++||+++++....+.+|...
T Consensus       171 ~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~  250 (321)
T 3ow8_A          171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW  250 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence            478999999999999999999987 7778888999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      |.+++|+|++. +++++.|+.|++||+++++++.++.+|...+..
T Consensus       251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~  295 (321)
T 3ow8_A          251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG  295 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEE
Confidence            99999999977 899999999999999999999999988877654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=3e-27  Score=148.63  Aligned_cols=124  Identities=17%  Similarity=0.274  Sum_probs=112.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|+++++++|+.||+|++||+. +..+..+..|..++.+++|+|+++++++++.|+.|++||+.+++.+..+..|...
T Consensus        20 ~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~   99 (304)
T 2ynn_A           20 DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY   99 (304)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc
Confidence            589999999999999999999987 6777888899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~  126 (131)
                      |.+++|+|++. +++++.|+.|++||++++ .....+.+|...+..+
T Consensus       100 v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v  146 (304)
T 2ynn_A          100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred             EEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence            99999999976 899999999999999887 5556778887766543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=4.6e-27  Score=153.11  Aligned_cols=124  Identities=22%  Similarity=0.369  Sum_probs=115.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|+|++.++++|+.|++|++||+. ++....+.+|.+.|.+++|+|+++++++++.|++|++||+.+++++..+.+|...
T Consensus       115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~  194 (410)
T 1vyh_C          115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN  194 (410)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Confidence            478999999999999999999987 7778889999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |.+++|+|++. +++++.|+.|++||++++.++..+.+|...+..+
T Consensus       195 V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~  240 (410)
T 1vyh_C          195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV  240 (410)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence            99999999976 8999999999999999999999999988766543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=1.2e-25  Score=141.37  Aligned_cols=123  Identities=28%  Similarity=0.476  Sum_probs=113.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|+++++++|+.|+.|++|+.. ++....+.+|...|.+++|+|+++++++++.|+.+++||+++++.+..+..|...
T Consensus        30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  109 (312)
T 4ery_A           30 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY  109 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC
Confidence            478999999999999999999986 7777888899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      +.++.|+|++. +++++.|+.|++||+++++++..+..|...+..
T Consensus       110 v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  154 (312)
T 4ery_A          110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA  154 (312)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence            99999999976 899999999999999999999999888776544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=7.4e-26  Score=143.38  Aligned_cols=123  Identities=20%  Similarity=0.367  Sum_probs=113.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|+++++++|+.++.|++|++. ++....+..|...+.+++|+|+++++++++.|+.+++||+++++.+..+..|..+
T Consensus       129 ~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~  208 (321)
T 3ow8_A          129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP  208 (321)
T ss_dssp             EECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc
Confidence            479999999999999999999987 6677778888899999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      +.+++|+|++. +++++.|+.|++||+++++.+..+.+|...+..
T Consensus       209 v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~  253 (321)
T 3ow8_A          209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN  253 (321)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEE
Confidence            99999999987 899999999999999999999999998876644

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=1e-25  Score=146.82  Aligned_cols=124  Identities=25%  Similarity=0.339  Sum_probs=114.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|++++|++|+.|++|++||+. ++.+..+.+|...|.+++|+|++..+++++.|+++++||++++.++..+.+|...
T Consensus       157 ~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~  236 (410)
T 1vyh_C          157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW  236 (410)
T ss_dssp             EECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence            478999999999999999999987 6777888999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      +.++.++|++. +++++.|+.|++||++++++...+..|...+..+
T Consensus       237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~  282 (410)
T 1vyh_C          237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI  282 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE
Confidence            99999999987 8999999999999999999999998888766543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=1.7e-25  Score=143.07  Aligned_cols=124  Identities=16%  Similarity=0.239  Sum_probs=106.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcceeeeee--cC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFS--FH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~~~~~--~~   78 (131)
                      +|+|++++|++|+.|++|++||+. ++.+..+.+|.+.|.+++|+|++ ..+++++.|++|++||+++++....+.  .+
T Consensus       134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  213 (344)
T 4gqb_B          134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP  213 (344)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee
Confidence            479999999999999999999987 77888899999999999999977 578999999999999999998877764  34


Q ss_pred             CCCeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          79 SAPALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        79 ~~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ...+.+++|+|+ +. +++++.|+.|++||+++++++.++.+|...+..+
T Consensus       214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v  263 (344)
T 4gqb_B          214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL  263 (344)
T ss_dssp             CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred             eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            457899999996 44 7889999999999999999999999998877554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.6e-25  Score=142.20  Aligned_cols=123  Identities=26%  Similarity=0.507  Sum_probs=102.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc----c
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG----Q   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~----~   70 (131)
                      +|+|++++|++|+.|++|++|+..        .+.+..+.+|.+.|.+++|+|+++++++++.|+++++||++..    +
T Consensus        65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~  144 (330)
T 2hes_X           65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE  144 (330)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred             EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence            478999999999999999999974        2345677899999999999999999999999999999999532    4


Q ss_pred             eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC--eeeEEEecccceEEE
Q psy3840          71 CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD--KPVKSFEGHTRVYYL  125 (131)
Q Consensus        71 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~  125 (131)
                      .+..+..|...|.+++|+|++. +++++.|+.|++||.+++  +++..+.+|...+..
T Consensus       145 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~  202 (330)
T 2hes_X          145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS  202 (330)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             EEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence            5667788999999999999976 899999999999999876  678888888876644

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.94  E-value=3.6e-25  Score=141.01  Aligned_cols=124  Identities=18%  Similarity=0.243  Sum_probs=110.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC--C
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--S   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~--~   79 (131)
                      +|+|+++++++|+.|+.|++||+. +.....+.+|...|.+++|+|+++++++++.|+.+++||+++++.+..+...  .
T Consensus       191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~  270 (340)
T 1got_B          191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII  270 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc
Confidence            478999999999999999999987 7778888999999999999999999999999999999999998877666532  3


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ..+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...+..+
T Consensus       271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  318 (340)
T 1got_B          271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEE
Confidence            4799999999987 8999999999999999999999999998877543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=1.2e-24  Score=137.57  Aligned_cols=125  Identities=24%  Similarity=0.332  Sum_probs=112.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCC------CCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR------GNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      +|+|++.++++|+.|++|++||+.+..+..+.+|...+.++.++|.      +..+++++.|+.+++||+++.+....+.
T Consensus       114 ~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  193 (319)
T 3frx_A          114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI  193 (319)
T ss_dssp             EECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec
Confidence            4789999999999999999999998888899999999999999984      4489999999999999999999888899


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  127 (131)
                      +|...+.+++|+|++. +++++.|+.|++||+++++++..+..+......++
T Consensus       194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  245 (319)
T 3frx_A          194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF  245 (319)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEE
Confidence            9999999999999987 89999999999999999999998887665444443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=4.5e-25  Score=140.86  Aligned_cols=123  Identities=26%  Similarity=0.487  Sum_probs=104.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCc----eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--ceeeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSL----KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--QCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~--~~~~~~~   76 (131)
                      +|+|++++|++|+.|++|++||+.+..    .....+|...|.+++|+|+++++++++.|+.+++||+..+  +.+..+.
T Consensus        23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  102 (345)
T 3fm0_A           23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE  102 (345)
T ss_dssp             EECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence            589999999999999999999987432    1233679999999999999999999999999999998876  4567788


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC---eeeEEEecccceEEE
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD---KPVKSFEGHTRVYYL  125 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~  125 (131)
                      +|...|.+++|+|++. +++++.|+.|++||++++   +++..+..|...+..
T Consensus       103 ~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~  155 (345)
T 3fm0_A          103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH  155 (345)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred             CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence            8999999999999987 899999999999999876   345666777766543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=2.9e-25  Score=141.92  Aligned_cols=114  Identities=19%  Similarity=0.254  Sum_probs=100.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCcee----ecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKS----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~----~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      +|+++ +.+++|+.||+|++||+. ++...    ...+|.+.|.+++|+|+++++++++.|++|++||+++++.+..+.+
T Consensus        89 ~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~  167 (344)
T 4gqb_B           89 TWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA  167 (344)
T ss_dssp             EEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence            36776 578899999999999987 44332    3457999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          78 HSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      |...|.+++|+|++.  +++++.|+.|++||+++++++..+.
T Consensus       168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  209 (344)
T 4gqb_B          168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG  209 (344)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC
T ss_pred             cCCceEEEEecCCCCCceeeeccccccccccccccceeeeee
Confidence            999999999999864  7899999999999999998877764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=5.1e-25  Score=138.46  Aligned_cols=115  Identities=23%  Similarity=0.303  Sum_probs=102.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-ceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-~~~~~~~~~~~   80 (131)
                      .|+|++++|++|+.|++|++||+. ++.+..+.+|.+.|.+++|+|+++++++++.|+++++||++++ .....+.+|..
T Consensus        62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (304)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred             EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence            478899999999999999999987 7888889999999999999999999999999999999999887 44566778999


Q ss_pred             CeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          81 PALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        81 ~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .|.+++|+|+ +. +++++.|+.|++||++++.+...+.
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~  180 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT  180 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec
Confidence            9999999994 55 8999999999999998876655554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=3.1e-25  Score=144.05  Aligned_cols=117  Identities=18%  Similarity=0.261  Sum_probs=108.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      ++++++++|++|+.|+.|++||+. ++....+.+|.+.|.+++|+|+++++++++.|+.+++||+++++.+..+..|...
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  183 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT  183 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc
Confidence            578999999999999999999987 5556666799999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      |.+++|+|++. +++++.|+.|++||+++++.+..+..|
T Consensus       184 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~  222 (420)
T 3vl1_A          184 VTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK  222 (420)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecC
Confidence            99999999977 899999999999999999999988754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=5.9e-25  Score=139.02  Aligned_cols=122  Identities=25%  Similarity=0.352  Sum_probs=107.3

Q ss_pred             cccCC-CCEEEEEeCCCeEEEEcCC------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840           3 SSRNN-GSFLATGSYDGYARIWTSD------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         3 ~~~~~-~~~l~~~~~d~~i~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      +|+|+ +++|++|+.|++|++|++.      +.++..+.+|...|.+++|+|+++++++++.|++|++||+++++.+..+
T Consensus        24 ~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~  103 (319)
T 3frx_A           24 ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF  103 (319)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE
Confidence            35664 4899999999999999975      2346678899999999999999999999999999999999999999999


Q ss_pred             ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          76 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      .+|...|.+++|+|++. +++++.|+.|++||++ ++++..+.+|...+..
T Consensus       104 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~  153 (319)
T 3frx_A          104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ  153 (319)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred             ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEE
Confidence            99999999999999976 8999999999999997 5677777777765543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=3.4e-24  Score=134.76  Aligned_cols=115  Identities=26%  Similarity=0.455  Sum_probs=106.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|++++|++|+.|+.|++||+. ++.+..+.+|...+.+++|+|+++++++++.|+.+++||+++++.+..+..|..+
T Consensus        72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  151 (312)
T 4ery_A           72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP  151 (312)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence            478999999999999999999987 7778888999999999999999999999999999999999999999999989999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +.+++|+|++. +++++.|+.|++||+++++.+..+.
T Consensus       152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  188 (312)
T 4ery_A          152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI  188 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe
Confidence            99999999977 8999999999999999998877764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=2.5e-24  Score=144.56  Aligned_cols=122  Identities=24%  Similarity=0.411  Sum_probs=112.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      +|+|+++++++++.|+.|++||..++.+..+.+|...+.+++|+|+++++++++.|+.|++||. +++.+..+..|...|
T Consensus       433 ~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v  511 (577)
T 2ymu_A          433 AFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  511 (577)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE
Confidence            4789999999999999999999988888999999999999999999999999999999999994 678888999999999


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .+++|+|+++ |++++.|+.|++||. +++++..+.+|...+..+
T Consensus       512 ~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~  555 (577)
T 2ymu_A          512 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV  555 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred             EEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEE
Confidence            9999999987 899999999999995 688999999998877543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.93  E-value=3.4e-24  Score=136.56  Aligned_cols=124  Identities=16%  Similarity=0.280  Sum_probs=111.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc----eeeeeec
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ----CEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~----~~~~~~~   77 (131)
                      .|+|++++|++|+.|++|++||.. ++.+..+..|...+.+++|+|+++++++++.|+.+++|++.+.+    ....+.+
T Consensus        62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~  141 (340)
T 1got_B           62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG  141 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC
Confidence            478999999999999999999986 77778888899999999999999999999999999999998753    4456778


Q ss_pred             CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          78 HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |...+.++.|++++.+++++.|+.|++||+++++++..+.+|...+..+
T Consensus       142 h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  190 (340)
T 1got_B          142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence            8899999999999899999999999999999999999999888766543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=2.2e-24  Score=137.68  Aligned_cols=123  Identities=23%  Similarity=0.492  Sum_probs=106.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC---CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc---eeeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG---SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ---CEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~---~~~~~~   76 (131)
                      +|+|++++|++|+.|+++++|+...   +.+..+.+|.+.|.+++|+|+++++++++.|+.+++||++++.   .+..+.
T Consensus        68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  147 (345)
T 3fm0_A           68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN  147 (345)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred             EECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec
Confidence            4799999999999999999999763   3467788999999999999999999999999999999998753   355677


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe--eeEEEecccceEEE
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTRVYYL  125 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~  125 (131)
                      .|...+.+++|+|++. +++++.|+.|++||+++++  +...+.+|...+..
T Consensus       148 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~  199 (345)
T 3fm0_A          148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS  199 (345)
T ss_dssp             CCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             CcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEE
Confidence            7888999999999977 9999999999999998875  45677888776644

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=5e-24  Score=136.55  Aligned_cols=117  Identities=30%  Similarity=0.516  Sum_probs=106.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +|+|++..|++++.|++|++||+. ++.+..+.+|...+.+++++|  +++.+++++.|+.+++||+++++++..+..|.
T Consensus       161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~  240 (354)
T 2pbi_B          161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE  240 (354)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            478899999999999999999987 778888999999999999988  56899999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ..|.+++|+|++. +++++.|+.|++||+++++.+..+..+
T Consensus       241 ~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~  281 (354)
T 2pbi_B          241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE  281 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence            9999999999976 899999999999999998877766543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=4.4e-24  Score=133.83  Aligned_cols=122  Identities=23%  Similarity=0.401  Sum_probs=103.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcc--eeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQ--CEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~--~~~~~   75 (131)
                      +|+|++++|++|+.|++|++|++.   .+.+..+.+|.++|.+++|+|  +++++++++.|+++++||+++++  .+..+
T Consensus        16 ~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~   95 (297)
T 2pm7_B           16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH   95 (297)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence            488999999999999999999986   356778899999999999986  48999999999999999998874  45667


Q ss_pred             ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCe--eeEEEecccceEE
Q psy3840          76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTRVYY  124 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~  124 (131)
                      ..|...|.+++|+|+  +. +++++.|+.|++||++++.  ....+.+|...+.
T Consensus        96 ~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~  149 (297)
T 2pm7_B           96 AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (297)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred             ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence            778889999999996  55 8999999999999998763  2345566765543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=5.2e-24  Score=135.77  Aligned_cols=105  Identities=20%  Similarity=0.358  Sum_probs=95.8

Q ss_pred             CCCCEEEEEeCCCeEEEEcCCC--------CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840           6 NNGSFLATGSYDGYARIWTSDG--------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      +++++|++|+.|++|++||+..        .+...+.+|...|.+++|+|++.++++++.|+++++||+++++.+..+.+
T Consensus        37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~  116 (343)
T 2xzm_R           37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG  116 (343)
T ss_dssp             CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC
T ss_pred             CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            3899999999999999999752        34566789999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      |...|.+++|+|++. +++++.|+.|++||++..
T Consensus       117 h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~  150 (343)
T 2xzm_R          117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE  150 (343)
T ss_dssp             CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence            999999999999987 899999999999999743

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=1.3e-23  Score=134.65  Aligned_cols=121  Identities=18%  Similarity=0.255  Sum_probs=106.8

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC--CCCe
Q psy3840           6 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPA   82 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~--~~~v   82 (131)
                      ++++.+++|+.|+.|++||+. ++.+..+.+|...|.+++|+|++..+++++.|+++++||++.++.+..+..+  ...+
T Consensus       208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~  287 (354)
T 2pbi_B          208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA  287 (354)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence            367899999999999999987 7778888999999999999999999999999999999999988776665533  3468


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .+++|+|++. +++++.|+.|++||+++++.+..+.+|...+..+
T Consensus       288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l  332 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL  332 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE
Confidence            8999999987 8899999999999999999999999998876543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=2.3e-24  Score=146.40  Aligned_cols=116  Identities=23%  Similarity=0.400  Sum_probs=104.8

Q ss_pred             cccCCCC-EEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee----
Q psy3840           3 SSRNNGS-FLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS----   76 (131)
Q Consensus         3 ~~~~~~~-~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~----   76 (131)
                      +|+|++. .|++|+.|++|++||.. ++....+.+|.+.|.+++|+|+++++++++.|+++++||+.+++.+..+.    
T Consensus       154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~  233 (611)
T 1nr0_A          154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL  233 (611)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence            4788876 69999999999999976 66677889999999999999999999999999999999999998877774    


Q ss_pred             ---cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          77 ---FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        77 ---~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                         .|...|.+++|+|+++ +++++.|+.|++||+++++++.++..
T Consensus       234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~  279 (611)
T 1nr0_A          234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV  279 (611)
T ss_dssp             SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence               6888999999999987 89999999999999999988887754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.93  E-value=1.2e-23  Score=136.38  Aligned_cols=113  Identities=27%  Similarity=0.448  Sum_probs=102.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|++++|++|+.|+.|++||+. ++.+..+.+|...|.+++|+|++..+++++.|+++++||+++++....+. +...
T Consensus       130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~  208 (393)
T 1erj_A          130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDG  208 (393)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence            478999999999999999999987 66777889999999999999999999999999999999999998877766 4568


Q ss_pred             eEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          82 ALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        82 v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      +.+++++| ++. +++++.|+.|++||+++++.+..+
T Consensus       209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL  245 (393)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence            99999999 666 899999999999999999877766

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=7.6e-24  Score=137.31  Aligned_cols=120  Identities=23%  Similarity=0.434  Sum_probs=108.3

Q ss_pred             cccC-CCCEEEEEeCCCeEEEEcCC-C-------CceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCccee
Q psy3840           3 SSRN-NGSFLATGSYDGYARIWTSD-G-------SLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~-~~~~l~~~~~d~~i~~~~~~-~-------~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~   72 (131)
                      +|+| ++++|++|+.|+.|++|++. +       +.+..+.+|...|.+++|+|++ ..+++++.|+.+++||+++++.+
T Consensus        88 ~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  167 (402)
T 2aq5_A           88 AWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV  167 (402)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc
Confidence            4788 89999999999999999987 3       5677888999999999999997 69999999999999999999998


Q ss_pred             eee--ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE-ecccce
Q psy3840          73 QQF--SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF-EGHTRV  122 (131)
Q Consensus        73 ~~~--~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~  122 (131)
                      ..+  ..|...+.+++|+|++. +++++.|+.|++||+++++.+..+ ..|...
T Consensus       168 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (402)
T 2aq5_A          168 LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT  221 (402)
T ss_dssp             EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS
T ss_pred             EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC
Confidence            888  77889999999999976 999999999999999999999888 667653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4e-24  Score=135.77  Aligned_cols=108  Identities=26%  Similarity=0.417  Sum_probs=96.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-C----CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--ceeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-G----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--QCEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~----~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~--~~~~~~   75 (131)
                      +|+|++++|++|+.|++|++||+. .    +.+..+.+|...|.+++|+|++.++++++.|+++++||..++  +++..+
T Consensus       114 ~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~  193 (330)
T 2hes_X          114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL  193 (330)
T ss_dssp             EECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc
Confidence            479999999999999999999984 2    345677889999999999999999999999999999998765  577888


Q ss_pred             ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCC
Q psy3840          76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      .+|...|.+++|+|+  +. +++++.|+.|++||++++
T Consensus       194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            899999999999998  54 899999999999998754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=1.1e-23  Score=141.38  Aligned_cols=119  Identities=25%  Similarity=0.459  Sum_probs=104.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      +|+|||++|++|+.|+.|++||..++.+.++.+|.+.|.+++|+|+++++++++.|++|++||. +++.+..+..|...|
T Consensus        23 a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v  101 (577)
T 2ymu_A           23 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  101 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCE
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCE
Confidence            5899999999999999999999889999999999999999999999999999999999999995 677888899999999


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      .+++|+|++. +++++.|+.+++|+.... .......+...+
T Consensus       102 ~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v  142 (577)
T 2ymu_A          102 RGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSV  142 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCC-EEEEECCCSSCE
T ss_pred             EEEEECCCCCEEEEEcCCCceeecccccc-eeeeccCCCCce
Confidence            9999999987 899999999999997644 334444444433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.92  E-value=4.1e-24  Score=137.98  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=103.7

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC---
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS---   79 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~---   79 (131)
                      +++++++++|+.|++|++||+.  +..+..+.+|.+.|.+++|+|+++++++++.|+++++||+++++.+..+..+.   
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            3478999999999999999986  56778889999999999999999999999999999999999998877765432   


Q ss_pred             ----CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE----ecccceEE
Q psy3840          80 ----APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF----EGHTRVYY  124 (131)
Q Consensus        80 ----~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~  124 (131)
                          ..+.+++|+|++. +++++.|+.|++||+.+++.+..+    .+|...+.
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~  348 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS  348 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceE
Confidence                2488999999987 889999999999999999888776    56766554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=1.9e-23  Score=135.37  Aligned_cols=123  Identities=24%  Similarity=0.486  Sum_probs=104.6

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCC-CCceeec-------ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-----
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSD-GSLKSTL-------GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-----   69 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~-~~~~~~~-------~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-----   69 (131)
                      ++| +++++++|+.|+.|++||+. +..+..+       .+|...|.+++|+|+++++++++.|+.+++||+++.     
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~  293 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  293 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence            566 89999999999999999987 4444444       578899999999999999999999999999999753     


Q ss_pred             -------ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          70 -------QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        70 -------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                             .+...+.+|...+.+++|+|++. +++++.|+.|++||+++++++..+.+|...+..+
T Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence                   33456677888999999999976 8999999999999999999999999998876544

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.92  E-value=1.5e-23  Score=142.42  Aligned_cols=122  Identities=23%  Similarity=0.395  Sum_probs=102.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecc-------cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLG-------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~-------~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~   74 (131)
                      +|+|++++|++|+.|++|++||.. ++....+.       +|.+.|.+++|+|+++++++++.|+++++||+++++.+..
T Consensus       197 ~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~  276 (611)
T 1nr0_A          197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT  276 (611)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeee
Confidence            489999999999999999999976 66666653       7999999999999999999999999999999987654432


Q ss_pred             -------------------------------------------eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          75 -------------------------------------------FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        75 -------------------------------------------~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                                                                 +.+|...|.+++|+|+++ +++++.|+.|++||++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence                                                       345778899999999987 899999999999999998


Q ss_pred             eeeEEE-ecccceEE
Q psy3840         111 KPVKSF-EGHTRVYY  124 (131)
Q Consensus       111 ~~~~~~-~~~~~~~~  124 (131)
                      +....+ .+|...+.
T Consensus       357 ~~~~~~~~~h~~~v~  371 (611)
T 1nr0_A          357 ISNRVFPDVHATMIT  371 (611)
T ss_dssp             CEEECSSCSCSSCEE
T ss_pred             ceeeecccCCcceEE
Confidence            776654 45555443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.92  E-value=3.4e-24  Score=137.90  Aligned_cols=107  Identities=16%  Similarity=0.159  Sum_probs=93.9

Q ss_pred             cccCCCCEEEEEeCCC----eEEEEcCCCC-----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840           3 SSRNNGSFLATGSYDG----YARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~----~i~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~   73 (131)
                      +|+|+++.+++++.|+    .++.|++...     ....+.+|...|.+++|+|+++++++|+.|++|++||+++++++.
T Consensus       226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~  305 (365)
T 4h5i_A          226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK  305 (365)
T ss_dssp             EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence            4789999999998877    5788887522     234567788999999999999999999999999999999999888


Q ss_pred             ee-ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC
Q psy3840          74 QF-SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        74 ~~-~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~  109 (131)
                      .+ .+|...|++++|+|+++ |++++.|++|+|||+..
T Consensus       306 ~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          306 IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            75 67999999999999987 89999999999999964

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.91  E-value=3.1e-23  Score=133.04  Aligned_cols=124  Identities=14%  Similarity=0.267  Sum_probs=108.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcceeeeee--cC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFS--FH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~~~~~--~~   78 (131)
                      +|+|++++|++|+.|+.|++||+. ++.+..+.+|...|.+++|+|++ ..+++++.|+.|++||+++++....+.  .+
T Consensus       146 ~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~  225 (357)
T 4g56_B          146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS  225 (357)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc
Confidence            478999999999999999999987 77788889999999999999976 478999999999999999988766554  35


Q ss_pred             CCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          79 SAPALDVDWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        79 ~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ...+.+++|+|++ . +++++.|+.|++||+++++++..+.+|...+..+
T Consensus       226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l  275 (357)
T 4g56_B          226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL  275 (357)
T ss_dssp             CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred             cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence            5679999999974 4 7889999999999999999999999888776543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.91  E-value=1.7e-22  Score=128.76  Aligned_cols=121  Identities=19%  Similarity=0.303  Sum_probs=102.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee---cC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---FH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---~~   78 (131)
                      +|+|++.++++|+.|++|++||+. ++.+..+.+|...|.+++|+|+++++++++.|+.+++||+.... .....   .|
T Consensus        83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~  161 (343)
T 2xzm_R           83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENH  161 (343)
T ss_dssp             EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSC
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCC
Confidence            478999999999999999999987 77788889999999999999999999999999999999997433 22222   56


Q ss_pred             CCCeEEEEEcCCC----------c-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          79 SAPALDVDWQSNT----------S-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        79 ~~~v~~~~~~~~~----------~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      ...+.+++|+|++          . +++++.|+.|++|| .+.+....+.+|...+..
T Consensus       162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNH  218 (343)
T ss_dssp             SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEE
T ss_pred             CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceE
Confidence            7789999999975          3 89999999999999 456777788888776644

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.91  E-value=3e-23  Score=133.09  Aligned_cols=123  Identities=18%  Similarity=0.231  Sum_probs=95.3

Q ss_pred             cccCCCCEEEEEeC------CCeEEEEcCC-CC----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce
Q psy3840           3 SSRNNGSFLATGSY------DGYARIWTSD-GS----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC   71 (131)
Q Consensus         3 ~~~~~~~~l~~~~~------d~~i~~~~~~-~~----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~   71 (131)
                      +|+|||++|++|+.      |+.|++|+.. +.    .......|...|.+++|+|++. +++++.|++|++||+.+++.
T Consensus        49 ~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~  127 (357)
T 4g56_B           49 RYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKES  127 (357)
T ss_dssp             EECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-------
T ss_pred             EECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccce
Confidence            58999999999997      6789999875 32    2233456888999999999875 55678899999999988765


Q ss_pred             ee----eeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          72 EQ----QFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        72 ~~----~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ..    ...+|...|.+++|+|+++ +++++.|+.|++||+++++++..+.+|...+..+
T Consensus       128 ~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v  187 (357)
T 4g56_B          128 LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV  187 (357)
T ss_dssp             -CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            43    2336788999999999987 8999999999999999999999999998877654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=5.7e-23  Score=142.54  Aligned_cols=123  Identities=18%  Similarity=0.279  Sum_probs=112.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|+++++++|+.||.|++||.. ++.+..+.+|.++|.+++|+|+++++++++.|+.+++||+.+++.+..+..|...
T Consensus        20 ~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~   99 (814)
T 3mkq_A           20 DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY   99 (814)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC
Confidence            589999999999999999999986 7778888899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~  125 (131)
                      +.+++|+|++. +++++.|+.|++||++++ .....+.+|...+..
T Consensus       100 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  145 (814)
T 3mkq_A          100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred             EEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence            99999999986 899999999999999987 677777878766544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=3.3e-24  Score=137.62  Aligned_cols=123  Identities=15%  Similarity=0.265  Sum_probs=99.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-C--CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc---eeeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-G--SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ---CEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~---~~~~~~   76 (131)
                      +|+|++++|++|+.|+.|++||+. +  +.+..+.+|.+.|.+++|+|+++++++++.|+.+++||+.+++   ....+.
T Consensus        18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~   97 (377)
T 3dwl_C           18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL   97 (377)
T ss_dssp             EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC
T ss_pred             EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec
Confidence            579999999999999999999987 4  5677888999999999999999999999999999999999876   566677


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe---eeEEEec-ccceEEE
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK---PVKSFEG-HTRVYYL  125 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~---~~~~~~~-~~~~~~~  125 (131)
                      .|...+.+++|+|++. +++++.|+.|++||+++++   .+..+.. |...+..
T Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~  151 (377)
T 3dwl_C           98 RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS  151 (377)
T ss_dssp             CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred             ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence            7889999999999976 8999999999999999886   3667766 7666544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.91  E-value=1.2e-22  Score=146.14  Aligned_cols=124  Identities=19%  Similarity=0.330  Sum_probs=114.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|+++++++|+.||+|++||.. ++.+..+.+|.+.|.+++|+|+++++++++.|+.+++||+.+++.+..+..|...
T Consensus       622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~  701 (1249)
T 3sfz_A          622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ  701 (1249)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence            589999999999999999999987 7788889999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSN--TS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      +.+++|+|+  +. +++++.|+.|++||+++++++..+.+|...+..+
T Consensus       702 v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~  749 (1249)
T 3sfz_A          702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC  749 (1249)
T ss_dssp             EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred             EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence            999999995  33 7899999999999999999999999888776543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.91  E-value=1e-23  Score=133.20  Aligned_cols=108  Identities=27%  Similarity=0.474  Sum_probs=94.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CC--ceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcc--eeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GS--LKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQ--CEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~--~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~--~~~~~   75 (131)
                      +|+|++++|++|+.|++|++||+. ++  .+..+.+|.++|.+++|+|  +++++++++.|+++++||+++++  ....+
T Consensus        20 ~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~   99 (316)
T 3bg1_A           20 QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH   99 (316)
T ss_dssp             EECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE
T ss_pred             eEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc
Confidence            478999999999999999999986 32  4567889999999999986  48999999999999999998873  55667


Q ss_pred             ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCC
Q psy3840          76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      ..|...|.+++|+|+  +. +++++.|+.|++||++.+
T Consensus       100 ~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A          100 AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            788899999999997  55 899999999999999876

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=1.7e-23  Score=137.13  Aligned_cols=118  Identities=18%  Similarity=0.211  Sum_probs=103.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeee---eecC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ---FSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~---~~~~   78 (131)
                      +|+|++++|++|+.||.|++||+.++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+++.+....   ...|
T Consensus       216 ~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h  295 (435)
T 4e54_B          216 DVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH  295 (435)
T ss_dssp             EEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC
T ss_pred             EECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec
Confidence            368899999999999999999999888889999999999999999765 788999999999999988664433   3467


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      ...|.+++|+|++. |++++.|+.|++||+++++....+..|.
T Consensus       296 ~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~  338 (435)
T 4e54_B          296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP  338 (435)
T ss_dssp             SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred             cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence            88999999999987 8999999999999999988777665543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=1.7e-22  Score=128.62  Aligned_cols=120  Identities=29%  Similarity=0.548  Sum_probs=104.7

Q ss_pred             cccCC---CCEEEEEeCCCeEEEEcCC--CCce-eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           3 SSRNN---GSFLATGSYDGYARIWTSD--GSLK-STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~---~~~l~~~~~d~~i~~~~~~--~~~~-~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      +|+|+   +++|++|+.||.|++||+.  +..+ ..+.+|.+.|.+++|+|+++++++++.|+.+++||+++++.+. +.
T Consensus        46 ~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~  124 (368)
T 3mmy_A           46 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IA  124 (368)
T ss_dssp             EECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EE
T ss_pred             EEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-ec
Confidence            47787   6999999999999999987  4444 6778899999999999999999999999999999999988765 45


Q ss_pred             cCCCCeEEEEE--cCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          77 FHSAPALDVDW--QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        77 ~~~~~v~~~~~--~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      .|...+.+++|  +|++. +++++.|+.|++||+++++++..+..+....
T Consensus       125 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  174 (368)
T 3mmy_A          125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY  174 (368)
T ss_dssp             ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE
T ss_pred             cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce
Confidence            58889999999  88877 8999999999999999999888888776433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.91  E-value=1.6e-22  Score=130.53  Aligned_cols=116  Identities=19%  Similarity=0.349  Sum_probs=100.6

Q ss_pred             ccCC-CCEEEEEeCCCeEEEEcCC-CCceeec-----ccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECC-Ccceeee
Q psy3840           4 SRNN-GSFLATGSYDGYARIWTSD-GSLKSTL-----GQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAA-SGQCEQQ   74 (131)
Q Consensus         4 ~~~~-~~~l~~~~~d~~i~~~~~~-~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~-~~~~~~~   74 (131)
                      |.|+ +..|++|+.|++|++||+. ++.+..+     .+|...+.++.++| ++.++++++.|+.+++||++ .++.+..
T Consensus       165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~  244 (380)
T 3iz6_a          165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT  244 (380)
T ss_dssp             CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred             EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            4454 5679999999999999987 5555544     57889999999987 88999999999999999998 4577788


Q ss_pred             eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          75 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      +.+|...|.+++|+|++. +++++.|+.|++||+++++++..+..+
T Consensus       245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~  290 (380)
T 3iz6_a          245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE  290 (380)
T ss_dssp             ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred             ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence            889999999999999987 899999999999999999988887654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=8.2e-23  Score=131.54  Aligned_cols=117  Identities=18%  Similarity=0.228  Sum_probs=104.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCC----cceeeeeec
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAAS----GQCEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~----~~~~~~~~~   77 (131)
                      +|+|+++++++|+.|+.|++||+.++.+..+..|...|.+++|+|+++ ++++++.|+.+++||+++    +..+..+ .
T Consensus       170 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~  248 (383)
T 3ei3_B          170 DVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P  248 (383)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E
T ss_pred             EECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c
Confidence            478999999999999999999999888899999999999999999998 999999999999999987    5555555 5


Q ss_pred             CCCCeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          78 HSAPALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        78 ~~~~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      +...+.+++|+| ++. +++++.|+.|++||+++++.+..+..|.
T Consensus       249 ~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          249 HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred             CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence            788999999999 876 8999999999999999988777776553

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.7e-23  Score=131.30  Aligned_cols=114  Identities=13%  Similarity=0.103  Sum_probs=95.6

Q ss_pred             cccC--CCCEEEEEeCCCeEEEEcCC-CCceeecc-cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee-eeeec
Q psy3840           3 SSRN--NGSFLATGSYDGYARIWTSD-GSLKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE-QQFSF   77 (131)
Q Consensus         3 ~~~~--~~~~l~~~~~d~~i~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~-~~~~~   77 (131)
                      +++|  +++++++++.|+.|++||+. ++...... .+...+.+++|+|++.++++|+.|+.|++||+++++.+ ..+..
T Consensus       132 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~  211 (343)
T 3lrv_A          132 YGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV  211 (343)
T ss_dssp             ECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC
T ss_pred             EcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec
Confidence            4678  99999999999999999987 45544443 45558999999999999999999999999999999877 77777


Q ss_pred             -CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          78 -HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        78 -~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                       |..+|.+++|+|++. +++++ ++.|++||+++++.+..+.
T Consensus       212 ~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          212 DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred             cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence             889999999999987 77777 5599999999887655443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.91  E-value=6.2e-22  Score=124.86  Aligned_cols=119  Identities=17%  Similarity=0.265  Sum_probs=105.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-C--ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-S--LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~--~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +|+|+++++++++.|+.|++||+.. +  ....+..|...+.+++|+|+++.+++++.|+.+++||+++++.+..+..|.
T Consensus       104 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~  183 (337)
T 1gxr_A          104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence            4789999999999999999999873 3  456677888999999999999999999999999999999999999998889


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      ..+.+++|+|++. +++++.|+.|++||+++++.+..+.....
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  226 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ  226 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCc
Confidence            9999999999976 89999999999999999988887764433

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=1.6e-22  Score=138.94  Aligned_cols=122  Identities=20%  Similarity=0.272  Sum_probs=106.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeec----ccccccEEEEEEcCCC--CEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTL----GQHKGPIFALKWNKRG--NYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~--~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      +|+|++++|++|+.|++|++||..+.....+    .+|...|.+++|+|++  ..+++++.|+.|++||+++++....+.
T Consensus       479 ~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~  558 (694)
T 3dm0_A          479 AFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA  558 (694)
T ss_dssp             EECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            4789999999999999999999875443332    4688899999999976  689999999999999999999999999


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      .|...|.+++|+|++. +++++.|+.|++||+++++++..+..+.....
T Consensus       559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~  607 (694)
T 3dm0_A          559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA  607 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEE
Confidence            9999999999999987 89999999999999999998887766554333

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.91  E-value=7.3e-23  Score=132.91  Aligned_cols=122  Identities=20%  Similarity=0.282  Sum_probs=102.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec---C
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---H   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~---~   78 (131)
                      +|+|++++|++|+.|+.|++||+. ++.+..+.+|.+.|.+++|+|+++.+++++.|+.+++||+++++.+..+..   +
T Consensus       146 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  225 (420)
T 3vl1_A          146 KFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP  225 (420)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT
T ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC
Confidence            478999999999999999999987 777888889999999999999999999999999999999999988877764   2


Q ss_pred             CCC---------------------eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe-cccceEE
Q psy3840          79 SAP---------------------ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE-GHTRVYY  124 (131)
Q Consensus        79 ~~~---------------------v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~  124 (131)
                      ...                     +.+++|+|++. +++++.|+.|++||+++++.+..+. .|...+.
T Consensus       226 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  294 (420)
T 3vl1_A          226 HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN  294 (420)
T ss_dssp             TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEE
T ss_pred             CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCce
Confidence            233                     44455578877 8999999999999999998777764 3555443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=2e-22  Score=129.91  Aligned_cols=114  Identities=14%  Similarity=0.244  Sum_probs=104.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc---c---cccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCccee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ---H---KGPIFALKWNKRGNYILSAGVD---KTTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~---~---~~~i~~~~~~~~~~~~~s~~~d---~~i~~~d~~~~~~~   72 (131)
                      +|+|++ .+++++.|+.|++||+. ++.+..+..   |   ...+.+++|+|+++++++++.|   +.+++||+++++.+
T Consensus       193 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~  271 (397)
T 1sq9_A          193 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI  271 (397)
T ss_dssp             EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence            478889 99999999999999987 677777777   8   9999999999999999999999   99999999999999


Q ss_pred             eeeec-------------CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          73 QQFSF-------------HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        73 ~~~~~-------------~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..+..             |...+.+++|+|++. +++++.|+.|++||+++++++..+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          272 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            88888             889999999999977 8999999999999999999999998

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=2.5e-23  Score=133.54  Aligned_cols=122  Identities=11%  Similarity=0.126  Sum_probs=102.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC----ceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECC----------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS----LKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAA----------   67 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~----~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~----------   67 (131)
                      +|+|++++|++++.|+.|++||+...    ....+.. |...|.+++|+|+++++++++.|+.+++||++          
T Consensus       107 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  186 (377)
T 3dwl_C          107 RWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA  186 (377)
T ss_dssp             ECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred             EECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc
Confidence            47899999999999999999998733    3566666 99999999999999999999999999999985          


Q ss_pred             --------CcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCee----eEEEecccceEEE
Q psy3840          68 --------SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKP----VKSFEGHTRVYYL  125 (131)
Q Consensus        68 --------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~  125 (131)
                              .++.+..+ .|...+.+++|+|++. +++++.|+.|++||+++++.    +..+..|...+..
T Consensus       187 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~  256 (377)
T 3dwl_C          187 SVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRS  256 (377)
T ss_dssp             CSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEE
T ss_pred             cccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEE
Confidence                    24455556 7888999999999987 99999999999999999877    7788888776543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=9.3e-23  Score=128.70  Aligned_cols=114  Identities=20%  Similarity=0.300  Sum_probs=99.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-----CceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCc------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASG------   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~------   69 (131)
                      +|+|++++|++|+.||.|++||+..     +....+.+|...|.+++|+|  ++.++++++.|+.+++||++++      
T Consensus        18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~   97 (351)
T 3f3f_A           18 VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG   97 (351)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS
T ss_pred             EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc
Confidence            4789999999999999999999872     35566778999999999999  5999999999999999999876      


Q ss_pred             ---ceeeeeecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          70 ---QCEQQFSFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        70 ---~~~~~~~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                         +.+..+..|...+.+++|+|+  +. +++++.|+.|++||+++++.+..+
T Consensus        98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  150 (351)
T 3f3f_A           98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW  150 (351)
T ss_dssp             CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred             cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence               456777788899999999998  76 899999999999999887655443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.4e-23  Score=137.42  Aligned_cols=117  Identities=11%  Similarity=0.233  Sum_probs=97.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccc-----cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKG-----PIFALKWNKRGNYILSAGVDKTTIIWDAASGQC------   71 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~------   71 (131)
                      +|+|+|.+||+++.||+|++|+..+ .+..+. |..     .+.+++|+|+|+++++|+.||+|++||+.+++.      
T Consensus        92 awSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i  169 (588)
T 2j04_A           92 KPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY  169 (588)
T ss_dssp             EECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence            5899999999999999999999655 555555 665     499999999999999999999999999998753      


Q ss_pred             -eeee----ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCee---eEEEe-cccce
Q psy3840          72 -EQQF----SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP---VKSFE-GHTRV  122 (131)
Q Consensus        72 -~~~~----~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~-~~~~~  122 (131)
                       +..+    .+|...|.+++|+|++ +++++.|+.+++||+.+++.   .+++. +|...
T Consensus       170 ~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~  228 (588)
T 2j04_A          170 FESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK  228 (588)
T ss_dssp             EEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred             eeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence             4555    4566799999999999 99999999999999987763   34553 56433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=2.3e-23  Score=132.70  Aligned_cols=112  Identities=20%  Similarity=0.292  Sum_probs=100.6

Q ss_pred             ccCC----CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeee--
Q psy3840           4 SRNN----GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQF--   75 (131)
Q Consensus         4 ~~~~----~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~--   75 (131)
                      |+|+    +++|++|+.|+.|++||+. ++.+..+.+|...|.+++|+| ++..+++++.|+.|++||+++++.+..+  
T Consensus        77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  156 (366)
T 3k26_A           77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG  156 (366)
T ss_dssp             EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred             eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence            5666    6799999999999999987 777888889999999999999 9999999999999999999999888887  


Q ss_pred             -ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEE
Q psy3840          76 -SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        76 -~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~  115 (131)
                       ..+...+.+++|+|++. +++++.|+.|++||+++++.+..
T Consensus       157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  198 (366)
T 3k26_A          157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA  198 (366)
T ss_dssp             TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHH
T ss_pred             cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccc
Confidence             57888999999999976 89999999999999998765443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.90  E-value=3.5e-22  Score=125.20  Aligned_cols=119  Identities=22%  Similarity=0.383  Sum_probs=99.8

Q ss_pred             CCCEEEEEeCCCeEEEEcCCC---CceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcce--eeeeecCC
Q psy3840           7 NGSFLATGSYDGYARIWTSDG---SLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQC--EQQFSFHS   79 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~~--~~~~~~~~   79 (131)
                      ++++|++|+.|++|++||+..   ..+..+..|...|.+++|+|+  +.++++++.|+.+++||++++..  ...+..|.
T Consensus        66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred             cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence            489999999999999999873   245567789999999999997  88999999999999999987632  35567788


Q ss_pred             CCeEEEEEcCC-------------C-cEEEEeCCCcEEEEeCCCCe----eeEEEecccceEEE
Q psy3840          80 APALDVDWQSN-------------T-SFASCSTDQHIHVCKLHSDK----PVKSFEGHTRVYYL  125 (131)
Q Consensus        80 ~~v~~~~~~~~-------------~-~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~  125 (131)
                      ..+.+++|+|+             + .+++++.|+.|++||+++++    .+..+.+|...+..
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence            89999999996             2 48999999999999998765    56677888876644

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7.8e-23  Score=144.00  Aligned_cols=112  Identities=7%  Similarity=0.041  Sum_probs=95.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceee-------c-----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKST-------L-----GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~-----~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      +|+|++++|++|+.|++|++||+.......       +     .+|...|.+++|+|+++++++|+.|++|++||+.+++
T Consensus       442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~  521 (902)
T 2oaj_A          442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ  521 (902)
T ss_dssp             CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred             cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence            468999999999999999999987332211       1     1788899999999999999999999999999987652


Q ss_pred             ---------------------------------------------eeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEE
Q psy3840          71 ---------------------------------------------CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC  105 (131)
Q Consensus        71 ---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~  105 (131)
                                                                   ++..+..|...|++++|+|+|.+++|+.|+.|++|
T Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lw  601 (902)
T 2oaj_A          522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLI  601 (902)
T ss_dssp             C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEE
T ss_pred             ccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEE
Confidence                                                         35567778999999999999988899999999999


Q ss_pred             eCCCCeeeE
Q psy3840         106 KLHSDKPVK  114 (131)
Q Consensus       106 d~~~~~~~~  114 (131)
                      |++++..+.
T Consensus       602 d~~~~~~~~  610 (902)
T 2oaj_A          602 DRRGPAIIY  610 (902)
T ss_dssp             ETTTTEEEE
T ss_pred             ECCCCeEEE
Confidence            998877654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.90  E-value=2.1e-22  Score=138.36  Aligned_cols=124  Identities=23%  Similarity=0.328  Sum_probs=107.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee---ecC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF---SFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~---~~~   78 (131)
                      +|+|++++|++|+.|++|++||+. +.....+.+|...|.+++|+|+++.+++++.|++|++||..........   ..|
T Consensus       437 ~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h  516 (694)
T 3dm0_A          437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH  516 (694)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence            478999999999999999999987 6777888999999999999999999999999999999998654332222   356


Q ss_pred             CCCeEEEEEcCCC---cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          79 SAPALDVDWQSNT---SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        79 ~~~v~~~~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ...+.+++|+|++   .+++++.|+.|++||+++++....+.+|...+..+
T Consensus       517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v  567 (694)
T 3dm0_A          517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV  567 (694)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            7789999999985   38999999999999999999999999998776543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.90  E-value=7.5e-24  Score=137.35  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=95.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC------ceeecccccccEEEEEEcC--------CCCEEEEEeCCCcEEEEECCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS------LKSTLGQHKGPIFALKWNK--------RGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~------~~~~~~~~~~~i~~~~~~~--------~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      ++++++.++++|+.|++|++||....      .+..+.+|.+.|.+++|+|        +++++++++.|+++++||+++
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            45667789999999999999998632      2345788999999999997        788999999999999999998


Q ss_pred             cceeeeeecCCCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          69 GQCEQQFSFHSAPALDVDWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        69 ~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      +..+..+..+..++.+++|+|++ . +++++.|+.|++||+++++.....
T Consensus       176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~  225 (393)
T 4gq1_A          176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN  225 (393)
T ss_dssp             TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred             CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence            88777777888999999999985 3 899999999999999988665443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.1e-22  Score=128.74  Aligned_cols=123  Identities=24%  Similarity=0.401  Sum_probs=104.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcc--eeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQ--CEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~--~~~~~   75 (131)
                      +|+|++++|++|+.|+.|++|++.   ++.+..+.+|.+.|.+++|+|+  +.++++++.|+.|++||+.+++  .+..+
T Consensus        18 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~   97 (379)
T 3jrp_A           18 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH   97 (379)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             EEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee
Confidence            478999999999999999999985   4556678889999999999986  9999999999999999999886  66777


Q ss_pred             ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCe--eeEEEecccceEEE
Q psy3840          76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTRVYYL  125 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~  125 (131)
                      ..+...+.+++|+|+  +. +++++.|+.|++||++++.  ....+..|...+..
T Consensus        98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~  152 (379)
T 3jrp_A           98 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  152 (379)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred             cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEE
Confidence            778899999999998  66 8999999999999998873  33445566655443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.90  E-value=1.1e-22  Score=133.28  Aligned_cols=123  Identities=15%  Similarity=0.099  Sum_probs=98.2

Q ss_pred             cccC-CCCEEEEEeCCCeEEEEcCC-C--CceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840           3 SSRN-NGSFLATGSYDGYARIWTSD-G--SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         3 ~~~~-~~~~l~~~~~d~~i~~~~~~-~--~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      +|+| ++++||+|+.||.|++||+. +  .....+.+|.+.|.+++|+| ++.++++++.|++|++||++.+........
T Consensus       126 ~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  205 (435)
T 4e54_B          126 AWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS  205 (435)
T ss_dssp             EECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred             EEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence            4777 56799999999999999986 2  33445678999999999998 789999999999999999987654333222


Q ss_pred             --CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          78 --HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        78 --~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                        ....+.+++|+|++. +++|+.|+.|++||++ ++++..+.+|...+..+
T Consensus       206 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v  256 (435)
T 4e54_B          206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV  256 (435)
T ss_dssp             SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred             CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence              234578899999987 8999999999999987 55667777787766543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-22  Score=132.94  Aligned_cols=118  Identities=12%  Similarity=0.108  Sum_probs=104.3

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc--ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-cCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHS   79 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~-~~~   79 (131)
                      ++++++++++|+.|+.|++||+. ++.+..+..  |.+.|.+++|+|++.++++++.|+.|++||+++++.+..+. .+.
T Consensus       178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  257 (437)
T 3gre_A          178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH  257 (437)
T ss_dssp             ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC
Confidence            45789999999999999999987 777777777  88999999999999999999999999999999999888775 566


Q ss_pred             CCeEEEEEcC----CCc-EEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          80 APALDVDWQS----NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        80 ~~v~~~~~~~----~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      .++.+++|+|    ++. +++++.|+.|++||+++++++..+.+|..
T Consensus       258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  304 (437)
T 3gre_A          258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE  304 (437)
T ss_dssp             EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred             CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence            7899997765    454 89999999999999999999999887753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.8e-22  Score=124.00  Aligned_cols=119  Identities=14%  Similarity=0.204  Sum_probs=106.4

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           5 RNNGSFLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      +++++.+++++.|+.|++||. ++....+.. |...+.+++|+|++. +++++.|+.+++||+++++.+..+..|...+.
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  229 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQN-DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY  229 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEET-TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cCCCCEEEEEECCCCEEEEec-CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence            448999999999999999994 445555555 889999999999988 89999999999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          84 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        84 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      +++|+|++.+++++.|+.|++||+++++++..+..|...+..
T Consensus       230 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~  271 (313)
T 3odt_A          230 CIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWS  271 (313)
T ss_dssp             EEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEE
T ss_pred             EEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEE
Confidence            999999999999999999999999999999999888766543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=1.3e-21  Score=123.46  Aligned_cols=122  Identities=23%  Similarity=0.362  Sum_probs=104.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CC---ceeecc--cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc--eeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GS---LKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ--CEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~---~~~~~~--~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~--~~~~   74 (131)
                      +|+|+++++++++ |+.|++|++. ++   ....+.  .|...+.+++|+|+++++++++.|+.+++||+.+++  ....
T Consensus        58 ~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  136 (337)
T 1gxr_A           58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE  136 (337)
T ss_dssp             EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred             EEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee
Confidence            4789999999998 9999999987 22   222222  688999999999999999999999999999999876  5566


Q ss_pred             eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          75 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      +..+...+.+++|+|++. +++++.|+.|++||+++++.+..+..|...+..
T Consensus       137 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~  188 (337)
T 1gxr_A          137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC  188 (337)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEE
Confidence            777888999999999976 899999999999999999999999888776544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=8.4e-23  Score=136.75  Aligned_cols=122  Identities=7%  Similarity=0.032  Sum_probs=102.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-C-CceeecccccccEEEE--EEcCCC-CEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-G-SLKSTLGQHKGPIFAL--KWNKRG-NYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~-~~~~~~~~~~~~i~~~--~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      |+++ ..|++|+.||+|++||+. + .+...+.+|.+.|.++  .|+|++ .++++++.|+++++||+++++.+..+..+
T Consensus       274 ~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~  352 (524)
T 2j04_B          274 FLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR  352 (524)
T ss_dssp             ESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred             ecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc
Confidence            4554 589999999999999997 4 3445678899999999  567887 89999999999999999998877776655


Q ss_pred             CC--CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          79 SA--PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        79 ~~--~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ..  .+.+++|+|++. +++++.|+.|++||++++.++.++.+|...+..+
T Consensus       353 ~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sv  403 (524)
T 2j04_B          353 FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAI  403 (524)
T ss_dssp             CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred             cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEE
Confidence            43  478999999876 8899999999999999999888888898776543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.90  E-value=1.1e-21  Score=127.35  Aligned_cols=120  Identities=19%  Similarity=0.289  Sum_probs=107.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC-CcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-SGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~-~~~~~~~~~~~~~   80 (131)
                      +|+|++++|++|+.||.|++||+. ++.+..+.+|...+.+++|  ++..+++++.|+.+++||++ ....+..+..|..
T Consensus       141 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  218 (401)
T 4aez_A          141 KWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS  218 (401)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             EECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence            478999999999999999999987 7778888899999999999  46799999999999999999 4666778888999


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      .+.+++|+|++. +++++.|+.|++||+++++++..+..|...+.
T Consensus       219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  263 (401)
T 4aez_A          219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK  263 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCC
T ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEE
Confidence            999999999976 89999999999999999999888887776543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.89  E-value=1.8e-21  Score=123.97  Aligned_cols=123  Identities=18%  Similarity=0.315  Sum_probs=103.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEE--cCCCCEEEEEeCCCcEEEEECCCcceeeee-----
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGNYILSAGVDKTTIIWDAASGQCEQQF-----   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~-----   75 (131)
                      +|+|++++|++++.|+.|++||+.......+..|...|.+++|  +|++.++++++.|+.+++||+++++.+..+     
T Consensus        93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  172 (368)
T 3mmy_A           93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER  172 (368)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC
T ss_pred             EECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC
Confidence            4789999999999999999999986666667789999999999  889999999999999999999765432111     


Q ss_pred             --------------------------------------------------------------------------------
Q psy3840          76 --------------------------------------------------------------------------------   75 (131)
Q Consensus        76 --------------------------------------------------------------------------------   75 (131)
                                                                                                      
T Consensus       173 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~  252 (368)
T 3mmy_A          173 CYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK  252 (368)
T ss_dssp             EEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred             ceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc
Confidence                                                                                            


Q ss_pred             -----ecCCC------------CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          76 -----SFHSA------------PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        76 -----~~~~~------------~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                           ..+..            .+.+++|+|++. +++++.|+.|++||+++++++..+..|...+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  320 (368)
T 3mmy_A          253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA  320 (368)
T ss_dssp             HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEE
T ss_pred             cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceE
Confidence                 11111            589999999976 999999999999999999999999988776644

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.6e-22  Score=125.58  Aligned_cols=113  Identities=22%  Similarity=0.349  Sum_probs=100.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|++. +++++.|+.|++||+. ++.+..+..|.+.+.+++|+|++ .+++++.|+.+++||+++++.+..+..+...
T Consensus       191 ~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  268 (313)
T 3odt_A          191 AVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAIS  268 (313)
T ss_dssp             EEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSC
T ss_pred             EEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCce
Confidence            3677777 8999999999999987 77888888999999999999998 5889999999999999999999999989889


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +.+++|+|++.+++++.|+.|++||+++++.+....
T Consensus       269 i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          269 IWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             EEEEEECTTSCEEEEETTSCEEEEESCGGGCCC---
T ss_pred             EEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehhh
Confidence            999999999998899999999999999887665544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.89  E-value=1.4e-21  Score=124.86  Aligned_cols=122  Identities=17%  Similarity=0.143  Sum_probs=105.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-C----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC----------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-S----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA----------   67 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~----------   67 (131)
                      .|+|+++++++++.|+.|++||+.. .    .......|...+.+++|+|+++++++++.|+.+++||++          
T Consensus       103 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  182 (372)
T 1k8k_C          103 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP  182 (372)
T ss_dssp             EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence            4789999999999999999999873 2    223336688999999999999999999999999999954          


Q ss_pred             --------CcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          68 --------SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        68 --------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                              .++.+..+..|...+.+++|+|++. +++++.|+.|++||+++++++..+..|...+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~  248 (372)
T 1k8k_C          183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL  248 (372)
T ss_dssp             BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred             cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeE
Confidence                    5677778888888999999999986 89999999999999999999999988876554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.89  E-value=7.9e-22  Score=126.41  Aligned_cols=102  Identities=21%  Similarity=0.328  Sum_probs=90.4

Q ss_pred             CEEEE--EeCCCeEEEEcCCCCc-----------------eeecccccccEEEEEEcCCCCEEEEEeCCCc-EEEEECCC
Q psy3840           9 SFLAT--GSYDGYARIWTSDGSL-----------------KSTLGQHKGPIFALKWNKRGNYILSAGVDKT-TIIWDAAS   68 (131)
Q Consensus         9 ~~l~~--~~~d~~i~~~~~~~~~-----------------~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~-i~~~d~~~   68 (131)
                      ..++.  |+.+|.|++||+....                 +..+.+|.+.|.+++|+|+++++++++.|++ +++||+++
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            45555  5789999999987322                 6778899999999999999999999999998 99999999


Q ss_pred             cceeeeee-c-CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          69 GQCEQQFS-F-HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        69 ~~~~~~~~-~-~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      ++.+..+. + |...|.+++|+|++. +++++.|+.|++||++.+
T Consensus       228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            99999988 4 888999999999987 899999999999999765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.89  E-value=5.8e-22  Score=128.26  Aligned_cols=123  Identities=29%  Similarity=0.603  Sum_probs=110.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-   81 (131)
                      +|+|++++|++|+.|+.|++|+..++.+..+..|...+.+++|+|+++++++++.|+.+++||+.+++.+..+..+... 
T Consensus       115 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (425)
T 1r5m_A          115 AWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG  194 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence            4789999999999999999999878888899999999999999999999999999999999999999888887766655 


Q ss_pred             --------------eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          82 --------------ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 --------------v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                                    +.++.|+|++.+++++.++.|++||+++++.+..+..|...+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~  252 (425)
T 1r5m_A          195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISV  252 (425)
T ss_dssp             -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEE
T ss_pred             cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEE
Confidence                          89999999988999999999999999999888888888776544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.6e-22  Score=132.83  Aligned_cols=115  Identities=10%  Similarity=0.100  Sum_probs=97.0

Q ss_pred             cccCCCCEEE----EEeCCCeEEEEcCC-C--------C---ceeecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q psy3840           3 SSRNNGSFLA----TGSYDGYARIWTSD-G--------S---LKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWD   65 (131)
Q Consensus         3 ~~~~~~~~l~----~~~~d~~i~~~~~~-~--------~---~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d   65 (131)
                      +|+|++++|+    +|+.|+.|++||+. +        +   ....+.+|...|.+++|+|+ +.++++++.|+++++||
T Consensus        99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD  178 (434)
T 2oit_A           99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ  178 (434)
T ss_dssp             EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence            5899999999    78889999999975 1        1   13556679999999999997 88999999999999999


Q ss_pred             CCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          66 AASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        66 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ++++..+.....|...+.+++|+|++. +++++.|+.|++||++ ++....+..
T Consensus       179 ~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~  231 (434)
T 2oit_A          179 VTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPC  231 (434)
T ss_dssp             ESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECC
T ss_pred             cCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccC
Confidence            999876666666778999999999987 9999999999999998 555555543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.89  E-value=2.1e-21  Score=122.47  Aligned_cols=108  Identities=21%  Similarity=0.403  Sum_probs=91.8

Q ss_pred             cccC--CCCEEEEEeCCCeEEEEcCCC----------CceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCC
Q psy3840           3 SSRN--NGSFLATGSYDGYARIWTSDG----------SLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         3 ~~~~--~~~~l~~~~~d~~i~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~   68 (131)
                      +|+|  ++++|++|+.|+.|++||+..          +.+..+..|.+.+.+++|+|+  +.++++++.|+.+++||+++
T Consensus        64 ~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           64 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             EECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred             EEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence            3566  699999999999999999873          446777889999999999998  99999999999999999876


Q ss_pred             cce------------------------------------------------------------eeeeecCCCCeEEEEEc
Q psy3840          69 GQC------------------------------------------------------------EQQFSFHSAPALDVDWQ   88 (131)
Q Consensus        69 ~~~------------------------------------------------------------~~~~~~~~~~v~~~~~~   88 (131)
                      ++.                                                            +..+..|...+.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~  223 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA  223 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC
T ss_pred             hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEEC
Confidence            432                                                            22344577889999999


Q ss_pred             CCC----c-EEEEeCCCcEEEEeCCCC
Q psy3840          89 SNT----S-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        89 ~~~----~-~~~~~~d~~i~i~d~~~~  110 (131)
                      |++    . +++++.|+.|++||++++
T Consensus       224 p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          224 PSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            996    5 899999999999999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.5e-21  Score=126.32  Aligned_cols=118  Identities=17%  Similarity=0.308  Sum_probs=107.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|+++++++++.|+.|++||+. ++.+..+..|...+.+++|+|++ .+++++.|+.+++||+++++.+..+..+...
T Consensus       254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  332 (425)
T 1r5m_A          254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP  332 (425)
T ss_dssp             EEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred             EECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence            478999999999999999999987 66777788899999999999999 9999999999999999999999999888899


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe--------------------eeEEEecccc
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDK--------------------PVKSFEGHTR  121 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~--------------------~~~~~~~~~~  121 (131)
                      +.+++|+|++. +++++.|+.|++||+++++                    .+..+..|..
T Consensus       333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (425)
T 1r5m_A          333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD  393 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTC
T ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc
Confidence            99999999977 8999999999999999887                    8888888844

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.89  E-value=2.5e-21  Score=124.64  Aligned_cols=120  Identities=12%  Similarity=0.154  Sum_probs=102.1

Q ss_pred             cccC-CCCEEEEEeCCCeEEEEcCCCCceeecccc---cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           3 SSRN-NGSFLATGSYDGYARIWTSDGSLKSTLGQH---KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      +|+| +++++++++.|+.|++||+.+..+..+..+   ...+.+++|+|+++.+++++.|+.+++||+ +++.+..+..|
T Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h  203 (383)
T 3ei3_B          125 KFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLH  203 (383)
T ss_dssp             EEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECS
T ss_pred             EeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccC
Confidence            3677 779999999999999999987766666544   478999999999999999999999999999 57778888889


Q ss_pred             CCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCC----CeeeEEEecccceEE
Q psy3840          79 SAPALDVDWQSNTS--FASCSTDQHIHVCKLHS----DKPVKSFEGHTRVYY  124 (131)
Q Consensus        79 ~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~  124 (131)
                      ...+.+++|+|++.  +++++.|+.|++||+++    +..+..+ .|...+.
T Consensus       204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~  254 (383)
T 3ei3_B          204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVN  254 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEE
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceE
Confidence            99999999999975  78999999999999997    5566665 4555543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.89  E-value=9.5e-22  Score=126.78  Aligned_cols=109  Identities=20%  Similarity=0.326  Sum_probs=98.9

Q ss_pred             cccCCCCEEEEEeCC---CeEEEEcCC-CCceeeccc-------------ccccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy3840           3 SSRNNGSFLATGSYD---GYARIWTSD-GSLKSTLGQ-------------HKGPIFALKWNKRGNYILSAGVDKTTIIWD   65 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---~~i~~~~~~-~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d   65 (131)
                      +|+|++++|++++.|   +.|++||+. ++.+..+..             |...+.+++|+|+++++++++.|+.+++||
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            478999999999999   999999987 777778887             999999999999999999999999999999


Q ss_pred             CCCcceeeeee------cC---------------CCCeEEEEEcCCC----------c-EEEEeCCCcEEEEeCCCCe
Q psy3840          66 AASGQCEQQFS------FH---------------SAPALDVDWQSNT----------S-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        66 ~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      +++++.+..+.      .+               ...+.+++|+|++          . +++++.|+.|++||+++++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            99999998888      77               8899999999996          4 8999999999999998763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.88  E-value=2e-21  Score=124.18  Aligned_cols=109  Identities=19%  Similarity=0.394  Sum_probs=96.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC---ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee--eec
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ--FSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~--~~~   77 (131)
                      +|+|+++++++++.|+.|++||+...   .+..+.+|...|.+++|+|+++++++++.|+.+++||+.+++....  +..
T Consensus        15 ~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~   94 (372)
T 1k8k_C           15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR   94 (372)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeec
Confidence            47899999999999999999998744   7788889999999999999999999999999999999988764433  355


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      +...+.+++|+|++. +++++.|+.|++||++.++
T Consensus        95 ~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence            778999999999976 8999999999999998775

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.88  E-value=1e-21  Score=132.46  Aligned_cols=107  Identities=14%  Similarity=0.292  Sum_probs=98.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc-ccccEEEEEEcC----------CCCEEEEEeCCCcEEEEECCCc-
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ-HKGPIFALKWNK----------RGNYILSAGVDKTTIIWDAASG-   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~-~~~~i~~~~~~~----------~~~~~~s~~~d~~i~~~d~~~~-   69 (131)
                      +|+|++++|++++.|+.|++||+. ++.+..+.+ |...|.+++|+|          +++++++++.|+.|++||+.++ 
T Consensus       495 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  574 (615)
T 1pgu_A          495 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  574 (615)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             EECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence            478999999999999999999996 777777777 999999999999          9999999999999999999987 


Q ss_pred             ceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCC
Q psy3840          70 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS  109 (131)
Q Consensus        70 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~  109 (131)
                      +.+..+..|...|.+++|+|++.+++++.|+.|++|++++
T Consensus       575 ~~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          575 KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL  614 (615)
T ss_dssp             CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred             eechhhhcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence            7788888899999999999997799999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.88  E-value=3.6e-21  Score=126.56  Aligned_cols=108  Identities=27%  Similarity=0.474  Sum_probs=97.7

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      +.++++++++|+.||.|++||+. ++.+..+.+|.+.|.+++|+|++ .+++++.|+++++||+++++.+..+..|...+
T Consensus       128 ~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v  206 (464)
T 3v7d_B          128 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV  206 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             EEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCcc
Confidence            45578899999999999999987 77888889999999999999987 99999999999999999999999999999999


Q ss_pred             EEEEEcC--CCc-EEEEeCCCcEEEEeCCCCee
Q psy3840          83 LDVDWQS--NTS-FASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        83 ~~~~~~~--~~~-~~~~~~d~~i~i~d~~~~~~  112 (131)
                      .+++|++  ++. +++++.|+.|++||++++..
T Consensus       207 ~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~  239 (464)
T 3v7d_B          207 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS  239 (464)
T ss_dssp             EEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred             EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence            9999984  555 89999999999999987653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.3e-21  Score=126.69  Aligned_cols=117  Identities=16%  Similarity=0.318  Sum_probs=102.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-----CceeecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCcc------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQ------   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~~~------   70 (131)
                      +|+|++++|++|+.|+.|++|++..     +.+..+.+|...|.+++|+|+ +.++++++.|+.|++||+++++      
T Consensus        74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred             EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence            4789999999999999999999874     477788899999999999997 8999999999999999999876      


Q ss_pred             eeee---eecCCCCeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          71 CEQQ---FSFHSAPALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        71 ~~~~---~~~~~~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ....   ...|...+.+++|+|+ +. +++++.|+.|++||+++++.+..+..+
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  207 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT  207 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC
T ss_pred             cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc
Confidence            3322   3567789999999998 55 899999999999999999998888765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.88  E-value=3e-21  Score=125.17  Aligned_cols=114  Identities=19%  Similarity=0.309  Sum_probs=99.2

Q ss_pred             EEEeCCCeEEEEcCCC-----CceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc-------ceeeeeecC
Q psy3840          12 ATGSYDGYARIWTSDG-----SLKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG-------QCEQQFSFH   78 (131)
Q Consensus        12 ~~~~~d~~i~~~~~~~-----~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~-------~~~~~~~~~   78 (131)
                      ++++.||.|++|++..     .....+.+|.+.|.+++|+| ++.++++++.|+.|++||+.++       +.+..+..|
T Consensus        51 ~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h  130 (402)
T 2aq5_A           51 CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH  130 (402)
T ss_dssp             BCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred             EEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence            3467899999999862     34556788999999999999 9999999999999999999987       567788889


Q ss_pred             CCCeEEEEEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEE--ecccceEEE
Q psy3840          79 SAPALDVDWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSF--EGHTRVYYL  125 (131)
Q Consensus        79 ~~~v~~~~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~  125 (131)
                      ...|.+++|+|++ . +++++.|+.|++||+++++.+..+  ..|...+..
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  181 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYS  181 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEE
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEE
Confidence            9999999999996 3 899999999999999999999998  677766544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.88  E-value=3e-21  Score=122.70  Aligned_cols=122  Identities=11%  Similarity=0.165  Sum_probs=103.6

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcC---CCCEEEEEeCCCcEEEEECCCcceeeeee----
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK---RGNYILSAGVDKTTIIWDAASGQCEQQFS----   76 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~s~~~d~~i~~~d~~~~~~~~~~~----   76 (131)
                      |+++++++++++.|+.|++||+..........|...+.+++|+|   ++..+++++.|+.+++||+++++....+.    
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  255 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSE  255 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeecc
Confidence            78999999999999999999998655556677889999999999   89999999999999999999877665554    


Q ss_pred             -cCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCC-------------------eeeEEEecccceEEE
Q psy3840          77 -FHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSD-------------------KPVKSFEGHTRVYYL  125 (131)
Q Consensus        77 -~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~-------------------~~~~~~~~~~~~~~~  125 (131)
                       .|...+.+++|+|++.  +++++.|+.|++||++++                   +.+..+..|...+..
T Consensus       256 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  326 (357)
T 3i2n_A          256 KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS  326 (357)
T ss_dssp             ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred             CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence             7889999999999865  789999999999999754                   356667777766543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=5.7e-21  Score=121.66  Aligned_cols=108  Identities=23%  Similarity=0.465  Sum_probs=98.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|++++|++|+.|+.|++||+. ++.+..+.+|.+.|.+++|+|+++++++++.|+.+++||+.+++.+..+. +...
T Consensus        39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~  117 (369)
T 3zwl_B           39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVP  117 (369)
T ss_dssp             EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSC
T ss_pred             EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCC
Confidence            478999999999999999999986 77888889999999999999999999999999999999999999888887 6789


Q ss_pred             eEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840          82 ALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK  111 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~  111 (131)
                      +.+++|+|++. +++++.+     +.|++||++...
T Consensus       118 v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B          118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            99999999987 7888888     999999987653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.88  E-value=1.4e-21  Score=127.60  Aligned_cols=117  Identities=14%  Similarity=0.195  Sum_probs=99.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CCcee-------ecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcce-
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GSLKS-------TLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQC-   71 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~-------~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~-   71 (131)
                      +|+|++++|++| .|+.|++||+.  +....       .+.+|...|.+++|+|++ ..+++++.|+.|++||+++++. 
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            478999999998 79999999997  33333       366899999999999998 9999999999999999999876 


Q ss_pred             ---eeeeecCCC------------CeEEEEEcCCCc-EEEEeCCCcEEEEeCCC-CeeeEEEecccc
Q psy3840          72 ---EQQFSFHSA------------PALDVDWQSNTS-FASCSTDQHIHVCKLHS-DKPVKSFEGHTR  121 (131)
Q Consensus        72 ---~~~~~~~~~------------~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~  121 (131)
                         +..+..+..            .+.+++|+|+++ +++++. +.|++||+++ ++++..+..|..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~  328 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY  328 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence               677777665            899999999987 777777 9999999997 888888887764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=5.7e-21  Score=123.94  Aligned_cols=118  Identities=25%  Similarity=0.356  Sum_probs=103.3

Q ss_pred             CCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD   84 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~   84 (131)
                      +++.+++|+.|+.|++||+.  +..+..+.+|.+.|.+++|+|+++++++++.|+.+++||+++++.+..+..+...+.+
T Consensus       185 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred             CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence            57899999999999999987  5667788899999999999999999999999999999999999998888889999999


Q ss_pred             EEEcCCCc--EEEEe--CCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          85 VDWQSNTS--FASCS--TDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        85 ~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      ++|+|++.  +++++  .|+.|++||+++++++..+..+.....
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~  308 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTS  308 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEE
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            99999754  55554  699999999999999888875544333

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.88  E-value=4.9e-21  Score=125.94  Aligned_cols=114  Identities=20%  Similarity=0.297  Sum_probs=103.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +++++++++++|+.|+.|++||+. ++.+..+.+|...+.+++|+|+++.+++++.|+.+++||+++++.+..+..|...
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  354 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  354 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc
Confidence            346778999999999999999987 7778888899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +.++++++ ..+++++.|+.|++||+++++......
T Consensus       355 v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~  389 (464)
T 3v7d_B          355 VGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSYH  389 (464)
T ss_dssp             EEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeeec
Confidence            99999974 459999999999999999887666554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.8e-21  Score=137.14  Aligned_cols=109  Identities=12%  Similarity=0.128  Sum_probs=96.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      +|+|++++||+|+.||+|++|+..+........|..+|.+++|+| ++++++++.|++|++||+++++.+..+. +...|
T Consensus        24 afspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V  101 (902)
T 2oaj_A           24 AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKI  101 (902)
T ss_dssp             EEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCE
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCE
Confidence            589999999999999999999987544444445788999999999 8899999999999999999999888886 56789


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      ++++|+|++. +++|+.|+.|++||+++++..
T Consensus       102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A          102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS  133 (902)
T ss_dssp             EEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            9999999987 899999999999999988753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=7.7e-21  Score=124.44  Aligned_cols=123  Identities=20%  Similarity=0.337  Sum_probs=104.4

Q ss_pred             cccCCCC-EEEEEeCCCeEEEEcCCC-Cc-------eeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc---
Q psy3840           3 SSRNNGS-FLATGSYDGYARIWTSDG-SL-------KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG---   69 (131)
Q Consensus         3 ~~~~~~~-~l~~~~~d~~i~~~~~~~-~~-------~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~---   69 (131)
                      +|+|++. +|++|+.||.|++|++.. ..       ...+.+|...|.+++|+| ++..+++++.|+.|++||++++   
T Consensus       188 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~  267 (430)
T 2xyi_A          188 SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS  267 (430)
T ss_dssp             EECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred             EeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence            4788887 999999999999999873 11       345668999999999999 7889999999999999999987   


Q ss_pred             ceeeeeecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCC-CeeeEEEecccceEEE
Q psy3840          70 QCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHS-DKPVKSFEGHTRVYYL  125 (131)
Q Consensus        70 ~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~  125 (131)
                      +.+..+..|...+.+++|+|++.  +++++.|+.|++||+++ .+++..+..|...+..
T Consensus       268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~  326 (430)
T 2xyi_A          268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ  326 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEE
T ss_pred             cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEE
Confidence            56677778889999999999864  78999999999999998 5678888888776544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.7e-21  Score=134.13  Aligned_cols=123  Identities=24%  Similarity=0.401  Sum_probs=105.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcc--eeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQ--CEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~--~~~~~   75 (131)
                      +|+|+++++++|+.||.|++||+.   +.....+.+|.++|.+++|+|+  ++.+++++.||.|++||+.+++  .+..+
T Consensus        16 ~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~   95 (753)
T 3jro_A           16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH   95 (753)
T ss_dssp             CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             EECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc
Confidence            588999999999999999999985   4556778899999999999987  9999999999999999999886  66777


Q ss_pred             ecCCCCeEEEEEcCC--Cc-EEEEeCCCcEEEEeCCCCe--eeEEEecccceEEE
Q psy3840          76 SFHSAPALDVDWQSN--TS-FASCSTDQHIHVCKLHSDK--PVKSFEGHTRVYYL  125 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~--~~-~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~  125 (131)
                      ..|...+.+++|+|+  +. +++++.|+.|++||++++.  ....+.+|...+..
T Consensus        96 ~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           96 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            788899999999998  66 8999999999999998873  34445566655443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.7e-21  Score=125.25  Aligned_cols=121  Identities=17%  Similarity=0.319  Sum_probs=104.8

Q ss_pred             cccCC-CCEEEEEeCCCeEEEEcCC-CCceeecccc------cccEEEEEEcCCC-CEEEEEeCCC---cEEEEECCCc-
Q psy3840           3 SSRNN-GSFLATGSYDGYARIWTSD-GSLKSTLGQH------KGPIFALKWNKRG-NYILSAGVDK---TTIIWDAASG-   69 (131)
Q Consensus         3 ~~~~~-~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~------~~~i~~~~~~~~~-~~~~s~~~d~---~i~~~d~~~~-   69 (131)
                      +|+|+ +.++++++.|+.|++||+. ++.+..+..+      ...+.+++|+|++ .++++++.|+   .+++||++++ 
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            46787 7899999999999999987 5566666655      7899999999986 6899999998   9999999986 


Q ss_pred             ceeeeee-cCCCCeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          70 QCEQQFS-FHSAPALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        70 ~~~~~~~-~~~~~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      +.+..+. .|...+.+++|+| ++. +++++.|+.|++||+++++++..+..|...+
T Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v  308 (416)
T 2pm9_A          252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC  308 (416)
T ss_dssp             SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred             CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCce
Confidence            5667777 7889999999999 666 8999999999999999999999998887654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3e-21  Score=126.90  Aligned_cols=123  Identities=15%  Similarity=0.069  Sum_probs=104.9

Q ss_pred             cccCCCCEE-EEEeCCCeEEEEcCC---CCceeecc--cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee---
Q psy3840           3 SSRNNGSFL-ATGSYDGYARIWTSD---GSLKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ---   73 (131)
Q Consensus         3 ~~~~~~~~l-~~~~~d~~i~~~~~~---~~~~~~~~--~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~---   73 (131)
                      +|+|++++| ++|+.|+.|++|++.   ++.+..+.  .|...+.+++|+|+++++++++.++.+++|++.+++...   
T Consensus       109 ~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~  188 (450)
T 2vdu_B          109 RLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQ  188 (450)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCC
T ss_pred             EEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccc
Confidence            479999996 889899999999976   45556555  566889999999999999999999999999998876544   


Q ss_pred             -eeecCCCCeEEEEEcCC---Cc-EEEEeCCCcEEEEeCCCCeeeEE-EecccceEEE
Q psy3840          74 -QFSFHSAPALDVDWQSN---TS-FASCSTDQHIHVCKLHSDKPVKS-FEGHTRVYYL  125 (131)
Q Consensus        74 -~~~~~~~~v~~~~~~~~---~~-~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~  125 (131)
                       .+..|...+.+++|+|+   +. +++++.|+.|++||+++++.+.. +.+|...+..
T Consensus       189 ~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~  246 (450)
T 2vdu_B          189 EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS  246 (450)
T ss_dssp             CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred             eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE
Confidence             67778899999999999   86 89999999999999999988877 4577766544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.3e-21  Score=121.50  Aligned_cols=116  Identities=10%  Similarity=-0.018  Sum_probs=91.9

Q ss_pred             EEEEeCCCeEEEEcCCCC----------ceeec-ccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840          11 LATGSYDGYARIWTSDGS----------LKSTL-GQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus        11 l~~~~~d~~i~~~~~~~~----------~~~~~-~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      +++++.|++|++|+..+.          .+... .+|.++|.+++|+|  +++++++++.|+.+++||+++++.......
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence            777788888888865421          12222 24668899999999  999999999999999999999988665533


Q ss_pred             -CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee-EEEec-ccceEEEE
Q psy3840          78 -HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV-KSFEG-HTRVYYLA  126 (131)
Q Consensus        78 -~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~~~~~  126 (131)
                       +...+.+++|+|++. +++|+.|+.|++||+++++.+ ..+.. |...+..+
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l  220 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV  220 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE
Confidence             445799999999987 788999999999999999887 77877 87766543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.4e-21  Score=126.63  Aligned_cols=116  Identities=11%  Similarity=0.061  Sum_probs=102.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CC----ceeecccccccEEEEEEcCC---CCEEEEEeCCCcEEEEECCCcceeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GS----LKSTLGQHKGPIFALKWNKR---GNYILSAGVDKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~----~~~~~~~~~~~i~~~~~~~~---~~~~~s~~~d~~i~~~d~~~~~~~~~   74 (131)
                      +|+|++++|++|+.++.|++|++. +.    ....+.+|.+.|.+++|+|+   ++++++++.|+.|++||+++++.+..
T Consensus       156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  235 (450)
T 2vdu_B          156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK  235 (450)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence            478999999999999999999986 33    23367789999999999999   99999999999999999999888777


Q ss_pred             -eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          75 -FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        75 -~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                       +.+|...+.+++|+ ++. +++++.|+.|++||+++++++..+..+
T Consensus       236 ~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  281 (450)
T 2vdu_B          236 WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYN  281 (450)
T ss_dssp             ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred             eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecch
Confidence             55788899999999 876 899999999999999999988887643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.88  E-value=4.4e-21  Score=129.37  Aligned_cols=119  Identities=13%  Similarity=0.176  Sum_probs=106.5

Q ss_pred             CCEEEEEeC-CCeEEEEcCCCCce--eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec-CCCCeE
Q psy3840           8 GSFLATGSY-DGYARIWTSDGSLK--STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF-HSAPAL   83 (131)
Q Consensus         8 ~~~l~~~~~-d~~i~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~   83 (131)
                      ++++++++. |+.|++||+.....  ..+..|...+.+++|+|+++++++++.|+.+++||+.+++.+..+.. |...+.
T Consensus       456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~  535 (615)
T 1pgu_A          456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN  535 (615)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred             CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCcee
Confidence            788999999 99999999984444  66788999999999999999999999999999999999999888887 889999


Q ss_pred             EEEEcC----------CCc-EEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840          84 DVDWQS----------NTS-FASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        84 ~~~~~~----------~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~  126 (131)
                      +++|+|          ++. +++++.|+.|++||++++ +++..+.+|...+..+
T Consensus       536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l  590 (615)
T 1pgu_A          536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL  590 (615)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred             EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEE
Confidence            999999          877 899999999999999998 7888888888766543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.88  E-value=2.3e-20  Score=118.02  Aligned_cols=110  Identities=16%  Similarity=0.302  Sum_probs=98.1

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      ....+++++.|+.|++||+. ++.+..+.+|.+.|.+++|+|+++++++++.|+.+++||+++.+.+..+.. ...+.++
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~  262 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINAL  262 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEee
Confidence            34678899999999999987 677788889999999999999999999999999999999999998888775 4689999


Q ss_pred             EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .|+|++.+++++.|+.|++||++++..+..+.
T Consensus       263 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  294 (340)
T 4aow_A          263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELK  294 (340)
T ss_dssp             EECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCCceeeccCCCEEEEEECCCCeEEEecc
Confidence            99999888889999999999999887776654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.1e-20  Score=123.47  Aligned_cols=123  Identities=13%  Similarity=0.080  Sum_probs=101.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC----CCceeeccc------------ccccEEEEE--EcCCCCEEEEEeCCCcEEEE
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD----GSLKSTLGQ------------HKGPIFALK--WNKRGNYILSAGVDKTTIIW   64 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~----~~~~~~~~~------------~~~~i~~~~--~~~~~~~~~s~~~d~~i~~~   64 (131)
                      +|+|++++|++|+.|+.|++||+.    ++.......            +...+.++.  +++++..+++++.|+.|++|
T Consensus       118 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  197 (437)
T 3gre_A          118 TMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF  197 (437)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             EEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            478899999999999999999983    433332222            344566666  55789999999999999999


Q ss_pred             ECCCcceeeeeec--CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe-cccceEEE
Q psy3840          65 DAASGQCEQQFSF--HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE-GHTRVYYL  125 (131)
Q Consensus        65 d~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~  125 (131)
                      |+++++.+..+..  |...+.+++|+|++. +++++.|+.|++||+++++++..+. .|...+..
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  262 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITH  262 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEE
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEE
Confidence            9999999998887  788999999999977 8999999999999999999999886 56555544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.88  E-value=7e-21  Score=122.47  Aligned_cols=124  Identities=17%  Similarity=0.113  Sum_probs=100.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCcee--ecccccccEEEEEEcCCCCEEEEEeCCC----cEEEEECCCcce----e
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKS--TLGQHKGPIFALKWNKRGNYILSAGVDK----TTIIWDAASGQC----E   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~s~~~d~----~i~~~d~~~~~~----~   72 (131)
                      +|+|+++++++++.++.+.+|...++.+.  ....|...+.+++|+|+++.+++++.++    .++.|++.....    .
T Consensus       183 ~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~  262 (365)
T 4h5i_A          183 HFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS  262 (365)
T ss_dssp             EECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE
T ss_pred             EEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee
Confidence            48999999999987765555555555543  4456888999999999999999998876    578888876543    3


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE-ecccceEEEE
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF-EGHTRVYYLA  126 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~  126 (131)
                      ..+..+...|++++|+|+++ |++|+.|+.|+|||+++++++.++ .+|...+..+
T Consensus       263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v  318 (365)
T 4h5i_A          263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEV  318 (365)
T ss_dssp             EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred             eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence            45667888999999999988 899999999999999999999886 6898876543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.87  E-value=1e-20  Score=124.07  Aligned_cols=121  Identities=21%  Similarity=0.390  Sum_probs=107.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +++++++++++|+.||.|++||+. ++.+..+.+|.+.|.+++|+  +..+++++.|+.+++||+.+++.+..+..|...
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~  201 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTST  201 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCc
Confidence            456779999999999999999987 78888899999999999997  679999999999999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      +.++.+++ ..+++++.|+.|++||+++++.+..+.+|...+..+
T Consensus       202 v~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  245 (445)
T 2ovr_B          202 VRCMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  245 (445)
T ss_dssp             EEEEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             EEEEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence            99999964 348999999999999999999999998888776543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.4e-20  Score=118.79  Aligned_cols=122  Identities=11%  Similarity=0.188  Sum_probs=109.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      +|+|+++.+++++.|+.|++||+.  +..+..+..|...+.+++|+|++.++++++.|+.+++||+++++.+..+. +..
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~  260 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC  260 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence            378899999999999999999987  46677788899999999999999999999999999999999999888877 567


Q ss_pred             CeEEEEEcCCCc-EEEEeCCC--------------cEEEEeCCCCeeeEEEecccceEEE
Q psy3840          81 PALDVDWQSNTS-FASCSTDQ--------------HIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      .+..++|+|++. +++++.++              .+++||+++++++..+.+|...+..
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~  320 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT  320 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEE
Confidence            899999999987 78887777              8999999999999999988877654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.87  E-value=2.7e-20  Score=117.67  Aligned_cols=122  Identities=18%  Similarity=0.265  Sum_probs=105.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC--ceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS--LKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      .++++++.+++|+.|+.+++||....  ......+|...+..++|+++  ...+++++.|+.+++||+++++.+..+..|
T Consensus       135 ~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h  214 (340)
T 4aow_A          135 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH  214 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC
Confidence            36788999999999999999998733  34455678999999999885  457889999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      ..+|.+++|+|++. +++++.|+.|++||+++.+++..+..+.....
T Consensus       215 ~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~  261 (340)
T 4aow_A          215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA  261 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEe
Confidence            99999999999987 89999999999999999999988887655433

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-21  Score=130.82  Aligned_cols=112  Identities=11%  Similarity=0.025  Sum_probs=92.9

Q ss_pred             CCEEEEEeCCCeEEEEcCCCC------------ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-eeee
Q psy3840           8 GSFLATGSYDGYARIWTSDGS------------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-CEQQ   74 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-~~~~   74 (131)
                      +.+|++++.|++|++||+...            +...+.+|...|.+++|+|+ ..+++|+.||+|++||++++. ....
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~  303 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFY  303 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEE
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEE
Confidence            689999999999999998622            12356789999999999985 489999999999999999764 4456


Q ss_pred             eecCCCCeEEE--EEcCCC-c-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          75 FSFHSAPALDV--DWQSNT-S-FASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        75 ~~~~~~~v~~~--~~~~~~-~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      +..|...|.++  .|+|++ . +++++.|++|++||+++++++..+.+|.
T Consensus       304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~  353 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF  353 (524)
T ss_dssp             EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred             eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence            78899999999  567776 5 8999999999999999887766665554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.87  E-value=1.2e-20  Score=120.06  Aligned_cols=119  Identities=15%  Similarity=0.257  Sum_probs=99.9

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeeccc-----ccccEEEEEEcCC----CCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQ-----HKGPIFALKWNKR----GNYILSAGVDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~-----~~~~i~~~~~~~~----~~~~~s~~~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      ...+++++.++.|++|++. ++.+..+..     |...+.+++|+|+    +.++++++.|+.|++||+.+++.+..+..
T Consensus        34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  113 (366)
T 3k26_A           34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG  113 (366)
T ss_dssp             SCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES
T ss_pred             CceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC
Confidence            4556666667799999987 555555544     4577999999998    67999999999999999999999999999


Q ss_pred             CCCCeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEE---ecccceEEEE
Q psy3840          78 HSAPALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSF---EGHTRVYYLA  126 (131)
Q Consensus        78 ~~~~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~  126 (131)
                      |...+.+++|+| ++. +++++.|+.|++||+++++.+..+   ..|...+..+
T Consensus       114 ~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A          114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence            999999999999 666 899999999999999999998888   5676665443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.87  E-value=1.3e-20  Score=123.30  Aligned_cols=122  Identities=22%  Similarity=0.363  Sum_probs=102.7

Q ss_pred             cccC-CCCEEEEEeCCCeEEEEcCC-C---CceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-cceeeee
Q psy3840           3 SSRN-NGSFLATGSYDGYARIWTSD-G---SLKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAAS-GQCEQQF   75 (131)
Q Consensus         3 ~~~~-~~~~l~~~~~d~~i~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~-~~~~~~~   75 (131)
                      +|+| ++.++++++.|+.|++||+. +   +.+..+..|...+.+++|+|++. .+++++.|+.|++||+++ ...+..+
T Consensus       238 ~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~  317 (430)
T 2xyi_A          238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF  317 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence            3677 77899999999999999987 3   46667778999999999999876 788999999999999998 5667888


Q ss_pred             ecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCC--------------CeeeEEEecccceEE
Q psy3840          76 SFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHS--------------DKPVKSFEGHTRVYY  124 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~--------------~~~~~~~~~~~~~~~  124 (131)
                      ..|...+.+++|+|++.  +++++.|+.|++||++.              .+.+..+.+|...+.
T Consensus       318 ~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  382 (430)
T 2xyi_A          318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS  382 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE
T ss_pred             ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce
Confidence            88999999999999874  88999999999999986              255666666766443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=1.1e-20  Score=123.72  Aligned_cols=120  Identities=21%  Similarity=0.445  Sum_probs=105.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +++++++++++|+.||.|++||.. ++....+.+|.+.|.+++|  +++.+++++.||.|++||+.+++.+..+..|...
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  215 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA  215 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc
Confidence            456689999999999999999987 7778888999999999998  7889999999999999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeee---EEEecccceEEE
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV---KSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~  125 (131)
                      +.+++|++ +.+++++.|+.|++||+++++.+   ..+.+|...+..
T Consensus       216 v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  261 (435)
T 1p22_A          216 VLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  261 (435)
T ss_dssp             EEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred             EEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEE
Confidence            99999974 46999999999999999987655   556677766544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.87  E-value=2.3e-21  Score=126.64  Aligned_cols=122  Identities=22%  Similarity=0.328  Sum_probs=96.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-C-----------ceeeccccc------------ccEEEEEEcCCC--CEEEEEe
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-S-----------LKSTLGQHK------------GPIFALKWNKRG--NYILSAG   56 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~-----------~~~~~~~~~------------~~i~~~~~~~~~--~~~~s~~   56 (131)
                      +|+|++++|++|+.||.|++|++.. +           ....+.+|.            +.|.+++|+|++  ..+++++
T Consensus        35 ~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s  114 (447)
T 3dw8_B           35 EFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST  114 (447)
T ss_dssp             EECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeC
Confidence            4899999999999999999999873 2           366778898            889999999988  7999999


Q ss_pred             CCCcEEEEECCCccee---------------------------------------ee-eecCCCCeEEEEEcCCCc-EEE
Q psy3840          57 VDKTTIIWDAASGQCE---------------------------------------QQ-FSFHSAPALDVDWQSNTS-FAS   95 (131)
Q Consensus        57 ~d~~i~~~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~~~~~-~~~   95 (131)
                      .|+.|++||+.+++..                                       .. ...|...|.+++|+|++. +++
T Consensus       115 ~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  194 (447)
T 3dw8_B          115 NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS  194 (447)
T ss_dssp             CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred             CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence            9999999998764431                                       12 246888999999999987 677


Q ss_pred             EeCCCcEEEEeCCC-CeeeEE-------EecccceEEE
Q psy3840          96 CSTDQHIHVCKLHS-DKPVKS-------FEGHTRVYYL  125 (131)
Q Consensus        96 ~~~d~~i~i~d~~~-~~~~~~-------~~~~~~~~~~  125 (131)
                      + .|+.|++||+++ ++.+..       +..|...+..
T Consensus       195 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  231 (447)
T 3dw8_B          195 A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA  231 (447)
T ss_dssp             E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred             e-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence            6 899999999994 444442       3456555443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=6.2e-21  Score=127.62  Aligned_cols=118  Identities=10%  Similarity=0.101  Sum_probs=94.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCc--------eeec----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSL--------KSTL----GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~--------~~~~----~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      +|||+|++|++|+.||+|++||+.++.        +.++    .+|.+.|.+++|+|++  +++++.|+++++||+.++.
T Consensus       136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence            589999999999999999999998442        3554    6678899999999999  8888999999999998877


Q ss_pred             e---eeeee-cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          71 C---EQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        71 ~---~~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      .   ...+. .|...|.+++|+ +..+++++ ++.|++||+.+++......+|...+.
T Consensus       214 ~~~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~  269 (588)
T 2j04_A          214 HQPVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH  269 (588)
T ss_dssp             SCCCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred             cccceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE
Confidence            3   24553 677899999999 54577776 69999999998777444436766543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.1e-20  Score=119.47  Aligned_cols=122  Identities=20%  Similarity=0.369  Sum_probs=101.5

Q ss_pred             ccCC--CCEEEEEeCCCeEEEEcCCC-C--ceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcc--eeee
Q psy3840           4 SRNN--GSFLATGSYDGYARIWTSDG-S--LKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQ--CEQQ   74 (131)
Q Consensus         4 ~~~~--~~~l~~~~~d~~i~~~~~~~-~--~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~--~~~~   74 (131)
                      |+++  +++|++|+.|+.|++||+.. +  .+..+..|...+.+++|+|+  +.++++++.|+.+++||++++.  ....
T Consensus        63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  142 (379)
T 3jrp_A           63 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII  142 (379)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred             eCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence            5555  89999999999999999873 3  66777789999999999998  9999999999999999998873  3345


Q ss_pred             eecCCCCeEEEEEcC-------------CCc-EEEEeCCCcEEEEeCCCCe----eeEEEecccceEEE
Q psy3840          75 FSFHSAPALDVDWQS-------------NTS-FASCSTDQHIHVCKLHSDK----PVKSFEGHTRVYYL  125 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~-------------~~~-~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~  125 (131)
                      +..+...+.+++|+|             ++. +++++.|+.|++||++++.    .+..+.+|...+..
T Consensus       143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~  211 (379)
T 3jrp_A          143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  211 (379)
T ss_dssp             EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence            667888999999999             455 8999999999999998764    44566677766543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.87  E-value=5.5e-21  Score=132.67  Aligned_cols=117  Identities=22%  Similarity=0.295  Sum_probs=104.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc-ceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~-~~~~~~~~~~~   80 (131)
                      .|+|++++|++|+.||.|++||+. ++.+..+.+|.+.|.+++|+|+++.+++++.|+.+++||+.++ .....+..|..
T Consensus        62 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  141 (814)
T 3mkq_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (814)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence            478999999999999999999987 7778888899999999999999999999999999999999886 66677788889


Q ss_pred             CeEEEEEcC-CCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          81 PALDVDWQS-NTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        81 ~v~~~~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      .+.+++|+| ++. +++++.|+.|++||+++++....+..+
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  182 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG  182 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC
Confidence            999999999 665 899999999999999888777666544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.87  E-value=8.8e-21  Score=119.80  Aligned_cols=111  Identities=15%  Similarity=0.291  Sum_probs=90.7

Q ss_pred             CCEEEEEeCCCeEEEEcCCC----CceeecccccccEEEEEEcCCC----CEEEEEeCCCcEEEEECCCc---c-eeeee
Q psy3840           8 GSFLATGSYDGYARIWTSDG----SLKSTLGQHKGPIFALKWNKRG----NYILSAGVDKTTIIWDAASG---Q-CEQQF   75 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~----~~~~s~~~d~~i~~~d~~~~---~-~~~~~   75 (131)
                      +++|++|+.|+.|++||+..    +.+..+.+|.+.|.+++|+|++    ..+++++.|+++++|++++.   + ....+
T Consensus       179 ~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~  258 (316)
T 3bg1_A          179 IKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL  258 (316)
T ss_dssp             CCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE
T ss_pred             cceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh
Confidence            57899999999999999863    3566788999999999999986    88999999999999998763   1 22345


Q ss_pred             ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCC-C--eeeEEEec
Q psy3840          76 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHS-D--KPVKSFEG  118 (131)
Q Consensus        76 ~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~-~--~~~~~~~~  118 (131)
                      ..+...+.+++|+|++. |++++.|+.|++|+... +  .++..+..
T Consensus       259 ~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~  305 (316)
T 3bg1_A          259 HKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNK  305 (316)
T ss_dssp             EECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC-
T ss_pred             hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeeccC
Confidence            56778999999999987 89999999999999863 3  44555543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.86  E-value=2e-21  Score=123.00  Aligned_cols=114  Identities=15%  Similarity=0.097  Sum_probs=97.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCc----eeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSL----KSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDA-ASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~-~~~~~~~~~~   76 (131)
                      +|+|++++|++++.|+.|++|++....    ...+..|...|.+++|+|+++ ++++++.|+.+++||+ .+++. ..+.
T Consensus        18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~   96 (342)
T 1yfq_A           18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALT   96 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence            478999999999999999999987333    566678999999999999999 9999999999999999 77754 6677


Q ss_pred             c--CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCC---------CeeeEEEe
Q psy3840          77 F--HSAPALDVDWQSNTSFASCSTDQHIHVCKLHS---------DKPVKSFE  117 (131)
Q Consensus        77 ~--~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~---------~~~~~~~~  117 (131)
                      .  |...+.+++|+|...+++++.|+.|++||+++         ++++..+.
T Consensus        97 ~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  148 (342)
T 1yfq_A           97 NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             ccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence            7  88999999999933389999999999999987         66665555

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=1.3e-20  Score=119.50  Aligned_cols=115  Identities=11%  Similarity=0.033  Sum_probs=88.3

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeeccccc---ccEEEEEEcCCCCEE------------EEEeCCCcEEEEECCCcc
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHK---GPIFALKWNKRGNYI------------LSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~---~~i~~~~~~~~~~~~------------~s~~~d~~i~~~d~~~~~   70 (131)
                      ++..|++|+.|++|++||+. ++.+.++.+|.   ..+.+++|+|++..+            ++|+.|+++++||..+++
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence            67889999999999999998 88888887654   367778999999876            567889999999999998


Q ss_pred             eeeeee-----cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          71 CEQQFS-----FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        71 ~~~~~~-----~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      .+..+.     +|...+.+.+++  +. +++++.|++|+|||+++++++.++.+|...+
T Consensus       272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v  328 (356)
T 2w18_A          272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH  328 (356)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CC
T ss_pred             EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe
Confidence            776542     444444444443  44 7889999999999999999999999886643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=3e-20  Score=133.83  Aligned_cols=115  Identities=22%  Similarity=0.385  Sum_probs=106.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNK--RGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +|+|+++++++++.|+.|++||+. ++.+..+.+|...+.+++|+|  ++..+++++.|+.+++||+++++.+..+.+|.
T Consensus       664 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~  743 (1249)
T 3sfz_A          664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT  743 (1249)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred             EEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence            479999999999999999999987 788888899999999999999  56689999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..+.+++|+|++. +++++.|+.|++||+++++....+.
T Consensus       744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  782 (1249)
T 3sfz_A          744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN  782 (1249)
T ss_dssp             SCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceec
Confidence            9999999999987 8999999999999999988776654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.86  E-value=8.8e-20  Score=115.48  Aligned_cols=121  Identities=12%  Similarity=0.085  Sum_probs=102.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCC-C---ceeecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCc------cee
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDG-S---LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASG------QCE   72 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~-~---~~~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~------~~~   72 (131)
                      |++++  +++++.++.|++||+.. .   .......|...+.+++|+| +++++++++.|+.+++|+++..      +..
T Consensus       158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~  235 (342)
T 1yfq_A          158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence            45544  99999999999999875 2   2234456788999999999 9999999999999999999876      677


Q ss_pred             eeeecCCC---------CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc-cceEEEE
Q psy3840          73 QQFSFHSA---------PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH-TRVYYLA  126 (131)
Q Consensus        73 ~~~~~~~~---------~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~  126 (131)
                      ..+..+..         .+.+++|+|++. +++++.|+.|++||+++++.+..+..| ...+..+
T Consensus       236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~  300 (342)
T 1yfq_A          236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI  300 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred             eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEe
Confidence            77777654         899999999977 999999999999999999999999988 7776554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.86  E-value=7.3e-20  Score=116.27  Aligned_cols=115  Identities=17%  Similarity=0.232  Sum_probs=94.6

Q ss_pred             cccCC---CCEEEEEeCCCeEEEEcCC-CC-ceeecccccccEEEEE------EcCCCCEEEEEeCCCcEEEEECCCcc-
Q psy3840           3 SSRNN---GSFLATGSYDGYARIWTSD-GS-LKSTLGQHKGPIFALK------WNKRGNYILSAGVDKTTIIWDAASGQ-   70 (131)
Q Consensus         3 ~~~~~---~~~l~~~~~d~~i~~~~~~-~~-~~~~~~~~~~~i~~~~------~~~~~~~~~s~~~d~~i~~~d~~~~~-   70 (131)
                      +|+|+   ++++++|+.|+.|++||+. ++ .+..+.+|...|.++.      |+|+++.+++++.|+.+++||+++++ 
T Consensus        72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~  151 (357)
T 3i2n_A           72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD  151 (357)
T ss_dssp             ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred             EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence            46777   7999999999999999987 44 6788889999999995      46889999999999999999999876 


Q ss_pred             eeeeeecCCC----CeEEEE----EcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          71 CEQQFSFHSA----PALDVD----WQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        71 ~~~~~~~~~~----~v~~~~----~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .+..+..+..    .+.++.    |+|++. +++++.|+.|++||+++++......
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  207 (357)
T 3i2n_A          152 PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN  207 (357)
T ss_dssp             CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC
Confidence            5666654433    788888    567776 8899999999999999988755543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.86  E-value=6.3e-20  Score=118.29  Aligned_cols=115  Identities=24%  Similarity=0.281  Sum_probs=89.5

Q ss_pred             cccCCCC-EEEEEeCCCeEEEEcCCC--Cceeec---------------ccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3840           3 SSRNNGS-FLATGSYDGYARIWTSDG--SLKSTL---------------GQHKGPIFALKWNKRGNYILSAGVDKTTIIW   64 (131)
Q Consensus         3 ~~~~~~~-~l~~~~~d~~i~~~~~~~--~~~~~~---------------~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~   64 (131)
                      +|+|+++ ++++|+.||.|++||+..  .....+               ..|...+.+++|+|+++++++++.|+.+++|
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            4788888 589999999999999862  122222               5688999999999999999999999999999


Q ss_pred             ECCCcc-----------------------------------------------eeeeeecCCCCeEEEEEcCCCc-EEEE
Q psy3840          65 DAASGQ-----------------------------------------------CEQQFSFHSAPALDVDWQSNTS-FASC   96 (131)
Q Consensus        65 d~~~~~-----------------------------------------------~~~~~~~~~~~v~~~~~~~~~~-~~~~   96 (131)
                      |+++++                                               .+..+..|...|.+++|+|++. ++++
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  352 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG  352 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence            987643                                               2334456778999999999977 8999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEe
Q psy3840          97 STDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        97 ~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +.|+.|++||+++++++....
T Consensus       353 ~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          353 SRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             ETTSCEEEEEECC--------
T ss_pred             CCCCeEEEEeCCCCCccCCCC
Confidence            999999999999988776543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.85  E-value=1.1e-19  Score=117.08  Aligned_cols=123  Identities=18%  Similarity=0.333  Sum_probs=103.6

Q ss_pred             cccC-CCCEEEEEeCCCeEEEEcCC-CCceeec-------------ccccccEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q psy3840           3 SSRN-NGSFLATGSYDGYARIWTSD-GSLKSTL-------------GQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDA   66 (131)
Q Consensus         3 ~~~~-~~~~l~~~~~d~~i~~~~~~-~~~~~~~-------------~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~   66 (131)
                      +|+| ++++|++|+.||.|++||+. +.....+             .+|...|.+++|+| ++.++++++.|+.+++||+
T Consensus        50 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  129 (408)
T 4a11_B           50 DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT  129 (408)
T ss_dssp             EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEET
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeC
Confidence            4788 99999999999999999987 3322222             25899999999999 7889999999999999999


Q ss_pred             CCcceeeeeecCCCCeEEEEEcCC---C-cEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          67 ASGQCEQQFSFHSAPALDVDWQSN---T-SFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        67 ~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .+++....+. +...+.++.+.|.   + .+++++.++.|++||+++++.+..+..|...+..+
T Consensus       130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          130 NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence            9998877776 5678999999884   3 38899999999999999999999998887766543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.85  E-value=5.9e-20  Score=119.84  Aligned_cols=115  Identities=18%  Similarity=0.315  Sum_probs=90.7

Q ss_pred             ccCC-CCEEEEE--eCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCcceeeeeec
Q psy3840           4 SRNN-GSFLATG--SYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         4 ~~~~-~~~l~~~--~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~--~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      |+|. +..++++  +.|++|++||+. ++....+. +...+.++.|+|++..+++++  .|+.|++||+++++++..+.+
T Consensus       284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g  362 (420)
T 4gga_A          284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG  362 (420)
T ss_dssp             ECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred             eCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC
Confidence            4554 4555553  579999999987 55555554 445788999999999888765  689999999999999999999


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      |...|++++|+|++. |++++.|+.|++||+.+..+....+.+
T Consensus       363 H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~  405 (420)
T 4gga_A          363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRERE  405 (420)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------
T ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhc
Confidence            999999999999987 999999999999999877665555443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.85  E-value=2.4e-19  Score=116.94  Aligned_cols=121  Identities=24%  Similarity=0.402  Sum_probs=100.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeec--ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~--~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +|++ ++.|++|. |++|++||.. ++....+  .+|...|++++|+|+++++++|+.|+.|++||+.+++.+..+.+|.
T Consensus       112 ~wS~-~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~  189 (420)
T 4gga_A          112 DWSS-GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS  189 (420)
T ss_dssp             EECT-TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EECC-CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC
Confidence            4665 46888876 8999999987 5555544  4677889999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCC-eeeEEEecccceEEEE
Q psy3840          80 APALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~  126 (131)
                      ..+.++.+++ ..+++++.|+.+++||.+.. ..+..+.+|...+..+
T Consensus       190 ~~v~~~s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~  236 (420)
T 4gga_A          190 ARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL  236 (420)
T ss_dssp             SCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             CceEEEeeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeee
Confidence            9999988854 24899999999999999875 5566777777766543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=7.1e-20  Score=127.05  Aligned_cols=123  Identities=20%  Similarity=0.364  Sum_probs=103.5

Q ss_pred             ccCC--CCEEEEEeCCCeEEEEcCCCC---ceeecccccccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCcc--eeee
Q psy3840           4 SRNN--GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKR--GNYILSAGVDKTTIIWDAASGQ--CEQQ   74 (131)
Q Consensus         4 ~~~~--~~~l~~~~~d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~--~~~~~s~~~d~~i~~~d~~~~~--~~~~   74 (131)
                      |+++  ++++++|+.||.|++||+...   .+..+.+|...|.+++|+|+  +..+++++.||.+++||++++.  ....
T Consensus        61 ~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           61 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             ECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred             ecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence            5666  999999999999999998743   56777889999999999998  9999999999999999998873  3445


Q ss_pred             eecCCCCeEEEEEcC-------------CCc-EEEEeCCCcEEEEeCCCC----eeeEEEecccceEEEE
Q psy3840          75 FSFHSAPALDVDWQS-------------NTS-FASCSTDQHIHVCKLHSD----KPVKSFEGHTRVYYLA  126 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~-------------~~~-~~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~  126 (131)
                      +..+...+.++.|+|             ++. +++++.|+.|++||++++    ..+..+.+|...+..+
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l  210 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  210 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEE
Confidence            667888999999999             344 999999999999999877    5566777787766443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.85  E-value=1.8e-19  Score=117.93  Aligned_cols=119  Identities=25%  Similarity=0.412  Sum_probs=103.0

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee---eeeecCCC
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE---QQFSFHSA   80 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~---~~~~~~~~   80 (131)
                      ..+++.+++|+.||.|++||+. ++.+..+.+|...|.+++|+  +..+++++.|+.+++||+++++..   ..+.+|..
T Consensus       180 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  257 (435)
T 1p22_A          180 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  257 (435)
T ss_dssp             ECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred             EECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC
Confidence            4478999999999999999987 77888889999999999996  459999999999999999987665   56677888


Q ss_pred             CeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          81 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .+.++++. ...+++++.|+.|++||+++++.+..+.+|...+..+
T Consensus       258 ~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  302 (435)
T 1p22_A          258 AVNVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL  302 (435)
T ss_dssp             CEEEEEEE-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             cEEEEEeC-CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEE
Confidence            99999992 2348999999999999999999999999888776543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.84  E-value=1e-20  Score=122.65  Aligned_cols=114  Identities=13%  Similarity=0.120  Sum_probs=83.4

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCcceeeee---------
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG-NYILSAGVDKTTIIWDAASGQCEQQF---------   75 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~s~~~d~~i~~~d~~~~~~~~~~---------   75 (131)
                      ++++|++|+.|++|++||+. +..+..+..|..++.+++|+|++ .++++++.|++|++||+++++.....         
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            78999999999999999986 66777788899999999999976 58999999999999999876543221         


Q ss_pred             ----------------ecCCCCeEEEEEc-CCCc-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          76 ----------------SFHSAPALDVDWQ-SNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        76 ----------------~~~~~~v~~~~~~-~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                                      .++...+.++.|. |++. +++++.|+.+++||+.+++....+..|.
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~  297 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST  297 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec
Confidence                            2355678888886 6766 8999999999999998877666555443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.84  E-value=1.3e-19  Score=113.56  Aligned_cols=100  Identities=14%  Similarity=0.272  Sum_probs=87.1

Q ss_pred             EEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCcceeeeeecCCCCeEEEEEcC
Q psy3840          12 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG--VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS   89 (131)
Q Consensus        12 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~   89 (131)
                      ++++.++.|++||...........+...+..+.|+|++..+++++  .|+.|++||+++++.+..+.+|...|++++|+|
T Consensus       215 ~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp  294 (318)
T 4ggc_A          215 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP  294 (318)
T ss_dssp             EECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence            456778999999988555555566778899999999988877654  699999999999999999999999999999999


Q ss_pred             CCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          90 NTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        90 ~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      ++. |++++.|+.|++||+.+..
T Consensus       295 dg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          295 DGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCEEEEEecCCeEEEEECCCCC
Confidence            987 9999999999999997654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.84  E-value=1e-18  Score=109.50  Aligned_cols=120  Identities=23%  Similarity=0.390  Sum_probs=97.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeec--ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~--~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +||+++ +|++|. |++|++||+. ++.+..+  .+|...|.+++|+|+++++++|+.|+++++||+++++.+..+..|.
T Consensus        32 ~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~  109 (318)
T 4ggc_A           32 DWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS  109 (318)
T ss_dssp             EECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCcc
Confidence            467764 777765 8999999987 6666554  4677889999999999999999999999999999999999999988


Q ss_pred             CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCC-eeeEEEecccceEEE
Q psy3840          80 APALDVDWQSNTSFASCSTDQHIHVCKLHSD-KPVKSFEGHTRVYYL  125 (131)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~  125 (131)
                      ..+.++.+.+ ..+++++.++.+.+|+.... ..+..+.+|...+..
T Consensus       110 ~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (318)
T 4ggc_A          110 ARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG  155 (318)
T ss_dssp             SCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred             ceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEE
Confidence            8887766543 24889999999999998876 455666777665544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.84  E-value=4.7e-20  Score=117.01  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             cccCCCCEE------------EEEeCCCeEEEEcCC-CCceeec-----ccccccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3840           3 SSRNNGSFL------------ATGSYDGYARIWTSD-GSLKSTL-----GQHKGPIFALKWNKRGNYILSAGVDKTTIIW   64 (131)
Q Consensus         3 ~~~~~~~~l------------~~~~~d~~i~~~~~~-~~~~~~~-----~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~   64 (131)
                      +|+|++.++            ++|+.|++|++||.. ++.+..+     .+|.+.+.+..+  ++..+++++.|++|++|
T Consensus       233 afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIW  310 (356)
T 2w18_A          233 AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIW  310 (356)
T ss_dssp             EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred             EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEE
Confidence            478888876            567889999999987 4444333     356655444443  37889999999999999


Q ss_pred             ECCCcceeeeeecCCCCeE-EEEEcCCCc-EEEEeCCCcEEEEeC
Q psy3840          65 DAASGQCEQQFSFHSAPAL-DVDWQSNTS-FASCSTDQHIHVCKL  107 (131)
Q Consensus        65 d~~~~~~~~~~~~~~~~v~-~~~~~~~~~-~~~~~~d~~i~i~d~  107 (131)
                      |+.+++++.++.+|...+. .++|+|+++ +++|+.|++|+|||+
T Consensus       311 Dl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          311 DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999999988877655 589999987 899999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=3.3e-19  Score=116.87  Aligned_cols=114  Identities=19%  Similarity=0.399  Sum_probs=76.4

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      +++.+++|+.|+.|++||+. ++.+..+.+|...+.++.+  ++..+++++.|+.+++||+++++.+..+..|...+.++
T Consensus       208 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  285 (445)
T 2ovr_B          208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL  285 (445)
T ss_dssp             ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE
T ss_pred             cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEE
Confidence            35667777777777777765 5555666667777777766  56667777777777777777766666666666677777


Q ss_pred             EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      .| ....+++++.|+.|++||+++++++..+.+|...+
T Consensus       286 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v  322 (445)
T 2ovr_B          286 QF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT  322 (445)
T ss_dssp             EE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE
T ss_pred             EE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE
Confidence            77 22236777777777777777777776666665544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.83  E-value=1.5e-19  Score=115.79  Aligned_cols=108  Identities=19%  Similarity=0.314  Sum_probs=88.3

Q ss_pred             cccCCCCEEEEEeCCCe-EEEEcCC-CCceeecc-c-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee--eee-
Q psy3840           3 SSRNNGSFLATGSYDGY-ARIWTSD-GSLKSTLG-Q-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQF-   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~-i~~~~~~-~~~~~~~~-~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~--~~~-   75 (131)
                      +|+|++++|++|+.|++ |++||+. ++.+..+. + |.+.|.+++|+|+++++++++.|+++++||++.+...  ..+ 
T Consensus       202 ~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~  281 (355)
T 3vu4_A          202 RLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK  281 (355)
T ss_dssp             EECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc
Confidence            47999999999999998 9999987 77788887 5 9999999999999999999999999999999764311  110 


Q ss_pred             -------------------e-cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          76 -------------------S-FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        76 -------------------~-~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                                         . ........++|++++. +++++.||.+++|++..+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          282 GWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             TTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             ceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                               0 0112236789999986 899999999999998653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.81  E-value=1.7e-18  Score=112.91  Aligned_cols=123  Identities=8%  Similarity=-0.006  Sum_probs=102.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCcee-----ecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKS-----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~-----~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      +|+|++.++++++.++.|++||+. ++...     .+.+|.+.+.+++|+|++..+++++.|+.+++||+++++.+..+.
T Consensus       129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~  208 (433)
T 3bws_A          129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD  208 (433)
T ss_dssp             EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc
Confidence            467877778888888999999987 55544     345788899999999999999999999999999999999888888


Q ss_pred             cCCCCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          77 FHSAPALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      .+...+.+++|+|++. + +++..++.|++||+++++.+..+..+......
T Consensus       209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  259 (433)
T 3bws_A          209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGL  259 (433)
T ss_dssp             CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEE
T ss_pred             CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEE
Confidence            8888999999999976 5 45557899999999999888877665544333

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.78  E-value=7.1e-17  Score=104.00  Aligned_cols=122  Identities=9%  Similarity=0.081  Sum_probs=97.5

Q ss_pred             cccCCCCEE-EEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFL-ATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l-~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +|+|+++.+ ++++.|+.|++||+. ++.+..+..+ ..+.+++|+|+++.++. +..++.+++||+.+++.+..+..+ 
T Consensus        38 ~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-  115 (391)
T 1l0q_A           38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-  115 (391)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-
T ss_pred             EECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-
Confidence            478999987 566689999999987 5555555544 48999999999997755 456799999999999888777654 


Q ss_pred             CCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          80 APALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ..+.+++|+|+++ + ++++.++.|++||+++++.+..+..+.......
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  164 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIA  164 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEE
Confidence            5789999999987 5 678889999999999999888887665554333

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.77  E-value=8.5e-17  Score=103.63  Aligned_cols=117  Identities=10%  Similarity=0.057  Sum_probs=94.3

Q ss_pred             CEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840           9 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD   86 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~-~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~   86 (131)
                      ..+++++.|+.|++||+. ++.+..+..| ..+.+++|+|+++.+ ++++.++.+++||+.+++.+..+..+. .+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            467888889999999987 5666666655 458999999999876 677789999999999999888877654 899999


Q ss_pred             EcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840          87 WQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        87 ~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  127 (131)
                      |+|++. + +++..++.|++||+++++.+..+..+.......+
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~  123 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL  123 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEE
Confidence            999987 5 4555679999999999998888876665544433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.76  E-value=8.2e-17  Score=104.91  Aligned_cols=114  Identities=5%  Similarity=0.018  Sum_probs=95.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      +|++++.++++++.|+.|++||+. ++.+..+..|...+.+++|+|+++.+++ ++.++.+++||+++++.+..+..+ .
T Consensus       176 ~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~  254 (433)
T 3bws_A          176 SIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-G  254 (433)
T ss_dssp             EEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-S
T ss_pred             EEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-C
Confidence            357889999999999999999987 5677777788889999999999998754 447999999999999887777653 4


Q ss_pred             CeEEEEEcCCCc-EEEEe--------CCCcEEEEeCCCCeeeEEEe
Q psy3840          81 PALDVDWQSNTS-FASCS--------TDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~--------~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .+..++|+|++. +++++        .|+.|++||+++++.+..+.
T Consensus       255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~  300 (433)
T 3bws_A          255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG  300 (433)
T ss_dssp             EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc
Confidence            689999999986 66666        47899999999988776653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.74  E-value=5.2e-16  Score=101.41  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=87.4

Q ss_pred             cccCCCCEEEEEeCCC---eEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCc--EEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYDG---YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKT--TIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~--i~~~d~~~~~~~~~~~   76 (131)
                      +|+|+|+.|++++.++   .|++||+.......+..|.+.+.+++|+|+++.++ +++.++.  |++||+.+++. ..+.
T Consensus       185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~  263 (415)
T 2hqs_A          185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT  263 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc
Confidence            5899999999998875   89999998555556777888999999999999877 6666554  99999988775 4566


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeC-CC--cEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQSNTS-FASCST-DQ--HIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~  112 (131)
                      .+...+.+++|+|+++ ++.++. ++  .|++||+.+++.
T Consensus       264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            6777899999999987 666654 44  688889887754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.73  E-value=8.7e-17  Score=105.68  Aligned_cols=107  Identities=15%  Similarity=0.166  Sum_probs=83.4

Q ss_pred             cccCC-CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC--
Q psy3840           3 SSRNN-GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--   78 (131)
Q Consensus         3 ~~~~~-~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~--   78 (131)
                      +|+|+ +++|++++.||+|++||+. +..+....+|...+.+++|+|+++++++++.|+.+++||++ ++....+..+  
T Consensus       156 ~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~  234 (434)
T 2oit_A          156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF  234 (434)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT
T ss_pred             EECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc
Confidence            47887 8899999999999999987 44444556788899999999999999999999999999998 5444444332  


Q ss_pred             -----CCCeEEEEEcCCCcEE--EEeCCC------cEEEEeCCCC
Q psy3840          79 -----SAPALDVDWQSNTSFA--SCSTDQ------HIHVCKLHSD  110 (131)
Q Consensus        79 -----~~~v~~~~~~~~~~~~--~~~~d~------~i~i~d~~~~  110 (131)
                           ...+.++.|++++.++  ....+|      .+++|++++.
T Consensus       235 ~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          235 YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                 2268899999987743  233332      3899999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.71  E-value=2.5e-15  Score=98.23  Aligned_cols=112  Identities=15%  Similarity=0.164  Sum_probs=89.3

Q ss_pred             CCEEEEEeCC------CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC---cEEEEECCCcceeeeeecC
Q psy3840           8 GSFLATGSYD------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK---TTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         8 ~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~---~i~~~d~~~~~~~~~~~~~   78 (131)
                      +..++.++.+      +.|++||..+.....+..|...+.+++|+|+++.+++++.++   .+++||+.+++.. .+..+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~  221 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF  221 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence            5666666554      789999999877888888999999999999999999998875   8999999988765 45556


Q ss_pred             CCCeEEEEEcCCCc-EE-EEeCCC--cEEEEeCCCCeeeEEEecccc
Q psy3840          79 SAPALDVDWQSNTS-FA-SCSTDQ--HIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      ...+.+++|+|+++ ++ +++.++  .|++||+++++. ..+..|..
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~  267 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS  267 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC
Confidence            77899999999987 65 555555  499999988765 44444543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.68  E-value=3.9e-15  Score=100.30  Aligned_cols=114  Identities=11%  Similarity=0.086  Sum_probs=95.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA--ASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~--~~~~~~~~~~~~~   79 (131)
                      .++|++..+++++.+++|.+||.. ++.+.++..+.. +..++|+|+++++++++.++.|++||+  .+++.+..+.. .
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence            477888889999999999999987 677777763333 889999999999999999999999999  78888887774 4


Q ss_pred             CCeEEEEEcC----CCc-EEEEe-CCCcEEEEeCCCCeeeEEEec
Q psy3840          80 APALDVDWQS----NTS-FASCS-TDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        80 ~~v~~~~~~~----~~~-~~~~~-~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ..+..++|+|    +++ +++++ .++.|.+||..+++++..+..
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~  266 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST  266 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecc
Confidence            5678999999    987 66665 589999999999998888764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.64  E-value=8.1e-15  Score=101.31  Aligned_cols=113  Identities=12%  Similarity=0.122  Sum_probs=88.1

Q ss_pred             cccCCCCEEEEEeC-CC-----eEEEEcCC-CCceeeccccc------------------------ccEEEEEEcCCCCE
Q psy3840           3 SSRNNGSFLATGSY-DG-----YARIWTSD-GSLKSTLGQHK------------------------GPIFALKWNKRGNY   51 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~-----~i~~~~~~-~~~~~~~~~~~------------------------~~i~~~~~~~~~~~   51 (131)
                      +|+|||++|++++. |+     .|.+||+. ++....+..+.                        ..+..++|+|+|++
T Consensus        43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~  122 (741)
T 2ecf_A           43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR  122 (741)
T ss_dssp             EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred             eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence            58999999999998 88     89999987 44444443332                        23788999999999


Q ss_pred             EEEEeCCCcEEEEECCCcc--eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          52 ILSAGVDKTTIIWDAASGQ--CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        52 ~~s~~~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +++++. +.+++||+.++.  ....+..+...+..++|+|+++ ++.++ ++.|++||+.+++......
T Consensus       123 l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          123 LLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             EEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred             EEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc
Confidence            998886 899999998873  3455666677899999999998 55554 5699999999887655443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.62  E-value=2.8e-14  Score=102.14  Aligned_cols=117  Identities=16%  Similarity=0.174  Sum_probs=95.6

Q ss_pred             cccCCCCEEEEEeCCCeEE-EEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYAR-IWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+ +++.++.++.+..+. +|+..+.....+.+|...+..++|+|+++.+++++.++.+++||+.+++.......+...
T Consensus       344 ~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~  422 (1045)
T 1k32_A          344 GGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM  422 (1045)
T ss_dssp             CSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred             eEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence            467 889999988887888 889886555555677788999999999999999999999999999999887777677788


Q ss_pred             eEEEEEcCCCc-EEEEeCC----------CcEEEEeCCCCeeeEEEecccc
Q psy3840          82 ALDVDWQSNTS-FASCSTD----------QHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      +..++|+|+++ ++.++.+          +.|++||+.+++ +..+..|..
T Consensus       423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~  472 (1045)
T 1k32_A          423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS  472 (1045)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS
T ss_pred             ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc
Confidence            89999999988 6666543          389999999877 455544443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=1.6e-14  Score=89.21  Aligned_cols=110  Identities=13%  Similarity=0.175  Sum_probs=86.6

Q ss_pred             cccCCCCEEE-EEeCCCeEEEEcC--CCCceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECC-Ccceeeeeec
Q psy3840           3 SSRNNGSFLA-TGSYDGYARIWTS--DGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAA-SGQCEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~-~~~~d~~i~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~-~~~~~~~~~~   77 (131)
                      .|+|+++.++ ++..++.+++|++  .+.....+..+...+.++.|+|+++.++.++ .++.+++|++. .+.....+..
T Consensus       135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred             EECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence            5899999887 6778999999985  4555666777888899999999999877665 58899999886 4555666666


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCC-----------CcEEEEeCCCCee
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTD-----------QHIHVCKLHSDKP  112 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d-----------~~i~i~d~~~~~~  112 (131)
                      +...+..+.|+|+++ ++.++.+           +.|++||+++++.
T Consensus       215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            667788999999987 6666554           5699999988755

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.61  E-value=1.6e-13  Score=87.09  Aligned_cols=123  Identities=15%  Similarity=0.146  Sum_probs=93.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc----ccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ----HKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~----~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~~~~~~   76 (131)
                      +++|+++.+++++.++.|.+||.. ++....+..    +...+..++|+|+++.++.++. ++.+.+||+.+++.+..+.
T Consensus       191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            478999999999999999999987 444444432    4456788999999997776665 5899999999998887776


Q ss_pred             cCCCCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840          77 FHSAPALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  127 (131)
                      ...  ...+.|+|+++ + ++...++.|.+||+.+++.+..+.....+...++
T Consensus       271 ~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  321 (353)
T 3vgz_A          271 APE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLAL  321 (353)
T ss_dssp             CSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             cCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEE
Confidence            533  35689999976 4 4445689999999999998888776554443333

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.61  E-value=2.2e-15  Score=101.85  Aligned_cols=108  Identities=9%  Similarity=0.008  Sum_probs=89.8

Q ss_pred             cccCCCCEEEEEeCC----CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSFLATGSYD----GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK--TTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~--~i~~~d~~~~~~~~~~~   76 (131)
                      +|+|||++|+.++.+    ..|.+||+.+.....+..|.+.+..++|+|+|+.++++..++  .|++||+.+++.. .+.
T Consensus       156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~  234 (582)
T 3o4h_A          156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE  234 (582)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred             EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence            478999999988776    779999988656667788888899999999999999888888  8999999988876 555


Q ss_pred             cCCCCeEEEE--------EcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          77 FHSAPALDVD--------WQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        77 ~~~~~v~~~~--------~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      .+...+..+.        |+|++. +++++.++.+++|++  ++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          235 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence            5555566666        999987 678889999999998  6544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.61  E-value=2.1e-13  Score=86.09  Aligned_cols=123  Identities=7%  Similarity=0.019  Sum_probs=89.2

Q ss_pred             ccCCCCE-EEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcce-eeeeecCC
Q psy3840           4 SRNNGSF-LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQC-EQQFSFHS   79 (131)
Q Consensus         4 ~~~~~~~-l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~-~~~~~~~~   79 (131)
                      |.+++++ ++++..++.|.+||.. ++.+.....+.... .++|+|+++.+++++. ++.+.+||+.+++. ...+..+.
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            4555555 5667779999999987 66655555555566 9999999997666655 88999999999887 66666655


Q ss_pred             CCeEEEEEcCCCc-EEEEeCC-C--cEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840          80 APALDVDWQSNTS-FASCSTD-Q--HIHVCKLHSDKPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~  127 (131)
                      .+..+++|+|+++ ++++..+ +  .|.+||+++++.+..+..+..+...++
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  135 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAI  135 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEE
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEE
Confidence            5555599999987 5644444 2  899999999988887766554443333

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.61  E-value=4.8e-14  Score=97.49  Aligned_cols=96  Identities=17%  Similarity=0.113  Sum_probs=76.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC---ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +|+|||++|++++. +.|.+||+.+.   ....+..+...+..++|+|+|+.++.++. +.|++||+.+++.........
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCc
Confidence            48999999999886 89999999865   66677778888999999999999998874 589999999877654433322


Q ss_pred             CC----------------eEEEEEcCCCc-EEEEeCCC
Q psy3840          80 AP----------------ALDVDWQSNTS-FASCSTDQ  100 (131)
Q Consensus        80 ~~----------------v~~~~~~~~~~-~~~~~~d~  100 (131)
                      ..                +..+.|+||++ |+.++.|+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            21                47799999987 77776554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.58  E-value=7.6e-15  Score=101.13  Aligned_cols=113  Identities=12%  Similarity=0.169  Sum_probs=86.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccc---cEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKG---PIFALKWNKRGNYILSAGVD---------KTTIIWDAASG   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~---~i~~~~~~~~~~~~~s~~~d---------~~i~~~d~~~~   69 (131)
                      +|+|+|+++++ +.|++|++||+. ++....+..|..   .+.+++|+|+|+++++++.+         +.+++||+.++
T Consensus        23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  101 (723)
T 1xfd_A           23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (723)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence            58999997776 689999999987 555555555554   48999999999999998764         67889999988


Q ss_pred             ceeeeee---cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          70 QCEQQFS---FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        70 ~~~~~~~---~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      +. ..+.   .+...+..++|+|+++ ++.++. +.|++||+.+++..+....
T Consensus       102 ~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A          102 DP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             CC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             ce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence            75 3333   2333478899999987 666654 7999999998877665544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.58  E-value=3.2e-13  Score=91.10  Aligned_cols=111  Identities=8%  Similarity=0.042  Sum_probs=90.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcC--C-CCceeecccccccEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCcceeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTS--D-GSLKSTLGQHKGPIFALKWNK----RGNYILSAGV-DKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~--~-~~~~~~~~~~~~~i~~~~~~~----~~~~~~s~~~-d~~i~~~d~~~~~~~~~   74 (131)
                      .++|+++++++++.|+.|++||+  . ++.+.++. +......++|+|    +++++++++. ++++.+||..+++++..
T Consensus       185 ~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~  263 (543)
T 1nir_A          185 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI  263 (543)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence            48999999999999999999999  4 55566655 344579999999    9999998885 89999999999988877


Q ss_pred             eecC-----------CCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeE
Q psy3840          75 FSFH-----------SAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        75 ~~~~-----------~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                      +...           ...+..+.++|++.  +++...++.|.+||+.+.+.+.
T Consensus       264 i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~  316 (543)
T 1nir_A          264 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT  316 (543)
T ss_dssp             EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred             ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence            7642           22688999999754  6777788999999998765433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.57  E-value=2.8e-13  Score=85.96  Aligned_cols=116  Identities=9%  Similarity=0.085  Sum_probs=91.8

Q ss_pred             cccCCCCEEEEEe--CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec--
Q psy3840           3 SSRNNGSFLATGS--YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~--~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~--   77 (131)
                      .++|+++.+++++  .++.|.+||.. ++.+..+..+...+..++|+|+++.+++++.++.+.+||+.+++....+..  
T Consensus       147 ~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~  226 (353)
T 3vgz_A          147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD  226 (353)
T ss_dssp             EEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             EECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC
Confidence            4788999887776  47889999987 555555554555678899999999999999999999999999988777654  


Q ss_pred             --CCCCeEEEEEcCCCc-EEEE-eCCCcEEEEeCCCCeeeEEEec
Q psy3840          78 --HSAPALDVDWQSNTS-FASC-STDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        78 --~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                        +...+..++|+|++. ++.+ ..++.|.+||+.+++.+..+..
T Consensus       227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence              344577899999976 5444 4558999999999988777654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.55  E-value=8.4e-14  Score=95.99  Aligned_cols=115  Identities=10%  Similarity=0.096  Sum_probs=84.7

Q ss_pred             cccCCCCEEEEEeCC---------CeEEEEcCCCCceeecc---cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840           3 SSRNNGSFLATGSYD---------GYARIWTSDGSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---------~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      +|||||++|++++.+         +.+.+||+.+.....+.   .|...+..++|+|+|+.++.++. +.+++||+.+++
T Consensus        67 ~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~  145 (723)
T 1xfd_A           67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ  145 (723)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred             EECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence            489999999999764         77889998844333333   34445888999999999998876 789999999887


Q ss_pred             eeeeeecCCCC------------------eEEEEEcCCCc-EEEEeCCC-------------------------------
Q psy3840          71 CEQQFSFHSAP------------------ALDVDWQSNTS-FASCSTDQ-------------------------------  100 (131)
Q Consensus        71 ~~~~~~~~~~~------------------v~~~~~~~~~~-~~~~~~d~-------------------------------  100 (131)
                      .......+...                  +..++|+||++ |+.++.++                               
T Consensus       146 ~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  225 (723)
T 1xfd_A          146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (723)
T ss_dssp             CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence            66554433332                  37899999987 76665432                               


Q ss_pred             ---cEEEEeCCCCeeeEEEec
Q psy3840         101 ---HIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus       101 ---~i~i~d~~~~~~~~~~~~  118 (131)
                         .|++||+.+++....+..
T Consensus       226 ~~~~l~~~d~~~~~~~~~l~~  246 (723)
T 1xfd_A          226 PSISLHVIGLNGPTHDLEMMP  246 (723)
T ss_dssp             CEEEEEEEESSSSCCCEECCC
T ss_pred             CeeEEEEEECCCCceeEEeeC
Confidence               789999988775444443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.55  E-value=1.2e-12  Score=82.52  Aligned_cols=118  Identities=7%  Similarity=0.047  Sum_probs=83.3

Q ss_pred             cccCCCCEEEEEeCCC---eEEEEcCC-CCceeecccccccEEEEEEcCCCCEEE-EEeCCCc-EEEEECCCcceee---
Q psy3840           3 SSRNNGSFLATGSYDG---YARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKT-TIIWDAASGQCEQ---   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~---~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~-i~~~d~~~~~~~~---   73 (131)
                      +|+|++++++++..++   .|.+||+. ++.+..+.. ......++|+|++++++ +...++. +.+|++.....+.   
T Consensus        90 ~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~  168 (331)
T 3u4y_A           90 DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG  168 (331)
T ss_dssp             EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred             EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence            5789999999655553   89999987 444444443 34568999999998555 4455688 9999987543321   


Q ss_pred             -eeecCCCCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCCCee---eEEEecccc
Q psy3840          74 -QFSFHSAPALDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKP---VKSFEGHTR  121 (131)
Q Consensus        74 -~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~---~~~~~~~~~  121 (131)
                       ...........++|+|+++ + +++..++.|++||+++++.   +..+..+..
T Consensus       169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~  222 (331)
T 3u4y_A          169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL  222 (331)
T ss_dssp             EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred             CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC
Confidence             1112345678999999987 4 4555688999999998887   766654433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.53  E-value=3.3e-13  Score=85.41  Aligned_cols=109  Identities=4%  Similarity=-0.073  Sum_probs=82.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccccc-ccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHK-GPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~-~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      ++++++.++++++.++.|.+||.. ++.+..+..+. ..+..++|+|+++.++ +...++.+.+||+.+++.+..+....
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~   85 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   85 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence            467788899999999999999987 55555544332 1567899999998654 55568999999999988776665322


Q ss_pred             ------CCeEEEEEcCCCc-EEEEeCC------------CcEEEEeCCCCe
Q psy3840          80 ------APALDVDWQSNTS-FASCSTD------------QHIHVCKLHSDK  111 (131)
Q Consensus        80 ------~~v~~~~~~~~~~-~~~~~~d------------~~i~i~d~~~~~  111 (131)
                            ..+..++|+|+++ +++++.+            +.|.+||+.+++
T Consensus        86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B           86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence                  2377899999987 6666644            899999998743

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.51  E-value=3e-12  Score=79.01  Aligned_cols=118  Identities=13%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             cccCCCCEEEEEeC--CCeEEEE--cCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCC-cceeeeee
Q psy3840           3 SSRNNGSFLATGSY--DGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAAS-GQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~--d~~i~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~-~~~~~~~~   76 (131)
                      .|+|+++++++++.  ++...+|  +..+.....+..+. .+..++|+|+++.++ ++..++.+++|++.. +.....+.
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  169 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT  169 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence            58999999999983  3445554  55544444444443 488899999999877 777899999998642 23334555


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCC-CCeeeEEEecccc
Q psy3840          77 FHSAPALDVDWQSNTS-FASCS-TDQHIHVCKLH-SDKPVKSFEGHTR  121 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~  121 (131)
                      .+...+..+.|+|++. ++.++ .++.+.+|+++ .+..+..+..|..
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  217 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY  217 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc
Confidence            5667899999999987 55544 58889999876 4455555554443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.51  E-value=5.6e-13  Score=91.81  Aligned_cols=122  Identities=15%  Similarity=0.144  Sum_probs=88.1

Q ss_pred             cccCCCCEEEEEe---------------------------------CCCeEEEEcCCCCceeecc---cccccEEEEEEc
Q psy3840           3 SSRNNGSFLATGS---------------------------------YDGYARIWTSDGSLKSTLG---QHKGPIFALKWN   46 (131)
Q Consensus         3 ~~~~~~~~l~~~~---------------------------------~d~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~   46 (131)
                      +|+|||++|++++                                 .+..|.+||+.+.....+.   .|...+..++|+
T Consensus       187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  266 (706)
T 2z3z_A          187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS  266 (706)
T ss_dssp             EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE
Confidence            4899999999987                                 3467999998744433322   466789999999


Q ss_pred             CCCCEEEEEeCCC-----cEEEEECCCcceeeeee-c-CC---CCeEEEEEcC--CCc-EEEEeCCCcEEEEeCC-CCee
Q psy3840          47 KRGNYILSAGVDK-----TTIIWDAASGQCEQQFS-F-HS---APALDVDWQS--NTS-FASCSTDQHIHVCKLH-SDKP  112 (131)
Q Consensus        47 ~~~~~~~s~~~d~-----~i~~~d~~~~~~~~~~~-~-~~---~~v~~~~~~~--~~~-~~~~~~d~~i~i~d~~-~~~~  112 (131)
                      |+++.+++++.++     .+++||+.+++....+. . ..   ..+..+.|+|  +++ ++++..++.+++|++. ++..
T Consensus       267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~  346 (706)
T 2z3z_A          267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL  346 (706)
T ss_dssp             TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE
T ss_pred             CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE
Confidence            9999999877665     89999999884333332 1 11   1246789999  988 6777788888888875 5666


Q ss_pred             eEEEecccceEE
Q psy3840         113 VKSFEGHTRVYY  124 (131)
Q Consensus       113 ~~~~~~~~~~~~  124 (131)
                      +..+..+...+.
T Consensus       347 ~~~l~~~~~~v~  358 (706)
T 2z3z_A          347 IRQVTKGEWEVT  358 (706)
T ss_dssp             EEECCCSSSCEE
T ss_pred             EEecCCCCeEEE
Confidence            666666554443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.51  E-value=1.4e-12  Score=82.19  Aligned_cols=114  Identities=11%  Similarity=0.084  Sum_probs=86.6

Q ss_pred             cccCCCCEEEE-EeCCCeEEEEcCC-CCceeeccc-c----cccEEEEEEcCCCCEEEEEe------------CCCcEEE
Q psy3840           3 SSRNNGSFLAT-GSYDGYARIWTSD-GSLKSTLGQ-H----KGPIFALKWNKRGNYILSAG------------VDKTTII   63 (131)
Q Consensus         3 ~~~~~~~~l~~-~~~d~~i~~~~~~-~~~~~~~~~-~----~~~i~~~~~~~~~~~~~s~~------------~d~~i~~   63 (131)
                      +++|+++.+++ +..++.|.+||+. ++.+..+.. +    ...+..++|+|+++.+++++            .++.+.+
T Consensus        40 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v  119 (337)
T 1pby_B           40 MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL  119 (337)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred             EEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEE
Confidence            47899977655 4557899999987 555444432 1    22567889999999888886            5799999


Q ss_pred             EECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          64 WDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        64 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ||+.+++.+..+.. ...+..++|+|+++ ++++  ++.|++||+++++.+..+..+
T Consensus       120 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~  173 (337)
T 1pby_B          120 YDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQ  173 (337)
T ss_dssp             EETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECST
T ss_pred             EECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecc
Confidence            99998887777664 45678899999987 6665  688999999999887766543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.50  E-value=7.7e-13  Score=83.49  Aligned_cols=108  Identities=5%  Similarity=0.019  Sum_probs=79.7

Q ss_pred             cccCCCCEEEEEeCC-CeEEEEcCC--CCce---eecccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECC---Cccee
Q psy3840           3 SSRNNGSFLATGSYD-GYARIWTSD--GSLK---STLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAA---SGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d-~~i~~~~~~--~~~~---~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~---~~~~~   72 (131)
                      +|+|+++++++++.+ +.|.+|++.  ....   ..+..+ +.+..++|+|+++.+++++. ++.+.+||+.   ..+..
T Consensus        44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~  122 (343)
T 1ri6_A           44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV  122 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc
Confidence            478999999988886 899999986  2222   223322 37789999999998876665 8889999994   33444


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCCC-Cee
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCS-TDQHIHVCKLHS-DKP  112 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~~-~~~  112 (131)
                      ..+.. ...+..++|+|+++ +++++ .++.|++||+.+ ++.
T Consensus       123 ~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A          123 DVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             EEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             ccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            44443 34688899999986 66655 789999999987 543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.50  E-value=1.2e-13  Score=95.27  Aligned_cols=109  Identities=14%  Similarity=0.164  Sum_probs=80.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-Cceeecccccc---cEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKG---PIFALKWNKRGNYILSAGV---------DKTTIIWDAASG   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~---~i~~~~~~~~~~~~~s~~~---------d~~i~~~d~~~~   69 (131)
                      .|+|+++++++ +.|+.|++||+.+ +....+..+..   .+.+++|+|+|++++.++.         ++.+++||+.++
T Consensus        22 ~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g  100 (719)
T 1z68_A           22 NWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG  100 (719)
T ss_dssp             EESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             EECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence            47899965555 4699999999884 44444444433   3889999999999998876         689999999988


Q ss_pred             ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeE
Q psy3840          70 QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        70 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                      +.+.... ....+..++|+|+|+ ++.+ .++.|++||+.+++..+
T Consensus       101 ~~~~~~~-l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~  144 (719)
T 1z68_A          101 EFVRGNE-LPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQ  144 (719)
T ss_dssp             EECCSSC-CCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             cccccee-cCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEE
Confidence            7631111 124678899999998 6655 57899999998876543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.50  E-value=2.3e-13  Score=92.08  Aligned_cols=114  Identities=17%  Similarity=0.188  Sum_probs=84.4

Q ss_pred             cccCCCCE-EEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCcceeeeeec
Q psy3840           3 SSRNNGSF-LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d----~~i~~~d~~~~~~~~~~~~   77 (131)
                      +|+|+++. +++...++.+.+||+.+.....+..+..  .+++|+|+|+.+++++.+    +.+++||+.+++.. .+..
T Consensus       116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~  192 (582)
T 3o4h_A          116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS  192 (582)
T ss_dssp             EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC
T ss_pred             eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec
Confidence            56788754 3333344455599987555444444444  788999999999987766    77999999888754 5666


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCC--cEEEEeCCCCeeeEEEeccc
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQ--HIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~--~i~i~d~~~~~~~~~~~~~~  120 (131)
                      +...+..++|+|||+ ++++..++  .|++||+.+++.. .+..|.
T Consensus       193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~  237 (582)
T 3o4h_A          193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS  237 (582)
T ss_dssp             SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred             CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence            777889999999988 77777788  8999999988776 555443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.49  E-value=6.9e-13  Score=91.36  Aligned_cols=111  Identities=11%  Similarity=0.084  Sum_probs=82.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-----Cc-eeeccccccc--------------EEEEEEcCCCCEEEEEe------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-----SL-KSTLGQHKGP--------------IFALKWNKRGNYILSAG------   56 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-----~~-~~~~~~~~~~--------------i~~~~~~~~~~~~~s~~------   56 (131)
                      +|+|||+.|+.+ .++.|.+|++.+     .. ......+...              +.++.|+|+++.+++++      
T Consensus       127 ~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~  205 (706)
T 2z3z_A          127 DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV  205 (706)
T ss_dssp             EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS
T ss_pred             cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC
Confidence            589999999995 678999999865     33 3323333332              47899999999999887      


Q ss_pred             ---------------------------CCCcEEEEECCCcceeeeee--cCCCCeEEEEEcCCCc-EEEEeCCC-----c
Q psy3840          57 ---------------------------VDKTTIIWDAASGQCEQQFS--FHSAPALDVDWQSNTS-FASCSTDQ-----H  101 (131)
Q Consensus        57 ---------------------------~d~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~-~~~~~~d~-----~  101 (131)
                                                 .+..+++||+.+++......  .+...+..++|+|+++ +++++.++     .
T Consensus       206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  285 (706)
T 2z3z_A          206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK  285 (706)
T ss_dssp             CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEE
T ss_pred             ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeE
Confidence                                       44679999999887544332  3445688999999987 77766554     8


Q ss_pred             EEEEeCCCCeeeE
Q psy3840         102 IHVCKLHSDKPVK  114 (131)
Q Consensus       102 i~i~d~~~~~~~~  114 (131)
                      |++||+.+++...
T Consensus       286 v~~~d~~~g~~~~  298 (706)
T 2z3z_A          286 VNAYDAETGRFVR  298 (706)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECCCCceee
Confidence            9999999884333

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.48  E-value=6.7e-12  Score=79.18  Aligned_cols=117  Identities=9%  Similarity=0.074  Sum_probs=79.4

Q ss_pred             cccCCCCEEEEEe-CCCeEEEEcCCC-Ccee-----eccc-ccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC--cce
Q psy3840           3 SSRNNGSFLATGS-YDGYARIWTSDG-SLKS-----TLGQ-HKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS--GQC   71 (131)
Q Consensus         3 ~~~~~~~~l~~~~-~d~~i~~~~~~~-~~~~-----~~~~-~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~--~~~   71 (131)
                      +|+|+++.+++++ .++.|.+|++.. ..+.     .... ....+..++|+|++++++.++ .++.+.+|++..  ++.
T Consensus       135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~  214 (343)
T 1ri6_A          135 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI  214 (343)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred             EECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence            4789999888887 799999999863 3222     2222 234678899999999776554 789999999954  332


Q ss_pred             --eeeee---cC---CCCeEEEEEcCCCc-EE-EEeCCCcEEEEeCC--C--CeeeEEEecc
Q psy3840          72 --EQQFS---FH---SAPALDVDWQSNTS-FA-SCSTDQHIHVCKLH--S--DKPVKSFEGH  119 (131)
Q Consensus        72 --~~~~~---~~---~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~--~--~~~~~~~~~~  119 (131)
                        .....   ..   ...+..++|+|+++ ++ +...++.|.+||++  +  .+.+..+..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~  276 (343)
T 1ri6_A          215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE  276 (343)
T ss_dssp             EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS
T ss_pred             EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC
Confidence              22222   11   23466899999986 54 55578999999998  2  3444444433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.48  E-value=1e-12  Score=94.18  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=95.7

Q ss_pred             ccc-CCCCEEEEEeCCCeEEEEcCCCCceeecccccc-cEEEEEEcCCCCEEEEEeCCCcEE-EEECCCcceeeeeecCC
Q psy3840           3 SSR-NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKG-PIFALKWNKRGNYILSAGVDKTTI-IWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~s~~~d~~i~-~~d~~~~~~~~~~~~~~   79 (131)
                      +|+ |+|+.+++++ ++.+.+|+..+.....+..|.+ .+..++|+ +++.++.++.+..+. +||+..++... +..+.
T Consensus       302 ~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~  378 (1045)
T 1k32_A          302 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENL  378 (1045)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCC
T ss_pred             eecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCc
Confidence            478 9999999987 7899999988665566677777 89999999 999999988888888 89988776543 33666


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      ..+..++|+|+++ +++++.++.+++||+.+++.......|...
T Consensus       379 ~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~  422 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM  422 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred             cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence            7899999999987 888899999999999998877766555443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.47  E-value=1.7e-13  Score=94.62  Aligned_cols=93  Identities=14%  Similarity=0.089  Sum_probs=68.8

Q ss_pred             cccCCCCEEEEEeC---------CCeEEEEcCCCCce---eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840           3 SSRNNGSFLATGSY---------DGYARIWTSDGSLK---STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---------d~~i~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      +|||||++|+.++.         ++.|++||+.+...   ..+   ...+..++|+|+|+.++.+. ++.|++||+.+++
T Consensus        66 ~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~  141 (719)
T 1z68_A           66 GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP  141 (719)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred             EECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence            48999999999876         68999999985444   333   24678899999999999885 7799999998877


Q ss_pred             eeeeee-cCCCCe-----------------EEEEEcCCCc-EEEEeCC
Q psy3840          71 CEQQFS-FHSAPA-----------------LDVDWQSNTS-FASCSTD   99 (131)
Q Consensus        71 ~~~~~~-~~~~~v-----------------~~~~~~~~~~-~~~~~~d   99 (131)
                      ...... ++...+                 ..++|+||++ |+.++.|
T Consensus       142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            643321 221112                 4799999987 7766544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.47  E-value=2.6e-12  Score=80.91  Aligned_cols=110  Identities=6%  Similarity=0.110  Sum_probs=82.8

Q ss_pred             CEEEEEeCCCeEEEEcCC-CCceeecccccc--cEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCC-----
Q psy3840           9 SFLATGSYDGYARIWTSD-GSLKSTLGQHKG--PIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHS-----   79 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~--~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~-----   79 (131)
                      +++++++.++.|.+||.. ++.+..+.....  .+..++|+|+++.++ ++..++.+.+||+.+++.+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            578899999999999987 455544442221  478899999997654 55567899999999988876665321     


Q ss_pred             CCeEEEEEcCCCc-EEEEe------------CCCcEEEEeCCCCeeeEEEec
Q psy3840          80 APALDVDWQSNTS-FASCS------------TDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~------------~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ..+..++|+|+++ ++++.            .++.|.+||+.+++.+..+..
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  133 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence            2567899999986 66654            578999999999888777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.47  E-value=8.2e-13  Score=90.41  Aligned_cols=112  Identities=9%  Similarity=0.071  Sum_probs=84.4

Q ss_pred             cccCCCCEEEEEeCC----------CeEEEEcCCC------Cceeecc-cccccEEEEEEcCCCCEEEEEeCC-------
Q psy3840           3 SSRNNGSFLATGSYD----------GYARIWTSDG------SLKSTLG-QHKGPIFALKWNKRGNYILSAGVD-------   58 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d----------~~i~~~~~~~------~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~d-------   58 (131)
                      +|+|||+.|+.++.+          ..|.+||+.+      .....+. .+...+..++|+|+|+.++..+.+       
T Consensus       136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~  215 (662)
T 3azo_A          136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE  215 (662)
T ss_dssp             EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred             EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence            589999999998876          5799999887      6666666 666778889999999999877754       


Q ss_pred             -CcEEEEECC-Cc---ceeeeeecCCCCeEEEEEcCCCc-EEEEeCCC--cEEEEeCCCCeeeE
Q psy3840          59 -KTTIIWDAA-SG---QCEQQFSFHSAPALDVDWQSNTS-FASCSTDQ--HIHVCKLHSDKPVK  114 (131)
Q Consensus        59 -~~i~~~d~~-~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~--~i~i~d~~~~~~~~  114 (131)
                       ..|++||+. ++   +.......+...+..+.|+|+++ ++++..++  .|++||+.+++...
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~  279 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ  279 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred             CcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee
Confidence             379999998 56   33333334457889999999988 56666677  67777776665443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.47  E-value=3e-12  Score=81.89  Aligned_cols=111  Identities=9%  Similarity=0.062  Sum_probs=77.9

Q ss_pred             cccCCCCEEEEEe-CCCeEEEEcCCCCce---eec---ccccccEEEEEEcCCCCEEEEEeC--CCcEEEEECC--Ccc-
Q psy3840           3 SSRNNGSFLATGS-YDGYARIWTSDGSLK---STL---GQHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAA--SGQ-   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~-~d~~i~~~~~~~~~~---~~~---~~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~--~~~-   70 (131)
                      +|+|+++++++++ .++.|.+|++....+   ..+   ..+......++|+|++++++++..  ++.+.+|++.  +++ 
T Consensus       217 ~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~  296 (361)
T 3scy_A          217 IFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL  296 (361)
T ss_dssp             EECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE
T ss_pred             EEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE
Confidence            4899999888877 588999999863222   111   223344679999999998876665  4899999986  344 


Q ss_pred             -eeeeeecCCCCeEEEEEcCCCc-EEEEe-CCCcEEEE--eCCCCeeeE
Q psy3840          71 -CEQQFSFHSAPALDVDWQSNTS-FASCS-TDQHIHVC--KLHSDKPVK  114 (131)
Q Consensus        71 -~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~--d~~~~~~~~  114 (131)
                       .+..+.. ...+..++|+|+++ +++++ .++.+.+|  |.++++...
T Consensus       297 ~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          297 TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence             3344444 45678899999987 66665 56889996  555665543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.45  E-value=6.4e-12  Score=79.52  Aligned_cols=78  Identities=12%  Similarity=0.014  Sum_probs=64.4

Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          39 PIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        39 ~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      .+..++++| +++.++++  ++.+.+||+.+++.+..+... ..+..++|+|+++ +++++.++.|.+||+++++.+..+
T Consensus       256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence            345677889 99998888  889999999999887776643 4567899999976 777788899999999999998888


Q ss_pred             ecc
Q psy3840         117 EGH  119 (131)
Q Consensus       117 ~~~  119 (131)
                      ..+
T Consensus       333 ~~~  335 (349)
T 1jmx_B          333 KLP  335 (349)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            655

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.43  E-value=2.9e-12  Score=81.49  Aligned_cols=108  Identities=13%  Similarity=0.126  Sum_probs=76.4

Q ss_pred             cccCCCCEEEEEeC---CCeEEEEcCCCC---ceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-cc--ee
Q psy3840           3 SSRNNGSFLATGSY---DGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAAS-GQ--CE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~-~~--~~   72 (131)
                      +|+|+++ +++++.   ++.|.+|++...   .+..+..+...+..++|+|+++++++++ .++.+.+|++.. +.  .+
T Consensus        46 a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~  124 (347)
T 3hfq_A           46 ALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLT  124 (347)
T ss_dssp             EECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             EEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence            4789999 555544   588999998633   2333344667788999999999888887 678999999963 32  22


Q ss_pred             eeeecC---------CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC-CCe
Q psy3840          73 QQFSFH---------SAPALDVDWQSNTS-FASCSTDQHIHVCKLH-SDK  111 (131)
Q Consensus        73 ~~~~~~---------~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~-~~~  111 (131)
                      ..+...         ...+..++|+|+++ +++...++.|.+|++. +++
T Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~  174 (347)
T 3hfq_A          125 DTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ  174 (347)
T ss_dssp             EEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred             ceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence            232211         12478899999988 4555567889999998 443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.43  E-value=1.5e-11  Score=79.05  Aligned_cols=114  Identities=10%  Similarity=-0.019  Sum_probs=81.2

Q ss_pred             cccCCCCEEEEEeC-CCe--EEEEcCCCC-ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           3 SSRNNGSFLATGSY-DGY--ARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~--i~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      +|+|||+.|+.++. ++.  |.+||+.+. .......+...+..+.|+|+++.++.++.++.+++||+.+++.......+
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~  121 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP  121 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech
Confidence            58999999999887 664  778888744 44444455555556789999999999999999999999998876655544


Q ss_pred             CCCeEEEE--EcCCCcEEEE-----------------------eCCCcEEEEeCCCCeeeEEE
Q psy3840          79 SAPALDVD--WQSNTSFASC-----------------------STDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        79 ~~~v~~~~--~~~~~~~~~~-----------------------~~d~~i~i~d~~~~~~~~~~  116 (131)
                      ...+....  ++|+++++.+                       ..+..|++||+.+++.....
T Consensus       122 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~  184 (388)
T 3pe7_A          122 AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL  184 (388)
T ss_dssp             TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred             hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence            44343333  3788774331                       23467999999988654433

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.43  E-value=3.2e-11  Score=77.10  Aligned_cols=106  Identities=11%  Similarity=0.169  Sum_probs=74.4

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC--CC------ce------eecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD--GS------LK------STLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDA   66 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~--~~------~~------~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~   66 (131)
                      +|+|+++++++++. ++.|.+|++.  +.      ..      ............++|+|+++++++++ .++.+.+|++
T Consensus       161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  240 (361)
T 3scy_A          161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY  240 (361)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence            57999997766654 7899999876  21      11      11222344578899999999887776 6899999999


Q ss_pred             CCcce--eeeee---cCCCCeEEEEEcCCCc-EEEEeC--CCcEEEEeCC
Q psy3840          67 ASGQC--EQQFS---FHSAPALDVDWQSNTS-FASCST--DQHIHVCKLH  108 (131)
Q Consensus        67 ~~~~~--~~~~~---~~~~~v~~~~~~~~~~-~~~~~~--d~~i~i~d~~  108 (131)
                      .+++.  +..+.   .+......++|+|+++ ++++..  ++.|.+|++.
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            87643  22222   2234567999999988 545544  4789999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.43  E-value=1.3e-11  Score=78.47  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             cccCCCCEEEEE-eCCCeEEEEcCC---CCc--eeeccccc------ccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCc
Q psy3840           3 SSRNNGSFLATG-SYDGYARIWTSD---GSL--KSTLGQHK------GPIFALKWNKRGNYI-LSAGVDKTTIIWDAASG   69 (131)
Q Consensus         3 ~~~~~~~~l~~~-~~d~~i~~~~~~---~~~--~~~~~~~~------~~i~~~~~~~~~~~~-~s~~~d~~i~~~d~~~~   69 (131)
                      +|+|+|++++++ ..++.|.+|++.   ++.  +..+....      ..+..++|+|+++++ ++...++.+.+|++...
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            589999977664 458899999875   221  11222211      347889999999977 45566899999999732


Q ss_pred             ---ceeeeeecCCCCeEEEEEcCCCc-EEEEeC-CCcEEEE--eCCCCeee
Q psy3840          70 ---QCEQQFSFHSAPALDVDWQSNTS-FASCST-DQHIHVC--KLHSDKPV  113 (131)
Q Consensus        70 ---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~-d~~i~i~--d~~~~~~~  113 (131)
                         +.+..+..+...+..++|+|+++ +++++. ++.+.+|  |.++++..
T Consensus       273 g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          273 GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence               34445555555678999999987 666655 5889999  55566544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.42  E-value=2e-11  Score=75.70  Aligned_cols=108  Identities=12%  Similarity=0.214  Sum_probs=82.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccc--cccEEEEEEcCCCCEEEEEeCCC-cEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQH--KGPIFALKWNKRGNYILSAGVDK-TTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~s~~~d~-~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +++++++++++...++.|++|+..++.+..+...  ...+..++++++++++++...++ .|.+||. +++.+..+..+.
T Consensus       170 ~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~  248 (286)
T 1q7f_A          170 VVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV  248 (286)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred             EECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence            3577888777777789999999887766665433  35688999999999888888776 9999995 566666665433


Q ss_pred             --CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840          80 --APALDVDWQSNTSFASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        80 --~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  111 (131)
                        ..+..++++|+++++.++.++.|++|++....
T Consensus       249 ~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          249 KHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA  282 (286)
T ss_dssp             CCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred             CCCcceeEEECCCCcEEEECCCCeEEEEEccccc
Confidence              24778999999985555778999999986543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.41  E-value=1e-12  Score=91.24  Aligned_cols=108  Identities=14%  Similarity=0.064  Sum_probs=82.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeeccccccc-----EEEEEEcCCCCEEEEEeCC---------CcEEEEECC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGP-----IFALKWNKRGNYILSAGVD---------KTTIIWDAA   67 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~-----i~~~~~~~~~~~~~s~~~d---------~~i~~~d~~   67 (131)
                      .|+|++++++++  |++|++||+. ++....+.+|...     ...+.|||+|+.++.++.+         +.+.+||+.
T Consensus        23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~  100 (740)
T 4a5s_A           23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN  100 (740)
T ss_dssp             EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence            478999988886  8999999987 5555555555432     2347899999999988775         566799999


Q ss_pred             CcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeE
Q psy3840          68 SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        68 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                      +++.. .+..+...+...+|+|||+ ++.+ .++.|++||+.+++..+
T Consensus       101 ~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A          101 KRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             TTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             CCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE
Confidence            98754 3555567899999999998 6555 67899999998876543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.38  E-value=2.5e-11  Score=84.00  Aligned_cols=107  Identities=11%  Similarity=0.148  Sum_probs=75.9

Q ss_pred             cccCCCCEEEEEeCCC-----eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCc----------------E
Q psy3840           3 SSRNNGSFLATGSYDG-----YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT----------------T   61 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~----------------i   61 (131)
                      +|||||++|+.+..++     .|++||+.+............+..++|+|+++.++.+..++.                |
T Consensus       131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v  210 (710)
T 2xdw_A          131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (710)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEE
Confidence            5899999998876643     899999984443332222233677899999999998887765                9


Q ss_pred             EEEECCCccee--eeeec--CCCCeEEEEEcCCCc-EEEEeC-----CCcEEEEeCCC
Q psy3840          62 IIWDAASGQCE--QQFSF--HSAPALDVDWQSNTS-FASCST-----DQHIHVCKLHS  109 (131)
Q Consensus        62 ~~~d~~~~~~~--~~~~~--~~~~v~~~~~~~~~~-~~~~~~-----d~~i~i~d~~~  109 (131)
                      ++|++.+++..  ..+..  +...+..+.|+|+++ ++....     +..|++||+.+
T Consensus       211 ~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             EEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence            99999876532  22222  334577899999987 554433     56899999976

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.37  E-value=2.2e-11  Score=84.65  Aligned_cols=94  Identities=11%  Similarity=0.052  Sum_probs=70.9

Q ss_pred             cccCCCCEEEEEeCC---------CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840           3 SSRNNGSFLATGSYD---------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---------~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~   73 (131)
                      +|||||++|+.++.+         +.+.+||+.+.....+..+.+.+...+|||+|+.++.+ .++.|++|++.+++..+
T Consensus        68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A           68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             EECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE
Confidence            469999999998876         55679999866666777788899999999999999887 56789999998876543


Q ss_pred             ee-ecCCC-----------------CeEEEEEcCCCc-EEEEe
Q psy3840          74 QF-SFHSA-----------------PALDVDWQSNTS-FASCS   97 (131)
Q Consensus        74 ~~-~~~~~-----------------~v~~~~~~~~~~-~~~~~   97 (131)
                      .- .++..                 ....+.|+|||+ |+...
T Consensus       147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence            21 12211                 123589999987 66553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.34  E-value=3.6e-10  Score=70.05  Aligned_cols=115  Identities=13%  Similarity=0.202  Sum_probs=85.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecc--cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC--
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLG--QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~--   78 (131)
                      +++++++++++...++.|.+|+..++.+..+.  .+...+..++++|+++.+++...++.|++||. +++.+..+...  
T Consensus       127 ~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~  205 (286)
T 1q7f_A          127 TVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGI  205 (286)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTT
T ss_pred             EEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCc
Confidence            35788887777777889999998776665553  34456889999999998888888999999997 45555555433  


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCC-cEEEEeCCCCeeeEEEecc
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQ-HIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~-~i~i~d~~~~~~~~~~~~~  119 (131)
                      ...+..+++++++. +++...++ .|.+||. +++.+..+..+
T Consensus       206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~  247 (286)
T 1q7f_A          206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK  247 (286)
T ss_dssp             SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence            25688999999988 45555565 9999995 46666666543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.34  E-value=2.2e-10  Score=72.69  Aligned_cols=114  Identities=13%  Similarity=0.127  Sum_probs=86.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC--ceeec---------ccccccEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS--LKSTL---------GQHKGPIFALKWNK-RGNYILSAG-VDKTTIIWDAASG   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~--~~~~~---------~~~~~~i~~~~~~~-~~~~~~s~~-~d~~i~~~d~~~~   69 (131)
                      +++++++++++...++.|+.|+..++  .+..+         ..+......++++| ++..+++.+ .++.|++|+ .++
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            46788998888888899999998865  44444         23344678999999 888888886 689999999 566


Q ss_pred             ceeeeeecCC----------CCeEEEEEcCC-Cc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          70 QCEQQFSFHS----------APALDVDWQSN-TS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        70 ~~~~~~~~~~----------~~v~~~~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +.+..+....          .....++++|+ +. +++...++.|++||..+++.+..+.
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            6666654221          23789999998 77 5666678899999999888877763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.34  E-value=8e-11  Score=76.38  Aligned_cols=102  Identities=13%  Similarity=0.072  Sum_probs=79.7

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      ++..|+++ .++.|++||+. .........|..++..+.+.+.  .++++..||.+.+||+.++....    ....|.++
T Consensus        96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v  168 (388)
T 1xip_A           96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSF  168 (388)
T ss_dssp             ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEE
T ss_pred             CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEE
Confidence            78899998 78999999986 2233344556667888776654  38889999999999999876543    34589999


Q ss_pred             EEcCCCcEEEEeCCCcEEEEeCCCCee--eEEE
Q psy3840          86 DWQSNTSFASCSTDQHIHVCKLHSDKP--VKSF  116 (131)
Q Consensus        86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~  116 (131)
                      +|+|+| ++.+..||.+++|+...++.  ..++
T Consensus       169 ~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          169 DVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             EECSSE-EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             EEcCCc-eEEEEcCCcEEEEcCCCcccccccee
Confidence            999999 77899999999999887764  4455

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.30  E-value=7.5e-11  Score=81.53  Aligned_cols=108  Identities=7%  Similarity=-0.038  Sum_probs=74.2

Q ss_pred             cccCCCCEEEE-----EeCCCeEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeCCCc-------------EE
Q psy3840           3 SSRNNGSFLAT-----GSYDGYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVDKT-------------TI   62 (131)
Q Consensus         3 ~~~~~~~~l~~-----~~~d~~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~d~~-------------i~   62 (131)
                      +|||||++|+.     |+.+..|++||+.+..... ..+...+  ..++|+|+++.++.++.+..             |+
T Consensus       127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~  205 (695)
T 2bkl_A          127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR  205 (695)
T ss_dssp             EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred             EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence            58999999994     4445689999998433320 1121222  67899999999999888766             99


Q ss_pred             EEECCCcce----eeeeecCCCCeEEEEEcCCCc-EEEEeCCC----cEEEEeCCCCe
Q psy3840          63 IWDAASGQC----EQQFSFHSAPALDVDWQSNTS-FASCSTDQ----HIHVCKLHSDK  111 (131)
Q Consensus        63 ~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~----~i~i~d~~~~~  111 (131)
                      +|++.++..    +.....+...+..+.|+|+++ ++..+.++    .|++++..+++
T Consensus       206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~  263 (695)
T 2bkl_A          206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD  263 (695)
T ss_dssp             EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred             EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence            999987752    222223345688999999987 66555444    67777765554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.29  E-value=1.3e-10  Score=79.56  Aligned_cols=105  Identities=9%  Similarity=0.013  Sum_probs=77.6

Q ss_pred             cCCCCE-EEEEeC-CCeEEEEcCC--C-Cceeeccc-----ccccEEEEEEcCCCCEEEEEeCC----------CcEEEE
Q psy3840           5 RNNGSF-LATGSY-DGYARIWTSD--G-SLKSTLGQ-----HKGPIFALKWNKRGNYILSAGVD----------KTTIIW   64 (131)
Q Consensus         5 ~~~~~~-l~~~~~-d~~i~~~~~~--~-~~~~~~~~-----~~~~i~~~~~~~~~~~~~s~~~d----------~~i~~~   64 (131)
                      |||++. |+..+. +..|.++++.  + .....+..     |...+..++|+|+|+.++.++.+          ..|++|
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            489998 776654 5667778876  3 55555555     56778899999999999988766          579999


Q ss_pred             ECCC------cceeeeee-cCCCCeEEEEEcCCCc-EEEEeCC--------CcEEEEeCC-CC
Q psy3840          65 DAAS------GQCEQQFS-FHSAPALDVDWQSNTS-FASCSTD--------QHIHVCKLH-SD  110 (131)
Q Consensus        65 d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~-~~~~~~d--------~~i~i~d~~-~~  110 (131)
                      |+.+      ++. ..+. .+...+..++|+||++ ++..+.+        ..|++||+. ++
T Consensus       167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence            9987      544 3444 4445677889999987 6655543        379999998 56

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.29  E-value=5.9e-11  Score=76.23  Aligned_cols=108  Identities=9%  Similarity=0.085  Sum_probs=75.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--CCceeeccccc--ccEEEEEEcCCCCE--EEEEe-------------CCCcEEE
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--GSLKSTLGQHK--GPIFALKWNKRGNY--ILSAG-------------VDKTTII   63 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~~~~~~~~~~~--~~i~~~~~~~~~~~--~~s~~-------------~d~~i~~   63 (131)
                      +++|++++|++++.+ .|.+|++.  ++..... .+.  +....++|+|+++.  +++++             .++.+.+
T Consensus        46 a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v  123 (365)
T 1jof_A           46 TFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV  123 (365)
T ss_dssp             EECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred             EECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence            478999999998887 99999974  4433222 121  23455889999994  44553             6889999


Q ss_pred             EECC-Ccceeeeee----cCCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCC-CCee
Q psy3840          64 WDAA-SGQCEQQFS----FHSAPALDVDWQSNTS-FASCS-TDQHIHVCKLH-SDKP  112 (131)
Q Consensus        64 ~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~-~~~~  112 (131)
                      |++. +++....+.    .+...+..++|+|+++ +++++ .++.|++||+. +++.
T Consensus       124 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~  180 (365)
T 1jof_A          124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV  180 (365)
T ss_dssp             EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred             EccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence            9997 465443333    1345789999999987 55554 46789999998 6654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.29  E-value=2.6e-10  Score=73.26  Aligned_cols=110  Identities=15%  Similarity=0.262  Sum_probs=77.6

Q ss_pred             cccCCCCE--EEEEe-------------CCCeEEEEcCC--CCceeecc----cccccEEEEEEcCCCCEEEEEeC-CCc
Q psy3840           3 SSRNNGSF--LATGS-------------YDGYARIWTSD--GSLKSTLG----QHKGPIFALKWNKRGNYILSAGV-DKT   60 (131)
Q Consensus         3 ~~~~~~~~--l~~~~-------------~d~~i~~~~~~--~~~~~~~~----~~~~~i~~~~~~~~~~~~~s~~~-d~~   60 (131)
                      +++|++++  ++++.             .++.+.+|++.  ++....+.    .+...+..++|+|+|+++++++. ++.
T Consensus        89 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~  168 (365)
T 1jof_A           89 DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK  168 (365)
T ss_dssp             CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence            47899994  44553             68899999985  44433333    24457899999999998887764 679


Q ss_pred             EEEEECC-Cccee--eeeec--CCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCC--CCee
Q psy3840          61 TIIWDAA-SGQCE--QQFSF--HSAPALDVDWQSNTS-FASCS-TDQHIHVCKLH--SDKP  112 (131)
Q Consensus        61 i~~~d~~-~~~~~--~~~~~--~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~--~~~~  112 (131)
                      |++|++. +++..  ..+..  +...+..++|+|+++ +++++ .++.+.+|++.  +++.
T Consensus       169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence            9999998 66543  22331  245688999999987 55555 46789999765  4543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.28  E-value=1.3e-10  Score=73.67  Aligned_cols=114  Identities=8%  Similarity=0.143  Sum_probs=85.2

Q ss_pred             cccC-CCCEEEEEe-CCCeEEEEcCCCCceeeccc----------ccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCc
Q psy3840           3 SSRN-NGSFLATGS-YDGYARIWTSDGSLKSTLGQ----------HKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASG   69 (131)
Q Consensus         3 ~~~~-~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~~   69 (131)
                      +++| +++++++.+ .++.|++|+..+..+..+..          +-.....++++|+ +.++++...++.|++||..++
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G  228 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK  228 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence            3567 777777776 58899999987777666542          2234789999998 777777778999999999888


Q ss_pred             ceeeeee--cCCCCeEEEEEcCCCc-EEEE-------eCCCcEEEEeCCCCeeeEEEe
Q psy3840          70 QCEQQFS--FHSAPALDVDWQSNTS-FASC-------STDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        70 ~~~~~~~--~~~~~v~~~~~~~~~~-~~~~-------~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +.+..+.  .....+..++++| +. +...       ..+..+++||..+++.+..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          229 EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence            8887774  3445788899999 43 2222       234589999999998888763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.26  E-value=2.5e-09  Score=67.55  Aligned_cols=109  Identities=11%  Similarity=0.016  Sum_probs=78.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeec-ccccccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCcceeeeee-
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQCEQQFS-   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~s~~~d----~~i~~~d~~~~~~~~~~~-   76 (131)
                      +|++++++++++..++.|.+||..+.....+ ..+...+.+++++|+++++++...+    +.+.+||..+++....+. 
T Consensus        51 ~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~  130 (333)
T 2dg1_A           51 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED  130 (333)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc
Confidence            3678899777888889999999874443333 2456789999999999988887666    689999988776542332 


Q ss_pred             -cCCCCeEEEEEcCCCcEEEEeC-------CCcEEEEeCCCCe
Q psy3840          77 -FHSAPALDVDWQSNTSFASCST-------DQHIHVCKLHSDK  111 (131)
Q Consensus        77 -~~~~~v~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~  111 (131)
                       .....+..+.++|++.+..++.       .+.|..+|..+++
T Consensus       131 ~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~  173 (333)
T 2dg1_A          131 LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT  173 (333)
T ss_dssp             SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred             CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE
Confidence             2335688999999988544443       2467777766544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.23  E-value=1e-09  Score=70.65  Aligned_cols=111  Identities=13%  Similarity=0.090  Sum_probs=78.9

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCCCCceeecc-----c----c----cccEEEEEEcCCCCEEEEEeC-----------CCc
Q psy3840           5 RNNGSFLATGSYDGYARIWTSDGSLKSTLG-----Q----H----KGPIFALKWNKRGNYILSAGV-----------DKT   60 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~----~----~~~i~~~~~~~~~~~~~s~~~-----------d~~   60 (131)
                      ++++..++..+.++.|.++|+.........     .    .    ......++++|++..++.+..           .+.
T Consensus       208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~  287 (361)
T 2oiz_A          208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE  287 (361)
T ss_dssp             EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred             cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence            355666666677888899987632211110     0    0    111123688999887776543           347


Q ss_pred             EEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC--eeeEEEec
Q psy3840          61 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD--KPVKSFEG  118 (131)
Q Consensus        61 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~--~~~~~~~~  118 (131)
                      +.+||+.+++.+..+..+.  +..++|+|+++ +++++. +.|.+||..++  +.+.++..
T Consensus       288 v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~  345 (361)
T 2oiz_A          288 IWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG  345 (361)
T ss_dssp             EEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred             EEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence            9999999999999988765  89999999987 666655 99999999999  99888743

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.20  E-value=4.6e-10  Score=72.23  Aligned_cols=108  Identities=9%  Similarity=0.097  Sum_probs=82.5

Q ss_pred             CCCCEEEEEe------CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCC
Q psy3840           6 NNGSFLATGS------YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAAS   68 (131)
Q Consensus         6 ~~~~~l~~~~------~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~~   68 (131)
                      ++++++++..      .|+.|.+||.. ++.+..+..+..+  .++++|+++++++++          .++.|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            4667777754      36799999976 6666666665555  899999999988876          256799999998


Q ss_pred             cceeeeeecC------CCCeEEEEEcCCCc-EEEEeC--CCcEEEEeCCCCeeeEE
Q psy3840          69 GQCEQQFSFH------SAPALDVDWQSNTS-FASCST--DQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        69 ~~~~~~~~~~------~~~v~~~~~~~~~~-~~~~~~--d~~i~i~d~~~~~~~~~  115 (131)
                      .+.+..+...      ......++++|+++ ++++..  ++.|.+||+++++.+..
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            8887776532      23567899999987 555543  57899999999988776

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.19  E-value=1.7e-09  Score=68.59  Aligned_cols=92  Identities=16%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             cccCCCCEEEEEeCC---Ce--EEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC-------------------
Q psy3840           3 SSRNNGSFLATGSYD---GY--ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD-------------------   58 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---~~--i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d-------------------   58 (131)
                      .|+|||+.|+..+.+   +.  |.+|++.+.....+..+.. +..+.|+|+++.++.++.+                   
T Consensus        65 ~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g  143 (347)
T 2gop_A           65 RISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD  143 (347)
T ss_dssp             EECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred             EECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence            589999999887754   33  7777877554444444445 8999999999988877632                   


Q ss_pred             --------CcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEe
Q psy3840          59 --------KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCS   97 (131)
Q Consensus        59 --------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   97 (131)
                              ..+++||+.+++.+..+.. . .+..+.|+|++.++++.
T Consensus       144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~  188 (347)
T 2gop_A          144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVP  188 (347)
T ss_dssp             ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEE
T ss_pred             cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEe
Confidence                    5688999988876445544 3 77889999999333443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.18  E-value=1.4e-09  Score=67.66  Aligned_cols=107  Identities=10%  Similarity=0.031  Sum_probs=84.9

Q ss_pred             CCCEEEEEeCCCeEEEEcC-CCCceeeccccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-CCeE
Q psy3840           7 NGSFLATGSYDGYARIWTS-DGSLKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APAL   83 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~-~~~~~~~~~~~~-~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~   83 (131)
                      .+++|++++.++.|.+||. .|+.+.++..+. ..+.++.++|+|+.++  +.++.++.||. +++.+..+.... ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            4688999999999999998 588888887765 4678899999999888  45778999998 899888887643 4678


Q ss_pred             EEEEcCCCc-EEEEeC-CCcEEEEeCCCCeeeEEEe
Q psy3840          84 DVDWQSNTS-FASCST-DQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        84 ~~~~~~~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~  117 (131)
                      +..+.+++. +++.+. ++.+..+|. +++.+.++.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~  115 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTE  115 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEe
Confidence            888999988 555555 667877775 677766654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.17  E-value=1.9e-09  Score=67.05  Aligned_cols=113  Identities=14%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             ccCCCCEEEEEeC-CCeEEEEcCCCCceeecc------cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           4 SRNNGSFLATGSY-DGYARIWTSDGSLKSTLG------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         4 ~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      +.++|+.+++.+. ++.|..++..++.+..+.      .+......++..++++++++...++.+..||.. ++.+..+.
T Consensus        84 ~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~  162 (276)
T 3no2_A           84 ILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK  162 (276)
T ss_dssp             ECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred             ECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE
Confidence            5688999999887 778888888787766543      122344556788999999999999999999987 99888887


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .. ..+......+++. ++++..++.|..+|..+++.+.++..
T Consensus       163 ~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          163 LS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             CS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             CC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence            64 3455677788877 66666777899999999999888864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.17  E-value=4.6e-09  Score=71.36  Aligned_cols=110  Identities=13%  Similarity=0.081  Sum_probs=84.3

Q ss_pred             CCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC--CcceeeeeecCCCCe
Q psy3840           6 NNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA--SGQCEQQFSFHSAPA   82 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~--~~~~~~~~~~~~~~v   82 (131)
                      +.+..+++...++.|.++|.. ++.+.++.. ......+.++|+++++++++.++.+.+||+.  +++.+..+... ...
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEA  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCC
Confidence            334456666678999999987 555555543 3356789999999999999999999999996  77777777653 346


Q ss_pred             EEEEEc----CCCc-E-EEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          83 LDVDWQ----SNTS-F-ASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        83 ~~~~~~----~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..++++    |+++ + ++...++.+.++|..+.+.+..+.
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~  283 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  283 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence            789999    6887 4 455567899999999998887765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.16  E-value=3.2e-10  Score=72.90  Aligned_cols=114  Identities=11%  Similarity=-0.010  Sum_probs=75.3

Q ss_pred             cccCCCCEEEEEeCC---CeEEEEcCCCCceeecccccccE-EEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC
Q psy3840           3 SSRNNGSFLATGSYD---GYARIWTSDGSLKSTLGQHKGPI-FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      +|+|+|++|+.....   ..|.+|++.+.....+..+.... ..+.|+|+++.++..+.++.+++||+.+++.......+
T Consensus        42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~  121 (396)
T 3c5m_A           42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD  121 (396)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence            489999998877543   36888898755544444433332 23789999999999999989999999888765444433


Q ss_pred             CCCeEE-------------------EEEcCCCc-EEEE-----eCCCcEEEEeCCCCeeeEEE
Q psy3840          79 SAPALD-------------------VDWQSNTS-FASC-----STDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        79 ~~~v~~-------------------~~~~~~~~-~~~~-----~~d~~i~i~d~~~~~~~~~~  116 (131)
                      ......                   ..++|++. ++..     ..+..|++||+.+++.....
T Consensus       122 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~  184 (396)
T 3c5m_A          122 EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH  184 (396)
T ss_dssp             TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred             cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence            221111                   24566655 3322     35568999999887654443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.15  E-value=1.3e-09  Score=75.86  Aligned_cols=107  Identities=12%  Similarity=0.132  Sum_probs=72.5

Q ss_pred             cccCCCCEEEEEeCC-----CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCc--------------EEE
Q psy3840           3 SSRNNGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT--------------TII   63 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~--------------i~~   63 (131)
                      +|||||++|+.+..+     ..|++||+.+........+...+..++|+|+ +.++.+..++.              |++
T Consensus       169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~  247 (741)
T 1yr2_A          169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL  247 (741)
T ss_dssp             EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence            589999999887654     3599999984443322222222357899999 98888776544              889


Q ss_pred             EECCCcce--eeeeec--CCCCeEEEEEcCCCc-EEEEeC-----CCcEEEEeCCCC
Q psy3840          64 WDAASGQC--EQQFSF--HSAPALDVDWQSNTS-FASCST-----DQHIHVCKLHSD  110 (131)
Q Consensus        64 ~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~-~~~~~~-----d~~i~i~d~~~~  110 (131)
                      |++.++..  ...+..  +...+..+.|+|+++ ++....     ...|++||+.++
T Consensus       248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          248 HRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            99877652  122222  223478899999987 555443     347999999876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.12  E-value=1.3e-08  Score=63.43  Aligned_cols=115  Identities=13%  Similarity=0.110  Sum_probs=79.6

Q ss_pred             ccCCCCEEEEE----e-------------CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3840           4 SRNNGSFLATG----S-------------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA   66 (131)
Q Consensus         4 ~~~~~~~l~~~----~-------------~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~   66 (131)
                      ++|+|+++++.    .             ..+.|..++..++ ...+..+......++|+|+++.+++...++.+.+|++
T Consensus       122 ~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~  200 (296)
T 3e5z_A          122 LAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCL  200 (296)
T ss_dssp             ECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEE
Confidence            57888888763    2             1345666665533 3344455566789999999998877777899999998


Q ss_pred             C-Ccce---eeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          67 A-SGQC---EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        67 ~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      . +++.   ...+......+..+++++++.+..+. ++.|.+||.. ++.+..+..+..
T Consensus       201 ~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~  257 (296)
T 3e5z_A          201 NARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT  257 (296)
T ss_dssp             CSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC
T ss_pred             CCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC
Confidence            7 4443   22332234456789999999865555 7889999986 777777765554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.10  E-value=6.7e-09  Score=65.86  Aligned_cols=104  Identities=11%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             CCCEEEEEe---------CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC---C--cEEEEECCCccee
Q psy3840           7 NGSFLATGS---------YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---K--TTIIWDAASGQCE   72 (131)
Q Consensus         7 ~~~~l~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d---~--~i~~~d~~~~~~~   72 (131)
                      +|+.++...         .++.|.+|++.+.....+    ..+..++|+|+|+.++..+.+   +  .+.+|++.+++..
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~   98 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK   98 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE
Confidence            677776642         255788999875444444    567889999999988877653   3  3778888887765


Q ss_pred             eeeecCCCCeEEEEEcCCCc-EEEEeC---------------------------CCcEEEEeCCCCeeeEEE
Q psy3840          73 QQFSFHSAPALDVDWQSNTS-FASCST---------------------------DQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~~~~~-~~~~~~---------------------------d~~i~i~d~~~~~~~~~~  116 (131)
                      ...... . +..+.|+|+++ ++..+.                           ...|++||+.+++.+..+
T Consensus        99 ~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l  168 (347)
T 2gop_A           99 KILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF  168 (347)
T ss_dssp             EEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE
T ss_pred             EEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee
Confidence            444433 3 89999999987 665542                           246899999988763443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.10  E-value=7.3e-09  Score=64.56  Aligned_cols=92  Identities=15%  Similarity=0.042  Sum_probs=70.4

Q ss_pred             cccCCCC-EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec----
Q psy3840           3 SSRNNGS-FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----   77 (131)
Q Consensus         3 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~----   77 (131)
                      .|+|+++ +++++..++.|..|+..+. ...+..+...+..++++|+++++++...++.|.+||..+++.......    
T Consensus        34 ~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~  112 (296)
T 3e5z_A           34 VYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGK  112 (296)
T ss_dssp             EEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTE
T ss_pred             eEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCC
Confidence            4788888 7778888999999998866 666666777889999999999888877788999999987765433221    


Q ss_pred             CCCCeEEEEEcCCCcEEE
Q psy3840          78 HSAPALDVDWQSNTSFAS   95 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~   95 (131)
                      ....+..++++|++++..
T Consensus       113 ~~~~~~~i~~d~~G~l~v  130 (296)
T 3e5z_A          113 KLNSPNDVCLAPDGSLWF  130 (296)
T ss_dssp             ECCCCCCEEECTTSCEEE
T ss_pred             CCCCCCCEEECCCCCEEE
Confidence            123467799999988543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.09  E-value=2.1e-08  Score=68.21  Aligned_cols=114  Identities=11%  Similarity=0.099  Sum_probs=83.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcC---CCCceeecccccccEEEEEEc----CCCCEEEEEeC-CCcEEEEECCCcceeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTS---DGSLKSTLGQHKGPIFALKWN----KRGNYILSAGV-DKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~---~~~~~~~~~~~~~~i~~~~~~----~~~~~~~s~~~-d~~i~~~d~~~~~~~~~   74 (131)
                      .++||++++++++.++.|.+||+   .++.+.++.... ....++|+    |+|+++++++. ++++.++|..+.+.+..
T Consensus       203 ~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~  281 (567)
T 1qks_A          203 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  281 (567)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence            47999999999999999999998   355555555433 35789999    69998887765 68999999888766654


Q ss_pred             eecCC-------------------------------------------------------CCeEEEEEcCCCc-E-EEEe
Q psy3840          75 FSFHS-------------------------------------------------------APALDVDWQSNTS-F-ASCS   97 (131)
Q Consensus        75 ~~~~~-------------------------------------------------------~~v~~~~~~~~~~-~-~~~~   97 (131)
                      +....                                                       .....+.|+|+++ + ++..
T Consensus       282 i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          282 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             EeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC
Confidence            43110                                                       0123457888877 4 4455


Q ss_pred             CCCcEEEEeCCCCeeeEEEe
Q psy3840          98 TDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        98 ~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .++.|.++|+++++.+..+.
T Consensus       362 ~sn~V~ViD~~t~kl~~~i~  381 (567)
T 1qks_A          362 ARNKLVVIDTKEGKLVAIED  381 (567)
T ss_dssp             GGTEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEe
Confidence            67889999999988766554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.07  E-value=6.1e-09  Score=67.66  Aligned_cols=105  Identities=10%  Similarity=0.063  Sum_probs=79.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC--C---------CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD--G---------SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC   71 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~--~---------~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~   71 (131)
                      ++++...++++|+.++ +.+|+++  .         -.......+.. |..++|  ++.+++++ .++.+++||+++...
T Consensus        44 ais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~  118 (388)
T 1xip_A           44 DISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSE  118 (388)
T ss_dssp             EEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTC
T ss_pred             EEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhc
Confidence            5678889999998874 6669754  1         01112234556 999999  89999998 889999999987666


Q ss_pred             eeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeee
Q psy3840          72 EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      ......+..++.++.+.+.. ++++..||.+.+||+++++..
T Consensus       119 ~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~  159 (388)
T 1xip_A          119 FRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTK  159 (388)
T ss_dssp             EEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEE
T ss_pred             cCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCccc
Confidence            55666667778888876653 888999999999999977654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.07  E-value=9.1e-09  Score=63.08  Aligned_cols=108  Identities=9%  Similarity=0.045  Sum_probs=78.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeec-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      ++++++++++...++.|..|+..+...... ......+..+++++++..+++...++.|..|+................+
T Consensus       157 ~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p  236 (270)
T 1rwi_B          157 VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP  236 (270)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCE
T ss_pred             EeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCc
Confidence            567888777666678999999875443322 2233567899999999888888788999999987654332222223568


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      ..+++++++. +++...++.|+++++...+
T Consensus       237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          237 LAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             eeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            8999999988 5677778999999987544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.07  E-value=6.9e-09  Score=67.30  Aligned_cols=113  Identities=7%  Similarity=0.021  Sum_probs=86.5

Q ss_pred             ccCCCCEEEEEeC-----CCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q psy3840           4 SRNNGSFLATGSY-----DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAA   67 (131)
Q Consensus         4 ~~~~~~~l~~~~~-----d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~   67 (131)
                      ..|+++.+++...     ++.|.++|.. ++.+.++.....+ . ++++|+++.++.++          .++.+.+||..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            4689999988876     5789999987 5666666544445 4 99999999887765          36789999999


Q ss_pred             CcceeeeeecCC-------CCeEEEEEcCCCc-EEEEe--CCCcEEEEeCCCCeeeEEEec
Q psy3840          68 SGQCEQQFSFHS-------APALDVDWQSNTS-FASCS--TDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        68 ~~~~~~~~~~~~-------~~v~~~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      +.+.+..+....       .....+.++|+++ ++.+.  .++.|.++|+.+++.+.++..
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v  178 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  178 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence            999888775321       2466799999987 55444  368899999999998888753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.04  E-value=1.9e-09  Score=68.08  Aligned_cols=109  Identities=8%  Similarity=0.067  Sum_probs=80.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      .|++++..++..+.++.++.|  .++....+..+...+.+++|+|++++++++..++.|.+||..+++...........+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~   89 (333)
T 2dg1_A           12 FYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANP   89 (333)
T ss_dssp             CSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSE
T ss_pred             eecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCc
Confidence            356666666666667778888  345555566666677999999999988888889999999998877554443445679


Q ss_pred             EEEEEcCCCcE-EEEeCC----CcEEEEeCCCCeee
Q psy3840          83 LDVDWQSNTSF-ASCSTD----QHIHVCKLHSDKPV  113 (131)
Q Consensus        83 ~~~~~~~~~~~-~~~~~d----~~i~i~d~~~~~~~  113 (131)
                      ..++++|++++ ++...+    +.|.+||.+++...
T Consensus        90 ~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~  125 (333)
T 2dg1_A           90 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  125 (333)
T ss_dssp             EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             ceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence            99999999885 444444    58999998876543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.02  E-value=4e-08  Score=60.22  Aligned_cols=108  Identities=8%  Similarity=-0.007  Sum_probs=75.6

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      ++++++++++.. ++.|..||..+.....+.. ....+..++++++++.+++...++.+..|+..+.............+
T Consensus        74 ~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p  152 (270)
T 1rwi_B           74 VDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP  152 (270)
T ss_dssp             ECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSC
T ss_pred             ECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCc
Confidence            567778555554 8899999988655544432 22567899999999988887778899999765544332222222456


Q ss_pred             EEEEEcCCCcE-EEEeCCCcEEEEeCCCCee
Q psy3840          83 LDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        83 ~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~  112 (131)
                      ..+++++++++ ++...++.|.+||......
T Consensus       153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             eeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            78999998884 5555678999999876544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.00  E-value=5.2e-08  Score=61.86  Aligned_cols=116  Identities=4%  Similarity=-0.066  Sum_probs=81.1

Q ss_pred             ccCCCCEEEEEeCC----------CeEEEEcCC-CCceeecccc-cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce
Q psy3840           4 SRNNGSFLATGSYD----------GYARIWTSD-GSLKSTLGQH-KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC   71 (131)
Q Consensus         4 ~~~~~~~l~~~~~d----------~~i~~~~~~-~~~~~~~~~~-~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~   71 (131)
                      ++++|++++++..+          +.|.++|.. ++....+... ......++++|+++.++.+..  .+.+||..+++.
T Consensus       179 ~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          179 MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             EcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence            57788877666544          789999987 4444343321 235789999999998888765  899999988775


Q ss_pred             eee--eecCCCCeEEEEEcC-CCcE-EEE----eCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          72 EQQ--FSFHSAPALDVDWQS-NTSF-ASC----STDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        72 ~~~--~~~~~~~v~~~~~~~-~~~~-~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      ...  +.........++++| ++.+ ++.    ..++.|.+||.. ++.+.++..-..+
T Consensus       257 ~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P  314 (328)
T 3dsm_A          257 PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP  314 (328)
T ss_dssp             CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE
T ss_pred             eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc
Confidence            321  111135678999999 4664 554    467899999998 8888887643333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.99  E-value=1.4e-08  Score=65.18  Aligned_cols=95  Identities=9%  Similarity=0.069  Sum_probs=71.9

Q ss_pred             CCceeecccccccEEE-----EEEcCCCCEEEEEeC-CC--cEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEe
Q psy3840          27 GSLKSTLGQHKGPIFA-----LKWNKRGNYILSAGV-DK--TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCS   97 (131)
Q Consensus        27 ~~~~~~~~~~~~~i~~-----~~~~~~~~~~~s~~~-d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~   97 (131)
                      +..+..+..+......     .+|+|+|+.++..+. ++  .+.+||+.+++.......+...+....|+|+++ |+.+.
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence            6667777777665555     789999999888877 66  388889988877665555544555678999987 88888


Q ss_pred             CCCcEEEEeCCCCeeeEEEecccc
Q psy3840          98 TDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        98 ~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      .++.+++||+.+++.......+..
T Consensus       100 ~~~~l~~~d~~~g~~~~~~~~~~~  123 (388)
T 3pe7_A          100 DGRNLMRVDLATLEENVVYQVPAE  123 (388)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCTT
T ss_pred             CCCeEEEEECCCCcceeeeechhh
Confidence            888999999999887665554443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.92  E-value=5.4e-08  Score=63.71  Aligned_cols=108  Identities=16%  Similarity=0.104  Sum_probs=77.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCcceeeee----e
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK--TTIIWDAASGQCEQQF----S   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~--~i~~~d~~~~~~~~~~----~   76 (131)
                      +++++++++++...++.|+.||..+..+..+........ ++|+|++..+++++.++  .+..++...+.....+    .
T Consensus       137 a~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~  215 (409)
T 3hrp_A          137 AAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS  215 (409)
T ss_dssp             EECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT
T ss_pred             EEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc
Confidence            367888877777667899999988555444433233334 89999999988888765  7888888765543333    2


Q ss_pred             cCCCCeEEEEEcC-CCcEEEEeCCCcEEEEeCCCCe
Q psy3840          77 FHSAPALDVDWQS-NTSFASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        77 ~~~~~v~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~  111 (131)
                      .....+..++++| ++.++.+..++.|+.||..++.
T Consensus       216 ~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~  251 (409)
T 3hrp_A          216 TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE  251 (409)
T ss_dssp             TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred             hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence            1345678899999 5776667778899999998765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.92  E-value=1.5e-07  Score=61.00  Aligned_cols=110  Identities=7%  Similarity=-0.020  Sum_probs=79.6

Q ss_pred             cCCCCEEEEEeC--CC---eEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCC
Q psy3840           5 RNNGSFLATGSY--DG---YARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAAS   68 (131)
Q Consensus         5 ~~~~~~l~~~~~--d~---~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~~   68 (131)
                      .|+++++++...  ..   .|.++|.. ++.+.++.....+  .++++|+++.++.+.          .++.+.++|..+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            467788877653  22   78999986 5655555543344  899999999988876          367899999998


Q ss_pred             cceeeeeecC-------CCCeEEEEEcCCCc-EEEEeC--CCcEEEEeCCCCeeeEE-Ee
Q psy3840          69 GQCEQQFSFH-------SAPALDVDWQSNTS-FASCST--DQHIHVCKLHSDKPVKS-FE  117 (131)
Q Consensus        69 ~~~~~~~~~~-------~~~v~~~~~~~~~~-~~~~~~--d~~i~i~d~~~~~~~~~-~~  117 (131)
                      .+.+..+...       ......+.++|+++ ++.+..  ++.|.++| .+++.+.. +.
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~  165 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS  165 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence            8877766432       12345789999987 555543  57899999 99888777 53

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.91  E-value=5e-08  Score=62.68  Aligned_cols=107  Identities=12%  Similarity=0.051  Sum_probs=68.1

Q ss_pred             cccCCCCEEEEEeCC-----CeEEEEcCCCCceeecccccccEEEEEEcC-CCCEEEEEe----------------CCCc
Q psy3840           3 SSRNNGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKGPIFALKWNK-RGNYILSAG----------------VDKT   60 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~s~~----------------~d~~   60 (131)
                      .|+|+++.|+.++.+     +.|.+||+.......+....+ .. +.|+| +++.++.++                .+..
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~  321 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF  321 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence            589999988777554     449999987443333322222 23 88999 999888754                3468


Q ss_pred             EEEEECCCcceeeeeecCCC-----------CeEEEEEcCCCc-EEEEe-CCCc--EEEEeCCCCee
Q psy3840          61 TIIWDAASGQCEQQFSFHSA-----------PALDVDWQSNTS-FASCS-TDQH--IHVCKLHSDKP  112 (131)
Q Consensus        61 i~~~d~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~-~~~~~-~d~~--i~i~d~~~~~~  112 (131)
                      +++||+.+++.. .+..+..           .+..+.|+|+++ ++..+ .++.  ++..++.+++.
T Consensus       322 i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          322 LYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             EEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             EEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence            999999877643 3433333           256678999986 55444 3444  55556555543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.90  E-value=1.3e-07  Score=60.07  Aligned_cols=108  Identities=6%  Similarity=-0.141  Sum_probs=76.4

Q ss_pred             CEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-----CCe
Q psy3840           9 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-----APA   82 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-----~~v   82 (131)
                      ...++...++.|.++|.. ++.+.++. .......++++++++.+++...++.+.+||+.+++....+....     ...
T Consensus        55 ~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p  133 (328)
T 3dsm_A           55 IGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST  133 (328)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC
T ss_pred             EEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc
Confidence            344444557899999987 66666664 34567899998888655555478999999999988776665432     134


Q ss_pred             EEEEEcCCCcEEEEe--CCCcEEEEeCCCCeeeEEEec
Q psy3840          83 LDVDWQSNTSFASCS--TDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        83 ~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ..+++ .++++..+.  .++.|.++|+++++.+..+..
T Consensus       134 ~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A          134 EQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI  170 (328)
T ss_dssp             CCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred             ceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence            56666 456654444  478999999999988777653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.87  E-value=2.1e-07  Score=64.65  Aligned_cols=119  Identities=8%  Similarity=-0.069  Sum_probs=80.0

Q ss_pred             cccCCCCEEEEEeC-----CCeEEEEcCCC------C--ceeecccccccEEEEEEcCCCCEEEEEeCC----CcEEEEE
Q psy3840           3 SSRNNGSFLATGSY-----DGYARIWTSDG------S--LKSTLGQHKGPIFALKWNKRGNYILSAGVD----KTTIIWD   65 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-----d~~i~~~~~~~------~--~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d----~~i~~~d   65 (131)
                      .|+|||++|+..+.     +..|.+||+..      .  ....+..+...+.. .|+|++..++..+..    +.|.+||
T Consensus       239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d  317 (710)
T 2xdw_A          239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID  317 (710)
T ss_dssp             EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence            47999999988765     56799999764      2  34555556555554 478888877655543    3589999


Q ss_pred             CCCcc--eeeeeecCCC--CeEEEEEcCCCc-EEEEeCCC--cEEEEeCCCCeeeEEEecccce
Q psy3840          66 AASGQ--CEQQFSFHSA--PALDVDWQSNTS-FASCSTDQ--HIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        66 ~~~~~--~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      +.++.  ....+..+..  .+..+.|++++. +++...++  .|++||+.+++.+..+..+...
T Consensus       318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~  381 (710)
T 2xdw_A          318 FTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS  381 (710)
T ss_dssp             TTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE
T ss_pred             CCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce
Confidence            98764  2334444433  577888887766 66777777  4677888778776766655433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.86  E-value=6.1e-08  Score=67.25  Aligned_cols=114  Identities=11%  Similarity=0.115  Sum_probs=72.0

Q ss_pred             cccCCCCEEEEEe-----CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC-------------cEEEE
Q psy3840           3 SSRNNGSFLATGS-----YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK-------------TTIIW   64 (131)
Q Consensus         3 ~~~~~~~~l~~~~-----~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~-------------~i~~~   64 (131)
                      +|||||++++.+.     ....|+++|+.+...............++|+ |++.++.+..+.             .|++|
T Consensus       135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~  213 (693)
T 3iuj_A          135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH  213 (693)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred             EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence            5899999998543     2346999999843322221111123577899 999988887764             38999


Q ss_pred             ECCCcce--eeeee--c-CCCCeEEEEEcCCCc-E-EEEe---CCCcEEEEeCCCCe-eeEEEe
Q psy3840          65 DAASGQC--EQQFS--F-HSAPALDVDWQSNTS-F-ASCS---TDQHIHVCKLHSDK-PVKSFE  117 (131)
Q Consensus        65 d~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~-~-~~~~---~d~~i~i~d~~~~~-~~~~~~  117 (131)
                      ++.++..  ...+.  . +......+.|+|+++ + ++..   .++.++++|+.++. ....+.
T Consensus       214 ~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~  277 (693)
T 3iuj_A          214 RLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ  277 (693)
T ss_dssp             ETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred             ECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence            9877542  22222  2 233467889999987 4 3332   23589999987663 334443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.84  E-value=3.3e-07  Score=57.22  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=75.1

Q ss_pred             ccCCCCEEEEEeCC---------------CeEEEEcCCCCceeecccccccEEEEEEc----CCCCEEEEE-eCCCcEEE
Q psy3840           4 SRNNGSFLATGSYD---------------GYARIWTSDGSLKSTLGQHKGPIFALKWN----KRGNYILSA-GVDKTTII   63 (131)
Q Consensus         4 ~~~~~~~l~~~~~d---------------~~i~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~s~-~~d~~i~~   63 (131)
                      +++++++.++...+               +.|..++..++. ..+..+......++++    |+++.++.+ ..++.+..
T Consensus       124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~  202 (314)
T 1pjx_A          124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS  202 (314)
T ss_dssp             ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEE
Confidence            46777777666544               467777766433 2333334456788999    998655544 56789999


Q ss_pred             EECC-Ccc-----eeeeeecCC-CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          64 WDAA-SGQ-----CEQQFSFHS-APALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        64 ~d~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ||+. +++     ....+..+. ..+..+++++++.+ ++...++.|.+||.++++.+..+..+
T Consensus       203 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~  266 (314)
T 1pjx_A          203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP  266 (314)
T ss_dssp             EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred             EECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC
Confidence            9976 343     122222222 45788999999884 55556789999999877766666544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.83  E-value=3e-10  Score=73.30  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC-CeE-
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA-PAL-   83 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~-~v~-   83 (131)
                      ++..+++++.|+.|+.||.. |+.+..+..  +.+.+..+..++..+++++.|+.++.||..+++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            67899999999999999976 777777665  4444444556777788888999999999988887655542210 000 


Q ss_pred             EEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          84 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        84 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      +.....++.+++++.++.++.||.++|+.+..+..+
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~  121 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA  121 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC-----------
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC
Confidence            001112345666777778888888888776665443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.83  E-value=1.1e-07  Score=62.52  Aligned_cols=111  Identities=6%  Similarity=-0.019  Sum_probs=83.1

Q ss_pred             CCCCEEEEEeCC-----CeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCc
Q psy3840           6 NNGSFLATGSYD-----GYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAASG   69 (131)
Q Consensus         6 ~~~~~l~~~~~d-----~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~~~   69 (131)
                      ++++.+++....     +.|.++|.. .+.+.++..-..+  .+.++|+++.++.+.          .++.+.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            567777776653     689999987 5666666544445  899999999887775          3678999999999


Q ss_pred             ceeeeeecC-------CCCeEEEEEcCCCc-EEEEeC--CCcEEEEeCCCCeeeEEEec
Q psy3840          70 QCEQQFSFH-------SAPALDVDWQSNTS-FASCST--DQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        70 ~~~~~~~~~-------~~~v~~~~~~~~~~-~~~~~~--d~~i~i~d~~~~~~~~~~~~  118 (131)
                      +.+..+...       ......+.++|+++ ++.+..  ++.|.+.|+.+++.+.++..
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            888777532       13456789999987 555543  57899999999988877754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.81  E-value=5.1e-07  Score=62.63  Aligned_cols=107  Identities=7%  Similarity=-0.041  Sum_probs=72.7

Q ss_pred             cccCCCCEEEEEeCCCe-------------EEEEcCCCC-----ceeecccccccEEEEEEcCCCCEEEEEeCCC----c
Q psy3840           3 SSRNNGSFLATGSYDGY-------------ARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGNYILSAGVDK----T   60 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~-------------i~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~----~   60 (131)
                      +|+|||+.|+.++.+..             |++|++...     .+.....+...+..+.|+|+|++++..+.++    .
T Consensus       174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  253 (695)
T 2bkl_A          174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND  253 (695)
T ss_dssp             EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred             EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence            58999999999988765             999998732     2223334556788999999999888776655    6


Q ss_pred             EEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeC----CCcEEEEeCCCCe
Q psy3840          61 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST----DQHIHVCKLHSDK  111 (131)
Q Consensus        61 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~  111 (131)
                      +++++..+++ ...+..+...+....+ +++.++..+.    ++.|.+||+.+++
T Consensus       254 l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          254 VYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            7777665554 3444444445555556 4444544332    5789999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.80  E-value=3.4e-07  Score=57.18  Aligned_cols=104  Identities=6%  Similarity=0.068  Sum_probs=76.3

Q ss_pred             CCCCEEEEE-eCCCeEEEEcCC--CC-----ceeeccccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           6 NNGSFLATG-SYDGYARIWTSD--GS-----LKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         6 ~~~~~l~~~-~~d~~i~~~~~~--~~-----~~~~~~~~~-~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      ++++.++.+ ..++.|.+|+..  ++     ....+..+. .....++++++++++++...++.|..||..+++.+..+.
T Consensus       185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~  264 (314)
T 1pjx_A          185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR  264 (314)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe
Confidence            778666555 457889999864  32     122233333 557889999999998888888999999998777766666


Q ss_pred             cCCCCeEEEEEcCCCc-EEE-EeCCCcEEEEeCCC
Q psy3840          77 FHSAPALDVDWQSNTS-FAS-CSTDQHIHVCKLHS  109 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~-~~~d~~i~i~d~~~  109 (131)
                      .+...+.+++++|++. +.. ...++.|..|++..
T Consensus       265 ~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          265 CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            6557789999999987 544 44567899999864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.79  E-value=1.2e-06  Score=54.71  Aligned_cols=123  Identities=10%  Similarity=0.084  Sum_probs=77.4

Q ss_pred             ccCCCCEEEEEeC-----------CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEE-EeCCCcEEEEEC--CCc
Q psy3840           4 SRNNGSFLATGSY-----------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDA--ASG   69 (131)
Q Consensus         4 ~~~~~~~l~~~~~-----------d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~i~~~d~--~~~   69 (131)
                      ++|+|++.++...           .+.|..++..++.. .+.........++|+|+++.++. .+.++.|..|++  .++
T Consensus       105 ~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G  183 (297)
T 3g4e_A          105 VDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG  183 (297)
T ss_dssp             ECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC
T ss_pred             ECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC
Confidence            5678886665422           12344444434332 23333345678999999986654 455788999987  444


Q ss_pred             ce-----eeeeecCCCCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEeccc-ceEEEEe
Q psy3840          70 QC-----EQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT-RVYYLAM  127 (131)
Q Consensus        70 ~~-----~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~  127 (131)
                      ..     ...+......+..+++++++.+ ++...++.|..||..+++.+..+..+. .+...++
T Consensus       184 ~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f  248 (297)
T 3g4e_A          184 QISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCF  248 (297)
T ss_dssp             CEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred             cccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEE
Confidence            32     1222223345788999999884 555566789999999999888887663 3444444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.72  E-value=5.8e-06  Score=51.07  Aligned_cols=105  Identities=10%  Similarity=0.105  Sum_probs=73.6

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee--cCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS--FHSA   80 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~--~~~~   80 (131)
                      +++++++.++...++.|..||..+..... .......+..+++++++..+++...++.+..||.. ++. ..+.  ....
T Consensus        22 ~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~   99 (299)
T 2z2n_A           22 VSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDS   99 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTC
T ss_pred             ECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCC
Confidence            46778877766557889999987433221 12234678999999999988887778889999976 332 2222  2345


Q ss_pred             CeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCe
Q psy3840          81 PALDVDWQSNTSF-ASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        81 ~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~  111 (131)
                      .+..+++.+++.+ ++...++.|..||. +++
T Consensus       100 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A          100 APYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             CceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            6889999998884 55556778999998 444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.71  E-value=3e-06  Score=52.38  Aligned_cols=108  Identities=10%  Similarity=0.049  Sum_probs=75.1

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee-eecCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~-~~~~~~~   81 (131)
                      +++++.+.++...++.|..|+..++.... +......+..+++++++.++++...++.+..||. +++.... .......
T Consensus        64 ~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~  142 (299)
T 2z2n_A           64 ISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSY  142 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred             ECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCC
Confidence            45778877776667889999977443221 1223456889999999998888877889999998 5543322 2223456


Q ss_pred             eEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeee
Q psy3840          82 ALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        82 v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~  113 (131)
                      +..+++.+++.+ ++...++.|..||. +++..
T Consensus       143 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A          143 PSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             CceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence            889999999885 44445678999998 55443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.69  E-value=2.2e-08  Score=64.64  Aligned_cols=108  Identities=10%  Similarity=0.020  Sum_probs=63.8

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      ++..+++++.++.+..||.. |+.+..+..+.    ...++|++..+++++.++.++.||.++++.+..+....  ....
T Consensus        91 ~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~  164 (369)
T 2hz6_A           91 SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAAS  164 (369)
T ss_dssp             ----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCB
T ss_pred             cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCc
Confidence            45677888889999999987 77776665543    23456788889999999999999999998776654321  1122


Q ss_pred             EEcCC----CcEEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          86 DWQSN----TSFASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        86 ~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      .+.++    +.++.++.++.++.||.++++.+.+.....
T Consensus       165 ~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  203 (369)
T 2hz6_A          165 LPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYAS  203 (369)
T ss_dssp             CCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSS
T ss_pred             cccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence            23332    557888899999999999999888776433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.68  E-value=4.9e-06  Score=53.91  Aligned_cols=110  Identities=13%  Similarity=0.081  Sum_probs=74.7

Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCce---eeccc----------ccccEEEEEEcCCCCEEEEEeC----------CCcEE
Q psy3840           6 NNGSFLATGSYDGYARIWTSDGSLK---STLGQ----------HKGPIFALKWNKRGNYILSAGV----------DKTTI   62 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~~~~~---~~~~~----------~~~~i~~~~~~~~~~~~~s~~~----------d~~i~   62 (131)
                      +++..++..+..+.+.+.|..+...   ..+..          .......+.++|+++.++....          ++.|.
T Consensus       222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence            3344444334567788888753211   11110          1223445788998887776543          35799


Q ss_pred             EEECCCcceeeeeecCCCCeEEEEEcCCCc--EEEEe-CCCcEEEEeCCCCeeeEEE
Q psy3840          63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCS-TDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        63 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~-~d~~i~i~d~~~~~~~~~~  116 (131)
                      ++|+.+++.+..+.. ......+.|+|+++  ++++. .++.|.++|+.+++.+.++
T Consensus       302 VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          302 SVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            999999999888864 34678999999976  55555 4889999999999988884

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.68  E-value=1.1e-06  Score=57.10  Aligned_cols=119  Identities=11%  Similarity=0.126  Sum_probs=82.2

Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCceeeccc-------------ccccEEEEEEcCCCCEEEEEeC----------CCcEE
Q psy3840           6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQ-------------HKGPIFALKWNKRGNYILSAGV----------DKTTI   62 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~s~~~----------d~~i~   62 (131)
                      ++|++++ .+.+|.|.+.|..+........             ..+....++++++++.++....          .++|.
T Consensus       236 ~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~  314 (386)
T 3sjl_D          236 KAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV  314 (386)
T ss_dssp             TTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence            5665555 4568999999986433211111             1233445778998887776542          25699


Q ss_pred             EEECCCcceeeeeecCCCCeEEEEEcCCCc--EEEE-eCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          63 IWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASC-STDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        63 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      +.|+.+++.+..+... .+++.+.++++++  |++. ..++.|.++|..+++.+.++.....+..++
T Consensus       315 viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~  380 (386)
T 3sjl_D          315 VLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI  380 (386)
T ss_dssp             EEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred             EEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeE
Confidence            9999999999888753 4778999999975  5554 458899999999999999986544433333

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.64  E-value=1.1e-06  Score=54.95  Aligned_cols=95  Identities=13%  Similarity=0.098  Sum_probs=69.7

Q ss_pred             cccCCCCEEEEE-eCCCeEEEEcCC---CCc-----eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840           3 SSRNNGSFLATG-SYDGYARIWTSD---GSL-----KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ   73 (131)
Q Consensus         3 ~~~~~~~~l~~~-~~d~~i~~~~~~---~~~-----~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~   73 (131)
                      +|+|+++.++.+ +.++.|..|++.   +..     ...+..+.+....++++++|+++++....+.|..||..+++.+.
T Consensus       155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred             EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence            478999877554 457889999863   322     12223334567889999999988888888899999999899888


Q ss_pred             eeecCCCCeEEEEEc-CCCc-E-EEEe
Q psy3840          74 QFSFHSAPALDVDWQ-SNTS-F-ASCS   97 (131)
Q Consensus        74 ~~~~~~~~v~~~~~~-~~~~-~-~~~~   97 (131)
                      .+......+++++|. |++. | ++..
T Consensus       235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          235 TVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            887766678999998 6644 4 4443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.62  E-value=1.1e-06  Score=57.83  Aligned_cols=112  Identities=10%  Similarity=0.098  Sum_probs=79.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeeccc-------------ccccEEEEEEcCCCCEEEEEeC----------CCc
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQ-------------HKGPIFALKWNKRGNYILSAGV----------DKT   60 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~s~~~----------d~~   60 (131)
                      +.+++..++.....+.+.+.|..+..+.....             .......++++|+++.++....          ++.
T Consensus       272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~  351 (426)
T 3c75_H          272 FSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF  351 (426)
T ss_dssp             ECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE
T ss_pred             ecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE
Confidence            46777777777778888888875332211110             1122223688998887666542          357


Q ss_pred             EEEEECCCcceeeeeecCCCCeEEEEEcCCCc--EEEEe-CCCcEEEEeCCCCeeeEEE
Q psy3840          61 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCS-TDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        61 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~-~d~~i~i~d~~~~~~~~~~  116 (131)
                      +.++|..+.+.+..+... .....+.++|+++  +++.. .++.|.++|+.+++.+.++
T Consensus       352 VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          352 VVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            999999999999888753 3578899999975  55555 5899999999999999887

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.62  E-value=6.1e-06  Score=57.75  Aligned_cols=106  Identities=8%  Similarity=-0.040  Sum_probs=68.9

Q ss_pred             cccCCCCEEEEEeCCCe--------------EEEEcCCCCc-----eeecccccccEEEEEEcCCCCEEEEEeCC-----
Q psy3840           3 SSRNNGSFLATGSYDGY--------------ARIWTSDGSL-----KSTLGQHKGPIFALKWNKRGNYILSAGVD-----   58 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~--------------i~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~s~~~d-----   58 (131)
                      +|+|| +.|+.+..++.              |.+|++....     +.....+...+..+.|+|+|++++..+.+     
T Consensus       215 ~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  293 (741)
T 1yr2_A          215 AWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPV  293 (741)
T ss_dssp             EESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSC
T ss_pred             EEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCc
Confidence            58999 88888876554              8888876222     22222233458899999999988876644     


Q ss_pred             CcEEEEECCCc--ceeeeeecCCCCeEEEEEcCCCc-EEEEeC----CCcEEEEeCCCC
Q psy3840          59 KTTIIWDAASG--QCEQQFSFHSAPALDVDWQSNTS-FASCST----DQHIHVCKLHSD  110 (131)
Q Consensus        59 ~~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~----d~~i~i~d~~~~  110 (131)
                      ..+++||+.++  +....+..+........+ |++. ++..+.    +..|.+||+.++
T Consensus       294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          294 NTVHVARVTNGKIGPVTALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             CEEEEEEEETTEECCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             ceEEEEECCCCCCcccEEecCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            37999999876  314445444444444433 6655 555443    345999999874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.61  E-value=2.8e-06  Score=53.23  Aligned_cols=108  Identities=8%  Similarity=-0.044  Sum_probs=72.8

Q ss_pred             cccCCCC-EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee---c-
Q psy3840           3 SSRNNGS-FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---F-   77 (131)
Q Consensus         3 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---~-   77 (131)
                      .|+++++ +++++..++.|..|+..++ ...+......+..++++++++++++...++.|..|+.. ++......   . 
T Consensus        51 ~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~  128 (305)
T 3dr2_A           51 AWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGK  128 (305)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTE
T ss_pred             eEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCC
Confidence            3678888 5666667889999988654 34444556678899999999977776667889999975 54322111   1 


Q ss_pred             CCCCeEEEEEcCCCcEEE-----EeC-------------CCcEEEEeCCCCee
Q psy3840          78 HSAPALDVDWQSNTSFAS-----CST-------------DQHIHVCKLHSDKP  112 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~-----~~~-------------d~~i~i~d~~~~~~  112 (131)
                      ....+..+.+++++.+..     +..             .+.|+.+|..+++.
T Consensus       129 ~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~  181 (305)
T 3dr2_A          129 RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL  181 (305)
T ss_dssp             ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred             ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence            113467899999988544     321             24678888766643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.60  E-value=1.7e-05  Score=50.22  Aligned_cols=114  Identities=6%  Similarity=-0.068  Sum_probs=71.0

Q ss_pred             ccCCCCEEEEEeC------CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEE-eCCCcEEEEECC--Cc-ce--
Q psy3840           4 SRNNGSFLATGSY------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAA--SG-QC--   71 (131)
Q Consensus         4 ~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~--~~-~~--   71 (131)
                      ++++|++.++...      .+.|..++ .++. ..+.........++|+|+++.++.+ ..++.|.+||+.  ++ +.  
T Consensus       141 ~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~  218 (326)
T 2ghs_A          141 MHPSGALWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK  218 (326)
T ss_dssp             ECTTSCEEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred             ECCCCCEEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence            5678876665432      24555566 4332 2233333456789999999876554 457889999986  55 32  


Q ss_pred             ---eeeeecCCCCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          72 ---EQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        72 ---~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                         ...+.........+.+++++.+ ++...++.|..||. +++.+..+..+.
T Consensus       219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~  270 (326)
T 2ghs_A          219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG  270 (326)
T ss_dssp             CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC
T ss_pred             ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC
Confidence               1122222344678889999885 44445678999998 577666666554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.56  E-value=2.4e-06  Score=59.40  Aligned_cols=110  Identities=9%  Similarity=0.131  Sum_probs=77.7

Q ss_pred             CEEEEEeCCCeEEEEcCC-CCceeeccccc-----------ccE------------------------EEEEEcCCCCEE
Q psy3840           9 SFLATGSYDGYARIWTSD-GSLKSTLGQHK-----------GPI------------------------FALKWNKRGNYI   52 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~~~~   52 (131)
                      ..++.++.+|.++++|.. |+.+.......           .++                        ..++++|+..++
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~  407 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence            578888899999999976 66654432110           011                        146788988777


Q ss_pred             EEEeC-------------------------------------------CCcEEEEECCCcceeeeeecCCCCeEEEEEcC
Q psy3840          53 LSAGV-------------------------------------------DKTTIIWDAASGQCEQQFSFHSAPALDVDWQS   89 (131)
Q Consensus        53 ~s~~~-------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~   89 (131)
                      ++...                                           .+.+..||+.+++.+..+... .+.....+..
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~  486 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTT  486 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEE
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEe
Confidence            76533                                           167999999999988777643 3333333444


Q ss_pred             C-CcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          90 N-TSFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        90 ~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      + +.++.++.|+.+++||.++++.+.++...
T Consensus       487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            4 55777889999999999999999988643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.55  E-value=5.3e-06  Score=51.99  Aligned_cols=120  Identities=10%  Similarity=0.027  Sum_probs=73.7

Q ss_pred             ccCCCCEEEE----EeC-------------CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC------Cc
Q psy3840           4 SRNNGSFLAT----GSY-------------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD------KT   60 (131)
Q Consensus         4 ~~~~~~~l~~----~~~-------------d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d------~~   60 (131)
                      ++++|++.++    |..             .+.|..++.....+..+. .......++|+|+++.++.+...      +.
T Consensus       138 ~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~  216 (305)
T 3dr2_A          138 VARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE  216 (305)
T ss_dssp             ECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred             ECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence            5677887775    321             245777776432222222 34456789999999977777664      68


Q ss_pred             EEEEECCCccee--eeee-cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          61 TIIWDAASGQCE--QQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        61 i~~~d~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |..|++..+...  ..+. ........+++++++.+..+..+ .|.+|+. .++.+..+..+......+
T Consensus       217 i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~~~~~~~~  283 (305)
T 3dr2_A          217 ITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLGHIPTPGTASNCT  283 (305)
T ss_dssp             EEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEEEEECSSCCCEEE
T ss_pred             EEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEEEEECCCceeEEE
Confidence            999998654311  1111 11234567889999886666544 5999998 477777766544433333

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.52  E-value=4.4e-06  Score=54.07  Aligned_cols=119  Identities=14%  Similarity=-0.008  Sum_probs=79.0

Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCc---eeeccc----------ccccEEEEEEcCCCCEEEEEeC---------CCcEEE
Q psy3840           6 NNGSFLATGSYDGYARIWTSDGSL---KSTLGQ----------HKGPIFALKWNKRGNYILSAGV---------DKTTII   63 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~~~~---~~~~~~----------~~~~i~~~~~~~~~~~~~s~~~---------d~~i~~   63 (131)
                      +++..++..+. +.+.+.|..+..   +.....          .......+.++|+++.++.+..         ++.+.+
T Consensus       220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V  298 (368)
T 1mda_H          220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence            34444555455 778888875321   111110          1111122679999887776533         235669


Q ss_pred             EECCCcceeeeeecCCCCeEEEEEcCCCc--EEEEe-CCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          64 WDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCS-TDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        64 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      +|+.+.+.+..+.... ....+.++|+++  +++.. .++.|.++|+.+++.+.++.....+-..+
T Consensus       299 iD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~  363 (368)
T 1mda_H          299 VTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLS  363 (368)
T ss_dssp             EESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEE
T ss_pred             EECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEE
Confidence            9999999888887543 678899999976  56666 58999999999999999987655544433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.51  E-value=4.5e-06  Score=58.14  Aligned_cols=60  Identities=10%  Similarity=0.084  Sum_probs=45.7

Q ss_pred             CcEEEEECCCcceeeeeecCCCCeEEEEEc-CCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          59 KTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        59 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      |.++.||+.+++.+.....+. +...-.+. ..+.++.++.|+.++.||.++|+.+.+++..
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            779999999999888776543 22222333 3456788899999999999999999888754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.50  E-value=1.1e-05  Score=52.90  Aligned_cols=103  Identities=11%  Similarity=0.065  Sum_probs=69.0

Q ss_pred             cccCC-CCEEEEEeCCCeEEEEcCCCCceeeccccc---------------ccEEEEEEcCCCCEEEEEe-CCCcEEEEE
Q psy3840           3 SSRNN-GSFLATGSYDGYARIWTSDGSLKSTLGQHK---------------GPIFALKWNKRGNYILSAG-VDKTTIIWD   65 (131)
Q Consensus         3 ~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~~s~~-~d~~i~~~d   65 (131)
                      +++|+ +.++++...++.|+.|+..+.. ..+.++.               .....++++|+++++++-. .++.|+.|+
T Consensus       273 a~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          273 IYYFVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence            35674 5555555557889999987652 2222221               3468899999999888877 789999999


Q ss_pred             CCCcceeeeeecC---------------CCCeEEEEEcCCCcE-EEEeCCCcEEEEeC
Q psy3840          66 AASGQCEQQFSFH---------------SAPALDVDWQSNTSF-ASCSTDQHIHVCKL  107 (131)
Q Consensus        66 ~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~  107 (131)
                      +.++... .+.++               -.....+++++++.+ ++-..++.|+.+++
T Consensus       352 ~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          352 ILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            8777543 33222               135788999998774 55555667776654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.50  E-value=9.3e-06  Score=51.79  Aligned_cols=116  Identities=9%  Similarity=0.093  Sum_probs=75.8

Q ss_pred             cccCCCCEEEEEeC--CCeEEEEcC-CCCce------eecccccccEEEEEEcCCCCEEEEEeC-----CCcEEEEECCC
Q psy3840           3 SSRNNGSFLATGSY--DGYARIWTS-DGSLK------STLGQHKGPIFALKWNKRGNYILSAGV-----DKTTIIWDAAS   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~--d~~i~~~~~-~~~~~------~~~~~~~~~i~~~~~~~~~~~~~s~~~-----d~~i~~~d~~~   68 (131)
                      +++++|+.+++...  ++.+++|.+ .++..      .....+-..+..++++++++++++-..     +..|..||+.+
T Consensus        23 a~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t  102 (343)
T 2qe8_A           23 TLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN  102 (343)
T ss_dssp             EECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT
T ss_pred             EECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC
Confidence            35788888888642  342444443 33322      011234467899999999887766544     57899999998


Q ss_pred             cceeeeeecC------CCCeEEEEEcCC-Cc-EEEEe---CCCcEEEEeCCCCeeeEEEec
Q psy3840          69 GQCEQQFSFH------SAPALDVDWQSN-TS-FASCS---TDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        69 ~~~~~~~~~~------~~~v~~~~~~~~-~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ++.+..+...      ...+..++++++ +. +++..   .++.|.+||+.+++..+.+..
T Consensus       103 g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A          103 NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred             CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence            8866655421      134578999975 55 45544   578899999988876665543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.49  E-value=3.9e-05  Score=47.32  Aligned_cols=107  Identities=9%  Similarity=0.053  Sum_probs=74.3

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCcee-ecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee-eeecCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKS-TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~   81 (131)
                      +.++++..++...++.|..|+..++... .+......+..+++++++..+++...++.+..+|.. ++... ........
T Consensus        27 ~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~  105 (300)
T 2qc5_A           27 SSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSG  105 (300)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCC
T ss_pred             ECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCC
Confidence            4567777777666889999998743322 122233578899999999988887778889999987 54421 22223356


Q ss_pred             eEEEEEcCCCcE-EEEeCCCcEEEEeCCCCee
Q psy3840          82 ALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        82 v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~  112 (131)
                      +..+++.+++.+ ++...++.|..+|.. ++.
T Consensus       106 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A          106 PYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             EEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            889999998885 444447789999887 543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.48  E-value=1.4e-05  Score=50.64  Aligned_cols=101  Identities=9%  Similarity=-0.063  Sum_probs=65.9

Q ss_pred             cccCCC-CEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC---
Q psy3840           3 SSRNNG-SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH---   78 (131)
Q Consensus         3 ~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~---   78 (131)
                      .|+|++ ..+++...++.|..||..+.....+. ....+.++.++|+++++++. .+ .+.+||..+++........   
T Consensus        55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~  131 (326)
T 2ghs_A           55 TFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDL  131 (326)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTC
T ss_pred             eEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCC
Confidence            367764 45566666889999998755443332 34678999999999877765 33 4899998877643222111   


Q ss_pred             -CCCeEEEEEcCCCcEEEEeC-------CCcEEEEe
Q psy3840          79 -SAPALDVDWQSNTSFASCST-------DQHIHVCK  106 (131)
Q Consensus        79 -~~~v~~~~~~~~~~~~~~~~-------d~~i~i~d  106 (131)
                       ...+..+.++|++++..++.       .+.|+.++
T Consensus       132 ~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A          132 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence             12478899999988544432       24566666

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.46  E-value=5.1e-05  Score=50.32  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=77.1

Q ss_pred             CCCCEEEE-EeCCCeEEEEcCC-C----Cceeecc------cc-cccEEEEEEcCCCCEEEEEeCC------CcEEEEEC
Q psy3840           6 NNGSFLAT-GSYDGYARIWTSD-G----SLKSTLG------QH-KGPIFALKWNKRGNYILSAGVD------KTTIIWDA   66 (131)
Q Consensus         6 ~~~~~l~~-~~~d~~i~~~~~~-~----~~~~~~~------~~-~~~i~~~~~~~~~~~~~s~~~d------~~i~~~d~   66 (131)
                      +++++|++ +..+++|+++|+. .    +...++.      .. ...-..+.+.|++ .++++..+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            67777766 4458889999985 1    2223331      11 1134567788999 77766555      78999999


Q ss_pred             CCcceeeeeecCCCC---eEEEEEcCCCc-EEEEe-------------------CCCcEEEEeCCCCeeeEEEec
Q psy3840          67 ASGQCEQQFSFHSAP---ALDVDWQSNTS-FASCS-------------------TDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        67 ~~~~~~~~~~~~~~~---v~~~~~~~~~~-~~~~~-------------------~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .+.+.+..+.....+   -..+.|+|+++ +++..                   .+.+|.+||+.+++.+.++..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            999998888643222   34578899977 55553                   267899999998887777754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.44  E-value=5.3e-05  Score=46.71  Aligned_cols=107  Identities=10%  Similarity=0.037  Sum_probs=73.9

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee-eeecCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~-~~~~~~~~   81 (131)
                      +.+++++.++...++.|..+|..++.... .......+..+++++++.++++...++.+..+|.. ++... .+......
T Consensus        69 ~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~  147 (300)
T 2qc5_A           69 VSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSY  147 (300)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCC
T ss_pred             ECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCC
Confidence            45677777766557889999987544321 12233568899999999988887778899999987 54432 22223456


Q ss_pred             eEEEEEcCCCcE-EEEeCCCcEEEEeCCCCee
Q psy3840          82 ALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        82 v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~  112 (131)
                      +..+++.+++.+ ++...++.|..+|. +++.
T Consensus       148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~  178 (300)
T 2qc5_A          148 PAFITLGSDNALWFTENQNNSIGRITN-TGKL  178 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECC-CCcE
Confidence            889999998885 44444678999998 4543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.37  E-value=3.8e-05  Score=49.34  Aligned_cols=111  Identities=6%  Similarity=-0.002  Sum_probs=76.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccc---------cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQH---------KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~---------~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      .+..+++++.++.|..+|.. ++.+......         ...+... ....+..++.++.++.+..+|..+++.+....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            46788888889999999986 7766554432         1222221 12245677788889999999999999877665


Q ss_pred             cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          77 FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ........... .++.++.++.++.+..+|.++++.+......
T Consensus       131 ~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          131 VAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             CSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             CCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            43222111112 2566788888999999999999888776543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.36  E-value=5.2e-06  Score=53.75  Aligned_cols=100  Identities=4%  Similarity=-0.195  Sum_probs=72.8

Q ss_pred             CCEEEEEeC-CC----eEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCcce
Q psy3840           8 GSFLATGSY-DG----YARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAASGQC   71 (131)
Q Consensus         8 ~~~l~~~~~-d~----~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~~~~~   71 (131)
                      ...+++... ++    +|.++|.. ++.+.++.....+  .+.++|+++.++++.          .++.+.+||+.+++.
T Consensus        31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             CCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            344544443 44    78899987 6666666554455  799999999888876          368899999999999


Q ss_pred             eeeeecC-------CCCeEEEEEcCCCc-EEEEeC--CCcEEE--EeCCC
Q psy3840          72 EQQFSFH-------SAPALDVDWQSNTS-FASCST--DQHIHV--CKLHS  109 (131)
Q Consensus        72 ~~~~~~~-------~~~v~~~~~~~~~~-~~~~~~--d~~i~i--~d~~~  109 (131)
                      +..+...       ......+.++|+++ ++.+..  +..+.+  +|+.+
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            8887643       12456799999987 655543  457888  99876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.36  E-value=2.2e-05  Score=48.64  Aligned_cols=111  Identities=9%  Similarity=0.051  Sum_probs=70.5

Q ss_pred             ccCCCCEEEEEeC--CCeEEEEcCC-CCceeeccccc-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           4 SRNNGSFLATGSY--DGYARIWTSD-GSLKSTLGQHK-GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         4 ~~~~~~~l~~~~~--d~~i~~~~~~-~~~~~~~~~~~-~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +++++....+.+.  ++.|+++|.. ++.+..+.-.. .....+++. .+..+++.-.++.+.++|..+.+.+..+....
T Consensus        28 ~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~  106 (266)
T 2iwa_A           28 YAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQM  106 (266)
T ss_dssp             ECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCS
T ss_pred             EeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCC
Confidence            5676544444333  5789999987 66665543211 122345554 23444555568899999999999888886431


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..-+.+  ++++. ++.+..++.+.++|..+.+.+..+.
T Consensus       107 ~~g~gl--t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A          107 KDGWGL--ATDGKILYGSDGTSILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             SSCCEE--EECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             CCeEEE--EECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            222334  44544 6555678899999999988777765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.36  E-value=1.2e-05  Score=50.47  Aligned_cols=105  Identities=15%  Similarity=0.097  Sum_probs=72.6

Q ss_pred             CCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEE
Q psy3840           8 GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW   87 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~   87 (131)
                      +..+.+++.++.+..+|..++...........+.++...+++. +..++.++.+..+|.. ++....+......+.++..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            4567777778889999977665555544444455666666676 4456677889999988 7776666554555667777


Q ss_pred             cCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          88 QSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        88 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .+++.+..++  +.+..+| .+++.+..+.
T Consensus       185 d~~g~l~v~t--~~l~~~d-~~g~~~~~~~  211 (330)
T 3hxj_A          185 GKDGTIYFGS--DKVYAIN-PDGTEKWNFY  211 (330)
T ss_dssp             CTTCCEEEES--SSEEEEC-TTSCEEEEEC
T ss_pred             cCCCEEEEEe--CEEEEEC-CCCcEEEEEc
Confidence            7777766666  7888888 6676665544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.32  E-value=0.0001  Score=51.32  Aligned_cols=116  Identities=8%  Similarity=0.020  Sum_probs=72.4

Q ss_pred             cccCCCCEEEEEeCCC-------------eEEEEcCCCC-----ceeeccc-ccccEEEEEEcCCCCEEEEEeC----CC
Q psy3840           3 SSRNNGSFLATGSYDG-------------YARIWTSDGS-----LKSTLGQ-HKGPIFALKWNKRGNYILSAGV----DK   59 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~-------------~i~~~~~~~~-----~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~----d~   59 (131)
                      +|+ |++.|+.+..+.             .|.+|++...     .+..... +......+.++|++++++....    .+
T Consensus       181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  259 (693)
T 3iuj_A          181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN  259 (693)
T ss_dssp             EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred             EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence            478 999998888774             3888987622     2222233 4455788999999998754332    35


Q ss_pred             cEEEEECCCcc-eeeeeecCCCCeEEEEEcCC-CcE-EEEeCC---CcEEEEeCCCCee--eEEEeccc
Q psy3840          60 TTIIWDAASGQ-CEQQFSFHSAPALDVDWQSN-TSF-ASCSTD---QHIHVCKLHSDKP--VKSFEGHT  120 (131)
Q Consensus        60 ~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~-~~~~~d---~~i~i~d~~~~~~--~~~~~~~~  120 (131)
                      .++++|+.++. ....+..+....... ++++ +.+ +....+   ..|..+|+.++..  ...+..|.
T Consensus       260 ~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  327 (693)
T 3iuj_A          260 RLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER  327 (693)
T ss_dssp             EEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             EEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC
Confidence            89999998763 344555444444444 4454 444 444433   5799999987643  33444443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.32  E-value=1.8e-05  Score=49.63  Aligned_cols=104  Identities=15%  Similarity=0.127  Sum_probs=74.2

Q ss_pred             CEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEc
Q psy3840           9 SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ   88 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~   88 (131)
                      ..+..++.++.+..+|..++...........+.++...+++..++..   +.+..+| .+++...........+.++...
T Consensus       148 g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~  223 (330)
T 3hxj_A          148 GTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS  223 (330)
T ss_dssp             SCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEEC
T ss_pred             CEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEEC
Confidence            44666777889999998766655555444556667777777765544   7889999 7777766665555567788888


Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          89 SNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        89 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +++.+..++.++.+..+|. +++.+..+.
T Consensus       224 ~~g~l~v~t~~~gl~~~~~-~g~~~~~~~  251 (330)
T 3hxj_A          224 EDGTIYVTSLDGHLYAINP-DGTEKWRFK  251 (330)
T ss_dssp             TTSCEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             CCCeEEEEcCCCeEEEECC-CCCEeEEee
Confidence            8888878888888888874 565555554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.23  E-value=4.3e-05  Score=47.21  Aligned_cols=106  Identities=11%  Similarity=0.097  Sum_probs=71.6

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccE--EEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPI--FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD   84 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~   84 (131)
                      +.+..+.+.+|.|+.+|+. ++.+..+  -....  ..+++. .++.+...-.++.+.++|..+.+.+.++... ..-+.
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwG  140 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWG  140 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeE
Confidence            4555666678899999987 6655555  22222  334543 3355555556899999999999999888753 33345


Q ss_pred             EEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          85 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        85 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      +++. .++++.+..++.|+++|..+.+.+.++..
T Consensus       141 Lt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          141 LCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             EEEE-TTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            5543 23466666688999999999888877653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.23  E-value=5.2e-05  Score=51.83  Aligned_cols=61  Identities=10%  Similarity=-0.003  Sum_probs=44.4

Q ss_pred             CCcEEEEECCCcceeeeeecCCCCeEEEE-EcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          58 DKTTIIWDAASGQCEQQFSFHSAPALDVD-WQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        58 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ++.+..||+.+++.+..+.... .+.... ...++.++.++.|+.++.+|.++++.+.++...
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            4789999999999887765432 222221 223566777889999999999999999888643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.22  E-value=3.9e-05  Score=47.31  Aligned_cols=107  Identities=13%  Similarity=0.154  Sum_probs=69.6

Q ss_pred             CCCEEEEEeCCC--eEEEEcCC-CCceeeccccccc-EEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           7 NGSFLATGSYDG--YARIWTSD-GSLKSTLGQHKGP-IFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         7 ~~~~l~~~~~d~--~i~~~~~~-~~~~~~~~~~~~~-i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      ++.+..+.+.+|  .|+.+|+. ++.+..+...... -..+..  .+..+. ..-.++.+.++|..+.+.+.++.... .
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-e  128 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-E  128 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-C
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-C
Confidence            455555666665  89999987 6665555432221 123443  344444 44458899999999999998887543 3


Q ss_pred             eEEEEEcCCC-cEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          82 ALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        82 v~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      -+.+++  ++ +++.+..++.|.++|..+.+.+.++..
T Consensus       129 G~glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          129 GWGLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             CCCEEE--CSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             ceEEec--CCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            344543  44 466666678899999999887777643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.21  E-value=8.2e-05  Score=46.10  Aligned_cols=106  Identities=11%  Similarity=0.021  Sum_probs=75.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeeccccc-----ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHK-----GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~-----~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~   77 (131)
                      +++|++.++++..++.|.++|.. .+.+..+....     .....+.+. ++..++....++.|.+.|..+++.+..+..
T Consensus       112 lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          112 LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence            45678888877778899999987 44444443211     135677777 676555555688999999999998887753


Q ss_pred             C-------------CCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCC
Q psy3840          78 H-------------SAPALDVDWQSNTS--FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        78 ~-------------~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~  110 (131)
                      .             ......++++|++.  ++++...+.+.+.++...
T Consensus       191 ~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          191 PNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             HHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            2             13568999999864  677778888888887643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.21  E-value=0.00018  Score=46.22  Aligned_cols=106  Identities=11%  Similarity=0.046  Sum_probs=73.6

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC-CCCeEEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-SAPALDV   85 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~   85 (131)
                      +..++.++.++.+..+|.. ++.+.....  .....+..  ++..++.++.++.+..+|..+++.+...... .......
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  314 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP  314 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence            4677788888999999986 666554432  22333333  4667778888999999999999887665521 1122222


Q ss_pred             EEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          86 DWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        86 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .. .++.++.++.++.++.+|.++++.+.....
T Consensus       315 ~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          315 VL-YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EE-ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EE-ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            22 246688888899999999999998877764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.18  E-value=5.5e-05  Score=51.74  Aligned_cols=83  Identities=11%  Similarity=0.091  Sum_probs=61.7

Q ss_pred             cEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcc------------eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEE
Q psy3840          39 PIFALKWNKRGNYILSAGV-DKTTIIWDAASGQ------------CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV  104 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i  104 (131)
                      ...++.++|||+++++++. +.++.++|+.+.+            ...... -......++|+|+|. +++.--|++|.+
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~k  356 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVK  356 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEE
Confidence            3467899999998887765 8899999998653            222222 235678899999997 567778999999


Q ss_pred             EeCCC----------CeeeEEEecccce
Q psy3840         105 CKLHS----------DKPVKSFEGHTRV  122 (131)
Q Consensus       105 ~d~~~----------~~~~~~~~~~~~~  122 (131)
                      ||+.+          .+.+.++..|.++
T Consensus       357 wdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          357 WNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             EEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             EEhhHhhhhhcccccceeEEEeeccccc
Confidence            99976          5667777666443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.15  E-value=8.2e-05  Score=50.99  Aligned_cols=61  Identities=16%  Similarity=0.085  Sum_probs=44.5

Q ss_pred             CCcEEEEECCCcceeeeeecCCCCeEE-EEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          58 DKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        58 d~~i~~~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ++.+..||+.+++.+....... +... .....++.++.++.|+.++.||.++++.+.+++..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence            5789999999999887765432 2211 11123566777899999999999999999888654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.11  E-value=0.00032  Score=44.69  Aligned_cols=73  Identities=5%  Similarity=0.010  Sum_probs=46.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCC-cEEEEECC---Ccc-----eee--eeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeC
Q psy3840          40 IFALKWNKRGNYILSAGVDK-TTIIWDAA---SGQ-----CEQ--QFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKL  107 (131)
Q Consensus        40 i~~~~~~~~~~~~~s~~~d~-~i~~~d~~---~~~-----~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~  107 (131)
                      +..++++|+++.++.+...+ .+..++..   .+.     ...  ...++......+++++++. +++...++.|.+||.
T Consensus       197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            57899999999888877665 44444431   111     001  1112233556789999988 566667789999998


Q ss_pred             CCCee
Q psy3840         108 HSDKP  112 (131)
Q Consensus       108 ~~~~~  112 (131)
                      ++++.
T Consensus       277 ~~G~~  281 (343)
T 2qe8_A          277 ADRAY  281 (343)
T ss_dssp             TTTEE
T ss_pred             CCCCE
Confidence            55654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.08  E-value=0.00029  Score=43.05  Aligned_cols=108  Identities=11%  Similarity=0.061  Sum_probs=69.2

Q ss_pred             CCEEEEEeCCC--eEEEEcCC-CCceeeccccccc-EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           8 GSFLATGSYDG--YARIWTSD-GSLKSTLGQHKGP-IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         8 ~~~l~~~~~d~--~i~~~~~~-~~~~~~~~~~~~~-i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      +.+..+.+.+|  .|+.+|+. ++.+......... -..++.. .++.+...-.++.+.++|..+.+.+.++.... .-+
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gw  108 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGW  108 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCC
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-Cce
Confidence            34444444443  89999987 6555544322221 1233333 24444455568999999999999998887543 335


Q ss_pred             EEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          84 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        84 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .++.. .++++.+..++.|.++|..+.+.+.++.-
T Consensus       109 glt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X          109 ALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             EEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            55542 23466666688999999999888777653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.04  E-value=0.0001  Score=51.91  Aligned_cols=107  Identities=10%  Similarity=0.050  Sum_probs=65.7

Q ss_pred             ccc-CCCCEEEEEeC-CC----eEEEEcCCCC-ceeecccccccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc
Q psy3840           3 SSR-NNGSFLATGSY-DG----YARIWTSDGS-LKSTLGQHKGPIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~-~~~~~l~~~~~-d~----~i~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~   70 (131)
                      .|| |||++|+.+.. +|    .|+++|+.+. .... ..-......+.|+|+++.++....+     ..|+.+++.++.
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~  258 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ  258 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence            468 99998886543 33    4999998744 3111 1111223467899999877766554     257778887654


Q ss_pred             ee--eeeec-CCCCeEEEEEcCCCc-EEEEe---CCCcEEEEeCCCC
Q psy3840          71 CE--QQFSF-HSAPALDVDWQSNTS-FASCS---TDQHIHVCKLHSD  110 (131)
Q Consensus        71 ~~--~~~~~-~~~~v~~~~~~~~~~-~~~~~---~d~~i~i~d~~~~  110 (131)
                      ..  ..+.. .......+.|+|+++ |+...   ....|+++|+.++
T Consensus       259 ~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          259 SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            22  22222 223456788999987 44333   2346888998765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.97  E-value=0.00049  Score=47.42  Aligned_cols=61  Identities=7%  Similarity=-0.069  Sum_probs=43.2

Q ss_pred             CCcEEEEECCCcceeeeeecCCCCeE-EEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          58 DKTTIIWDAASGQCEQQFSFHSAPAL-DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        58 d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      .+.+..||+.+++.+...... .+.. ......++.++.++.|+.++.||.++|+.+.+++..
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence            467889999999887776532 1221 111123466777889999999999999999888643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.95  E-value=0.0002  Score=49.88  Aligned_cols=61  Identities=8%  Similarity=0.177  Sum_probs=44.9

Q ss_pred             CCcEEEEECCCcceeeeeecCCCCeEEEEE-cCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          58 DKTTIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        58 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ++.+..||+.+++.+....... +...... ..++.++.++.|+.++.||.++++.+..+...
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            3779999999999887766432 2222222 23456788899999999999999999888654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.94  E-value=0.00051  Score=48.03  Aligned_cols=71  Identities=14%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             ccCCCCEEEEEeCCCe-------------------EEEEcCC-CCceeeccc--cc-------ccEEEEEEcCCCC---E
Q psy3840           4 SRNNGSFLATGSYDGY-------------------ARIWTSD-GSLKSTLGQ--HK-------GPIFALKWNKRGN---Y   51 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~-------------------i~~~~~~-~~~~~~~~~--~~-------~~i~~~~~~~~~~---~   51 (131)
                      ++++..+++.+..++.                   |..+|.. |+.+..++.  |.       .+........+++   .
T Consensus       242 ~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~  321 (689)
T 1yiq_A          242 YDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKV  321 (689)
T ss_dssp             EETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEE
T ss_pred             EcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEE
Confidence            4667788888877763                   8889987 777766543  21       1222222223554   6


Q ss_pred             EEEEeCCCcEEEEECCCcceeee
Q psy3840          52 ILSAGVDKTTIIWDAASGQCEQQ   74 (131)
Q Consensus        52 ~~s~~~d~~i~~~d~~~~~~~~~   74 (131)
                      ++.++.+|.++++|.++|+.+..
T Consensus       322 v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          322 LMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEECCCCeEEEEECCCCCEecc
Confidence            88889999999999999988743

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.94  E-value=0.00089  Score=41.00  Aligned_cols=107  Identities=4%  Similarity=-0.111  Sum_probs=65.4

Q ss_pred             ccCCCCEEEEEe-CCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcceeeeee-c
Q psy3840           4 SRNNGSFLATGS-YDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQCEQQFS-F   77 (131)
Q Consensus         4 ~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~~~~~~~-~   77 (131)
                      +++++..++.+. ..+.|.+++..+.....+.. .......++++|++..++.+..   .+.|..+++.... ...+. .
T Consensus        86 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~  164 (267)
T 1npe_A           86 LDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQD  164 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECT
T ss_pred             EEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEEC
Confidence            455555555444 46788888887544333322 1245688999996555544443   3678888875432 22222 2


Q ss_pred             CCCCeEEEEEcCCC-cE-EEEeCCCcEEEEeCCCCe
Q psy3840          78 HSAPALDVDWQSNT-SF-ASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        78 ~~~~v~~~~~~~~~-~~-~~~~~d~~i~i~d~~~~~  111 (131)
                      .......+++++++ .+ ++....+.|.++|+....
T Consensus       165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            23457889999974 54 555556789999987543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.93  E-value=0.00074  Score=41.80  Aligned_cols=109  Identities=9%  Similarity=0.046  Sum_probs=74.2

Q ss_pred             CCCCEEEEEe-CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC----
Q psy3840           6 NNGSFLATGS-YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS----   79 (131)
Q Consensus         6 ~~~~~l~~~~-~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~----   79 (131)
                      ++++.|.... .++.+.+||.. .+.+.++.-- ..-+.++  +++..++.+..++.+.++|..+.+.+..+....    
T Consensus       103 ~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~  179 (268)
T 3nok_A          103 SDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP  179 (268)
T ss_dssp             ECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred             EeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence            3455555543 48889999987 5555555432 2213333  567777777778999999999998887776422    


Q ss_pred             -CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          80 -APALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        80 -~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                       ..++.+.|. ++++ +..-.+..|.+.|.++++.+..+..
T Consensus       180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred             cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence             234667776 6674 4444577899999999998888763

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.91  E-value=0.0012  Score=41.64  Aligned_cols=107  Identities=8%  Similarity=0.018  Sum_probs=67.3

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeecc--------------------cccccEEEEEEcC-CCCEEEEEeCCCcEE
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLG--------------------QHKGPIFALKWNK-RGNYILSAGVDKTTI   62 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--------------------~~~~~i~~~~~~~-~~~~~~s~~~d~~i~   62 (131)
                      +.++++++.++..++.|..|+..+.....+.                    ........+++++ ++++++ +...+.+.
T Consensus        26 ~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~d~~~~i~  104 (322)
T 2fp8_A           26 FDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-VDCYYHLS  104 (322)
T ss_dssp             CCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-EETTTEEE
T ss_pred             EcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-EECCCCEE
Confidence            5678887888888899999987754333221                    0123568899998 565444 44445588


Q ss_pred             EEECCCcceeeeeec-----CCCCeEEEEEcC-CCcEEEEeC------------------CCcEEEEeCCCCee
Q psy3840          63 IWDAASGQCEQQFSF-----HSAPALDVDWQS-NTSFASCST------------------DQHIHVCKLHSDKP  112 (131)
Q Consensus        63 ~~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~------------------d~~i~i~d~~~~~~  112 (131)
                      .+|..+++. ..+..     .......+++.+ ++.+..+..                  ++.+..+|..+++.
T Consensus       105 ~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A          105 VVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             EECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             EEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            888765532 22211     113467899999 888544332                  25688888876653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.88  E-value=0.0012  Score=40.49  Aligned_cols=113  Identities=10%  Similarity=0.029  Sum_probs=71.5

Q ss_pred             ccCCCCEEEEEeC---CCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCcceeeeeecC
Q psy3840           4 SRNNGSFLATGSY---DGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQFSFH   78 (131)
Q Consensus         4 ~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~~~~~~~~~~~~   78 (131)
                      ++|++..++.+..   .+.|..++..+.....+. ........++++|++..++.+ ...+.|..+|+........... 
T Consensus       129 vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-  207 (267)
T 1npe_A          129 TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-  207 (267)
T ss_dssp             EETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-
T ss_pred             EeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-
Confidence            5665555555443   367888887754433332 222456889999977655554 4568899999876543333332 


Q ss_pred             CCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          79 SAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        79 ~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ......++.. ++. +++...++.|..+|..+++.+..+..
T Consensus       208 ~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          208 LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence            2344566665 455 45555567999999999988888753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.87  E-value=0.00048  Score=42.54  Aligned_cols=109  Identities=8%  Similarity=0.087  Sum_probs=73.2

Q ss_pred             CCCCEEEEEe-CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC----
Q psy3840           6 NNGSFLATGS-YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS----   79 (131)
Q Consensus         6 ~~~~~l~~~~-~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~----   79 (131)
                      ++++.|.... .++.+.+||.. .+.+.++.--.   ....+++++..++..+.++.+.++|..+.+.+..+....    
T Consensus        94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~  170 (262)
T 3nol_A           94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE  170 (262)
T ss_dssp             EETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE
T ss_pred             EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc
Confidence            3455666554 47889999986 55555554321   112333566666666667889999999988887766421    


Q ss_pred             -CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          80 -APALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        80 -~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                       ..++.+.|. ++++ +..-.++.|.+.|.++++.+..+..
T Consensus       171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence             234557776 6674 4444577999999999999888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.83  E-value=0.0006  Score=45.37  Aligned_cols=106  Identities=9%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             ccCCCCEEEEEeCC------CeEEEEcCC-CCceeecccc--c-ccEEEEEEcCCCCEEEEEe-----------------
Q psy3840           4 SRNNGSFLATGSYD------GYARIWTSD-GSLKSTLGQH--K-GPIFALKWNKRGNYILSAG-----------------   56 (131)
Q Consensus         4 ~~~~~~~l~~~~~d------~~i~~~~~~-~~~~~~~~~~--~-~~i~~~~~~~~~~~~~s~~-----------------   56 (131)
                      ..|+| +++++..+      +.+.++|.. ++.+.+...-  . ..-..+-|+|+++.+++..                 
T Consensus       145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~  223 (462)
T 2ece_A          145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK  223 (462)
T ss_dssp             ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred             ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence            46788 66665555      689999987 5666555422  1 2234577899999988885                 


Q ss_pred             --CCCcEEEEECCCcceeeeeecC--CCCeEEEEE--cCCCc--EEEEe-----CCCcEEEEeCCCC
Q psy3840          57 --VDKTTIIWDAASGQCEQQFSFH--SAPALDVDW--QSNTS--FASCS-----TDQHIHVCKLHSD  110 (131)
Q Consensus        57 --~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~--~~~~~--~~~~~-----~d~~i~i~d~~~~  110 (131)
                        ...+|.+||+.+++.+.++...  ......+.|  +|+++  ++++.     .+++|.+|....+
T Consensus       224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g  290 (462)
T 2ece_A          224 DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG  290 (462)
T ss_dssp             HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred             hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence              3689999999998877777642  123455656  89876  45555     6678877665544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=0.0015  Score=43.16  Aligned_cols=107  Identities=7%  Similarity=0.079  Sum_probs=65.7

Q ss_pred             ccC-CCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CC----cEEEEECCCccee--eee
Q psy3840           4 SRN-NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK----TTIIWDAASGQCE--QQF   75 (131)
Q Consensus         4 ~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~----~i~~~d~~~~~~~--~~~   75 (131)
                      ++| ++..|+++...+.|+.+|..+..+..+.........++++++++.++.+.. ++    .+..++ ..+...  ..+
T Consensus       144 vdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l  222 (430)
T 3tc9_A          144 FDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITEL  222 (430)
T ss_dssp             EETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEE
T ss_pred             ECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeee
Confidence            455 345566655557788888886655555444456789999999996665554 22    233344 333222  222


Q ss_pred             ecCCCCeEEEEEcC-CCcEE-EEeCCCcEEEEeCCCCee
Q psy3840          76 SFHSAPALDVDWQS-NTSFA-SCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        76 ~~~~~~v~~~~~~~-~~~~~-~~~~d~~i~i~d~~~~~~  112 (131)
                      .. ......++++| ++.++ +-..++.|+.++...+..
T Consensus       223 ~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~  260 (430)
T 3tc9_A          223 TK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET  260 (430)
T ss_dssp             EE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE
T ss_pred             cc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE
Confidence            22 23457788999 67754 444667899999886654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.78  E-value=0.0001  Score=50.44  Aligned_cols=108  Identities=11%  Similarity=0.167  Sum_probs=69.6

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCCCC-------------ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSDGS-------------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      .++|||+++++++. +.+|.++|+...             ...... -......++|+|+|..+++...|+++..||+..
T Consensus       283 ~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          283 NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            36899998888765 778999998622             122222 223467889999995455666799999999876


Q ss_pred             ----------cceeeeeecCCCCeE-----EEEEcCCCc-EEEEeC-C-CcE-----------EEEeCCCCe
Q psy3840          69 ----------GQCEQQFSFHSAPAL-----DVDWQSNTS-FASCST-D-QHI-----------HVCKLHSDK  111 (131)
Q Consensus        69 ----------~~~~~~~~~~~~~v~-----~~~~~~~~~-~~~~~~-d-~~i-----------~i~d~~~~~  111 (131)
                                .+.+..+..+..+-.     .+..+|||+ +++... . ..+           .++|+..++
T Consensus       362 a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          362 AIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             HHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             hhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence                      445566665543321     223468888 544432 1 233           889996543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.77  E-value=0.0011  Score=46.32  Aligned_cols=110  Identities=12%  Similarity=0.153  Sum_probs=74.6

Q ss_pred             CCEEEEEeC------CCeEEEEcCC-CCceeecccccc--------------------------------cEEEEEEcCC
Q psy3840           8 GSFLATGSY------DGYARIWTSD-GSLKSTLGQHKG--------------------------------PIFALKWNKR   48 (131)
Q Consensus         8 ~~~l~~~~~------d~~i~~~~~~-~~~~~~~~~~~~--------------------------------~i~~~~~~~~   48 (131)
                      +..+++++.      ++.|+.+|.. |+.+..+.....                                ....+.++|+
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            455666553      6889999976 776655432111                                1124678888


Q ss_pred             CCEEEEEeCCC-------------------cEEEEECCCcceeeeeecCCC---------CeEEEEEcCCC---c-EEEE
Q psy3840          49 GNYILSAGVDK-------------------TTIIWDAASGQCEQQFSFHSA---------PALDVDWQSNT---S-FASC   96 (131)
Q Consensus        49 ~~~~~s~~~d~-------------------~i~~~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~---~-~~~~   96 (131)
                      +..++.+..++                   .+..+|..+++.+..++....         .........++   . ++.+
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~  333 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA  333 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence            88888776654                   489999999998887764211         12222222354   3 7888


Q ss_pred             eCCCcEEEEeCCCCeeeEEEe
Q psy3840          97 STDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        97 ~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +.+|.++++|.++|+.+..+.
T Consensus       334 ~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          334 PKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             CTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEEEECCCCCEecccc
Confidence            899999999999999987765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.74  E-value=0.0021  Score=39.26  Aligned_cols=107  Identities=11%  Similarity=0.013  Sum_probs=71.3

Q ss_pred             CCCEEEEE-eCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC-----
Q psy3840           7 NGSFLATG-SYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS-----   79 (131)
Q Consensus         7 ~~~~l~~~-~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-----   79 (131)
                      .++.|... ..++.+.+||.. .+.+.++.--.. -+.++  +++..++.+..++.+.++|..+.+.+..+....     
T Consensus        73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~  149 (243)
T 3mbr_X           73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL  149 (243)
T ss_dssp             ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc
Confidence            34555544 448889999986 555555442222 23443  456666666678899999999988887776422     


Q ss_pred             CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          80 APALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        80 ~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..++.+.|. ++++ +..-.+..|.+.|.++++.+..+.
T Consensus       150 ~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          150 DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            244566665 6664 444457789999999999888876

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.54  E-value=0.0053  Score=38.43  Aligned_cols=107  Identities=15%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCcceeeeeec-CC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK--TTIIWDAASGQCEQQFSF-HS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~--~i~~~d~~~~~~~~~~~~-~~   79 (131)
                      +++++++++++-..++.|..||..++...... .......++++++++++++.....  .+..+|..+++....... ..
T Consensus        38 a~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~  116 (306)
T 2p4o_A           38 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA  116 (306)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC
T ss_pred             EECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCc
Confidence            35678886666667889999998765443322 234678899999999766654432  466677777764322221 11


Q ss_pred             CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCCC
Q psy3840          80 APALDVDWQSNTSF-ASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        80 ~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~~  110 (131)
                      .....++..+++.+ ++...++.|+.+|..++
T Consensus       117 ~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A          117 IFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             SCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            22344555555664 44445788888887654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.53  E-value=0.004  Score=39.18  Aligned_cols=104  Identities=12%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             cccCCCCEEEEE-eCCCeEEEEcCCCCc---eeecccccccEEEEEEcCCCCEEEEEeC----------CCcEEEEECCC
Q psy3840           3 SSRNNGSFLATG-SYDGYARIWTSDGSL---KSTLGQHKGPIFALKWNKRGNYILSAGV----------DKTTIIWDAAS   68 (131)
Q Consensus         3 ~~~~~~~~l~~~-~~d~~i~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~s~~~----------d~~i~~~d~~~   68 (131)
                      +++++++.++.+ ..++.|..|++.+..   ...+....+ ...++++++|+++++...          .+.+..+|. .
T Consensus       191 a~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~  268 (322)
T 2fp8_A          191 EVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-F  268 (322)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-T
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-C
Confidence            467888876665 446789999876421   111111223 678899999997777654          456778886 4


Q ss_pred             cceeeeeecCC----CCeEEEEEcCCCcE-EEEeCCCcEEEEeCCC
Q psy3840          69 GQCEQQFSFHS----APALDVDWQSNTSF-ASCSTDQHIHVCKLHS  109 (131)
Q Consensus        69 ~~~~~~~~~~~----~~v~~~~~~~~~~~-~~~~~d~~i~i~d~~~  109 (131)
                      ++.+..+....    ..+..+.+ .+++| ++...++.|..+++..
T Consensus       269 G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          269 GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            66666655332    23555555 35664 4545667888888753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.52  E-value=0.0066  Score=39.16  Aligned_cols=119  Identities=15%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCC----CC---EEEEEe-C--CCcEEEEECC--Ccceeee
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR----GN---YILSAG-V--DKTTIIWDAA--SGQCEQQ   74 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~~~s~~-~--d~~i~~~d~~--~~~~~~~   74 (131)
                      ...+++.....+-+.+||+.|+.+..+..  +.+..+...|+    ++   ++++.. .  ++++.+|++.  +++ +..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            44556666677889999999998887754  45666666653    22   233333 3  5789999763  333 443


Q ss_pred             eec-------CCCCeEEEEE--cCC-Cc--EEEEeCCCcEEEEeCC-------CCeeeEEEecccceEEEEee
Q psy3840          75 FSF-------HSAPALDVDW--QSN-TS--FASCSTDQHIHVCKLH-------SDKPVKSFEGHTRVYYLAMD  128 (131)
Q Consensus        75 ~~~-------~~~~v~~~~~--~~~-~~--~~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~  128 (131)
                      +..       ....+..++.  +|. ++  ++....++.+..|++.       +.+.++++....+.-.++.|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvD  188 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAAD  188 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEc
Confidence            321       1134555666  664 53  5667778999998882       33667777766555555554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.47  E-value=0.0061  Score=37.54  Aligned_cols=105  Identities=10%  Similarity=0.089  Sum_probs=66.6

Q ss_pred             cccCCCCEEEE-EeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce---eeeee-
Q psy3840           3 SSRNNGSFLAT-GSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC---EQQFS-   76 (131)
Q Consensus         3 ~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~---~~~~~-   76 (131)
                      ++.|+++.|++ ...++.|...|..++.+..+.- -......+++.+++.++++...++.+.++++.....   +.... 
T Consensus        33 a~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~  112 (255)
T 3qqz_A           33 TWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKI  112 (255)
T ss_dssp             EEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEEC
T ss_pred             EEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecc
Confidence            35676665554 6667788888988777666532 124567888888888777776788899988765432   12221 


Q ss_pred             -----cCCCCeEEEEEcCCC-cEEEEeCCCcEEEEeC
Q psy3840          77 -----FHSAPALDVDWQSNT-SFASCSTDQHIHVCKL  107 (131)
Q Consensus        77 -----~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~  107 (131)
                           ..+.....++|+|.+ ++.++.......+|.+
T Consensus       113 ~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A          113 PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence                 123456899999986 4555544433344443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.45  E-value=0.008  Score=41.97  Aligned_cols=110  Identities=7%  Similarity=0.105  Sum_probs=72.6

Q ss_pred             CCEEEEEeC------CCeEEEEcCC-CCceeecccc---c----------------------------ccEEEEEEcCCC
Q psy3840           8 GSFLATGSY------DGYARIWTSD-GSLKSTLGQH---K----------------------------GPIFALKWNKRG   49 (131)
Q Consensus         8 ~~~l~~~~~------d~~i~~~~~~-~~~~~~~~~~---~----------------------------~~i~~~~~~~~~   49 (131)
                      +..++++..      ++.|..+|.. |+.+..+...   .                            .....++++|+.
T Consensus       162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~  241 (668)
T 1kv9_A          162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL  241 (668)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT
T ss_pred             CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC
Confidence            345555543      5889999986 7766654321   0                            011246788888


Q ss_pred             CEEEEEeCCC-------------------cEEEEECCCcceeeeeecCC---------CCeEEEEEcCCCc----EEEEe
Q psy3840          50 NYILSAGVDK-------------------TTIIWDAASGQCEQQFSFHS---------APALDVDWQSNTS----FASCS   97 (131)
Q Consensus        50 ~~~~s~~~d~-------------------~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~----~~~~~   97 (131)
                      ..++.+..++                   .+..+|..+++.+..++...         .+........+++    ++.++
T Consensus       242 ~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~  321 (668)
T 1kv9_A          242 DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP  321 (668)
T ss_dssp             TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC
T ss_pred             CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC
Confidence            8888877665                   38999999999988776421         2222222222443    77888


Q ss_pred             CCCcEEEEeCCCCeeeEEEe
Q psy3840          98 TDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        98 ~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .+|.++++|.++|+.+....
T Consensus       322 ~~G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          322 KNGFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             TTSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEEECCCCCEecccc
Confidence            99999999999999886543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.42  E-value=0.011  Score=39.29  Aligned_cols=101  Identities=15%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCc------------eeeccc------ccccEEEEEEcC---CCCEEEEEeCCCcE
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSL------------KSTLGQ------HKGPIFALKWNK---RGNYILSAGVDKTT   61 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~------------~~~~~~------~~~~i~~~~~~~---~~~~~~s~~~d~~i   61 (131)
                      .+|+|.+||..+ +..|.+-.+. +..            ...+.-      ...+|..+.|+|   .+..+++-..|+.|
T Consensus        73 lSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~I  151 (452)
T 3pbp_A           73 SSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTI  151 (452)
T ss_dssp             ECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCE
T ss_pred             ECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEE
Confidence            589999999986 5578887765 210            011111      246799999999   46689999999999


Q ss_pred             EEEECCCcc-eeeeee---------cCCCCeEEEEEcCCCc-EEE--EeCCCcEEEE
Q psy3840          62 IIWDAASGQ-CEQQFS---------FHSAPALDVDWQSNTS-FAS--CSTDQHIHVC  105 (131)
Q Consensus        62 ~~~d~~~~~-~~~~~~---------~~~~~v~~~~~~~~~~-~~~--~~~d~~i~i~  105 (131)
                      ++||+.... ....+.         .....+.+++|.+++. |..  .+.+|.|+-.
T Consensus       152 r~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          152 TMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            999998621 111221         1225678888888764 444  3366666544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.35  E-value=0.009  Score=36.80  Aligned_cols=104  Identities=7%  Similarity=0.003  Sum_probs=65.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC----Cceeecc-------cccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcc
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG----SLKSTLG-------QHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~----~~~~~~~-------~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      +|+|.++.|.++.......+|...+    ..+..+.       .+...+..++++| .+++++....++.+..+|.. ++
T Consensus       127 A~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~  205 (255)
T 3qqz_A          127 AYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GE  205 (255)
T ss_dssp             EEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CC
T ss_pred             EEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CC
Confidence            4677787777776655555555432    1111111       1223568999999 55666666667788889965 54


Q ss_pred             eeeeeecC---------CCCeEEEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840          71 CEQQFSFH---------SAPALDVDWQSNTSFASCSTDQHIHVCKL  107 (131)
Q Consensus        71 ~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~d~~i~i~d~  107 (131)
                      .+..+.-.         -.....|++.++|.+...+..+.++.|.-
T Consensus       206 ~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          206 VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            54444322         13678999999998766677777777653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.33  E-value=0.0036  Score=43.24  Aligned_cols=110  Identities=9%  Similarity=-0.018  Sum_probs=71.2

Q ss_pred             CCEEEEEeC-CCeEEEEcC-C-CCceeecccccc-----------cEEEEEEcCCCCE----EEEEeCCCcEEEEECCCc
Q psy3840           8 GSFLATGSY-DGYARIWTS-D-GSLKSTLGQHKG-----------PIFALKWNKRGNY----ILSAGVDKTTIIWDAASG   69 (131)
Q Consensus         8 ~~~l~~~~~-d~~i~~~~~-~-~~~~~~~~~~~~-----------~i~~~~~~~~~~~----~~s~~~d~~i~~~d~~~~   69 (131)
                      +..+++++. ++.|.-+|. . |+.+.+......           ....+++.|.+..    ++.++.|+.+..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456777777 788999998 4 777665543211           0123455443333    778888999999999999


Q ss_pred             ceeeeeecCCC----CeE-EEEEcCCCcEEEEe------CCCcEEEEeCCCCeeeEEEec
Q psy3840          70 QCEQQFSFHSA----PAL-DVDWQSNTSFASCS------TDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        70 ~~~~~~~~~~~----~v~-~~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      +.+........    .+. .... .+++++.++      .++.|+.+|.++|+.+.++..
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            98876543210    111 1111 145665554      378999999999999888764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.32  E-value=0.021  Score=40.45  Aligned_cols=107  Identities=7%  Similarity=-0.063  Sum_probs=63.2

Q ss_pred             cccCCCCEEEEEeCC-----CeEEEEcCCCCc---eeecc-cccccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCcc
Q psy3840           3 SSRNNGSFLATGSYD-----GYARIWTSDGSL---KSTLG-QHKGPIFALKWNKRGNYILSAGV---DKTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d-----~~i~~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~~s~~~---d~~i~~~d~~~~~   70 (131)
                      +|+||++.|+....+     ..|..+++.+..   ...+. ........+.|+|++++++....   ...++++|+.++.
T Consensus       227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~  306 (751)
T 2xe4_A          227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN  306 (751)
T ss_dssp             EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred             EEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence            589999888777654     246677775322   12221 22334667899999998776542   3467888987752


Q ss_pred             -ee--eee-ecCCCCeEEEEEcCCCcE-EEEeCC----CcEEEEeCCC
Q psy3840          71 -CE--QQF-SFHSAPALDVDWQSNTSF-ASCSTD----QHIHVCKLHS  109 (131)
Q Consensus        71 -~~--~~~-~~~~~~v~~~~~~~~~~~-~~~~~d----~~i~i~d~~~  109 (131)
                       ..  ..+ ........++.|+.++.+ +....+    ..|..+|+.+
T Consensus       307 ~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          307 AHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence             12  223 223345566666555554 343333    3577777764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.24  E-value=0.014  Score=38.54  Aligned_cols=105  Identities=9%  Similarity=0.094  Sum_probs=63.2

Q ss_pred             cccCCCCEEEEEeC-CC----eEEEEcCCCCce--eecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeee
Q psy3840           3 SSRNNGSFLATGSY-DG----YARIWTSDGSLK--STLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~----~i~~~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~   74 (131)
                      +++++++.|+++.. ++    .+..++..+...  ..+.. ......++++| ++.++++-..++.|..++...+.....
T Consensus       185 a~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~  263 (430)
T 3tc9_A          185 CWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL  263 (430)
T ss_dssp             EECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            35778886666554 22    233344333222  12221 22346778999 777777776788999999876654222


Q ss_pred             eec-CCCCeEEEEEcCCCc-EE-EEeCCCcEEEEeCC
Q psy3840          75 FSF-HSAPALDVDWQSNTS-FA-SCSTDQHIHVCKLH  108 (131)
Q Consensus        75 ~~~-~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~  108 (131)
                      ... .......++++|++. ++ +-...+.|..++..
T Consensus       264 ~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          264 FTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            221 223467899999987 54 44456789988765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.24  E-value=0.0025  Score=38.50  Aligned_cols=97  Identities=7%  Similarity=-0.090  Sum_probs=58.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-Cce-----eecc---cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee-
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-SLK-----STLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE-   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~~~-----~~~~---~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~-   72 (131)
                      +|+|++.+.++  .+|.+.-.+... ...     .+..   +... ..++.|.|++.+.++  .||.|+-++..+...- 
T Consensus        47 af~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~  121 (236)
T 1tl2_A           47 FLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDN  121 (236)
T ss_dssp             EECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC
T ss_pred             EECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCc
Confidence            57888886666  677766666532 110     1111   1112 478899999999888  5588887776432111 


Q ss_pred             ----eee--ecCCCCeEEEEEcCCCcEEEEeCCCcEEEE
Q psy3840          73 ----QQF--SFHSAPALDVDWQSNTSFASCSTDQHIHVC  105 (131)
Q Consensus        73 ----~~~--~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~  105 (131)
                          ...  ...=..+..+.+.|++.|.+.. |+.++-.
T Consensus       122 Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~  159 (236)
T 1tl2_A          122 WIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA  159 (236)
T ss_dssp             HHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred             eeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence                011  1111357889999999976666 7776433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.18  E-value=0.017  Score=38.22  Aligned_cols=108  Identities=11%  Similarity=0.002  Sum_probs=61.0

Q ss_pred             ccCC--CCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCcce-eeeee
Q psy3840           4 SRNN--GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD---KT-TIIWDAASGQC-EQQFS   76 (131)
Q Consensus         4 ~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d---~~-i~~~d~~~~~~-~~~~~   76 (131)
                      ++|+  ...|+.+...+.|+.++.....+..+.........+++++++.++++....   .. +...+...+.. ...+.
T Consensus       146 vd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~  225 (433)
T 4hw6_A          146 FDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC  225 (433)
T ss_dssp             ECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE
T ss_pred             EccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc
Confidence            4552  345555544478888888655555544444567899999999955544321   11 33333222211 01122


Q ss_pred             cCCCCeEEEEEcC-CCcEEEE-eCCCcEEEEeCCCCee
Q psy3840          77 FHSAPALDVDWQS-NTSFASC-STDQHIHVCKLHSDKP  112 (131)
Q Consensus        77 ~~~~~v~~~~~~~-~~~~~~~-~~d~~i~i~d~~~~~~  112 (131)
                       .......++++| ++.+..+ ..++.|+.+|..++..
T Consensus       226 -~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~  262 (433)
T 4hw6_A          226 -NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL  262 (433)
T ss_dssp             -ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred             -ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence             223456678888 6775544 4567888888876654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.13  E-value=0.014  Score=40.58  Aligned_cols=105  Identities=16%  Similarity=0.188  Sum_probs=64.2

Q ss_pred             CCCEEEEEeCCC-----------eEEEEcCCCCceeecc----cccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcc
Q psy3840           7 NGSFLATGSYDG-----------YARIWTSDGSLKSTLG----QHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQ   70 (131)
Q Consensus         7 ~~~~l~~~~~d~-----------~i~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~   70 (131)
                      ++++++.|+.+.           .+.+||........+.    .+......+++.++++.++.|+. +..+.+||+.+.+
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            777888876532           5788997633322221    12233345677889999999885 5689999987653


Q ss_pred             e--eeeeecCCCCeEEEEEcCCCc-EEEEe-CC-----CcEEEEeCCCCee
Q psy3840          71 C--EQQFSFHSAPALDVDWQSNTS-FASCS-TD-----QHIHVCKLHSDKP  112 (131)
Q Consensus        71 ~--~~~~~~~~~~v~~~~~~~~~~-~~~~~-~d-----~~i~i~d~~~~~~  112 (131)
                      -  +..+...+ .-.+....++++ ++.|+ .+     ..+.+||..+.+-
T Consensus       277 W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          277 WIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            2  22222211 123455566777 66776 33     4689999987653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.11  E-value=0.022  Score=36.49  Aligned_cols=105  Identities=6%  Similarity=0.042  Sum_probs=69.9

Q ss_pred             cCCCCEEEEEeC-------------CCeEEEEcCC----CCceeecc--ccc-----------ccEEEEEEcCCCCEEEE
Q psy3840           5 RNNGSFLATGSY-------------DGYARIWTSD----GSLKSTLG--QHK-----------GPIFALKWNKRGNYILS   54 (131)
Q Consensus         5 ~~~~~~l~~~~~-------------d~~i~~~~~~----~~~~~~~~--~~~-----------~~i~~~~~~~~~~~~~s   54 (131)
                      .+++.++++...             +..+..||+.    ++.+....  ...           .....++..++|+..++
T Consensus        74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt  153 (334)
T 2p9w_A           74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA  153 (334)
T ss_dssp             SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE
T ss_pred             CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe
Confidence            466666665431             5678889987    55544332  111           24789999999999999


Q ss_pred             EeCC-CcEEEEECCCcceeeeee------cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          55 AGVD-KTTIIWDAASGQCEQQFS------FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        55 ~~~d-~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      ++.. +.|...+.... .+..+.      ......+.|+++|++. |+.....+.+..+|+++.
T Consensus       154 ~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          154 FALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            9888 88777776543 333221      1122366899999986 666655899999998743

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.05  E-value=0.03  Score=37.20  Aligned_cols=102  Identities=14%  Similarity=0.156  Sum_probs=64.3

Q ss_pred             CCCEEEEEeCCCeEEEEcCC-CCceeecccc----cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-----------
Q psy3840           7 NGSFLATGSYDGYARIWTSD-GSLKSTLGQH----KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-----------   70 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-----------   70 (131)
                      ++..++.+ .++.||.-++. +...+.+..-    -+.+..+..+|+|.+++..+.. .+.+..+..+.           
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence            34444443 23456655654 3223332221    1246779999999999988555 68888776321           


Q ss_pred             -eeeeeec------CCCCeEEEEEcCC----CcEEEEeCCCcEEEEeCCCC
Q psy3840          71 -CEQQFSF------HSAPALDVDWQSN----TSFASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        71 -~~~~~~~------~~~~v~~~~~~~~----~~~~~~~~d~~i~i~d~~~~  110 (131)
                       ..+.+.-      ...+|..+.|+|-    +.+++-..|+.|++||+...
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence             1112221      2467999999994    33899999999999999863

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.03  E-value=0.015  Score=39.89  Aligned_cols=108  Identities=9%  Similarity=0.049  Sum_probs=69.9

Q ss_pred             CCEEEEEeC-CCeEEEEcC-C-CCceeecccccc-c----------EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840           8 GSFLATGSY-DGYARIWTS-D-GSLKSTLGQHKG-P----------IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ   73 (131)
Q Consensus         8 ~~~l~~~~~-d~~i~~~~~-~-~~~~~~~~~~~~-~----------i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~   73 (131)
                      +..+++++. ++.|..+|. . |+.+.+...... .          ...+..  .+..++.++.++.+..+|..+++.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            456777777 788999998 4 777665543211 0          011122  35677888889999999999999887


Q ss_pred             eeecCCC----CeE-EEEEcCCCcEEEEeC------CCcEEEEeCCCCeeeEEEec
Q psy3840          74 QFSFHSA----PAL-DVDWQSNTSFASCST------DQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        74 ~~~~~~~----~v~-~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .......    .+. .... .++.++.+..      ++.|+.+|.++++.+.++..
T Consensus       140 ~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            6553210    111 1111 1566655554      78999999999999887754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.0018  Score=41.57  Aligned_cols=111  Identities=11%  Similarity=0.095  Sum_probs=70.5

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccc-cccEEEEEE--cCCCCEEEEE--eCCCcEEEEECCCcceeeeeec----
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQH-KGPIFALKW--NKRGNYILSA--GVDKTTIIWDAASGQCEQQFSF----   77 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~-~~~i~~~~~--~~~~~~~~s~--~~d~~i~~~d~~~~~~~~~~~~----   77 (131)
                      +..+++++.||.|.-.|.. |+...++... ..+.....-  .+.+..++.+  ..||.+..++..+|.....+..    
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            4578889999999999976 8777776653 122222110  0112234433  5799999999988855433321    


Q ss_pred             CCCCeEE---EEE------cCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          78 HSAPALD---VDW------QSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        78 ~~~~v~~---~~~------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ...++..   ...      +.++.+++++.++.+...|+++|+.+.++..
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            1112211   000      1356688999999999999999999998864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.81  E-value=0.041  Score=34.87  Aligned_cols=112  Identities=7%  Similarity=-0.074  Sum_probs=66.9

Q ss_pred             cCCCCEEEEEe--CCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeeeeecCCC
Q psy3840           5 RNNGSFLATGS--YDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         5 ~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      .|.+..++...  ..+.|...+..|.....+. ..-.....++++|++..++.+. ..+.|..+|+..............
T Consensus       130 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~  209 (318)
T 3sov_A          130 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP  209 (318)
T ss_dssp             EGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS
T ss_pred             eCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC
Confidence            44444444444  2467777777765443332 2223457899999666555554 567899999864332222222334


Q ss_pred             CeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          81 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      ....+++..+..+.+-...+.|..++..+++.+..+
T Consensus       210 ~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          210 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             CEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            566777765444566556678999998777655554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.66  E-value=0.098  Score=37.17  Aligned_cols=103  Identities=12%  Similarity=0.072  Sum_probs=67.2

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCceeecc-----cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-----
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKSTLG-----QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-----   76 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~-----   76 (131)
                      +++.|..|+.++-+..+|........+.     .....|.++...+++.+.+... + -+..||..+++......     
T Consensus       416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~  493 (795)
T 4a2l_A          416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGT  493 (795)
T ss_dssp             TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCC
T ss_pred             CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEcccccccc
Confidence            4444777777677888887643333332     1245789999888888776654 4 58889987764322111     


Q ss_pred             -cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCee
Q psy3840          77 -FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        77 -~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  112 (131)
                       .....+.++...+++.+-.++. +.+..||..+++.
T Consensus       494 ~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          494 PVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI  529 (795)
T ss_dssp             BCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE
T ss_pred             ccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE
Confidence             1235688888888888666666 5688888776554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.62  E-value=0.067  Score=34.80  Aligned_cols=101  Identities=11%  Similarity=-0.062  Sum_probs=60.6

Q ss_pred             EEEEEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEeC-C-CcEEEEECCCcceeeeeecCCCCeEEEE
Q psy3840          10 FLATGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV-D-KTTIIWDAASGQCEQQFSFHSAPALDVD   86 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~-d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~   86 (131)
                      +.++-...+.|.+.++.+.....+. ........++++|.+..++.... . +.|..+++............-.....++
T Consensus       173 lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence            3344444567777777755433332 22345688999996665554443 4 6788888764433222222334578899


Q ss_pred             EcCC-CcE-EEEeCCCcEEEEeCCCC
Q psy3840          87 WQSN-TSF-ASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        87 ~~~~-~~~-~~~~~d~~i~i~d~~~~  110 (131)
                      ++|+ ++| ++-...+.|..+|+...
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          253 IDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             EEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            9975 555 44445678999988643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.60  E-value=0.065  Score=34.38  Aligned_cols=105  Identities=4%  Similarity=0.024  Sum_probs=67.8

Q ss_pred             ccCCCCEEEEEe-CCCeEEEEcCCCCc-eeecccc-----c--ccEEEEEE---cCCCCEEEEEe-------------CC
Q psy3840           4 SRNNGSFLATGS-YDGYARIWTSDGSL-KSTLGQH-----K--GPIFALKW---NKRGNYILSAG-------------VD   58 (131)
Q Consensus         4 ~~~~~~~l~~~~-~d~~i~~~~~~~~~-~~~~~~~-----~--~~i~~~~~---~~~~~~~~s~~-------------~d   58 (131)
                      |.+....+..++ ..++|..|+..+.. .......     .  .....+.+   .|+++++++..             .+
T Consensus        20 wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~   99 (334)
T 2p9w_A           20 YDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGA   99 (334)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSC
T ss_pred             CcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCC
Confidence            555556666655 68999999987332 2222211     1  13578999   68887777544             25


Q ss_pred             CcEEEEECC---Ccceeeeee--c-----------CCCCeEEEEEcCCCc-EEEEeCC-CcEEEEeCC
Q psy3840          59 KTTIIWDAA---SGQCEQQFS--F-----------HSAPALDVDWQSNTS-FASCSTD-QHIHVCKLH  108 (131)
Q Consensus        59 ~~i~~~d~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~-~~~~~~d-~~i~i~d~~  108 (131)
                      ..+..+|+.   +++.+....  .           .......++..++|. +++++.. +.|...+..
T Consensus       100 ~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A          100 SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             CEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence            778899998   777654433  1           112478899999987 6777776 666666554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.59  E-value=0.01  Score=40.87  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=48.5

Q ss_pred             CCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-eEEEEEcCCCc
Q psy3840          17 DGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTS   92 (131)
Q Consensus        17 d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~   92 (131)
                      +|.|..||+. ++.+.+..... +...-.....+.+++.++.|+.++.+|.++++.+..+...... ..-+.|..+++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence            5778888976 66665544321 2211111224667888999999999999999999888754322 12355656776

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.57  E-value=0.068  Score=34.26  Aligned_cols=112  Identities=9%  Similarity=-0.049  Sum_probs=66.4

Q ss_pred             ccCCCCEEEEEe-CC-CeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeeeeecCC
Q psy3840           4 SRNNGSFLATGS-YD-GYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         4 ~~~~~~~l~~~~-~d-~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +.|.+..++... .. +.|..++..+.....+.. .-.....++++|++..+..+. ..+.|..+|+........+....
T Consensus       166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~  245 (349)
T 3v64_C          166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL  245 (349)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred             EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC
Confidence            345444444433 34 678888877655444322 233568899998666555554 46789999986543322232233


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      .....+++. ++. +.+-...+.|..++..+++.+..+
T Consensus       246 ~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          246 PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            456677774 445 555556678888886666655544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.45  E-value=0.083  Score=33.86  Aligned_cols=102  Identities=11%  Similarity=-0.063  Sum_probs=61.3

Q ss_pred             CEEEEEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEe-CC-CcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           9 SFLATGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAG-VD-KTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~-~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      ++.++-...+.|.+.+..+.....+. ........++++|.+..++... .. +.|...++............-.....+
T Consensus       129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGl  208 (349)
T 3v64_C          129 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGL  208 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEE
T ss_pred             eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceE
Confidence            33344444667888887765443332 2234568899999555544444 44 778888876433222222223457889


Q ss_pred             EEcCC-CcE-EEEeCCCcEEEEeCCCC
Q psy3840          86 DWQSN-TSF-ASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        86 ~~~~~-~~~-~~~~~d~~i~i~d~~~~  110 (131)
                      +++|+ +++ ++-...+.|..+|+...
T Consensus       209 a~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          209 TIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            99985 555 44445678999998643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.42  E-value=0.093  Score=34.13  Aligned_cols=101  Identities=14%  Similarity=0.018  Sum_probs=61.5

Q ss_pred             CEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCCCCeEEEEE
Q psy3840           9 SFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW   87 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~   87 (131)
                      .+|+.+ ....|+..++.+.....+.........++|++.+..++ +-...+.|+.+++..+.....+.........+++
T Consensus        88 ~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav  166 (386)
T 3v65_B           88 PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV  166 (386)
T ss_dssp             CEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred             ceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence            344443 34568888877554444433345678999998555444 5455788999998766543333322234567888


Q ss_pred             cCC-CcE-EEEeCCCcEEEEeCCCC
Q psy3840          88 QSN-TSF-ASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        88 ~~~-~~~-~~~~~d~~i~i~d~~~~  110 (131)
                      .+. +.+ ++-...+.|.+.++...
T Consensus       167 d~~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          167 DWVHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             ETTTTEEEEEETTTTEEEECBTTSC
T ss_pred             EeCCCeEEEEcCCCCeEEEEeCCCC
Confidence            864 454 44455667888887643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.37  E-value=0.16  Score=36.16  Aligned_cols=100  Identities=12%  Similarity=0.047  Sum_probs=66.0

Q ss_pred             EEEEEeCCCeEEEEcCCCCceeecc---------cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec---
Q psy3840          10 FLATGSYDGYARIWTSDGSLKSTLG---------QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---   77 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~---   77 (131)
                      .|..|+.++-|..|+........+.         .....|.++..++++..+..|..++-+..+|..+++.. .+..   
T Consensus       369 ~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~  447 (795)
T 4a2l_A          369 NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNS  447 (795)
T ss_dssp             CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTS
T ss_pred             CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCC
Confidence            4666777767888887633332221         11356889998888884455666666899998876532 2221   


Q ss_pred             --CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840          78 --HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        78 --~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  111 (131)
                        ....|.++...+++.+..++. +.+..||.++++
T Consensus       448 ~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~  482 (795)
T 4a2l_A          448 QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS  482 (795)
T ss_dssp             CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE
T ss_pred             CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe
Confidence              234688888888888666666 558889987654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.35  E-value=0.088  Score=33.17  Aligned_cols=99  Identities=9%  Similarity=-0.086  Sum_probs=61.0

Q ss_pred             EEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCcceeeeee-cCCCCeEEE
Q psy3840          10 FLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGVD--KTTIIWDAASGQCEQQFS-FHSAPALDV   85 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~d--~~i~~~d~~~~~~~~~~~-~~~~~v~~~   85 (131)
                      +.++-...+.|.+++..++....+.. .......++++|.+..++.+...  +.|...++... ....+. ..-.....+
T Consensus        91 ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gl  169 (316)
T 1ijq_A           91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGI  169 (316)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEE
T ss_pred             EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEE
Confidence            33443456778888877655443322 23456889999966655554443  67888887533 223332 223457889


Q ss_pred             EEcCC-CcEE-EEeCCCcEEEEeCCC
Q psy3840          86 DWQSN-TSFA-SCSTDQHIHVCKLHS  109 (131)
Q Consensus        86 ~~~~~-~~~~-~~~~d~~i~i~d~~~  109 (131)
                      +++++ +++. +-...+.|..+|+..
T Consensus       170 a~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          170 TLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEeccCCEEEEEECCCCeEEEEecCC
Confidence            99986 4554 444566899999874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.35  E-value=0.11  Score=34.05  Aligned_cols=103  Identities=9%  Similarity=-0.066  Sum_probs=63.8

Q ss_pred             CCEEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCCCeEE
Q psy3840           8 GSFLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPALD   84 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~   84 (131)
                      +++.++-...+.|.+.++.+.....+.. .......++++|.+..++....  .+.|...++............-.....
T Consensus       171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~g  250 (400)
T 3p5b_L          171 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  250 (400)
T ss_dssp             TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEE
Confidence            3344444446778888887665444432 2345688999996655555443  467888887654333323333356788


Q ss_pred             EEEcCC-CcEEEE-eCCCcEEEEeCCCC
Q psy3840          85 VDWQSN-TSFASC-STDQHIHVCKLHSD  110 (131)
Q Consensus        85 ~~~~~~-~~~~~~-~~d~~i~i~d~~~~  110 (131)
                      ++++++ ++|..+ ...+.|..+|+...
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          251 ITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            999976 455444 44568999998644

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.30  E-value=0.032  Score=39.30  Aligned_cols=114  Identities=8%  Similarity=-0.029  Sum_probs=63.2

Q ss_pred             ccCCCCEEEEEeC--CCeEEEEcCCCCceeecc-cccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeeeee--c
Q psy3840           4 SRNNGSFLATGSY--DGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFS--F   77 (131)
Q Consensus         4 ~~~~~~~l~~~~~--d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~~~--~   77 (131)
                      +.|.+.+|+....  .+.|..+++.+.....+. ..-.....|+++|++. ++++-...+.|..+++........+.  .
T Consensus       503 vDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~  582 (699)
T 1n7d_A          503 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK  582 (699)
T ss_dssp             CCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS
T ss_pred             EccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC
Confidence            3444444443332  256776666654433322 1123456789998654 44555557789999986433222221  1


Q ss_pred             CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          78 HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .......+++..+..+++....+.|..+|..+++.+..+.
T Consensus       583 ~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          583 RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             SCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             cCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            1122345556555435566666789999988777666653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.21  E-value=0.12  Score=33.21  Aligned_cols=92  Identities=11%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCce--eec---ccccccEEEEEEcCC---CCEEEEEeC-C-----CcEEEEECCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLK--STL---GQHKGPIFALKWNKR---GNYILSAGV-D-----KTTIIWDAAS   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~---~~~~~s~~~-d-----~~i~~~d~~~   68 (131)
                      ++.|+|+++++ ..++.|.+++ .++..  ..+   .........++++|+   +..++.... .     ..|..++...
T Consensus        37 a~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~  114 (352)
T 2ism_A           37 AFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG  114 (352)
T ss_dssp             EECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS
T ss_pred             EEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC
Confidence            46788885555 5678999888 43321  111   112346789999998   444444333 2     5677777764


Q ss_pred             cc-----ee-eeee---cCCCCeEEEEEcCCCcEEEE
Q psy3840          69 GQ-----CE-QQFS---FHSAPALDVDWQSNTSFASC   96 (131)
Q Consensus        69 ~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~~~   96 (131)
                      +.     .+ ..+.   ........++|.|++.|..+
T Consensus       115 ~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A          115 ERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             SCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred             CCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence            31     11 1132   11123468999999885443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.20  E-value=0.052  Score=35.95  Aligned_cols=70  Identities=9%  Similarity=0.093  Sum_probs=46.5

Q ss_pred             cEEEEEEcC-CCCEEEEEeCCCcEEEEECCCcceeeeeec--CCCCeEEEEEcCCCc-EE-EEeCCCcEEEEeCC
Q psy3840          39 PIFALKWNK-RGNYILSAGVDKTTIIWDAASGQCEQQFSF--HSAPALDVDWQSNTS-FA-SCSTDQHIHVCKLH  108 (131)
Q Consensus        39 ~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~  108 (131)
                      ....++++| ++.++++-..++.|+.+|..++.....+..  .......++++|++. +. +-...+.|+.++..
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            345678899 777776766788899999887765222221  112234699999976 54 44456789997765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.17  E-value=0.028  Score=39.54  Aligned_cols=101  Identities=9%  Similarity=-0.076  Sum_probs=57.7

Q ss_pred             CEEEEEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           9 SFLATGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      +++++-...+.|.++++.+.....+.. .......++++|.+..|+.+..  .+.|..+++............-.....|
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGl  545 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  545 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCE
T ss_pred             cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEE
Confidence            333443446678888887655444432 2234567888985554444333  2677777765332211112222345779


Q ss_pred             EEcCC-CcE-EEEeCCCcEEEEeCCC
Q psy3840          86 DWQSN-TSF-ASCSTDQHIHVCKLHS  109 (131)
Q Consensus        86 ~~~~~-~~~-~~~~~d~~i~i~d~~~  109 (131)
                      +++|+ ++| ++-...+.|..+++..
T Consensus       546 avd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          546 TLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             EECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             EEeccCCEEEEEecCCCeEEEEccCC
Confidence            99986 455 4444566899999864

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.06  E-value=0.23  Score=35.21  Aligned_cols=101  Identities=10%  Similarity=0.033  Sum_probs=64.2

Q ss_pred             CEEEEEeCCCeEEEEcCCCCceeecc---cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecC-----CC
Q psy3840           9 SFLATGSYDGYARIWTSDGSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH-----SA   80 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~-----~~   80 (131)
                      ..|..|+.++-+..++........+.   .....|.++...+++.+.+...  +-+..+|..+++........     ..
T Consensus       418 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~  495 (781)
T 3v9f_A          418 GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLEN  495 (781)
T ss_dssp             SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred             CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccc
Confidence            34555666566777887533333332   1345788988888887666543  45888998776543222111     35


Q ss_pred             CeEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840          81 PALDVDWQSNTSFASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        81 ~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  111 (131)
                      .+.++...+++.+-.++.++-+..+|.++++
T Consensus       496 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          496 FVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred             eeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence            6888988888887667765567888876553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.95  E-value=0.21  Score=33.85  Aligned_cols=104  Identities=10%  Similarity=0.022  Sum_probs=62.5

Q ss_pred             ccC-CCCEEEEEe-CCCeEEEEcCCCCceeecccc----cccEEEEEE-------cCCCCEEEEEeCCC-------cEEE
Q psy3840           4 SRN-NGSFLATGS-YDGYARIWTSDGSLKSTLGQH----KGPIFALKW-------NKRGNYILSAGVDK-------TTII   63 (131)
Q Consensus         4 ~~~-~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~----~~~i~~~~~-------~~~~~~~~s~~~d~-------~i~~   63 (131)
                      ++| ++..|+++. ..+.|++.|...+.+..+..-    ......++|       ++++..++.+...+       .+.+
T Consensus       146 ~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~  225 (496)
T 3kya_A          146 FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYI  225 (496)
T ss_dssp             EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEE
T ss_pred             EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEE
Confidence            455 244444443 346788888886666554332    124789999       99998666665543       2566


Q ss_pred             EECCC-ccee-----eeeecCCCCeEEEEEcCC-CcE-EEEeCCCcEEEEeCC
Q psy3840          64 WDAAS-GQCE-----QQFSFHSAPALDVDWQSN-TSF-ASCSTDQHIHVCKLH  108 (131)
Q Consensus        64 ~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~-~~~~~d~~i~i~d~~  108 (131)
                      ++... +...     ..+.. ......++.+|+ +.| ++-..++.|+.+|+.
T Consensus       226 i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          226 IKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             EecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            65433 2221     22222 234567788995 554 455567789999987

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.88  E-value=0.19  Score=32.84  Aligned_cols=101  Identities=14%  Similarity=-0.011  Sum_probs=62.4

Q ss_pred             EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCc----ceeeeeecCCCCeEE
Q psy3840          10 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASG----QCEQQFSFHSAPALD   84 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~~~----~~~~~~~~~~~~v~~   84 (131)
                      +|+.+ ....|+..++.+.....+......+..++|++....++.. ...+.|+.+++...    .....+.........
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            44444 3567888888755444444445678899999865555544 45788888888652    222223323346778


Q ss_pred             EEEcC-CCcE-EEEeCCCcEEEEeCCCCe
Q psy3840          85 VDWQS-NTSF-ASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        85 ~~~~~-~~~~-~~~~~d~~i~i~d~~~~~  111 (131)
                      +++.+ .+.| .+-...+.|.+.++....
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~  192 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVK  192 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCS
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCc
Confidence            88887 4554 444556788888887543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.88  E-value=0.17  Score=32.08  Aligned_cols=101  Identities=12%  Similarity=-0.011  Sum_probs=61.1

Q ss_pred             CEEEEEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840           9 SFLATGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      ++..+-...+.|.+++..+.....+. ........++++|.+..++....  .+.|...++............-.....+
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence            33344444667888887765444332 33345688999996555555543  5778888875433222222223456889


Q ss_pred             EEcCC-CcEE-EEeCCCcEEEEeCCC
Q psy3840          86 DWQSN-TSFA-SCSTDQHIHVCKLHS  109 (131)
Q Consensus        86 ~~~~~-~~~~-~~~~d~~i~i~d~~~  109 (131)
                      +++++ +++. +-...+.|..+|+..
T Consensus       172 avd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          172 TLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEeccCCEEEEEECCCCEEEEEcCCC
Confidence            99985 5554 444567899999864

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.80  E-value=0.12  Score=31.32  Aligned_cols=97  Identities=9%  Similarity=-0.071  Sum_probs=57.0

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCce------eecccc--cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee------
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLK------STLGQH--KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE------   72 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~------~~~~~~--~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~------   72 (131)
                      ...+|+...+| +++.=.......      .+..+.  =..+..++|+|++.+.+.  .+|.++-.+..+....      
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34566777777 666555442211      111122  136779999999997777  7777776666442211      


Q ss_pred             eeee--cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840          73 QQFS--FHSAPALDVDWQSNTSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        73 ~~~~--~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~  108 (131)
                      ..+-  +-. ...++.|.|++.|... .|+.|+-++-.
T Consensus        80 t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP  115 (236)
T 1tl2_A           80 KKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPP  115 (236)
T ss_dssp             EEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCC
T ss_pred             cEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCC
Confidence            1111  111 1467889999986666 66888877753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=95.78  E-value=0.17  Score=31.52  Aligned_cols=73  Identities=7%  Similarity=-0.012  Sum_probs=50.4

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeC--CC-cEEEEeCCCCee
Q psy3840          38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST--DQ-HIHVCKLHSDKP  112 (131)
Q Consensus        38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~-~i~i~d~~~~~~  112 (131)
                      .....++++++++++++...++.|..+|.... ....+. ....+..+++.++++++.+..  ++ .|..+|..+++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            45678999999997777767889999997653 333332 234678899999988554442  22 477777777654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.64  E-value=0.39  Score=34.55  Aligned_cols=104  Identities=10%  Similarity=-0.075  Sum_probs=64.7

Q ss_pred             CCCEEE-EEeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCCCe
Q psy3840           7 NGSFLA-TGSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         7 ~~~~l~-~~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      .++.|+ +-...+.|.+.++.+.....+.. .......|+++|....|+....  .+.|...++........+...-...
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P  560 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP  560 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence            343444 44446788888888766555432 3345789999997555555543  3678888876544333333333567


Q ss_pred             EEEEEcCC-CcEEEE-eCCCcEEEEeCCCC
Q psy3840          83 LDVDWQSN-TSFASC-STDQHIHVCKLHSD  110 (131)
Q Consensus        83 ~~~~~~~~-~~~~~~-~~d~~i~i~d~~~~  110 (131)
                      ..|++++. ++|+.+ ...+.|..+++...
T Consensus       561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            88999875 555444 44567888888644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.63  E-value=0.21  Score=31.44  Aligned_cols=100  Identities=14%  Similarity=-0.016  Sum_probs=59.1

Q ss_pred             EEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEE-EEEeCCCcEEEEECCC----cceeeeeecCCCCeEE
Q psy3840          10 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAAS----GQCEQQFSFHSAPALD   84 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~s~~~d~~i~~~d~~~----~~~~~~~~~~~~~v~~   84 (131)
                      +|+.+. ...|+..++.+.....+.........++|++.+..+ .+-..++.|..+++..    ......+.........
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            344443 456888888754333333334567899999865544 4555578899999875    2222222222234577


Q ss_pred             EEEcCC-CcE-EEEeCCCcEEEEeCCCC
Q psy3840          85 VDWQSN-TSF-ASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        85 ~~~~~~-~~~-~~~~~d~~i~i~d~~~~  110 (131)
                      +++++. +.+ ++-...+.|.++++...
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            888864 554 45456678999988744

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.58  E-value=0.31  Score=33.05  Aligned_cols=103  Identities=5%  Similarity=0.013  Sum_probs=61.0

Q ss_pred             ccCCCCEEEEEeCCC-------eEEEEcCCC--Cce-----eecccccccEEEEEEcC-CCCEEEEEeCCCcEEEEECC-
Q psy3840           4 SRNNGSFLATGSYDG-------YARIWTSDG--SLK-----STLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIWDAA-   67 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~-------~i~~~~~~~--~~~-----~~~~~~~~~i~~~~~~~-~~~~~~s~~~d~~i~~~d~~-   67 (131)
                      ++++++.++++...+       .|.+++...  ...     ..+... .....++++| ++.++++-..++.++.+|+. 
T Consensus       200 ~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~  278 (496)
T 3kya_A          200 YADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVD  278 (496)
T ss_dssp             TBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred             cCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence            488888666665543       255554332  221     122222 2345778899 56666667678889999987 


Q ss_pred             ------Ccce-----------eeee-ec-CCCCeEEEEEcCCCc-EEEE-eCCCcEEEEeC
Q psy3840          68 ------SGQC-----------EQQF-SF-HSAPALDVDWQSNTS-FASC-STDQHIHVCKL  107 (131)
Q Consensus        68 ------~~~~-----------~~~~-~~-~~~~v~~~~~~~~~~-~~~~-~~d~~i~i~d~  107 (131)
                            ++..           ...+ .. .......++++|++. +..+ ...+.|+.++.
T Consensus       279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             HHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence                  4443           1121 11 223467899999987 4444 45668888654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.49  E-value=0.27  Score=31.67  Aligned_cols=93  Identities=11%  Similarity=0.091  Sum_probs=51.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC-ceeec---ccccccEEEEEEcCC----CCEEEEEeC---C----CcEEEEECC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS-LKSTL---GQHKGPIFALKWNKR----GNYILSAGV---D----KTTIIWDAA   67 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~-~~~~~---~~~~~~i~~~~~~~~----~~~~~s~~~---d----~~i~~~d~~   67 (131)
                      ++.|+++++++ ..++.|.+++..++ .+..+   .........++++|+    +.++++-..   +    ..|..++..
T Consensus        35 a~~pdG~l~V~-e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~  113 (354)
T 3a9g_A           35 APLGGGRYLVT-ERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLD  113 (354)
T ss_dssp             EEEETTEEEEE-ETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEEC
T ss_pred             EEcCCCeEEEE-eCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEEC
Confidence            36778875444 56799998885554 11111   112345789999997    444444332   3    556667765


Q ss_pred             Cc-------cee-eeeec-CCCCeEEEEEcCCCcEEEE
Q psy3840          68 SG-------QCE-QQFSF-HSAPALDVDWQSNTSFASC   96 (131)
Q Consensus        68 ~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~~~~   96 (131)
                      ..       +.+ ..+.. .......+.|.|++.|..+
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A          114 GSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             SSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            43       111 11221 1123467999999885443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.42  E-value=0.48  Score=34.11  Aligned_cols=99  Identities=8%  Similarity=-0.092  Sum_probs=57.4

Q ss_pred             EEEeCCCeEEEEcCCCC-----ceeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEE
Q psy3840          12 ATGSYDGYARIWTSDGS-----LKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV   85 (131)
Q Consensus        12 ~~~~~d~~i~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~   85 (131)
                      ++-...+.|+.+++.+.     ....+.........|++++.+. ++++-...+.|.+.++........+.........|
T Consensus       440 ~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gI  519 (791)
T 3m0c_C          440 WSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI  519 (791)
T ss_dssp             EEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEE
T ss_pred             EeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceE
Confidence            33334556776666542     1222222234456789988665 44455557889999987554333333334567899


Q ss_pred             EEcCC-CcEEEEeC--CCcEEEEeCCCC
Q psy3840          86 DWQSN-TSFASCST--DQHIHVCKLHSD  110 (131)
Q Consensus        86 ~~~~~-~~~~~~~~--d~~i~i~d~~~~  110 (131)
                      +++|. +.|+....  .+.|...++...
T Consensus       520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          520 VVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             EEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            99986 55544443  267888887643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.21  E-value=0.49  Score=33.04  Aligned_cols=112  Identities=9%  Similarity=-0.044  Sum_probs=67.8

Q ss_pred             cCCCCEEEEEe--CCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeeeeecCCCC
Q psy3840           5 RNNGSFLATGS--YDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         5 ~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .|....|+...  ..+.|...++.|.....+...-.....+++++++..++.+. ..+.|...|+..... ..+......
T Consensus       131 dp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~  209 (628)
T 4a0p_A          131 DPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPH  209 (628)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSC
T ss_pred             ccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCC
Confidence            44334444433  24566667776655444433345668899999766666555 467899999865433 333333345


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ...+++..+..+.+-...+.|...|..+++....+.
T Consensus       210 P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          210 PFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEe
Confidence            567777654334555557789999987776554443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.12  E-value=0.17  Score=35.25  Aligned_cols=92  Identities=11%  Similarity=0.029  Sum_probs=51.4

Q ss_pred             CCCEEEEEeCCC-----------eEEEEcCCCCceeecc--c-cccc-EEEEEEcCCCCEEEEEeCC-----------Cc
Q psy3840           7 NGSFLATGSYDG-----------YARIWTSDGSLKSTLG--Q-HKGP-IFALKWNKRGNYILSAGVD-----------KT   60 (131)
Q Consensus         7 ~~~~l~~~~~d~-----------~i~~~~~~~~~~~~~~--~-~~~~-i~~~~~~~~~~~~~s~~~d-----------~~   60 (131)
                      ++++++.|+.++           .+.+||..........  . .... -.++...|+++.++.|+.+           ..
T Consensus       410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~  489 (656)
T 1k3i_A          410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT  489 (656)
T ss_dssp             TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred             CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence            567777777532           5777887633332221  1 1111 2344567899999998754           46


Q ss_pred             EEEEECCCcce--eeeeecCCCCeEEEEEcCCCc-EEEEeC
Q psy3840          61 TIIWDAASGQC--EQQFSFHSAPALDVDWQSNTS-FASCST   98 (131)
Q Consensus        61 i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~~~~~   98 (131)
                      +.+||..+.+-  +..+...+.........|+++ ++.|+.
T Consensus       490 v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          490 PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            88999876532  222222222223344568888 566663

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.12  E-value=0.36  Score=31.01  Aligned_cols=94  Identities=10%  Similarity=0.017  Sum_probs=50.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCce---eec----ccccccEEEEEEcCC----CCEEEEEeC-------CCcEEEE
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLK---STL----GQHKGPIFALKWNKR----GNYILSAGV-------DKTTIIW   64 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~---~~~----~~~~~~i~~~~~~~~----~~~~~s~~~-------d~~i~~~   64 (131)
                      ++.|+++.++++...|.|++++..++..   ..+    ....+....++++|+    +..+++-..       ...|.-+
T Consensus        24 ~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~  103 (353)
T 2g8s_A           24 AFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYG  103 (353)
T ss_dssp             EECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEE
T ss_pred             EEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEE
Confidence            4678888344555689999988654321   111    112345688999995    444444322       2245556


Q ss_pred             ECCCc--c--eee----eeec---CCCCeEEEEEcCCCcEEEE
Q psy3840          65 DAASG--Q--CEQ----QFSF---HSAPALDVDWQSNTSFASC   96 (131)
Q Consensus        65 d~~~~--~--~~~----~~~~---~~~~v~~~~~~~~~~~~~~   96 (131)
                      ++...  .  ...    .+..   .......+.|.|++.|..+
T Consensus       104 ~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  146 (353)
T 2g8s_A          104 RLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIA  146 (353)
T ss_dssp             EECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEE
T ss_pred             EECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEE
Confidence            65432  1  111    1111   1122457999999985433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.97  E-value=0.64  Score=33.05  Aligned_cols=100  Identities=10%  Similarity=0.013  Sum_probs=63.2

Q ss_pred             CEEEEEeCCCeEEEEcCCCCceeec----ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee---cCCCC
Q psy3840           9 SFLATGSYDGYARIWTSDGSLKSTL----GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS---FHSAP   81 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~---~~~~~   81 (131)
                      ..|..|+.++-|..|+........+    ......|.++...+++.+.+ |..++-+..+|..+++.. .+.   .....
T Consensus       374 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~  451 (781)
T 3v9f_A          374 GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLD  451 (781)
T ss_dssp             SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCC
T ss_pred             CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCe
Confidence            3455666555577777653222221    11235688998888888766 455556888888766432 222   12357


Q ss_pred             eEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840          82 ALDVDWQSNTSFASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        82 v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  111 (131)
                      |.++...+++.+-.++. +.+..+|..+++
T Consensus       452 v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          452 VRVFYEDKNKKIWIGTH-AGVFVIDLASKK  480 (781)
T ss_dssp             EEEEEECTTSEEEEEET-TEEEEEESSSSS
T ss_pred             EEEEEECCCCCEEEEEC-CceEEEeCCCCe
Confidence            88888888888666666 568889887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.79  E-value=0.67  Score=32.39  Aligned_cols=107  Identities=4%  Similarity=-0.173  Sum_probs=62.8

Q ss_pred             ccCCCCEEEE-EeCCCeEEEEcCCCCceeeccc-ccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           4 SRNNGSFLAT-GSYDGYARIWTSDGSLKSTLGQ-HKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         4 ~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      |++....|+. -..++.|..+++.+.....+.. .......+++++.+. ++.+-...+.|.+.++............-.
T Consensus        44 ~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~  123 (628)
T 4a0p_A           44 FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLD  123 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCC
T ss_pred             EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCC
Confidence            4454444444 3446778877777544333222 223456888887555 445545578899999865433222223345


Q ss_pred             CeEEEEEcCC-CcEEEEeC--CCcEEEEeCCCC
Q psy3840          81 PALDVDWQSN-TSFASCST--DQHIHVCKLHSD  110 (131)
Q Consensus        81 ~v~~~~~~~~-~~~~~~~~--d~~i~i~d~~~~  110 (131)
                      ....++++|. +.+.....  .+.|...++...
T Consensus       124 ~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~  156 (628)
T 4a0p_A          124 SPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS  156 (628)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence            6789999985 66544442  457777777643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.55  E-value=0.77  Score=32.02  Aligned_cols=106  Identities=13%  Similarity=-0.015  Sum_probs=62.8

Q ss_pred             cCCCCEE-EEEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCC
Q psy3840           5 RNNGSFL-ATGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         5 ~~~~~~l-~~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      .+.++.| .+-...+.|.+.+..|.....+. ..-.....++++|....++....  .+.|...++............-.
T Consensus        92 D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~  171 (619)
T 3s94_A           92 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY  171 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred             EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC
Confidence            3434444 44445778999888876554443 33344678899996555554443  45666666654332222222334


Q ss_pred             CeEEEEEcCC-CcEE-EEeCCCcEEEEeCCCC
Q psy3840          81 PALDVDWQSN-TSFA-SCSTDQHIHVCKLHSD  110 (131)
Q Consensus        81 ~v~~~~~~~~-~~~~-~~~~d~~i~i~d~~~~  110 (131)
                      ....++++++ ++|. +-...+.|..+|+...
T Consensus       172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             CCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            5788999986 5554 4445567888888643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.39  E-value=0.55  Score=29.71  Aligned_cols=70  Identities=10%  Similarity=0.157  Sum_probs=43.6

Q ss_pred             cccccEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEe
Q psy3840          35 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDA--ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCK  106 (131)
Q Consensus        35 ~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d  106 (131)
                      .....+..+.+.+++..++.+...+..+..|-  .+.+.+.  ......+..+.+.+++.+...+.++.++..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~  231 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSD  231 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEec
Confidence            34457888999998888776654443444442  2222221  1234567888888888866666777776653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.93  E-value=0.64  Score=28.72  Aligned_cols=101  Identities=10%  Similarity=0.085  Sum_probs=51.1

Q ss_pred             CCCEEEEEeCC-----CeEEEEcCCCCceeecccccc---cEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcce--
Q psy3840           7 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKG---PIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQC--   71 (131)
Q Consensus         7 ~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~~--   71 (131)
                      ++.+++.|+.+     ..+..||+.......+.....   ....+.+  ++..++.|+.+     ..+.+||+.+.+=  
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            45566666543     347778876433332221111   1112222  56667777653     4688899876532  


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK  111 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~  111 (131)
                      +..+.........+..  +++ ++.|+.+     ..+.+||+++.+
T Consensus       237 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          237 VTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            2222211111122222  455 5666654     357899998764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=93.88  E-value=0.72  Score=29.17  Aligned_cols=99  Identities=9%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeec-ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec----C
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF----H   78 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~----~   78 (131)
                      +.+++.+++++...+..+-.|-.+.....+ ......+..+.+.+++..++. +.+|.++..+...++....+..    .
T Consensus       170 ~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~  248 (327)
T 2xbg_A          170 RSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRN  248 (327)
T ss_dssp             ECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSC
T ss_pred             EcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccC
Confidence            345666666654433333444323322222 223456788889998876654 4567777664332433222221    1


Q ss_pred             CCCeEEEEEcCCCcEEEEeCCCcEE
Q psy3840          79 SAPALDVDWQSNTSFASCSTDQHIH  103 (131)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~d~~i~  103 (131)
                      ...+..+.+.+++.++.++.++.+.
T Consensus       249 ~~~~~~v~~~~~~~~~~~g~~g~i~  273 (327)
T 2xbg_A          249 SVGFLDLAYRTPNEVWLAGGAGALL  273 (327)
T ss_dssp             CSCEEEEEESSSSCEEEEESTTCEE
T ss_pred             CcceEEEEecCCCEEEEEeCCCeEE
Confidence            2357888898887766666677663

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.74  E-value=0.58  Score=28.94  Aligned_cols=63  Identities=16%  Similarity=0.151  Sum_probs=34.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCcc--eeeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCee
Q psy3840          48 RGNYILSAGVD-----KTTIIWDAASGQ--CEQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDKP  112 (131)
Q Consensus        48 ~~~~~~s~~~d-----~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~~  112 (131)
                      ++..++.|+.+     ..+..||+.+.+  .+..+....... .+... +++ ++.|+.+     ..+.+||+.+.+-
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEEEE-CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            56677777654     368889987653  222222111111 12222 455 5666654     3489999987643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.51  E-value=1.3  Score=30.93  Aligned_cols=83  Identities=10%  Similarity=0.083  Sum_probs=57.6

Q ss_pred             cEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcce-------------eeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEE
Q psy3840          39 PIFALKWNKRGNYILSAGV-DKTTIIWDAASGQC-------------EQQFSFHSAPALDVDWQSNTS-FASCSTDQHIH  103 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~  103 (131)
                      ....+..+|+|++++.++. +.++.++|.++-..             .... .-.......+|.++|. +.+.--|.+|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeecceEE
Confidence            3456788999999888776 88999999875211             1111 2234577889999987 56666899999


Q ss_pred             EEeCCCC----------eeeEEEecccce
Q psy3840         104 VCKLHSD----------KPVKSFEGHTRV  122 (131)
Q Consensus       104 i~d~~~~----------~~~~~~~~~~~~  122 (131)
                      -|++...          ..+..+.-|.++
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp  431 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP  431 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCC
Confidence            9998642          355556555544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.13  E-value=1.2  Score=31.03  Aligned_cols=64  Identities=14%  Similarity=0.255  Sum_probs=45.5

Q ss_pred             ccCCCCEEEEEeC-CCeEEEEcCC-------CCc-------eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy3840           4 SRNNGSFLATGSY-DGYARIWTSD-------GSL-------KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         4 ~~~~~~~l~~~~~-d~~i~~~~~~-------~~~-------~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~   68 (131)
                      .+|||+++++++. +.++.++++.       ++.       ...... .-.....+|+++|..+.+---|..+.-|++..
T Consensus       330 vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          330 TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence            4799999988877 8899999875       221       112221 22346779999996566666799999999865

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.74  E-value=1.3  Score=28.78  Aligned_cols=107  Identities=10%  Similarity=0.091  Sum_probs=69.4

Q ss_pred             EEEEEeCCCeEEEEcCC--------CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC-----Ccceeeeee
Q psy3840          10 FLATGSYDGYARIWTSD--------GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA-----SGQCEQQFS   76 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~-----~~~~~~~~~   76 (131)
                      ++++...+|.+..|++.        .+.++++.. .+.+..+..++....++.+..+.-|..++.+     +++.+..+.
T Consensus       145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred             EEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence            57777788999988763        233444443 3567788889988889999888667667754     233444332


Q ss_pred             c--CCCCeEEEEE--cCCC--cE-EEEeCCCcEEEEeCC-CCeeeEEEe
Q psy3840          77 F--HSAPALDVDW--QSNT--SF-ASCSTDQHIHVCKLH-SDKPVKSFE  117 (131)
Q Consensus        77 ~--~~~~v~~~~~--~~~~--~~-~~~~~d~~i~i~d~~-~~~~~~~~~  117 (131)
                      .  ....+..++.  .+++  .+ +++-.+....+||.+ +.+.+..+.
T Consensus       224 ~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          224 GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            1  2235677776  4443  34 444456789999996 566677664

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.25  E-value=0.73  Score=33.87  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      .+.++...++.. +++-+.|+++++|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            356666666654 7889999999999999999988764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.97  E-value=1.8  Score=26.73  Aligned_cols=102  Identities=18%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             CCCEEEEEeCCC-----eEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeCC-------CcEEEEECCCcc--
Q psy3840           7 NGSFLATGSYDG-----YARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVD-------KTTIIWDAASGQ--   70 (131)
Q Consensus         7 ~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~d-------~~i~~~d~~~~~--   70 (131)
                      ++.+++.|+.++     .+..||........+.....+.  .++.. -++..++.|+.+       ..+..||+.+.+  
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            456666666543     4667787643333222111111  11111 256666666542       357788987653  


Q ss_pred             eeeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840          71 CEQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK  111 (131)
Q Consensus        71 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~  111 (131)
                      .+..+....... ++... +++ ++.|+.+     ..+.+||+++.+
T Consensus       187 ~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          187 YIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             ECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            222222211111 22222 445 5666653     468899988764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.92  E-value=0.66  Score=34.10  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      .+.++...++..++++-+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4567777788889999999999999999999877654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=90.81  E-value=2.7  Score=28.51  Aligned_cols=73  Identities=7%  Similarity=0.076  Sum_probs=52.4

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCC-cEEEEeCCCcEEEEeCCC
Q psy3840          37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHS  109 (131)
Q Consensus        37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~i~d~~~  109 (131)
                      .+.-.++..++....+..-.+-|.+++||+.++.++...+-....+..-+...+. -++.-...|.|.--.++.
T Consensus       258 ~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            3455678888888889999999999999999999987777666666554444442 265556666665554443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.71  E-value=1.9  Score=26.64  Aligned_cols=101  Identities=8%  Similarity=-0.014  Sum_probs=50.0

Q ss_pred             CCCEEEEEeCC----CeEEEEcCCCCceeeccccc---ccEEEEEEcCCCCEEEEEeCC------CcEEEEECCCcc--e
Q psy3840           7 NGSFLATGSYD----GYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVD------KTTIIWDAASGQ--C   71 (131)
Q Consensus         7 ~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~s~~~d------~~i~~~d~~~~~--~   71 (131)
                      ++.+++.|+.+    ..+..||........+....   .....+.+  ++..++.|+.+      ..+..||+.+.+  .
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            45566666644    45777887643332222111   11112222  56667777654      458888987653  2


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEEEeC---------CCcEEEEeCCCCe
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FASCST---------DQHIHVCKLHSDK  111 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~---------d~~i~i~d~~~~~  111 (131)
                      +..+........ +... +++ ++.|+.         ...+.+||+.+.+
T Consensus       133 ~~~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          133 KPSMLTQRCSHG-MVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET  180 (306)
T ss_dssp             ECCCSSCCBSCE-EEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred             CCCCcCCcceeE-EEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence            222221111112 2222 455 455543         3458899988764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.71  E-value=2  Score=26.78  Aligned_cols=103  Identities=13%  Similarity=0.104  Sum_probs=50.3

Q ss_pred             CCCEEEEEeC-C-----CeEEEEcCCCCceeeccccccc--EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCcc--e
Q psy3840           7 NGSFLATGSY-D-----GYARIWTSDGSLKSTLGQHKGP--IFALKWNKRGNYILSAGVDK-----TTIIWDAASGQ--C   71 (131)
Q Consensus         7 ~~~~l~~~~~-d-----~~i~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~s~~~d~-----~i~~~d~~~~~--~   71 (131)
                      ++.+++.|+. +     ..+..||........+.....+  -.++. .-+++.++.|+.++     .+..||+.+.+  .
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            4556666665 2     3577788764333322221111  01111 12567777776644     47788887653  2


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEEEeCC--------------CcEEEEeCCCCee
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FASCSTD--------------QHIHVCKLHSDKP  112 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d--------------~~i~i~d~~~~~~  112 (131)
                      +..+.........+ .. +++ ++.|+.+              ..+.+||+++.+-
T Consensus       227 ~~~~p~~r~~~~~~-~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          227 FEAFPQERSSLSLV-SL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             ECCCSSCCBSCEEE-EE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             CCCCCCcccceeEE-EE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            22222111112222 22 445 5666543              2477899887753

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.69  E-value=2.2  Score=27.39  Aligned_cols=71  Identities=11%  Similarity=0.158  Sum_probs=44.1

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-eeeeee---cCCCCeEEEEEcCC----CcEEEEeC----C----Cc
Q psy3840          38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-CEQQFS---FHSAPALDVDWQSN----TSFASCST----D----QH  101 (131)
Q Consensus        38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~----d----~~  101 (131)
                      .....|+|.|++++++ +..++.|++++ ..++ .+..+.   ........++++|+    +.+..+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            3568899999998544 45669999887 3444 222211   12345789999997    55443322    2    56


Q ss_pred             EEEEeCCCC
Q psy3840         102 IHVCKLHSD  110 (131)
Q Consensus       102 i~i~d~~~~  110 (131)
                      |..|+....
T Consensus       107 v~r~~~~~~  115 (354)
T 3a9g_A          107 VIRGRLDGS  115 (354)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEECCC
Confidence            777776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.16  E-value=5.7  Score=31.22  Aligned_cols=99  Identities=10%  Similarity=0.085  Sum_probs=58.7

Q ss_pred             CCeEEEEcCCCCceeecccccccEEEEEEc--CCCC-EEEEEeC---CCcEEEEECCCc---cee------eeeec---C
Q psy3840          17 DGYARIWTSDGSLKSTLGQHKGPIFALKWN--KRGN-YILSAGV---DKTTIIWDAASG---QCE------QQFSF---H   78 (131)
Q Consensus        17 d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~~~s~~~---d~~i~~~d~~~~---~~~------~~~~~---~   78 (131)
                      .|.+.+|+...+....+.||-+....+...  +... .++-+..   .+.+++.++...   ...      ..+..   .
T Consensus       178 ~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~  257 (1630)
T 1xi4_A          178 VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  257 (1630)
T ss_pred             cceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccc
Confidence            477889998877767777877665555443  2222 3332222   367888887432   110      01110   1


Q ss_pred             CCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEE
Q psy3840          79 SAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKS  115 (131)
Q Consensus        79 ~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~  115 (131)
                      .+-..++..++. |.+..-+.-|.+++||+.++.++..
T Consensus       258 ~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             cCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            122345666665 5566778889999999999877654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=89.93  E-value=2.8  Score=27.22  Aligned_cols=90  Identities=7%  Similarity=0.010  Sum_probs=53.5

Q ss_pred             CCeEEEEcCC--CCcee---ecccc-cccEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCcceee
Q psy3840          17 DGYARIWTSD--GSLKS---TLGQH-KGPIFALKWNKRGNYILSAGV-----------------DKTTIIWDAASGQCEQ   73 (131)
Q Consensus        17 d~~i~~~~~~--~~~~~---~~~~~-~~~i~~~~~~~~~~~~~s~~~-----------------d~~i~~~d~~~~~~~~   73 (131)
                      +..|.+|++.  +....   .+.+. -.....+.+.++|..+++...                 .+.+..+|.  ++. .
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-R  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-E
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-E
Confidence            3467777654  33222   22221 134678889999988777641                 234444554  332 2


Q ss_pred             eeecCCCCeEEEEEcCCCc-E-EEEeCCCcEEEEeCCC
Q psy3840          74 QFSFHSAPALDVDWQSNTS-F-ASCSTDQHIHVCKLHS  109 (131)
Q Consensus        74 ~~~~~~~~v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~  109 (131)
                      .+...-...+.++|+|+++ + ++-+..+.|+.|++..
T Consensus       215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            2222234678999999986 4 5555678899999863

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.02  E-value=2.8  Score=26.03  Aligned_cols=101  Identities=9%  Similarity=0.054  Sum_probs=49.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEcCCCCceeeccccc---ccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc--e
Q psy3840           7 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQ--C   71 (131)
Q Consensus         7 ~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~--~   71 (131)
                      ++.+++.|+.+     ..+..||........+....   .....+.+  ++..++.|+.+     ..+..||+.+.+  .
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            45555665533     24677777633332222111   11112222  56666666654     457888887653  1


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK  111 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~  111 (131)
                      +..+........ +... +++ ++.|+.+     ..+.+||+.+.+
T Consensus       199 ~~~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          199 ITAMNTIRSGAG-VCVL-HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CCCCSSCCBSCE-EEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCCccccce-EEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            222221111122 2222 455 5666554     468999988764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.73  E-value=4.1  Score=27.65  Aligned_cols=106  Identities=9%  Similarity=0.061  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCCceeecccccccEEEEEEcCCC---CEEEEEeC---CCcEEEEECCCc---ce-----eee-ee---cC
Q psy3840          17 DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRG---NYILSAGV---DKTTIIWDAASG---QC-----EQQ-FS---FH   78 (131)
Q Consensus        17 d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~s~~~---d~~i~~~d~~~~---~~-----~~~-~~---~~   78 (131)
                      .|.+.+|..+.+.-..+.+|-+....+...-+.   ..++-+..   .+.+++.++...   ..     ... +.   ..
T Consensus       178 ~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~  257 (494)
T 1bpo_A          178 VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ  257 (494)
T ss_dssp             EEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST
T ss_pred             cceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc
Confidence            367889999888888888887766665544322   23343433   278888888432   11     111 11   11


Q ss_pred             CCCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          79 SAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        79 ~~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      .+-.-++..++. +.+..-+.-|.+++||+.++.++..-+.-...
T Consensus       258 ~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~  302 (494)
T 1bpo_A          258 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET  302 (494)
T ss_dssp             TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCc
Confidence            233456777776 55777788999999999999988765543333

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.64  E-value=0.69  Score=34.64  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +.+++..++.. +++-+.|++++||++.+++++.+..
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34445555555 7789999999999999999988864

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.56  E-value=2.9  Score=25.70  Aligned_cols=101  Identities=15%  Similarity=0.190  Sum_probs=49.6

Q ss_pred             CCCEEEEEeCC-----CeEEEEcCCCCceeecccccc---cEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcce--
Q psy3840           7 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKG---PIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQC--   71 (131)
Q Consensus         7 ~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~~--   71 (131)
                      ++.+++.|+.+     ..+.+||........+.....   ....+.  .++..++.|+.+     ..+..||+.+.+=  
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            45556666543     247778876433322221111   111122  256666776654     4578889876532  


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK  111 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~  111 (131)
                      +..+........ +... +++ ++.|+.+     ..+.+||+++.+
T Consensus       190 ~~~~p~~r~~~~-~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          190 VTPMATKRSGAG-VALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             ECCCSSCCBSCE-EEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCcccccce-EEEE-CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            222221111112 2222 445 5666653     468999998764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.49  E-value=4.1  Score=27.28  Aligned_cols=91  Identities=9%  Similarity=0.058  Sum_probs=48.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCce--eeccc------ccccEEEEEEcCC---CCEE-EEEeC------------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLK--STLGQ------HKGPIFALKWNKR---GNYI-LSAGV------------   57 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~--~~~~~------~~~~i~~~~~~~~---~~~~-~s~~~------------   57 (131)
                      +|.|+|+++++-...+.|..++.. +...  ..+..      ..+....|+|+|+   +..+ ++-+.            
T Consensus        33 a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~  112 (454)
T 1cru_A           33 LWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPN  112 (454)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCE
T ss_pred             EEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccccc
Confidence            467888877765444578888754 3321  11211      2456779999995   4444 43322            


Q ss_pred             CCcEEEEECCCc-------ceee-eeec-CCCCeEEEEEcCCCcE
Q psy3840          58 DKTTIIWDAASG-------QCEQ-QFSF-HSAPALDVDWQSNTSF   93 (131)
Q Consensus        58 d~~i~~~d~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~~~   93 (131)
                      ...|.-++....       +.+. .+.. .......+.|.|++.|
T Consensus       113 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~L  157 (454)
T 1cru_A          113 QTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKI  157 (454)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCE
T ss_pred             ccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeE
Confidence            124444544321       1111 1221 1234788999999884

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=88.20  E-value=1.9  Score=30.88  Aligned_cols=30  Identities=10%  Similarity=0.215  Sum_probs=25.7

Q ss_pred             CCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          89 SNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        89 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      ++..+++-+.|+++++|++++++++.+..-
T Consensus       230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            355588999999999999999999888765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=88.15  E-value=3.8  Score=26.56  Aligned_cols=69  Identities=9%  Similarity=0.174  Sum_probs=42.1

Q ss_pred             ccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-cce--eeeeecCCCCeEEEEEcC-CCcE-EEEeCC-CcEEEEeC
Q psy3840          38 GPIFALKWNKRGNYILSAG-VDKTTIIWDAAS-GQC--EQQFSFHSAPALDVDWQS-NTSF-ASCSTD-QHIHVCKL  107 (131)
Q Consensus        38 ~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~-~~~~~d-~~i~i~d~  107 (131)
                      .....++|+|+++.++.+. ..+.|..|++.. ++.  ...+. .....-.++..+ +|.+ +++..+ +.|..|+.
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            4567899999998777665 478899999863 322  12232 234556788888 4774 434333 23433443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.00  E-value=3.4  Score=25.72  Aligned_cols=102  Identities=6%  Similarity=-0.010  Sum_probs=49.0

Q ss_pred             CCCEEEEEeCC--------CeEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeC-C-----CcEEEEECCCcc
Q psy3840           7 NGSFLATGSYD--------GYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGV-D-----KTTIIWDAASGQ   70 (131)
Q Consensus         7 ~~~~l~~~~~d--------~~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~-d-----~~i~~~d~~~~~   70 (131)
                      ++.+++.|+.+        ..+..||........+.....+.  .++. ..+++.++.|+. +     ..+..||+.+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            34555666532        34777887643332222111110  1111 135666666665 2     458888987653


Q ss_pred             --eeeeeecCCCCeEEEEEcCCCc-EEEEeCCC-----cEEEEeCCCCe
Q psy3840          71 --CEQQFSFHSAPALDVDWQSNTS-FASCSTDQ-----HIHVCKLHSDK  111 (131)
Q Consensus        71 --~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~-----~i~i~d~~~~~  111 (131)
                        .+..+.......... .. +++ ++.|+.++     .+.+||+.+.+
T Consensus       177 W~~~~~~p~~r~~~~~~-~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          177 WKELAPMQTARSLFGAT-VH-DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEECCCCSSCCBSCEEE-EE-TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EEECCCCCCchhceEEE-EE-CCEEEEEeccCCCCccceEEEEECCCCe
Confidence              222222211111222 22 445 56666543     47889987763

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=87.58  E-value=4  Score=26.14  Aligned_cols=69  Identities=10%  Similarity=0.113  Sum_probs=43.8

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce--eeeee---cCCCCeEEEEEcCC----CcE-EEEeCC-----CcE
Q psy3840          38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC--EQQFS---FHSAPALDVDWQSN----TSF-ASCSTD-----QHI  102 (131)
Q Consensus        38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~--~~~~~---~~~~~v~~~~~~~~----~~~-~~~~~d-----~~i  102 (131)
                      .....++|.|+++++++ ..++.|+.++  .++.  +..+.   ........++++|+    +.+ ++....     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34579999999985554 5679999988  3332  22111   12346789999997    454 333322     567


Q ss_pred             EEEeCCC
Q psy3840         103 HVCKLHS  109 (131)
Q Consensus       103 ~i~d~~~  109 (131)
                      ..++...
T Consensus       108 ~r~~~~~  114 (352)
T 2ism_A          108 VRLRHLG  114 (352)
T ss_dssp             EEEEECS
T ss_pred             EEEEeCC
Confidence            7787764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.52  E-value=4.1  Score=26.25  Aligned_cols=67  Identities=12%  Similarity=0.077  Sum_probs=44.1

Q ss_pred             CEEEEEeCCCcEEEEECCCcceeeeeecCC-CCeEEEEEc--C-CCcEE-EE-eCCCcEEEEeCCCCeeeEEE
Q psy3840          50 NYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALDVDWQ--S-NTSFA-SC-STDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        50 ~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~--~-~~~~~-~~-~~d~~i~i~d~~~~~~~~~~  116 (131)
                      ..++.++.||.+.-+|..+|+....+.... .++....-.  + ++.++ .. ..||.++.++..+|.....+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~   83 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL   83 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence            367888999999999999999888876541 222221110  1 23433 33 57999999998887554443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=87.24  E-value=5.9  Score=27.71  Aligned_cols=105  Identities=4%  Similarity=-0.125  Sum_probs=58.9

Q ss_pred             ccCCCCEEEEEe-CCCeEEEEcCCCCc--eeecccccccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           4 SRNNGSFLATGS-YDGYARIWTSDGSL--KSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         4 ~~~~~~~l~~~~-~d~~i~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +++.++.|+... ..+.|..++..+..  ...+.........+++++.+. ++.+-...+.|.+.++............-
T Consensus        47 ~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l  126 (619)
T 3s94_A           47 FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL  126 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred             EEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC
Confidence            344444454443 35667777776442  122222224678899999555 44455567889999987544322222333


Q ss_pred             CCeEEEEEcCC-CcEEEEeC--CCcEEEEeCC
Q psy3840          80 APALDVDWQSN-TSFASCST--DQHIHVCKLH  108 (131)
Q Consensus        80 ~~v~~~~~~~~-~~~~~~~~--d~~i~i~d~~  108 (131)
                      .....++++|. +.+.....  .+.|...++.
T Consensus       127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d  158 (619)
T 3s94_A          127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  158 (619)
T ss_dssp             SCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence            45678999886 55544443  3566666665

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.56  E-value=0.74  Score=34.50  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee
Q psy3840          41 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus        41 ~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      .+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            34455667889999999999999999999876653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=86.31  E-value=4.5  Score=25.45  Aligned_cols=100  Identities=9%  Similarity=0.055  Sum_probs=53.2

Q ss_pred             ccCCCCEEEEEeCC--------------CeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEe--C--CCcEEEEE
Q psy3840           4 SRNNGSFLATGSYD--------------GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG--V--DKTTIIWD   65 (131)
Q Consensus         4 ~~~~~~~l~~~~~d--------------~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~--~--d~~i~~~d   65 (131)
                      ++++++.|+-....              ..|+..++.+.....+....    ...+++++..++-..  .  ...|+..+
T Consensus        60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~  135 (302)
T 3s25_A           60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIR  135 (302)
T ss_dssp             EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred             EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence            56777777776543              34666666655443333221    225677788777655  3  34455556


Q ss_pred             CCCcceeeeeecCCCCeEEEEEcCCCc-EE-EEeCCCcEEEEeCCCCee
Q psy3840          66 AASGQCEQQFSFHSAPALDVDWQSNTS-FA-SCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        66 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~d~~i~i~d~~~~~~  112 (131)
                      +... ....+..+..    ..++++++ |. +......|+.-++..+..
T Consensus       136 ~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~  179 (302)
T 3s25_A          136 IDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE  179 (302)
T ss_dssp             TTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred             CCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence            5533 3333433322    23445544 43 333356788878776543

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=85.58  E-value=2.6  Score=30.22  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=27.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840          40 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus        40 i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      |.++.+  +..++++-+.|.++|+|++.+++++....
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence            454443  47899999999999999999998776654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=85.57  E-value=4.8  Score=25.06  Aligned_cols=104  Identities=15%  Similarity=0.218  Sum_probs=50.1

Q ss_pred             CCCEEEEEeC------CCeEEEEcCCCCceeeccccccc--EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc--e
Q psy3840           7 NGSFLATGSY------DGYARIWTSDGSLKSTLGQHKGP--IFALKWNKRGNYILSAGVD-----KTTIIWDAASGQ--C   71 (131)
Q Consensus         7 ~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~--~   71 (131)
                      ++.+++.|+.      ...+..||........+.....+  -.++.. -++..++.|+.+     ..+.+||+.+.+  .
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  236 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV  236 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence            4556666653      12477888764333322211111  011221 256677776643     246678887653  2


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEEEeCC--------------CcEEEEeCCCCeee
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FASCSTD--------------QHIHVCKLHSDKPV  113 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d--------------~~i~i~d~~~~~~~  113 (131)
                      +..+....... ++... +++ ++.|+.+              ..+.+||+++.+-.
T Consensus       237 ~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  291 (318)
T 2woz_A          237 MTEFPQERSSI-SLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA  291 (318)
T ss_dssp             CCCCSSCCBSC-EEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred             CCCCCCcccce-EEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence            22222211111 22222 445 5666543              45889999887543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=85.56  E-value=4.7  Score=24.98  Aligned_cols=102  Identities=10%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             CCCEEEEEeCC-----CeEEEEcCCCCceeeccccc---ccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCcc--e
Q psy3840           7 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVD-----KTTIIWDAASGQ--C   71 (131)
Q Consensus         7 ~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~s~~~d-----~~i~~~d~~~~~--~   71 (131)
                      ++.+++.|+.+     ..+..||+.......+....   .....+.+  ++..++.|+.+     ..+..||+.+.+  .
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  245 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  245 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence            34555666543     34777887643333222111   11122222  56677777654     468889987653  2


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCee
Q psy3840          72 EQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDKP  112 (131)
Q Consensus        72 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~~  112 (131)
                      +..+....... ++... +++ ++.|+.+     ..+.+||+++.+-
T Consensus       246 ~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          246 VAPMKHRRSAL-GITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             CCCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCCCCCCccce-EEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            22222111111 22222 445 5666643     4588999987653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=85.47  E-value=7.9  Score=27.49  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=42.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCC
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~  110 (131)
                      .|.++...+++..+-.+.. +-+..+|..+++...........|.++...+++.+-.|+. +-+.+++..++
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~  261 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTT  261 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTS
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCC
Confidence            4788887776664333433 3477788776543211111223577887777888666664 45778887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=84.97  E-value=5  Score=24.75  Aligned_cols=100  Identities=5%  Similarity=-0.056  Sum_probs=51.2

Q ss_pred             CCEEEEEeCC--CeEEEEcCCCCceeeccccc---ccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCcc--eeeeee
Q psy3840           8 GSFLATGSYD--GYARIWTSDGSLKSTLGQHK---GPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQ--CEQQFS   76 (131)
Q Consensus         8 ~~~l~~~~~d--~~i~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~s~~~d----~~i~~~d~~~~~--~~~~~~   76 (131)
                      +.+++.|+.+  ..+..||........+....   .....+.  .++..++.|+.+    ..+..||+.+.+  .+..+.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3455666653  46888887644333332111   1111222  256666777654    567888987753  222222


Q ss_pred             cCCCCeEEEEEcCCCc-EEEEeCC------CcEEEEeCCCCe
Q psy3840          77 FHSAPALDVDWQSNTS-FASCSTD------QHIHVCKLHSDK  111 (131)
Q Consensus        77 ~~~~~v~~~~~~~~~~-~~~~~~d------~~i~i~d~~~~~  111 (131)
                      ...........  +++ ++.|+.+      ..+.+||+.+.+
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            21111122222  455 5666654      458899988764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=84.87  E-value=5.2  Score=24.88  Aligned_cols=102  Identities=9%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             CCCEEEEEeCC-------CeEEEEcCCCCceeecccccccE--EEEEEcCCCCEEEEEeC------CCcEEEEECCCcc-
Q psy3840           7 NGSFLATGSYD-------GYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGV------DKTTIIWDAASGQ-   70 (131)
Q Consensus         7 ~~~~l~~~~~d-------~~i~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~s~~~------d~~i~~~d~~~~~-   70 (131)
                      ++.+++.|+.+       ..+.+||........+.....+.  .++.. .++..++.|+.      -..+..||+.+.+ 
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            45566666653       24667777643333222211111  11111 35666666653      2358889987653 


Q ss_pred             -eeeeeecCCCCeEEEEEcCCCc-EEEEeCC-----CcEEEEeCCCCe
Q psy3840          71 -CEQQFSFHSAPALDVDWQSNTS-FASCSTD-----QHIHVCKLHSDK  111 (131)
Q Consensus        71 -~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d-----~~i~i~d~~~~~  111 (131)
                       .+..+....... ++... +++ ++.|+.+     ..+.+||+.+.+
T Consensus       188 ~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          188 KDLAPMKTPRSMF-GVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEECCCSSCCBSC-EEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EECCCCCCCcccc-eEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence             222222111111 22222 445 5666543     347788887653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.23  E-value=7.5  Score=26.19  Aligned_cols=91  Identities=12%  Similarity=0.203  Sum_probs=50.3

Q ss_pred             cccCCCC-EEEEEeCCCeEEEEcCCCCc----eeecc---------cccccEEEEEEcCC----CCEEEEEeC--C----
Q psy3840           3 SSRNNGS-FLATGSYDGYARIWTSDGSL----KSTLG---------QHKGPIFALKWNKR----GNYILSAGV--D----   58 (131)
Q Consensus         3 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~----~~~~~---------~~~~~i~~~~~~~~----~~~~~s~~~--d----   58 (131)
                      +|.|++. +++++...|.|++++..+..    +..+.         ...+....|+++|+    +..+++-+.  +    
T Consensus        20 a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~   99 (463)
T 2wg3_C           20 LHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAI   99 (463)
T ss_dssp             ECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCS
T ss_pred             EECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCccc
Confidence            4678885 56666789999999765331    11111         11356788999996    444443322  1    


Q ss_pred             ------CcEEEEECCCc----------ceeeeee--cCCCCeEEEEEcCCCcE
Q psy3840          59 ------KTTIIWDAASG----------QCEQQFS--FHSAPALDVDWQSNTSF   93 (131)
Q Consensus        59 ------~~i~~~d~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~   93 (131)
                            ..|.-|.+..+          +.+..+.  ........|.|.||+.|
T Consensus       100 ~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~L  152 (463)
T 2wg3_C          100 GPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFL  152 (463)
T ss_dssp             SSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCE
T ss_pred             CCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcE
Confidence                  13333554321          1222222  12234678999999984

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=84.08  E-value=6.4  Score=25.24  Aligned_cols=52  Identities=15%  Similarity=0.095  Sum_probs=33.3

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce---eeee----ecCCCCeEEEEEcCC
Q psy3840          38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC---EQQF----SFHSAPALDVDWQSN   90 (131)
Q Consensus        38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~---~~~~----~~~~~~v~~~~~~~~   90 (131)
                      ...+.|+|.|+++.++.+...+.|++++.. +..   +..+    .........++++|+
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence            346899999999834455577999998853 322   1111    112235688999995

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=83.96  E-value=12  Score=28.44  Aligned_cols=98  Identities=8%  Similarity=-0.067  Sum_probs=56.7

Q ss_pred             CEEEEEeCCCeEEEEcCCCCceeec--ccccccEEEEEEcCC------CCEEEEEeC-CCcEEEEECCCcceeeeeec-C
Q psy3840           9 SFLATGSYDGYARIWTSDGSLKSTL--GQHKGPIFALKWNKR------GNYILSAGV-DKTTIIWDAASGQCEQQFSF-H   78 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~~~~~~~~--~~~~~~i~~~~~~~~------~~~~~s~~~-d~~i~~~d~~~~~~~~~~~~-~   78 (131)
                      .+++.+. ++.+.++.+....+...  ......|.|+++.|.      +..++.|.+ |++++++.+...+.+....- .
T Consensus       524 ~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~  602 (1158)
T 3ei3_A          524 SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG  602 (1158)
T ss_dssp             SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS
T ss_pred             CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC
Confidence            4555554 56666665542111111  123467999998763      368899987 99999999987655433221 1


Q ss_pred             CCCeEEEEEcC-CCc--EEEEeCCCcEEEEeC
Q psy3840          79 SAPALDVDWQS-NTS--FASCSTDQHIHVCKL  107 (131)
Q Consensus        79 ~~~v~~~~~~~-~~~--~~~~~~d~~i~i~d~  107 (131)
                      .....++.... ++.  +..|-.||.+.-+.+
T Consensus       603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          603 EIIPRSILMTTFESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred             CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence            12344444321 222  677888887644433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=82.70  E-value=8.6  Score=25.74  Aligned_cols=53  Identities=15%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee--eeeec------CCCCeEEEEEcCC
Q psy3840          38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFSF------HSAPALDVDWQSN   90 (131)
Q Consensus        38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~--~~~~~------~~~~v~~~~~~~~   90 (131)
                      ...+.|+|.|+++++++-...+.|+.++..+++..  ..+..      .......++++|+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            35579999999997776544457888876555432  22221      1345678999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 2e-14
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 3   SSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 61
            S   G FL +GS D   ++W  S G    TL  H   +  + ++  G +ILS   DKT 
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271

Query: 62  IIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHV 104
            +WD  + +C +  + H      +D+ ++     + S DQ + V
Sbjct: 272 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 1e-10
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 23/151 (15%)

Query: 1   MQSSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWN------------- 46
           M     +G+ +A+ S D   R+W  +    K+ L +H+  +  + W              
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 47  -------KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCST 98
                  K G ++LS   DKT  +WD ++G C      H      V + S   F  SC+ 
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267

Query: 99  DQHIHVCKLHSDKPVKSFEGHT-RVYYLAMD 128
           D+ + V    + + +K+   H   V  L   
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 2e-10
 Identities = 15/88 (17%), Positives = 33/88 (37%)

Query: 21  RIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 80
           + W      K  L  H+ P+  + ++   + ++SA  D T  +WD  +G  E+    H+ 
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60

Query: 81  PALDVDWQSNTSFASCSTDQHIHVCKLH 108
              D+ +  +    +  +          
Sbjct: 61  SVQDISFDHSGKLLASCSADMTIKLWDF 88

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 7   NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
            G F+ + + D   R+W   +     TL  H+  + +L ++K   Y+++  VD+T  +W+
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 2e-07
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 7   NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             S + + S D   ++W    G  + TL  H   +  + ++  G  + S   D T  +WD
Sbjct: 28  VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87

Query: 66  AASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
               +C +    H      V    N     S S D+ I + ++ +   VK+F GH     
Sbjct: 88  FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 147

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 2e-07
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 22/142 (15%)

Query: 1   MQSSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK 59
             S   NG  + + S D   ++W    G    T   H+  +  ++ N+ G  I S   D+
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165

Query: 60  TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS---------------------FASCST 98
           T  +W  A+ +C+ +   H      + W   +S                       S S 
Sbjct: 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225

Query: 99  DQHIHVCKLHSDKPVKSFEGHT 120
           D+ I +  + +   + +  GH 
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHD 247

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 1e-11
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 7   NGSFLATGSYDGYARI---WTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII 63
           NG+  ATGS D   R+         +  +       I ++ ++K G  +L+   D    +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 64  WDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 104
           WDA         + H      +    +    A+ S D  + +
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 1e-10
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 5/132 (3%)

Query: 1   MQSSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK 59
             S   +     +G+ D  A++W   +G  + T   H+  I A+ +   GN   +   D 
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248

Query: 60  TTII--WDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSF 116
           T  +    A                  V +  +     +   D + +V            
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 117 EGHT-RVYYLAM 127
            GH  RV  L +
Sbjct: 309 AGHDNRVSCLGV 320

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.4 bits (129), Expect = 2e-10
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 6   NNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
            +G  L  G  D    +W          L  H   +  L     G  + +   D    IW
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

Query: 65  D 65
           +
Sbjct: 340 N 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 6e-07
 Identities = 16/92 (17%), Positives = 32/92 (34%)

Query: 29  LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 88
            + TL  H   I+A+ W      ++SA  D   IIWD+ +          S+  +   + 
Sbjct: 47  TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

Query: 89  SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
            + ++ +C    +I        +         
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 35  QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-F 93
            H G + +L         +S   D +  +WD   G C Q F+ H +    + +  N + F
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241

Query: 94  ASCSTDQHIHVCKLH 108
           A+ S D    +  L 
Sbjct: 242 ATGSDDATCRLFDLR 256

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.9 bits (130), Expect = 2e-10
 Identities = 12/121 (9%), Positives = 33/121 (27%), Gaps = 3/121 (2%)

Query: 7   NGSFLATGSYDGYARIW---TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII 63
           + + +A    +    I+    +       L +H G +  + W    N I++ G D+   +
Sbjct: 18  DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 77

Query: 64  WDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVY 123
           W       +               +   +    +      V  +   +    +     + 
Sbjct: 78  WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 137

Query: 124 Y 124
            
Sbjct: 138 K 138

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 3e-07
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 36  HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--HSAPALDVDWQSNTS- 92
              PI    WNK    I     +    I++ +  +  Q      H+     VDW  +++ 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 93  FASCSTDQHIHVCKLH 108
             +C TD++ +V  L 
Sbjct: 66  IVTCGTDRNAYVWTLK 81

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 6e-10
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 6   NNGSFLATGSYDGYARIWTSDG-------------SLKSTLGQHKGPIFALKWNKRGNYI 52
            +G  + +GS D   ++W                 + + T   HK  + ++   +   YI
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323

Query: 53  LSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-------ASCSTDQHIHVC 105
           LS   D+  + WD  SG        H    + V   + +S        A+ S D    + 
Sbjct: 324 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

Query: 106 KL 107
           K 
Sbjct: 384 KY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 7e-10
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 21/141 (14%)

Query: 1   MQSSRNNGSFLATGSYDGYARIWTSDG--------SLKSTLGQHKGPIFALKWNKRGNYI 52
           +  S  +G ++A GS D   R+W S+         S   +   HK  ++++ + + G  +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269

Query: 53  LSAGVDKTTIIWDAASGQ------------CEQQFSFHSAPALDVDWQSNTSF-ASCSTD 99
           +S  +D++  +W+  +              CE  +  H    L V    N  +  S S D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 100 QHIHVCKLHSDKPVKSFEGHT 120
           + +      S  P+   +GH 
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHR 350

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 6e-06
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 10  FLATGSYDGYARIWTS------DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII 63
                  + Y  ++        D  L  +L  H   +  +K++  G Y+ + G +KTT +
Sbjct: 30  DALKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLAT-GCNKTTQV 87

Query: 64  WDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD 110
           +  + G    + S  SA   D +  +  + +S S+D +I       D
Sbjct: 88  YRVSDGSLVARLSDDSAANKDPENLN--TSSSPSSDLYIRSVCFSPD 132

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (117), Expect = 9e-09
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 27  GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDV 85
           GS+      H   I AL  +  G  + SA  +     WD ++G   + F   H+     +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 86  DWQSNTSFASCSTDQHIHVCKLHSDK 111
              S     + S D H+ V       
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 33.4 bits (74), Expect = 0.004
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 2/115 (1%)

Query: 7   NGSFLATGSYDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
           +G  L +   +G+   W  ++  S +     H   I  +K   +G+    +  D   ++ 
Sbjct: 23  DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP 82

Query: 65  DAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119
              SG    +   +   +  +    +          + H+      K  +    +
Sbjct: 83  AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 137

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-08
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
            G +  +   D     W +         +    + +   +    YI++   DK   +++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 5e-07
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 35  QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSF 93
            H+  + +LK+   G + +S G D     W    G    Q    S+  L  D   +    
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYI 321

Query: 94  ASCSTDQHIHVCKL 107
            + S D+   V ++
Sbjct: 322 VTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 7/126 (5%), Positives = 24/126 (19%), Gaps = 6/126 (4%)

Query: 4   SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII 63
           + +          D          + +     H   + A+  +    ++ + G      +
Sbjct: 18  TADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKV 76

Query: 64  WDAASGQCEQ-----QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG 118
           WD +    +                      +        +         +    +    
Sbjct: 77  WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136

Query: 119 HTRVYY 124
            T    
Sbjct: 137 LTSSAP 142

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 7e-08
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 30  KSTLGQHKGPIF-ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 88
           ++TL  H   +   L++    NY+++   DK   ++D+ + +   Q S H      + + 
Sbjct: 5   RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62

Query: 89  SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
                 S STD+ + V  +        FEGH     
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-07
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 7   NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
             +++ TG+ D   R++ + +      L  H G ++ALK+   G  ++S   D+T  +WD
Sbjct: 22  EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWD 80

Query: 66  AASGQCEQQFSFHSAPALDVDWQSNTSF---ASCSTDQHIHVCKLHSDKPVKSFEGHTRV 122
              G C   F  H++    +D     +     + S D  +HV KL  +  V         
Sbjct: 81  IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 140

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-05
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 35  QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSF 93
            H   + A+      + IL +G +    I++  SG+         +     V+++  T  
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLV 338

Query: 94  ASCSTDQHIHV 104
           A+   D    +
Sbjct: 339 AAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.7 bits (75), Expect = 0.003
 Identities = 7/65 (10%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 3   SSRNNGSFLATGSYDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKT 60
           +   + + L +GS +    I+   S   + + + +    I+++ +  +   + +   D  
Sbjct: 289 TFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQ 346

Query: 61  TIIWD 65
           + +  
Sbjct: 347 SFLEI 351

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 1e-07
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 1/101 (0%)

Query: 24  TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 83
             +      L  H   +        GN I+S   D T  +W A +G+C +    H+    
Sbjct: 3   RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61

Query: 84  DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY 124
               + N   +  +            +     +   + V  
Sbjct: 62  SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 102

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 6e-06
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 4/115 (3%)

Query: 7   NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
            G+ + +GS D   ++W    G    TL  H G +++ +         S          +
Sbjct: 26  CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85

Query: 66  AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 120
                      +     +           S S D  + V  + + + +    GH 
Sbjct: 86  ---TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-05
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 7   NGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
           +G  + +GS D   R+W  + G+   TL  H+     ++     N ++S   D T  IWD
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWD 243

Query: 66  AASGQCEQQFSFHSAPALDVDWQS--NTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119
             +GQC Q     +     V           + S D  + +  L + + +++    
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 7/109 (6%)

Query: 7   NGSFLATGSYDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 64
             + L +G+ D   +IW   +   L++  G +K            N+++++  D T  +W
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

Query: 65  DAASGQCEQQFSF-----HSAPALDVDWQSNTSFASCSTDQHIHVCKLH 108
           D  +G+  +                +   +     +  +       KL 
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.002
 Identities = 20/112 (17%), Positives = 54/112 (48%), Gaps = 4/112 (3%)

Query: 9   SFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 67
             + +G+YD   ++W     +   TL  H   +++L+++  G +++S  +D +  +WD  
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVE 205

Query: 68  SGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 119
           +G C    + H +    ++ + N    S + D  + +  + + + +++ +G 
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGP 256

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 4e-06
 Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 3/73 (4%)

Query: 36  HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HSAPALDVDWQSNTS 92
            K  I  +K     + +L    D +  ++                +  P L  ++  NT 
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 93  FASCSTDQHIHVC 105
                      + 
Sbjct: 70  LQIYVGTVQGEIL 82

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 1e-04
 Identities = 16/132 (12%), Positives = 39/132 (29%), Gaps = 17/132 (12%)

Query: 1   MQSSRNNGSFLATGSYDGYARIWTSDGSLK----------------STLGQHKGPIFALK 44
           +          A  S DG   +   D                            P+ +++
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258

Query: 45  WNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIH 103
           ++ R  ++ +AG D     W+  + +  + F+ F+    + +    N    + S D    
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKT 318

Query: 104 VCKLHSDKPVKS 115
              +     + +
Sbjct: 319 NAAIDQTIELNA 330

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 4/103 (3%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKS----TLGQHKGPIFALKWNKRGNYILSAGVDKTTI 62
           + S L   S+DG   ++  D   K+       ++K P+    +    +  +  G  +  I
Sbjct: 22  SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81

Query: 63  IWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 105
           +     G    Q   ++   L +                  + 
Sbjct: 82  LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 6e-06
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 45  WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP----ALDVDWQSNTSFASCSTDQ 100
                    + G D T  +WD  + +C Q+++          + V    N    S S D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 101 HIHVCKL 107
            ++  +L
Sbjct: 319 TLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 0.001
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 4/69 (5%)

Query: 1   MQSSRNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWN---KRGNYILSAG 56
              S  +    AT   D   R+W  +           K  +   +          I+S  
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 57  VDKTTIIWD 65
           +D T   ++
Sbjct: 316 LDGTLNFYE 324

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 6e-06
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 31  STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN 90
               +    ++ L+++     I+S   D T  IWD  + +C++  + H+   L + +   
Sbjct: 9   HCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66

Query: 91  TSFASCSTDQHIHVC 105
                 S        
Sbjct: 67  VIITGSSDSTVRVWD 81

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 2e-04
 Identities = 17/107 (15%), Positives = 28/107 (26%), Gaps = 11/107 (10%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
               + +GS D   R+W  +                         I+S   D    +WD 
Sbjct: 187 RDRLVVSGSSDNTIRLWDIE-CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 245

Query: 67  ASG---------QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 104
            +           C +    HS     + +       S S D  I +
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)

Query: 10  FLATGSYDGYARIW----------TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDK 59
            + +G+YDG  ++W           +      TL +H G +F L+++     I+S+  D 
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDD 287

Query: 60  TTIIWD 65
           T +IWD
Sbjct: 288 TILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 6e-04
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 7  NGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWN 46
          +   + +G  D   +IW  +    K  L  H G +  L+++
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 14/125 (11%)

Query: 15  SYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 73
           S D   ++W TS      TL  HK  I  L++      ++S   D T  +WD   G C +
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR 212

Query: 74  QFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS---------DKPVKSFEGHT-RVY 123
               H           N    S + D  I V  L +            +++   H+ RV+
Sbjct: 213 VLEGHEELV-RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 271

Query: 124 YLAMD 128
            L  D
Sbjct: 272 RLQFD 276

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 9e-06
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 1   MQSSRNNGSFLATGSYDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD 58
                     +ATGS D    I+       +   L  HK  +  L W    + ++S+G D
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGAD 278

Query: 59  KTTIIWD 65
                W+
Sbjct: 279 ACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (81), Expect = 6e-04
 Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 35  QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS-GQCEQQFSFHSAPALDVDWQSNTSF 93
                  A +     + + +  +D    I+      +  +  + H     ++ W++ ++ 
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL 272

Query: 94  ASCSTDQHIHV 104
            S   D  I  
Sbjct: 273 VSSGADACIKR 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (77), Expect = 0.002
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 32  TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 91
           T+  H   I AL  N     ++S   D   + W ++S   +     HS   + +D     
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQD-----HSNLIVSLDNSKAQ 58

Query: 92  SFASCSTDQHIHVCKLH 108
            ++S S D  + V  + 
Sbjct: 59  EYSSISWDDTLKVNGIT 75

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 1e-05
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 35  QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA---PALDVDWQSNT 91
            H G +F L W+  G  I SA  DKT  IW+ A+ + E+     +      L + W +  
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQ 294

Query: 92  SFASCSTDQHIHV 104
           +  S S +  I+ 
Sbjct: 295 ALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 6e-05
 Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 1   MQSSRNNGSFLATGSYDGYARIW-TSDGSLKSTL-GQHKGPIFALKWNKRGNYILSAGVD 58
             +   +G+ +A+ S D   +IW  +   ++ T+    +     L        ++S   +
Sbjct: 243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 302

Query: 59  KTTIIWD 65
                 +
Sbjct: 303 GFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.0 bits (81), Expect = 5e-04
 Identities = 12/102 (11%), Positives = 23/102 (22%)

Query: 7   NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 66
            G  +   +      +     +      +H       K +  G Y  S  V     IWD 
Sbjct: 28  AGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT 87

Query: 67  ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 108
                  + +         D   ++     +          H
Sbjct: 88  TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 129

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.8 bits (91), Expect = 3e-05
 Identities = 6/76 (7%), Positives = 19/76 (25%), Gaps = 3/76 (3%)

Query: 6   NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
              ++       G    +         + + K  +  L+ +     ++    D     + 
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTR---KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342

Query: 66  AASGQCEQQFSFHSAP 81
               + E+       P
Sbjct: 343 LEKPEDERTVETDKRP 358

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 5e-05
 Identities = 6/76 (7%), Positives = 21/76 (27%), Gaps = 1/76 (1%)

Query: 6   NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 65
                   G  +  A+       L           + + ++K+G+ +   G      +++
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTY-YCVAFDKKGDKLYLGGTFNDLAVFN 319

Query: 66  AASGQCEQQFSFHSAP 81
             + +  +        
Sbjct: 320 PDTLEKVKNIKLPGGD 335

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 7e-05
 Identities = 14/139 (10%), Positives = 34/139 (24%), Gaps = 30/139 (21%)

Query: 7   NGSFLATGSYDGYARIW-TSDGSLKSTLGQ------HKGPIFAL-------KWNKRGNYI 52
             SF  + S DGY ++W       ++   +      HK  +  +       +       +
Sbjct: 23  CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82

Query: 53  LSAGVDKTTIIWDAASGQCEQQFSFHSAPAL----------------DVDWQSNTSFASC 96
            +       + +        ++  F     L                  D   +    + 
Sbjct: 83  ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 142

Query: 97  STDQHIHVCKLHSDKPVKS 115
                 ++ K H      +
Sbjct: 143 DVKGTTYIWKFHPFADESN 161

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 7e-04
 Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 34/141 (24%)

Query: 2   QSSRNNGSFLATGSYDGYARIWTSDGSLKS-----------TLGQHKGPIFALKWNKRGN 50
           +        +AT S+ G    +      ++                K   +ALKW    +
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 51  -----YILSAGVDKTTIIWDA-ASGQCEQQFSFHSAPALD-----------------VDW 87
                 +++  V  TT IW            + + +P L+                 VD 
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 88  QSNTSFASCSTDQHIHVCKLH 108
                 A+   +  + + +L 
Sbjct: 193 SERGLIATGFNNGTVQISELS 213

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 8e-04
 Identities = 12/61 (19%), Positives = 20/61 (32%)

Query: 21  RIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 80
            + T           H   + +L +N  G  + SAG D     WD  + +     + H  
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332

Query: 81  P 81
            
Sbjct: 333 D 333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 5/69 (7%), Positives = 20/69 (28%), Gaps = 1/69 (1%)

Query: 19  YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH 78
                    +    +       +++  +  G+ +   G       +DA + + + Q    
Sbjct: 262 LESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320

Query: 79  SAPALDVDW 87
              ++ +  
Sbjct: 321 GNASMSLAS 329

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.9
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.88
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.88
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.85
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.85
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.84
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.84
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.83
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.82
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.81
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.8
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.79
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.71
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.6
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.6
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.6
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.57
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.49
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.48
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.47
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.4
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.33
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.26
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.18
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.11
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.11
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.03
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.93
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.85
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.41
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.37
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.37
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.34
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.3
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.19
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.14
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.13
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.79
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.78
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.73
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.63
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.19
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.18
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.99
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.99
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.87
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.77
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.76
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.63
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.93
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.92
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.19
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.13
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.9
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.33
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.01
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.58
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.71
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.18
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.79
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.45
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.46
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.42
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.58
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	87.22
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.21
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	82.68
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	82.07
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	81.35

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.5e-27  Score=151.77  Aligned_cols=121  Identities=14%  Similarity=0.229  Sum_probs=103.1

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCce------eecccccccEEEEEEcCCCCEEEEEeCCCc---EEEEECCCccee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLK------STLGQHKGPIFALKWNKRGNYILSAGVDKT---TIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~------~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~---i~~~d~~~~~~~   72 (131)
                      +|+|++ +|++|+.|++|++||+. ++.+      ..+.+|..+|.+++|+|+++++++++.|++   +++||+++++.+
T Consensus       191 ~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~  269 (393)
T d1sq9a_         191 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI  269 (393)
T ss_dssp             EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceee
Confidence            367776 88999999999999987 4433      344578999999999999999999998875   899999998877


Q ss_pred             eeee-------------cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEE
Q psy3840          73 QQFS-------------FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYY  124 (131)
Q Consensus        73 ~~~~-------------~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  124 (131)
                      ..+.             +|...|++++|+|+++ |++++.|+.|++||+++++++.++.+|...+.
T Consensus       270 ~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         270 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             eeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence            6653             6888999999999987 89999999999999999999999999987663

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=9.7e-25  Score=136.21  Aligned_cols=118  Identities=25%  Similarity=0.437  Sum_probs=103.8

Q ss_pred             ccCCCCE-EEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-----
Q psy3840           4 SRNNGSF-LATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-----   76 (131)
Q Consensus         4 ~~~~~~~-l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~-----   76 (131)
                      |+|++++ +++|+.|+.|++||++ ++.......|..+|.++.++|+++++++++.|+.+++||++++.....+.     
T Consensus       154 ~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~  233 (311)
T d1nr0a1         154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK  233 (311)
T ss_dssp             ECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred             ccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence            6888875 7889999999999988 66777788899999999999999999999999999999999887765553     


Q ss_pred             --cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          77 --FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        77 --~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                        +|...|.+++|+|++. +++++.|+.|++||+++++++.++..|..
T Consensus       234 ~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~  281 (311)
T d1nr0a1         234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  281 (311)
T ss_dssp             SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             cccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC
Confidence              4667899999999977 89999999999999999999998876643

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=6.9e-24  Score=132.31  Aligned_cols=124  Identities=20%  Similarity=0.372  Sum_probs=108.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CC--ceeecccccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeec
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GS--LKSTLGQHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~--~~~~~~~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~   77 (131)
                      +|+|++++|++|+.||+|++||+. +.  ....+..|.++|.+++|+|+++.+++++.  +..+++|++++++....+..
T Consensus        65 ~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~  144 (311)
T d1nr0a1          65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG  144 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC
T ss_pred             EEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccc
Confidence            479999999999999999999987 22  23456789999999999999999998875  46699999999998888999


Q ss_pred             CCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          78 HSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      |...|.+++|+|++.  +++|+.|+.|++||+++++.+..+..|...+..+
T Consensus       145 h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v  195 (311)
T d1nr0a1         145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV  195 (311)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEE
T ss_pred             cccccccccccccceeeeccccccccccccccccccccccccccccccccc
Confidence            999999999999865  7889999999999999999999998888776544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.7e-23  Score=126.97  Aligned_cols=123  Identities=17%  Similarity=0.224  Sum_probs=109.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee--cCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS--FHSA   80 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~--~~~~   80 (131)
                      +.+.+..+++|+.|+.|++||+. ++.+..+.+|.+.|.+++|+|++.++++++.|+.+++||++....+..+.  .+..
T Consensus       192 ~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~  271 (340)
T d1tbga_         192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC  271 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             cccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccC
Confidence            46678899999999999999987 77788889999999999999999999999999999999999887766553  3556


Q ss_pred             CeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          81 PALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      .+.+++|+|++. +++++.|+.|++||+++++++.++.+|...+..+
T Consensus       272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l  318 (340)
T d1tbga_         272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             ceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            799999999987 8999999999999999999999999998877554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3e-23  Score=131.84  Aligned_cols=109  Identities=19%  Similarity=0.381  Sum_probs=95.0

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC---ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce--eeeeec
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC--EQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~--~~~~~~   77 (131)
                      +|+|++++|++|+.|+.|++||..+.   .+..+.+|.++|.+++|+|+++++++++.|+.+++||+.++..  ...+..
T Consensus        14 ~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~   93 (371)
T d1k8kc_          14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR   93 (371)
T ss_dssp             EECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccc
Confidence            58999999999999999999998632   5667789999999999999999999999999999999987653  344556


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      +...+.+++|+|+++ +++++.|+.+++|++....
T Consensus        94 ~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~  128 (371)
T d1k8kc_          94 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN  128 (371)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             ccccccccccccccccceeecccCcceeeeeeccc
Confidence            778899999999987 8999999999999886653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.5e-23  Score=128.79  Aligned_cols=104  Identities=20%  Similarity=0.206  Sum_probs=93.3

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceee--cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKST--LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~--~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +|+|++++|++|+.|+.|++|++. ......  ...+...+.+++|+|+++++++++.||.|++||+.+++.+..+.+|.
T Consensus       233 ~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~  312 (340)
T d1tbga_         233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD  312 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC
Confidence            478999999999999999999987 333333  34566789999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEe
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCK  106 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d  106 (131)
                      .+|.+++|+|++. +++|+.|+.|++||
T Consensus       313 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         313 NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999987 89999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-22  Score=125.75  Aligned_cols=123  Identities=22%  Similarity=0.336  Sum_probs=103.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC----Cc--eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCc--ceeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG----SL--KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG--QCEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~----~~--~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~--~~~~~   74 (131)
                      +|+|++++|++|+ ||.|++||+..    ..  .....+|.+.|.+++|+|+++++++++.|+.|++||+...  +....
T Consensus        58 ~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~  136 (337)
T d1gxra_          58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE  136 (337)
T ss_dssp             EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred             EECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccc
Confidence            5899999999997 89999999862    11  2234578899999999999999999999999999998754  45566


Q ss_pred             eecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          75 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      +..+...+..++|+|++. +++++.++.+++|+++++++......|...+..+
T Consensus       137 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l  189 (337)
T d1gxra_         137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI  189 (337)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            777888999999999976 8899999999999999999988888887766543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.5e-22  Score=121.78  Aligned_cols=124  Identities=23%  Similarity=0.449  Sum_probs=111.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCC--------------------CEEEEEeCCCcE
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRG--------------------NYILSAGVDKTT   61 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~~s~~~d~~i   61 (131)
                      +++++++++++++.|+.|++|+.. ++....+..|...+.++.++|+.                    ..+++++.|+.+
T Consensus       150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  229 (317)
T d1vyhc1         150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  229 (317)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEE
Confidence            478899999999999999999987 67777888899999999988753                    468899999999


Q ss_pred             EEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          62 IIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        62 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ++||+++++.+..+..|...+.+++++|++. +++++.|+.|++||+++++++.++.+|...+..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~  295 (317)
T d1vyhc1         230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  295 (317)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            9999999999999999999999999999987 8999999999999999999999999998877554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-21  Score=121.32  Aligned_cols=118  Identities=17%  Similarity=0.252  Sum_probs=105.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC---CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD---GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +|+|++++|++|+.|+.|++||+.   .+....+..|...+.++.|+|++..+++++.++.+++|++.+++.......+.
T Consensus       104 ~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~  183 (337)
T d1gxra_         104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             EECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            489999999999999999999986   34456677888999999999999999999999999999999999888888888


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      ..+.+++|++++. +++++.|+.+++||+++++.+..+....
T Consensus       184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~  225 (337)
T d1gxra_         184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS  225 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             cccccccccccccccccccccccccccccccceeeccccccc
Confidence            9999999999976 8899999999999999999888776433

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.3e-21  Score=124.03  Aligned_cols=124  Identities=23%  Similarity=0.433  Sum_probs=101.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceee-------cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce---
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKST-------LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC---   71 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~-------~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~---   71 (131)
                      .+++++++|++|+.|+.|++|+.. +.....       ..+|.+.|.+++|+|+++++++++.|+.+++||++++..   
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  291 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  291 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccc
Confidence            356688999999999999999987 333322       345888999999999999999999999999999976532   


Q ss_pred             ---------eeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          72 ---------EQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        72 ---------~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                               ......|...+.+++|+|++. +++++.|+.|++||+++++++.++.+|...+..+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~  356 (388)
T d1erja_         292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  356 (388)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             cccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEE
Confidence                     233445778899999999977 8999999999999999999999999998877654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.3e-21  Score=122.11  Aligned_cols=123  Identities=20%  Similarity=0.316  Sum_probs=103.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeec------------------ccccccEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTL------------------GQHKGPIFALKWNKRGNYILSAGVDKTTII   63 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~------------------~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~   63 (131)
                      +|+|+|++|++|+ |+.|++||+. ++.+..+                  ..|...|.+++|+|+++++++++.|+.+++
T Consensus        69 ~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i  147 (388)
T d1erja_          69 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI  147 (388)
T ss_dssp             EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccc
Confidence            4799999999986 8899999986 4444333                  235677999999999999999999999999


Q ss_pred             EECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          64 WDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        64 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      ||...++.+..+.+|...+.++.+++++. +++++.++.+++||.++.........+......+
T Consensus       148 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         148 WDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc
Confidence            99999999999999999999999999876 8899999999999999988877776655544433

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4.2e-22  Score=122.16  Aligned_cols=105  Identities=15%  Similarity=0.312  Sum_probs=90.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCC-ce-eecccccccEEEEEEcCC----------CCEEEEEeCCCcEEEEECCC-c
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGS-LK-STLGQHKGPIFALKWNKR----------GNYILSAGVDKTTIIWDAAS-G   69 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~-~~-~~~~~~~~~i~~~~~~~~----------~~~~~s~~~d~~i~~~d~~~-~   69 (131)
                      +|+|++.+|++|+.||.|++||+... .. ..+..|..+|.+++|+|.          +.++++|+.|+.+++||+++ .
T Consensus       169 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             EeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence            47999999999999999999998733 32 346789999999999874          46899999999999999977 5


Q ss_pred             ceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeC
Q psy3840          70 QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKL  107 (131)
Q Consensus        70 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~  107 (131)
                      +.+..+.+|...|+++.|+|++.+++++.|+.|++|++
T Consensus       249 ~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            56666778999999999999988999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.4e-21  Score=117.71  Aligned_cols=123  Identities=22%  Similarity=0.371  Sum_probs=112.8

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      +|+|++++|++|+.|++|++||+. ++.+.++.+|.+.|.+++++|++..++++..++.+..|+....+....+..+...
T Consensus        24 ~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (317)
T d1vyhc1          24 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN  103 (317)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccccccc
Confidence            478999999999999999999987 7888889999999999999999999999999999999999998888888888899


Q ss_pred             eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          82 ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        82 v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                      +.++.++|++. +++++.|+.+++||+++++.+..+..|...+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (317)
T d1vyhc1         104 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM  148 (317)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             ceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCccee
Confidence            99999999876 899999999999999999999998888766544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.8e-21  Score=122.69  Aligned_cols=123  Identities=16%  Similarity=0.120  Sum_probs=102.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCC-C----ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc-------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDG-S----LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ-------   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~-~----~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~-------   70 (131)
                      .|+|+++.+++|+.|+++++|+... .    .......|...|.+++|+|+++++++++.|+.+++|+.....       
T Consensus       102 ~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~  181 (371)
T d1k8kc_         102 RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP  181 (371)
T ss_dssp             EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred             ccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccc
Confidence            4789999999999999999998752 1    233445688899999999999999999999999999986432       


Q ss_pred             -----------eeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEE
Q psy3840          71 -----------CEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYL  125 (131)
Q Consensus        71 -----------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  125 (131)
                                 .+.....+...+.+++|+|++. +++++.|+.|++||+++++++..+..|..++..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s  248 (371)
T d1k8kc_         182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA  248 (371)
T ss_dssp             BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEE
T ss_pred             ccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccccee
Confidence                       2334456777899999999977 899999999999999999999999988877644

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=1.1e-21  Score=120.78  Aligned_cols=111  Identities=19%  Similarity=0.357  Sum_probs=94.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCcee--ecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee---eeeec
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKS--TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE---QQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~---~~~~~   77 (131)
                      +++|+++++++|+.|+.|++||+.+....  ....|...|.+++|+|++.++++++.++.+++||+.++...   ..+..
T Consensus       143 ~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  222 (299)
T d1nr0a2         143 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF  222 (299)
T ss_dssp             EECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47899999999999999999998744332  34568899999999999999999999999999999876554   34456


Q ss_pred             CCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeee
Q psy3840          78 HSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPV  113 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~  113 (131)
                      |..++.+++|+|++. +++++.|+.|++||++++...
T Consensus       223 h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             cccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            788999999999987 899999999999999876543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.3e-21  Score=121.24  Aligned_cols=119  Identities=15%  Similarity=0.252  Sum_probs=95.6

Q ss_pred             cccCCCCE-EEEEeCCCeEEEEcCC-CCce---eecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCcceeeeee
Q psy3840           3 SSRNNGSF-LATGSYDGYARIWTSD-GSLK---STLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQFS   76 (131)
Q Consensus         3 ~~~~~~~~-l~~~~~d~~i~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~~~~~~~~~   76 (131)
                      +|+|++.. +++++.|+.+++|+.. .+..   .....|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+.
T Consensus       166 ~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~  245 (325)
T d1pgua1         166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE  245 (325)
T ss_dssp             EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             cccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc
Confidence            36777664 6789999999999976 3322   334567888999999995 6889999999999999999999999888


Q ss_pred             cCCCCeEEEEEc---CCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          77 FHSAPALDVDWQ---SNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        77 ~~~~~v~~~~~~---~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      .|..++..+.|+   |+++ |++++.|+.|+|||+++++++..+..|..
T Consensus       246 ~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence            777666544443   4554 99999999999999999999998876544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2.2e-20  Score=115.52  Aligned_cols=66  Identities=17%  Similarity=0.140  Sum_probs=54.7

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCc---eeecccccccEEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSL---KSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAAS   68 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~---~~~~~~~~~~i~~~~~~~~-~~~~~s~~~d~~i~~~d~~~   68 (131)
                      +|+|++++|++|+.|++|++||+. +..   .....+|.++|.+++|+|+ +..+++|+.|+.+++|++..
T Consensus        18 ~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_          18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             EEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            489999999999999999999975 222   2333469999999999985 56889999999999998864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.85  E-value=1.6e-20  Score=115.56  Aligned_cols=106  Identities=15%  Similarity=0.287  Sum_probs=86.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCc---eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee--e
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSL---KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF--S   76 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~---~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~--~   76 (131)
                      +|+|+++++++++.|+.|++||+. +..   ...+..|..+|.+++|+|+++++++++.|+.+++||++++......  .
T Consensus       186 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  265 (299)
T d1nr0a2         186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG  265 (299)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEec
Confidence            478999999999999999999976 322   3455678999999999999999999999999999999876543322  2


Q ss_pred             c-CCCCeEEEEEcCCCcEEEEeCCCcEEEEeCC
Q psy3840          77 F-HSAPALDVDWQSNTSFASCSTDQHIHVCKLH  108 (131)
Q Consensus        77 ~-~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~  108 (131)
                      . +...+.++.|.++..+++++.|+.|++||+.
T Consensus       266 ~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         266 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            2 3346777777666679999999999999984

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=8.9e-20  Score=111.68  Aligned_cols=124  Identities=14%  Similarity=0.253  Sum_probs=99.2

Q ss_pred             cccCCCCEEEEEeCCC-eEEEEcCCC-Cceee-cccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee-eeecC
Q psy3840           3 SSRNNGSFLATGSYDG-YARIWTSDG-SLKST-LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ-QFSFH   78 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~-~i~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~-~~~~~   78 (131)
                      +++++++.+++++.++ .+++|++.. +.... ...|.+++.+++|+|++.++++++.||.+++||+.+++... .+..|
T Consensus       125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h  204 (287)
T d1pgua2         125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR  204 (287)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred             eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccc
Confidence            3567788888888765 699999872 22222 34577899999999999999999999999999999887654 45678


Q ss_pred             CCCeEEEEEcCCC----------c-EEEEeCCCcEEEEeCCC-CeeeEEEecccceEEEE
Q psy3840          79 SAPALDVDWQSNT----------S-FASCSTDQHIHVCKLHS-DKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        79 ~~~v~~~~~~~~~----------~-~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~  126 (131)
                      ..++.+++|+|.+          . +++++.|+.|++||+++ .+.+..+.+|...+..+
T Consensus       205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v  264 (287)
T d1pgua2         205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL  264 (287)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred             ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEE
Confidence            8899999998742          3 78999999999999977 45677777888877655

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=7.4e-20  Score=113.82  Aligned_cols=111  Identities=27%  Similarity=0.467  Sum_probs=89.4

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      ++++++++|++|+.|++|++||+. ++.+.++.+|.++|.+++|+|+ ..+++++.|+.+++|+....+...........
T Consensus        18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~   96 (355)
T d1nexb2          18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST   96 (355)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccc
Confidence            456789999999999999999987 7888999999999999999985 58999999999999999988776665544333


Q ss_pred             --eEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeE
Q psy3840          82 --ALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        82 --v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                        .....+.+++. +++++.|+.|++||+++...+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~  132 (355)
T d1nexb2          97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  132 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSEEEEEECCC-----
T ss_pred             ccccccccccccceeeeecCCCcEEEEEccCCceec
Confidence              34455667766 8899999999999998765443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.6e-19  Score=107.63  Aligned_cols=118  Identities=24%  Similarity=0.408  Sum_probs=87.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeee------
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF------   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~------   75 (131)
                      ++++++++|++|+.||+|++||+. ++.+.++.+|.+.|.+++|  +++++++++.|+.+++|++..+......      
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~   97 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA   97 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccc
Confidence            567899999999999999999987 8888999999999999876  6789999999999999999775422111      


Q ss_pred             -------------------------------------ecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          76 -------------------------------------SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        76 -------------------------------------~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                                                           ..+...+....+.+. .+++++.|+.+++||+++++.+..+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d~~i~~~d~~~~~~~~~~~~  176 (293)
T d1p22a2          98 VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTIKVWNTSTCEFVRTLNG  176 (293)
T ss_dssp             EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             cccccccccceeecccccceeEeeccccccccccccccccccccccceeccc-ccccccCCCceeeecCCCCcEEEEEcc
Confidence                                                 112223333333222 256667778888888887777777766


Q ss_pred             ccceE
Q psy3840         119 HTRVY  123 (131)
Q Consensus       119 ~~~~~  123 (131)
                      +...+
T Consensus       177 ~~~~v  181 (293)
T d1p22a2         177 HKRGI  181 (293)
T ss_dssp             CSSCE
T ss_pred             ccccc
Confidence            65544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-18  Score=107.86  Aligned_cols=111  Identities=23%  Similarity=0.437  Sum_probs=93.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec---CC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF---HS   79 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~---~~   79 (131)
                      +++++..+++|+.||.|++||+. ++.+..+..|...+.++.++  ++++++++.|+.+++||+...+....+..   +.
T Consensus       183 ~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  260 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ  260 (342)
T ss_dssp             EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCS
T ss_pred             ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceee
Confidence            45678999999999999999987 67788888999999888775  56999999999999999998887766654   34


Q ss_pred             CCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          80 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      ..+.++.++++ .+++++.|+.|++||+++++.++++.
T Consensus       261 ~~~~~~~~~~~-~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         261 SAVTCLQFNKN-FVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             SCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eceeecccCCC-eeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            56666666543 48999999999999999999988774

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.7e-19  Score=111.79  Aligned_cols=115  Identities=18%  Similarity=0.210  Sum_probs=94.8

Q ss_pred             cccC--CCCEEEEEeCCCeEEEEcCC-CCc--------eeecccccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCc
Q psy3840           3 SSRN--NGSFLATGSYDGYARIWTSD-GSL--------KSTLGQHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASG   69 (131)
Q Consensus         3 ~~~~--~~~~l~~~~~d~~i~~~~~~-~~~--------~~~~~~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~   69 (131)
                      +|+|  ++++|++|+.||+|++||+. ++.        ...+..|.++|.+++|+++++.+++++.  ++.+++|+..++
T Consensus        70 ~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~  149 (325)
T d1pgua1          70 KFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG  149 (325)
T ss_dssp             EECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC
T ss_pred             EEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc
Confidence            3665  67899999999999999975 211        1234567889999999999999887754  678999999999


Q ss_pred             ceeeeeecCCCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeEEEe
Q psy3840          70 QCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        70 ~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~  117 (131)
                      +.+..+..|...+.+++|+|++.  +++++.|+.+++||.++.+......
T Consensus       150 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~  199 (325)
T d1pgua1         150 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR  199 (325)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred             ccceeeeecccccccccccccccceEEEeecccccccccccccccceecc
Confidence            99999999999999999999864  6789999999999998877666554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.82  E-value=4.7e-19  Score=110.87  Aligned_cols=117  Identities=16%  Similarity=0.155  Sum_probs=97.7

Q ss_pred             cccC-CCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRN-NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD--KTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d--~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      .||| ||+++++++ +|.|.+||..++.+..+ +|...+.+++|+|+++.+++++.+  ..+++||..+++.. .+..+.
T Consensus         9 ~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~   85 (360)
T d1k32a3           9 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL   85 (360)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC
T ss_pred             cccCCCCCEEEEEE-CCeEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCC
Confidence            4898 999999986 57999999986666555 689999999999999998876654  37899999887654 556678


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      ..+.+++|+|+++ +++++.++.+++|++.+++....+..|...
T Consensus        86 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (360)
T d1k32a3          86 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM  129 (360)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred             ceEEeeeecccccccceeccccccccccccccceeeeeeccccc
Confidence            8999999999987 899999999999999999888777666543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.4e-19  Score=111.51  Aligned_cols=119  Identities=19%  Similarity=0.293  Sum_probs=95.6

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP   81 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~   81 (131)
                      .++++++.+++++.|+.|++|+.. +..+..+.+|...|.+++++  ++++++++.||.|++||+++.....  ..|...
T Consensus       208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~  283 (355)
T d1nexb2         208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTN  283 (355)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEECTT
T ss_pred             cccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceec--ccccCC
Confidence            367899999999999999999987 77788889999999999886  5789999999999999998876543  334445


Q ss_pred             eEEE-EEcCCCcEEEEeCCCcEEEEeCCCCeeeEE-EecccceEEE
Q psy3840          82 ALDV-DWQSNTSFASCSTDQHIHVCKLHSDKPVKS-FEGHTRVYYL  125 (131)
Q Consensus        82 v~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~  125 (131)
                      +..+ .+++++.+++++.|+.|++||+++++++.. +.+|...+..
T Consensus       284 ~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~  329 (355)
T d1nexb2         284 LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWS  329 (355)
T ss_dssp             CCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEE
Confidence            5444 456677777777899999999999988754 5667665543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=9.9e-19  Score=111.58  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=86.8

Q ss_pred             CCCEEEEEeCCCeEEEEcCCC--C-----------------ceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy3840           7 NGSFLATGSYDGYARIWTSDG--S-----------------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA   67 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~--~-----------------~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~   67 (131)
                      .++++++++.|+++++|++..  .                 .......+...+.+++|+|++ ++++|+.|+.|++||+.
T Consensus       135 ~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~  213 (393)
T d1sq9a_         135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS  213 (393)
T ss_dssp             -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred             cccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec
Confidence            357889999999999998641  0                 111222345668899999987 88999999999999999


Q ss_pred             Ccceeeee------ecCCCCeEEEEEcCCCc-EEEEeCCC---cEEEEeCCCCeeeEEEe
Q psy3840          68 SGQCEQQF------SFHSAPALDVDWQSNTS-FASCSTDQ---HIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        68 ~~~~~~~~------~~~~~~v~~~~~~~~~~-~~~~~~d~---~i~i~d~~~~~~~~~~~  117 (131)
                      +++.+..+      ..|..+|.+++|+|+++ |++++.|+   .|++||+++++++..+.
T Consensus       214 ~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~  273 (393)
T d1sq9a_         214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS  273 (393)
T ss_dssp             TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             ccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeec
Confidence            98776544      35778999999999987 88888886   48999999998888764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=2.4e-18  Score=107.58  Aligned_cols=116  Identities=15%  Similarity=0.142  Sum_probs=98.0

Q ss_pred             cccCCCCEEEEEeCCC--eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCC
Q psy3840           3 SSRNNGSFLATGSYDG--YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA   80 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~--~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~   80 (131)
                      +|+|||+.|++++.+.  .|++||..+.....+..|...+.+++|+|+++++++++.++.+++|++.+++....+..+..
T Consensus        49 ~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (360)
T d1k32a3          49 RRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA  128 (360)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred             EECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc
Confidence            5899999998776543  69999999888888889999999999999999999999999999999999998888888888


Q ss_pred             CeEEEEEcCCCc-EEEE----------eCCCcEEEEeCCCCeeeEEEec
Q psy3840          81 PALDVDWQSNTS-FASC----------STDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        81 ~v~~~~~~~~~~-~~~~----------~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .+.+++|+|+++ ++.+          ..++.+++||+++++.......
T Consensus       129 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~  177 (360)
T d1k32a3         129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE  177 (360)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred             cccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccc
Confidence            899999999988 5433          2345689999998876554443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=2.9e-17  Score=105.82  Aligned_cols=110  Identities=11%  Similarity=0.044  Sum_probs=86.7

Q ss_pred             EEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee--ee---cCCCCeE
Q psy3840          10 FLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ--FS---FHSAPAL   83 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~--~~---~~~~~v~   83 (131)
                      ++++++.||+|++||+. ++.+.++..+. .+..++|+|||+++++++.|+.+++||+.+++....  +.   .+...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            55777889999999987 77778887764 589999999999999999999999999998875433  22   2334455


Q ss_pred             EEEEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          84 DVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        84 ~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      +++|+||++ + +++..++.+.+||..+++++.....|.
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~  151 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG  151 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccC
Confidence            667788987 4 555678999999999998887766544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.4e-16  Score=96.61  Aligned_cols=112  Identities=19%  Similarity=0.484  Sum_probs=94.4

Q ss_pred             cCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           5 RNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         5 ~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      .+....+++++.|+.|++||.. ...+..+.+|...+..+.  +++..+++++.|+.+++||++.++.+..+..|...+.
T Consensus       144 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~  221 (342)
T d2ovrb2         144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS  221 (342)
T ss_dssp             EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred             ccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEeccccccee
Confidence            3456788899999999999987 666777788877666554  4688999999999999999999999999998888999


Q ss_pred             EEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          84 DVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        84 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      ++.++++ .+++++.|+.|++||+...+....+..+
T Consensus       222 ~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~  256 (342)
T d2ovrb2         222 GMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGP  256 (342)
T ss_dssp             EEEEETT-EEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred             EEecCCC-EEEEEcCCCEEEEEeccccccccccccc
Confidence            8888654 5899999999999999988887777654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=5.6e-17  Score=104.95  Aligned_cols=110  Identities=12%  Similarity=0.027  Sum_probs=86.9

Q ss_pred             CEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee--eeee---cCCCCe
Q psy3840           9 SFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFS---FHSAPA   82 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~--~~~~---~~~~~v   82 (131)
                      -++++.+.+|+|.+||.. ++.+..+..+. .+..++|+|||+++++++.|+.+++||+.+++..  ..++   .+...+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            345888899999999988 77777777664 5899999999999999999999999999886542  3333   233344


Q ss_pred             EEEEEcCCCc-E-EEEeCCCcEEEEeCCCCeeeEEEecc
Q psy3840          83 LDVDWQSNTS-F-ASCSTDQHIHVCKLHSDKPVKSFEGH  119 (131)
Q Consensus        83 ~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~~  119 (131)
                      .+..|+||++ + +++..++.+++||..+++.+..+..+
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence            5556778887 4 67888999999999999988877654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=6e-17  Score=99.85  Aligned_cols=90  Identities=12%  Similarity=0.051  Sum_probs=74.0

Q ss_pred             CceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee---eeecCCCCeEEEEEcCC-Cc-EEEEeCCCcE
Q psy3840          28 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ---QFSFHSAPALDVDWQSN-TS-FASCSTDQHI  102 (131)
Q Consensus        28 ~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~---~~~~~~~~v~~~~~~~~-~~-~~~~~~d~~i  102 (131)
                      +.+...++|.+.|++|+|+|++++|++++.|++|++||++.+....   ....|..+|.+++|+|+ +. +++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            3456678899999999999999999999999999999997654332   23358889999999986 44 8999999999


Q ss_pred             EEEeCCCCeeeEEEe
Q psy3840         103 HVCKLHSDKPVKSFE  117 (131)
Q Consensus       103 ~i~d~~~~~~~~~~~  117 (131)
                      ++|++..........
T Consensus        82 ~~w~~~~~~~~~~~~   96 (342)
T d1yfqa_          82 LKVDLIGSPSFQALT   96 (342)
T ss_dssp             EEECSSSSSSEEECB
T ss_pred             eeeeccccccccccc
Confidence            999998776655544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-15  Score=91.34  Aligned_cols=87  Identities=17%  Similarity=0.330  Sum_probs=73.0

Q ss_pred             eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCC
Q psy3840          30 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS  109 (131)
Q Consensus        30 ~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~  109 (131)
                      +.....|...|+|++  ++++++++|+.||+|++||+.+++++..+.+|..+|.+++|++ ..+++++.|+.+++|+++.
T Consensus         8 i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           8 IHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             EECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEESSS
T ss_pred             EeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc-ceeeccccccccccccccc
Confidence            344556778898875  5799999999999999999999999999999999999998743 3489999999999999998


Q ss_pred             CeeeEEEecc
Q psy3840         110 DKPVKSFEGH  119 (131)
Q Consensus       110 ~~~~~~~~~~  119 (131)
                      +........+
T Consensus        85 ~~~~~~~~~~   94 (293)
T d1p22a2          85 GEMLNTLIHH   94 (293)
T ss_dssp             CCEEEEECCC
T ss_pred             cccccccccc
Confidence            8776665443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.60  E-value=8.5e-15  Score=90.74  Aligned_cols=111  Identities=5%  Similarity=-0.059  Sum_probs=85.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCceeecc-cccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLKSTLG-QHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +++++++++++++.++.|.+||+. ++.+.++. .+......++|+|||++++ ++..++.+++||+.+++.+..+....
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~   82 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   82 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence            689999999999999999999998 66666665 3455678999999999875 55578999999999998877665322


Q ss_pred             ------CCeEEEEEcCCCc-EEEEe------------CCCcEEEEeCCCCeee
Q psy3840          80 ------APALDVDWQSNTS-FASCS------------TDQHIHVCKLHSDKPV  113 (131)
Q Consensus        80 ------~~v~~~~~~~~~~-~~~~~------------~d~~i~i~d~~~~~~~  113 (131)
                            ..+..++++|+++ ++.+.            .+..+.+|+..+++..
T Consensus        83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence                  2356789999987 44432            4677889988776544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=3.3e-14  Score=91.85  Aligned_cols=112  Identities=10%  Similarity=-0.021  Sum_probs=86.2

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CC--ce---eecccccccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCcceeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GS--LK---STLGQHKGPIFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~--~~---~~~~~~~~~i~~~~~~~~~~~~-~s~~~d~~i~~~d~~~~~~~~~~   75 (131)
                      +|+|||+++++++.|+.+++||+. ++  .+   .....|.+.+.+..|+|||+++ +++..++.+++||..+++.+..+
T Consensus        68 ~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~  147 (432)
T d1qksa2          68 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ  147 (432)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeee
Confidence            589999999999999999999986 33  22   2234566667777889999976 67778999999999999887665


Q ss_pred             ecC-----------CCCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeE
Q psy3840          76 SFH-----------SAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVK  114 (131)
Q Consensus        76 ~~~-----------~~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~  114 (131)
                      ..+           ......+.++|++.  +++...++.+.+||..+.+...
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~  199 (432)
T d1qksa2         148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK  199 (432)
T ss_dssp             ECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred             ccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence            432           34466788899875  4667778899999998776544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.60  E-value=1.5e-13  Score=83.65  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=89.1

Q ss_pred             EEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcC
Q psy3840          12 ATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS   89 (131)
Q Consensus        12 ~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~   89 (131)
                      ++++.|++|.+||+. ++.+.++.. ......++|+|+|++++ ++..++.|++||+.+++.+..+..+. .+..+.+++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~   83 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP   83 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence            345678999999987 555555543 34578999999999774 66678999999999999988887654 568899999


Q ss_pred             CCc--EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEEe
Q psy3840          90 NTS--FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLAM  127 (131)
Q Consensus        90 ~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  127 (131)
                      ++.  ++++..++.+.+|+..+++.+..+..+.......+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL  123 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             ccccccccccccceeeecccccceeeeeccccccceEEEe
Confidence            876  45666778899999999998888877665554444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=5.3e-14  Score=86.82  Aligned_cols=113  Identities=6%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             CEEEEEeCCCeEEEEcCC-CCceeeccc--ccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCcceeeeeecCC-----
Q psy3840           9 SFLATGSYDGYARIWTSD-GSLKSTLGQ--HKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQFSFHS-----   79 (131)
Q Consensus         9 ~~l~~~~~d~~i~~~~~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~~~~~~~~~~~-----   79 (131)
                      +++++++.|++|++||+. ++.+..+..  +...+..++|+|+|++++ +++.++.|.+||+.+++.+..+..+.     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            579999999999999998 566666643  334578899999999874 56679999999999999887776543     


Q ss_pred             CCeEEEEEcCCCc-EEEEe------------CCCcEEEEeCCCCeeeEEEecccc
Q psy3840          80 APALDVDWQSNTS-FASCS------------TDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      ..+..++++|++. ++.+.            .+..+.+||..+++.+..+..+..
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  136 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ  136 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC
Confidence            2345788999977 54443            467889999999988887765544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.49  E-value=8.9e-12  Score=75.68  Aligned_cols=119  Identities=8%  Similarity=0.081  Sum_probs=92.5

Q ss_pred             cccCCCCEEE-EEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCcceeeeeecCC
Q psy3840           3 SSRNNGSFLA-TGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQCEQQFSFHS   79 (131)
Q Consensus         3 ~~~~~~~~l~-~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~i~~~d~~~~~~~~~~~~~~   79 (131)
                      +++|+|++++ +++.++.|++||+. ++.+..+..+. ....+.+++++..++. +..++.+.+|+..+++....+..+ 
T Consensus        38 a~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  115 (301)
T d1l0qa2          38 VISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-  115 (301)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-
T ss_pred             EEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeecccc-
Confidence            5899999885 55678999999987 66666666554 4588999999886655 556778999999999888777754 


Q ss_pred             CCeEEEEEcCCCc--EEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          80 APALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        80 ~~v~~~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      .....+.++|++.  ++++..++.+.+|+..+...+..+..+..+.
T Consensus       116 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (301)
T d1l0qa2         116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK  161 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE
T ss_pred             ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCce
Confidence            5678899999976  4566677889999999998888776655443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.48  E-value=1.8e-13  Score=84.70  Aligned_cols=111  Identities=7%  Similarity=-0.064  Sum_probs=84.7

Q ss_pred             EeCCCeEEEEcCC-CCc-eeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCC
Q psy3840          14 GSYDGYARIWTSD-GSL-KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT   91 (131)
Q Consensus        14 ~~~d~~i~~~~~~-~~~-~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~   91 (131)
                      +..+..+.+|+.. +.. ......+...+..+.+++++..++.... +.+.+||..+++.+..+.. ...+.+++|+||+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~-~~~~~~va~s~DG  303 (346)
T d1jmxb_         226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKG  303 (346)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC-SSCCCEEEECSSS
T ss_pred             ccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC-CCCEEEEEEcCCC
Confidence            3344557777766 222 2334557778888999998877776654 5799999999998877764 4578899999998


Q ss_pred             c-EEEEeCCCcEEEEeCCCCeeeEEEecccceEEEE
Q psy3840          92 S-FASCSTDQHIHVCKLHSDKPVKSFEGHTRVYYLA  126 (131)
Q Consensus        92 ~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  126 (131)
                      + +++++.|+.|++||.++++.+.++..+.+.....
T Consensus       304 ~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~~~~~  339 (346)
T d1jmxb_         304 DKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTT  339 (346)
T ss_dssp             SCEEEESBSSEEEEEETTTTEEEEEEECSSSCCBTC
T ss_pred             CEEEEEeCCCcEEEEECccCCEEEEEECCCCCccee
Confidence            7 8899999999999999999999998766554333

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.47  E-value=2.8e-13  Score=87.06  Aligned_cols=108  Identities=8%  Similarity=-0.030  Sum_probs=73.9

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCC-CCce-----eecccccccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCcceeeee
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSD-GSLK-----STLGQHKGPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQCEQQF   75 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~-~~~~-----~~~~~~~~~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~~~~~~~~~   75 (131)
                      +|+|||+++++++.|++|++||+. ++..     ....+|.+.+.+++|+|+|++++++ ..++.+.+||..+++....+
T Consensus        68 afSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~  147 (426)
T d1hzua2          68 RMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV  147 (426)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEe
Confidence            589999999999999999999987 4322     2234566677788889999987555 57899999999998877766


Q ss_pred             ecCCCC-----------eEEEEEcCCCc-E-EEEeCCCcEEEEeCCCC
Q psy3840          76 SFHSAP-----------ALDVDWQSNTS-F-ASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        76 ~~~~~~-----------v~~~~~~~~~~-~-~~~~~d~~i~i~d~~~~  110 (131)
                      ..+...           ...+..++++. + .+....+.+.+++....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~  195 (426)
T d1hzua2         148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI  195 (426)
T ss_dssp             ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSS
T ss_pred             eccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccc
Confidence            544333           34445555543 2 23333445555555443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=5.3e-12  Score=77.79  Aligned_cols=104  Identities=11%  Similarity=0.153  Sum_probs=73.8

Q ss_pred             EEEEEeCCCeEEEEcCC-CCce--eecccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeeee---ecCCCCe
Q psy3840          10 FLATGSYDGYARIWTSD-GSLK--STLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQF---SFHSAPA   82 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~-~~~~--~~~~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~~---~~~~~~v   82 (131)
                      .+++++.|++|++|++. ...+  .....|.+.+..++|+|+|++|++++ .++.|++|++.........   ......+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            34666789999999986 2222  23346778899999999999886555 5899999998765433222   2234556


Q ss_pred             EEEEEcCCCc-EEEEe-CCCcEEEEeCCCCeee
Q psy3840          83 LDVDWQSNTS-FASCS-TDQHIHVCKLHSDKPV  113 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~-~d~~i~i~d~~~~~~~  113 (131)
                      ..++|+|+++ +++++ .++.+.+|+.......
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~  118 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV  118 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccce
Confidence            7899999987 66665 4668999987765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=8.2e-12  Score=77.66  Aligned_cols=118  Identities=12%  Similarity=0.130  Sum_probs=86.3

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeeccc-------------ccccEEEEEEcCCCCEEEEEeCC----------Cc
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLGQ-------------HKGPIFALKWNKRGNYILSAGVD----------KT   60 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~s~~~d----------~~   60 (131)
                      +.+++..++.++.++.+.+|+.....+..+..             .......+++++++..++....+          ..
T Consensus       202 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  281 (355)
T d2bbkh_         202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF  281 (355)
T ss_dssp             EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred             ccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCe
Confidence            45567788888899999999987433221111             11233457889999887765433          36


Q ss_pred             EEEEECCCcceeeeeecCCCCeEEEEEcCCCc---EEEEeCCCcEEEEeCCCCeeeEEEecccce
Q psy3840          61 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTS---FASCSTDQHIHVCKLHSDKPVKSFEGHTRV  122 (131)
Q Consensus        61 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  122 (131)
                      +.+||..+++.+..+... ..+.+++|+|+++   ++++..|+.|++||+++++.+.++..+...
T Consensus       282 v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~  345 (355)
T d2bbkh_         282 VVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG  345 (355)
T ss_dssp             EEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred             EEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence            899999999988877643 4578999999975   356677899999999999999999765443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=2.6e-11  Score=74.54  Aligned_cols=100  Identities=7%  Similarity=-0.032  Sum_probs=78.1

Q ss_pred             eEEEEcCC-CCce-eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEE
Q psy3840          19 YARIWTSD-GSLK-STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FAS   95 (131)
Q Consensus        19 ~i~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~   95 (131)
                      .+.+|+.. +... .....+......+.++|++.+++.+  ++.+++||+.+++.+..+.. ...+.+++|+|+++ +++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dG~~l~v  296 (337)
T d1pbyb_         220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEE
T ss_pred             cEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC-CCCEEEEEECCCCCEEEE
Confidence            46666665 3322 2234456677888899999988766  47899999999998888764 46788999999987 888


Q ss_pred             EeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          96 CSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        96 ~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      ++.++.|++||.++++.+.+++....
T Consensus       297 ~~~~~~i~v~D~~t~~~v~~i~~~g~  322 (337)
T d1pbyb_         297 GGALGDLAAYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             ESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred             EeCCCcEEEEECCCCcEEEEEECCCC
Confidence            99999999999999999998875443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=9.5e-11  Score=72.76  Aligned_cols=117  Identities=8%  Similarity=0.038  Sum_probs=86.0

Q ss_pred             ccccCCCCEEEEEe-----CCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEE----------eCCCcEEEEE
Q psy3840           2 QSSRNNGSFLATGS-----YDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSA----------GVDKTTIIWD   65 (131)
Q Consensus         2 ~~~~~~~~~l~~~~-----~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~----------~~d~~i~~~d   65 (131)
                      .+.+||++++++..     .+..|.+||.. ++.+.++..+..+  .++|+|+++.+++.          ..++.+++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            46789999998764     34569999987 6666766654443  68999999987754          3478999999


Q ss_pred             CCCcceeeeeecCC-------CCeEEEEEcCCCc-EEEE--eCCCcEEEEeCCCCeeeEEEeccc
Q psy3840          66 AASGQCEQQFSFHS-------APALDVDWQSNTS-FASC--STDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        66 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~-~~~~--~~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      +.+++.+..+..+.       .....+.|+|+++ ++..  +.+..+.+|+..+++.+..+..+.
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  149 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC
Confidence            99998877665322       2245688999976 4443  456689999999998887776543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.26  E-value=3.7e-11  Score=77.79  Aligned_cols=110  Identities=13%  Similarity=0.063  Sum_probs=83.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCcee-----ecccccccEEEEEEcCCCCEEEEEeC---------CCcEEEEECCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKS-----TLGQHKGPIFALKWNKRGNYILSAGV---------DKTTIIWDAAS   68 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~-----~~~~~~~~i~~~~~~~~~~~~~s~~~---------d~~i~~~d~~~   68 (131)
                      |.++++++..  .++.+.+||+. ++...     .+..|...+.++.|+||+++++.++.         ++.+.+||+.+
T Consensus        24 W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~  101 (470)
T d2bgra1          24 WISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK  101 (470)
T ss_dssp             ECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             eCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence            5677877764  47789999987 44333     33445678999999999999887743         56788999998


Q ss_pred             cceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          69 GQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        69 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      ++. ..+..+...+..+.|+|+|+.++-..++.+++|+..+++..+..
T Consensus       102 ~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1         102 RQL-ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             TEE-CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECC
T ss_pred             Ccc-cccccCCccccccccccCcceeeEeecccceEEECCCCceeeee
Confidence            864 45666778899999999998333356788999999988765543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.7e-10  Score=69.32  Aligned_cols=108  Identities=7%  Similarity=0.065  Sum_probs=75.7

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC-CCceeec---ccccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcceeee--
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD-GSLKSTL---GQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQ--   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~-~~~~~~~---~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~~~~--   74 (131)
                      +|+|||++|++++. |+.|++|++. ......+   ..+...+..++|+|+|+++++++. ++.+.+|+.........  
T Consensus        43 a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~  122 (333)
T d1ri6a_          43 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD  122 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc
Confidence            58999999966655 8999999976 2222222   223345678999999999998876 67888888776544332  


Q ss_pred             eecCCCCeEEEEEcCCCc-EEEEe-CCCcEEEEeCCCC
Q psy3840          75 FSFHSAPALDVDWQSNTS-FASCS-TDQHIHVCKLHSD  110 (131)
Q Consensus        75 ~~~~~~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~~~  110 (131)
                      ...+...+.++.++|+++ ++.++ .+..+.+|+....
T Consensus       123 ~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_         123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            234455678899999977 44444 5567999998765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=2e-10  Score=74.32  Aligned_cols=96  Identities=10%  Similarity=0.040  Sum_probs=73.9

Q ss_pred             cccCCCCEEEEEeC---------CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceee
Q psy3840           3 SSRNNGSFLATGSY---------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ   73 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---------d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~   73 (131)
                      +||||+++|+.++.         ++.+.+||+.++....+..+.+.+..+.|+|+|+.++.. .++.+++|+..+++...
T Consensus        68 ~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1          68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             EECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceee
Confidence            37999999998853         467889999987788888899999999999999999985 56689999998886554


Q ss_pred             eeec------------------CCCCeEEEEEcCCCc-EEEEeCC
Q psy3840          74 QFSF------------------HSAPALDVDWQSNTS-FASCSTD   99 (131)
Q Consensus        74 ~~~~------------------~~~~v~~~~~~~~~~-~~~~~~d   99 (131)
                      ....                  .......+.|+|||+ ++....|
T Consensus       147 ~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            3221                  112345678999987 6665543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.11  E-value=7.5e-09  Score=64.56  Aligned_cols=111  Identities=12%  Similarity=0.036  Sum_probs=76.0

Q ss_pred             EEEEEeCCCeEEEEcCCCCce---eecccc----------cccEEEEEEcCCCCEE----------EEEeCCCcEEEEEC
Q psy3840          10 FLATGSYDGYARIWTSDGSLK---STLGQH----------KGPIFALKWNKRGNYI----------LSAGVDKTTIIWDA   66 (131)
Q Consensus        10 ~l~~~~~d~~i~~~~~~~~~~---~~~~~~----------~~~i~~~~~~~~~~~~----------~s~~~d~~i~~~d~   66 (131)
                      .++..+.++.+.+|+......   .....+          ......+++++++..+          +....++.+.+||.
T Consensus       226 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~  305 (373)
T d2madh_         226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence            344445678888888663221   111111          1223344555555443          44556778999999


Q ss_pred             CCcceeeeeecCCCCeEEEEEcCCCc--E-EEEeCCCcEEEEeCCCCeeeEEEecccc
Q psy3840          67 ASGQCEQQFSFHSAPALDVDWQSNTS--F-ASCSTDQHIHVCKLHSDKPVKSFEGHTR  121 (131)
Q Consensus        67 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~  121 (131)
                      .+++.+..+. +...+..+.|+||++  + ++++.|+.|++||+.+++.+.++..+..
T Consensus       306 ~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~  362 (373)
T d2madh_         306 LVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS  362 (373)
T ss_pred             CCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC
Confidence            9999888776 456788999999976  3 5788899999999999999999986544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.03  E-value=3.8e-09  Score=65.92  Aligned_cols=82  Identities=13%  Similarity=0.014  Sum_probs=62.6

Q ss_pred             CCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCE--EEEEeCCCcEEEEECCCcceeeeeecCCCCeEE
Q psy3840           8 GSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNY--ILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD   84 (131)
Q Consensus         8 ~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~--~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~   84 (131)
                      +..++....++.+.+||.. ++.+..+ .+...+..++|+|+|+.  +++++.|+.+++||+.+++.+..+..+....+.
T Consensus       288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~  366 (373)
T d2madh_         288 QSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQV  366 (373)
T ss_pred             CceEEeecCCCeEEEEECCCCcEEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcE
Confidence            3344555667788999987 5555544 45667899999999984  467888999999999999999999877667777


Q ss_pred             EEEcCC
Q psy3840          85 VDWQSN   90 (131)
Q Consensus        85 ~~~~~~   90 (131)
                      ++..++
T Consensus       367 l~~~~~  372 (373)
T d2madh_         367 LSVMNE  372 (373)
T ss_pred             EEEecC
Confidence            776554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.93  E-value=2.9e-08  Score=62.12  Aligned_cols=115  Identities=4%  Similarity=-0.115  Sum_probs=79.4

Q ss_pred             ccCCCCEEEE---EeCCCe--EEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q psy3840           4 SRNNGSFLAT---GSYDGY--ARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAG----------VDKTTIIWDAA   67 (131)
Q Consensus         4 ~~~~~~~l~~---~~~d~~--i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~----------~d~~i~~~d~~   67 (131)
                      ..++++....   ...++.  +.++|.. ++.+.++..+..+  .++|+|+++.++..+          .++.|.+||..
T Consensus        27 ~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~  104 (368)
T d1mdah_          27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV  104 (368)
T ss_dssp             CCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred             cCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECC
Confidence            4556665322   334555  5556766 5566665555444  578999999887654          36779999999


Q ss_pred             CcceeeeeecCC-------CCeEEEEEcCCCc-EEEEe-CCCcEEEEeCCCCeeeEEEeccc
Q psy3840          68 SGQCEQQFSFHS-------APALDVDWQSNTS-FASCS-TDQHIHVCKLHSDKPVKSFEGHT  120 (131)
Q Consensus        68 ~~~~~~~~~~~~-------~~v~~~~~~~~~~-~~~~~-~d~~i~i~d~~~~~~~~~~~~~~  120 (131)
                      +++.+..+..+.       .....++|+||++ ++.+. .++.+.+||+.+++.+..+..+.
T Consensus       105 t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~  166 (368)
T d1mdah_         105 TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS  166 (368)
T ss_dssp             TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS
T ss_pred             CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC
Confidence            998887765322       2234689999987 65554 57899999999998888776543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=1.9e-07  Score=56.48  Aligned_cols=107  Identities=12%  Similarity=0.201  Sum_probs=80.3

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeecc--cccccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCcceeeeeecC--
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLG--QHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFSFH--   78 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~~~~~~~~--   78 (131)
                      +.++++.+++....+.|.+||..++.+..+.  +.......++++++++.+++-.. +..|.+|+ .+++.+..+...  
T Consensus       164 ~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~  242 (279)
T d1q7fa_         164 VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVK  242 (279)
T ss_dssp             ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSC
T ss_pred             eccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCC
Confidence            4567777777777889999998888776653  34445788999999997776544 45688898 467776666432  


Q ss_pred             CCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCe
Q psy3840          79 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        79 ~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  111 (131)
                      ......+++.|++.++.++.++.|++|......
T Consensus       243 ~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         243 HAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred             CCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeec
Confidence            235789999999997777788999999876554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.70  E-value=1.6e-06  Score=52.86  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=79.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcce-eeeee--cCC
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC-EQQFS--FHS   79 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~-~~~~~--~~~   79 (131)
                      +++|||+++++...+++|..++..++. ..+....+.+.+++|+++++++++...++.+..++...... ...+.  ...
T Consensus        34 Av~pdG~l~vt~~~~~~I~~i~p~g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (302)
T d2p4oa1          34 ASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDA  112 (302)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTC
T ss_pred             EECCCCCEEEEeCCCCEEEEEeCCCCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCc
Confidence            468999999998889999989876653 33445567789999999999999988888888777654321 12221  133


Q ss_pred             CCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCe
Q psy3840          80 APALDVDWQSNTS-FASCSTDQHIHVCKLHSDK  111 (131)
Q Consensus        80 ~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~  111 (131)
                      .....+.+.++++ +++...++.+..+|...+.
T Consensus       113 ~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1         113 IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             SCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cccceeEEccCCCEEeeccccccceeeeccCCc
Confidence            4578899999988 5666677788888887664

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.65  E-value=1.7e-07  Score=58.53  Aligned_cols=80  Identities=16%  Similarity=0.097  Sum_probs=61.2

Q ss_pred             EEEEEcCCCCEEEEEeCC---------CcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc---EEEEeCCCcEEEEeCC
Q psy3840          41 FALKWNKRGNYILSAGVD---------KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS---FASCSTDQHIHVCKLH  108 (131)
Q Consensus        41 ~~~~~~~~~~~~~s~~~d---------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~d~~i~i~d~~  108 (131)
                      ..+++++++..++....+         ..+.+||..+++.+..+.. ...+..+.|+||++   ++++..++.|++||..
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            457888988776654322         3588999999998877764 35678899999975   3566778999999999


Q ss_pred             CCeeeEEEecccc
Q psy3840         109 SDKPVKSFEGHTR  121 (131)
Q Consensus       109 ~~~~~~~~~~~~~  121 (131)
                      +++.+.++.....
T Consensus       346 tgk~~~~i~~g~~  358 (368)
T d1mdah_         346 SDQDQSSVELDKG  358 (368)
T ss_dssp             SCEEEEECCCCSC
T ss_pred             CCCEEEEEECCCC
Confidence            9999999875443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.41  E-value=3.5e-06  Score=54.14  Aligned_cols=107  Identities=9%  Similarity=0.059  Sum_probs=72.1

Q ss_pred             EEEEeCCCeEEEEcCC-CCceeec------------------------------ccccccEEEEEEcCCCCEEEEEe-CC
Q psy3840          11 LATGSYDGYARIWTSD-GSLKSTL------------------------------GQHKGPIFALKWNKRGNYILSAG-VD   58 (131)
Q Consensus        11 l~~~~~d~~i~~~~~~-~~~~~~~------------------------------~~~~~~i~~~~~~~~~~~~~s~~-~d   58 (131)
                      +++|+.+|.|++|++. ++.+.++                              ..|..........|||++++... .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            5677789999999976 3322221                              11233344555678999887665 57


Q ss_pred             CcEEEEECCCcceeeeeec-CCCCeEEEEEcCCCc--EEEEeCCCcE------------------EEEeCCCCeeeEEEe
Q psy3840          59 KTTIIWDAASGQCEQQFSF-HSAPALDVDWQSNTS--FASCSTDQHI------------------HVCKLHSDKPVKSFE  117 (131)
Q Consensus        59 ~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~~~~d~~i------------------~i~d~~~~~~~~~~~  117 (131)
                      ++|.++|+.+++....+.. ....+..++++|+++  ++++..+..+                  ..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            8999999999988776653 356788999999876  5554443333                  447777776655554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=2.2e-05  Score=46.77  Aligned_cols=104  Identities=10%  Similarity=0.072  Sum_probs=70.7

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeee-cCCCC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS-FHSAP   81 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~-~~~~~   81 (131)
                      ++++++++++...++.|..++..+....... ..-.....+++++++.++++....+.+..++...... ..+. ..-..
T Consensus       147 ~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~  225 (260)
T d1rwia_         147 VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNT  225 (260)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCC
T ss_pred             ecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCC
Confidence            4578888887777888999998755544433 3345568899999999888888888888887654432 2222 22245


Q ss_pred             eEEEEEcCCCcE-EEEeCCCcEEEEeCC
Q psy3840          82 ALDVDWQSNTSF-ASCSTDQHIHVCKLH  108 (131)
Q Consensus        82 v~~~~~~~~~~~-~~~~~d~~i~i~d~~  108 (131)
                      ...|++++++.+ ++-..+++|+.++..
T Consensus       226 P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         226 PLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             eEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            688999998774 444555667666543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.37  E-value=4.2e-05  Score=45.97  Aligned_cols=112  Identities=13%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCCCCceeec--ccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeec--CC
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSDGSLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF--HS   79 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~--~~   79 (131)
                      ..++++++++....+.+.+++..++.+..+  ..+......+++.++++.+++....+.|++||. +++.+..+..  ..
T Consensus       121 vd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~  199 (279)
T d1q7fa_         121 VDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGIT  199 (279)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTS
T ss_pred             cccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccc
Confidence            345677777766667788888777766554  334567788999999998888888999999996 4555555532  33


Q ss_pred             CCeEEEEEcCCCcEEEEe-C-CCcEEEEeCCCCeeeEEEe
Q psy3840          80 APALDVDWQSNTSFASCS-T-DQHIHVCKLHSDKPVKSFE  117 (131)
Q Consensus        80 ~~v~~~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~  117 (131)
                      .....+++.+++.++.+. . ++.|.+|+. +++.+.++.
T Consensus       200 ~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~  238 (279)
T d1q7fa_         200 NYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  238 (279)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             cCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEe
Confidence            457889999998854443 3 346999984 577766664

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.34  E-value=1.4e-05  Score=49.96  Aligned_cols=108  Identities=6%  Similarity=0.015  Sum_probs=67.2

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCCCCc---eeecc-----------------cccccEEEEEEcCCCCEEEEEeC-C--
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSDGSL---KSTLG-----------------QHKGPIFALKWNKRGNYILSAGV-D--   58 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~~~~---~~~~~-----------------~~~~~i~~~~~~~~~~~~~s~~~-d--   58 (131)
                      .|+|+++++.+... +++|.+|+.....   +....                 .+......+.++|+|++++++.. +  
T Consensus       199 ~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~  278 (365)
T d1jofa_         199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             EECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC
Confidence            47899998877665 7889999876221   11110                 11223567889999999887753 2  


Q ss_pred             ---CcEEEEECCCcceeee---e---ecCCCCeEEEEEcC-CCc-E-EEEeCCCcEEEEeCCCC
Q psy3840          59 ---KTTIIWDAASGQCEQQ---F---SFHSAPALDVDWQS-NTS-F-ASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        59 ---~~i~~~d~~~~~~~~~---~---~~~~~~v~~~~~~~-~~~-~-~~~~~d~~i~i~d~~~~  110 (131)
                         ..+..|++.....+..   +   .........++++| +++ + ++...++.|.+|+++..
T Consensus       279 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence               2366777654322211   1   11233467799998 677 4 44556789999987644

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.32  E-value=1.7e-05  Score=48.71  Aligned_cols=98  Identities=7%  Similarity=0.157  Sum_probs=68.7

Q ss_pred             EEEeCCCeEEEEcCC--CCce-----eeccc-ccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeE
Q psy3840          12 ATGSYDGYARIWTSD--GSLK-----STLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus        12 ~~~~~d~~i~~~~~~--~~~~-----~~~~~-~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      ++-+..+.|..|++.  +...     ..+.. .......+++.++|+++++....+.|..||...++....+........
T Consensus       192 v~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t  271 (314)
T d1pjxa_         192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPS  271 (314)
T ss_dssp             EEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEE
T ss_pred             EEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEE
Confidence            334456778777754  2211     11111 122346789999999988888889999999988877766666556788


Q ss_pred             EEEEcCCCc--EEEEeCCCcEEEEeCCC
Q psy3840          84 DVDWQSNTS--FASCSTDQHIHVCKLHS  109 (131)
Q Consensus        84 ~~~~~~~~~--~~~~~~d~~i~i~d~~~  109 (131)
                      +++|.|+++  +++...++.|.-+++..
T Consensus       272 ~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         272 NLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            999999875  56667778888888653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=5.8e-05  Score=44.59  Aligned_cols=124  Identities=11%  Similarity=0.026  Sum_probs=70.8

Q ss_pred             ccCCCCEEEE-EeCCCe--EEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CCcEEEE--ECCCcceeeeeec
Q psy3840           4 SRNNGSFLAT-GSYDGY--ARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIW--DAASGQCEQQFSF   77 (131)
Q Consensus         4 ~~~~~~~l~~-~~~d~~--i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~~i~~~--d~~~~~~~~~~~~   77 (131)
                      ++++++.+.. ...++.  |...+..+.....+...........|+|++..++..+. .+...+|  +...+..  ....
T Consensus       134 ~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~  211 (269)
T d2hqsa1         134 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLS  211 (269)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECC
T ss_pred             cccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEee
Confidence            3444554444 334543  45556655555555556667778899999998877655 4444444  4444432  3333


Q ss_pred             CCCCeEEEEEcCCCc-EEE-EeC--CCcEEEEeCCCCeeeEEEecccceEEEEeee
Q psy3840          78 HSAPALDVDWQSNTS-FAS-CST--DQHIHVCKLHSDKPVKSFEGHTRVYYLAMDL  129 (131)
Q Consensus        78 ~~~~v~~~~~~~~~~-~~~-~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  129 (131)
                      .........|+|||+ |+- ...  ...++++++..+...+.............++
T Consensus       212 ~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            445667889999987 543 222  3468999998665544333332233344544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=9.9e-05  Score=43.82  Aligned_cols=106  Identities=8%  Similarity=-0.004  Sum_probs=67.0

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCe
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      ++++++++++....+.+++++.. +..+.... .......++++++++++++-.....+..++.................
T Consensus        64 v~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  142 (260)
T d1rwia_          64 VDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP  142 (260)
T ss_dssp             ECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC
T ss_pred             EcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCc
Confidence            56777777766656666666544 22222222 22456889999999988877667777777765543222211222345


Q ss_pred             EEEEEcCCCc-EEEEeCCCcEEEEeCCCC
Q psy3840          83 LDVDWQSNTS-FASCSTDQHIHVCKLHSD  110 (131)
Q Consensus        83 ~~~~~~~~~~-~~~~~~d~~i~i~d~~~~  110 (131)
                      ..+++.+++. +++...++.|..+|....
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             ceeeecCCCCEeeeccccccccccccccc
Confidence            7889999877 566666778999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.14  E-value=0.0001  Score=45.98  Aligned_cols=107  Identities=10%  Similarity=0.018  Sum_probs=66.0

Q ss_pred             cccCCCCEEEEEeC-CCeEEEEcCC--CCce--eec--ccccccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCcceeee
Q psy3840           3 SSRNNGSFLATGSY-DGYARIWTSD--GSLK--STL--GQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~~i~~~~~~--~~~~--~~~--~~~~~~i~~~~~~~~~~~~~s~~-~d~~i~~~d~~~~~~~~~   74 (131)
                      .|+|+|+++++++. ...|.+|+..  +...  ...  .........+.|+|+++++.+.. .+++|.+|+...++....
T Consensus       151 ~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~  230 (365)
T d1jofa_         151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEE
Confidence            47999999988765 4578888754  3222  111  12234678899999999876555 588999999876542211


Q ss_pred             -----ee--------------cCCCCeEEEEEcCCCc-EEEEe-CC-----CcEEEEeCCC
Q psy3840          75 -----FS--------------FHSAPALDVDWQSNTS-FASCS-TD-----QHIHVCKLHS  109 (131)
Q Consensus        75 -----~~--------------~~~~~v~~~~~~~~~~-~~~~~-~d-----~~i~i~d~~~  109 (131)
                           ..              ........+.++|+++ ++++. .+     ..|..|++..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence                 11              0111245788999988 44432 22     2376777654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.13  E-value=4.8e-05  Score=45.04  Aligned_cols=91  Identities=8%  Similarity=-0.003  Sum_probs=62.8

Q ss_pred             ccCC--CCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCcceeeee
Q psy3840           4 SRNN--GSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV-DK-----TTIIWDAASGQCEQQF   75 (131)
Q Consensus         4 ~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~-d~-----~i~~~d~~~~~~~~~~   75 (131)
                      .+|+  |+.++-.+ ++.|.+.|+.+.....+..+.+......|+|||+.++-... ++     .+.+.+...++....-
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            4888  99988764 56788889987777777777778889999999998875432 22     3667777776553321


Q ss_pred             e------cCCCCeEEEEEcCCCc-EEE
Q psy3840          76 S------FHSAPALDVDWQSNTS-FAS   95 (131)
Q Consensus        76 ~------~~~~~v~~~~~~~~~~-~~~   95 (131)
                      .      ..........|+|+++ ++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             ecCCCccCccccccccccCCCCCEEEE
Confidence            1      1122456778999987 443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.97  E-value=1.4e-05  Score=51.30  Aligned_cols=103  Identities=10%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCccee--------e
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILS-AGVDKTTIIWDAASGQCE--------Q   73 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s-~~~d~~i~~~d~~~~~~~--------~   73 (131)
                      ++++|+++..+ .++.+.+++.. .+.+..+..... ...+.++|+|+++++ +..++++.+||+.+.+..        .
T Consensus       225 ~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         225 AVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             HHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             EecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence            45677777664 35677777655 444555554444 477899999998765 556999999998753210        1


Q ss_pred             eee---cCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          74 QFS---FHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        74 ~~~---~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                      .+.   ...-......|++++. +.+...|.+|..|++.
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            111   1122345568999887 7778889999999974

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.1e-05  Score=48.33  Aligned_cols=93  Identities=10%  Similarity=0.113  Sum_probs=59.8

Q ss_pred             cccCCCCEEEEEeC---------CCeEEEEcCCCCceeecc---cccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcc
Q psy3840           3 SSRNNGSFLATGSY---------DGYARIWTSDGSLKSTLG---QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ   70 (131)
Q Consensus         3 ~~~~~~~~l~~~~~---------d~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~   70 (131)
                      .+|||+++++...+         .+.+.++|+.......+.   .....+....|+|+|+.++-.. ++.+.+.+...+.
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~  145 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ  145 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC
T ss_pred             EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc
Confidence            37999999888643         456788898743333332   2334566678999999887764 5678888877665


Q ss_pred             eeeeeecC-C-----------------CCeEEEEEcCCCc-EEEE
Q psy3840          71 CEQQFSFH-S-----------------APALDVDWQSNTS-FASC   96 (131)
Q Consensus        71 ~~~~~~~~-~-----------------~~v~~~~~~~~~~-~~~~   96 (131)
                      .++..... .                 ..-..+.|+|||+ |+..
T Consensus       146 ~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             eEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            44332211 1                 1125678999987 6544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.1e-05  Score=49.02  Aligned_cols=112  Identities=10%  Similarity=0.142  Sum_probs=71.5

Q ss_pred             ccCCCCEEEEEeCCCeEEEEcCC-CCceeeccc---ccccEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCcc
Q psy3840           4 SRNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ---HKGPIFALKWNKRGNYILSAG---------VDKTTIIWDAASGQ   70 (131)
Q Consensus         4 ~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~---~~~~i~~~~~~~~~~~~~s~~---------~d~~i~~~d~~~~~   70 (131)
                      |.+++.++.. ..+|.|.+||+. ++....+..   ..-.+....++|++++++...         ..+...++|+.++.
T Consensus        24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            5666766654 457889999987 322211211   223566778999999887653         34678899998876


Q ss_pred             eeeeee--cCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEE
Q psy3840          71 CEQQFS--FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF  116 (131)
Q Consensus        71 ~~~~~~--~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  116 (131)
                      ......  .....+....|+|+|+.++-..++.+++.+..++..++..
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt  150 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVV  150 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEE
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEe
Confidence            533222  2234456688999988333345678888888777655443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.73  E-value=0.0012  Score=40.20  Aligned_cols=114  Identities=10%  Similarity=-0.016  Sum_probs=68.8

Q ss_pred             ccCCCCEEEEEeC------CCeEEEEcCCCCceeecccccccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCc-ceeeee
Q psy3840           4 SRNNGSFLATGSY------DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASG-QCEQQF   75 (131)
Q Consensus         4 ~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-s~~~d~~i~~~d~~~~-~~~~~~   75 (131)
                      +.++|++.++...      .+.+..++..++.+..+...-.....++|+|+++.+. +-...+.|..|++... ......
T Consensus       137 ~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~  216 (319)
T d2dg1a1         137 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF  216 (319)
T ss_dssp             ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE
T ss_pred             EEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc
Confidence            4566665554321      1224444544544444433334457799999998655 4456789999987642 211111


Q ss_pred             -------ecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          76 -------SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        76 -------~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                             .......-.+++.++|. +++...++.|.++|. .++.+..+..
T Consensus       217 ~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~  266 (319)
T d2dg1a1         217 GATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  266 (319)
T ss_dssp             EEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             cceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence                   11112356789999988 566667789999995 6888877754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.63  E-value=0.00029  Score=42.60  Aligned_cols=68  Identities=13%  Similarity=0.046  Sum_probs=51.7

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEeCC
Q psy3840          39 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLH  108 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d~~  108 (131)
                      .+..++++|+|+++++...+++|..++... +. ..+......+..+++.+++. +++...++.+..++..
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            578899999999999998899998888553 32 33444556789999999988 5666666777777654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.0027  Score=37.08  Aligned_cols=76  Identities=16%  Similarity=0.220  Sum_probs=54.3

Q ss_pred             eEEEEcCCCCceeecccccccEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EE
Q psy3840          19 YARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVD-K--TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FA   94 (131)
Q Consensus        19 ~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d-~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~   94 (131)
                      .|.+.|..|.....+..+...+...+|||||+.++-.... +  .+.+.+...+.. ..+...........|+|++. ++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeee
Confidence            4777788877777777777888999999999998865442 2  355666655554 34444567788899999987 44


Q ss_pred             E
Q psy3840          95 S   95 (131)
Q Consensus        95 ~   95 (131)
                      .
T Consensus        99 ~   99 (269)
T d2hqsa1          99 F   99 (269)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.19  E-value=0.0074  Score=36.30  Aligned_cols=94  Identities=7%  Similarity=-0.025  Sum_probs=64.2

Q ss_pred             cccCCCCEEEEE-eCCCeEEEEcCCC-------Cce--eecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCccee
Q psy3840           3 SSRNNGSFLATG-SYDGYARIWTSDG-------SLK--STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE   72 (131)
Q Consensus         3 ~~~~~~~~l~~~-~~d~~i~~~~~~~-------~~~--~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~   72 (131)
                      +++++++.+... +..+.|..|++..       +..  ....+..+....++++.+|++.++.-..+.|..||. .++.+
T Consensus       154 ~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~  232 (295)
T d2ghsa1         154 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHI  232 (295)
T ss_dssp             EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEE
T ss_pred             eecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEe
Confidence            467888766554 4477888887641       111  112233455788899999998888878889999995 68888


Q ss_pred             eeeecCCCCeEEEEEc-CCC-c-EEEEe
Q psy3840          73 QQFSFHSAPALDVDWQ-SNT-S-FASCS   97 (131)
Q Consensus        73 ~~~~~~~~~v~~~~~~-~~~-~-~~~~~   97 (131)
                      ..+......+++++|- ++. . ++|..
T Consensus       233 ~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         233 ARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             eEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            8877655678999995 453 3 45443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.18  E-value=0.0079  Score=36.49  Aligned_cols=80  Identities=11%  Similarity=0.097  Sum_probs=51.1

Q ss_pred             EEEEEEcCCCC-----EEEEEeCCCcEEEEECCCcceee------eeecC-CCCeEEEEEcCCCcE-EEEeCCCcEEEEe
Q psy3840          40 IFALKWNKRGN-----YILSAGVDKTTIIWDAASGQCEQ------QFSFH-SAPALDVDWQSNTSF-ASCSTDQHIHVCK  106 (131)
Q Consensus        40 i~~~~~~~~~~-----~~~s~~~d~~i~~~d~~~~~~~~------~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~i~d  106 (131)
                      -..++|+|++.     ++++-...+.|..||+.....+.      .+... ....-.+++..++.+ ++....+.|.+||
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            35788888654     44455567888888875432221      11111 123457889999884 5555678899999


Q ss_pred             CCCCeeeEEEecc
Q psy3840         107 LHSDKPVKSFEGH  119 (131)
Q Consensus       107 ~~~~~~~~~~~~~  119 (131)
                      .+.++.+..+..+
T Consensus       254 p~~g~~~~~i~~p  266 (314)
T d1pjxa_         254 PDGGQPKMRIRCP  266 (314)
T ss_dssp             TTCBSCSEEEECS
T ss_pred             CCCCEEEEEEECC
Confidence            8877766666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.99  E-value=0.017  Score=38.04  Aligned_cols=60  Identities=10%  Similarity=-0.025  Sum_probs=40.7

Q ss_pred             CcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          59 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        59 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      |.+.-+|+.+++.+..................+.++.++.|+.++.+|.++|+.+.+++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence            357777888887776654322111111122456677789999999999999999988863

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.99  E-value=0.013  Score=35.56  Aligned_cols=95  Identities=13%  Similarity=0.074  Sum_probs=60.5

Q ss_pred             cccCCCCEEEEEeCCCeEEEEcCCCCce-eecccccccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCcceeeeeec
Q psy3840           3 SSRNNGSFLATGSYDGYARIWTSDGSLK-STLGQHKGPIFALKWNKRGNYILSAGVD----KTTIIWDAASGQCEQQFSF   77 (131)
Q Consensus         3 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~s~~~d----~~i~~~d~~~~~~~~~~~~   77 (131)
                      +|.++|++.++-...+.|.-|+..++.. ............++++++|+++++...+    +.+...+............
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~  125 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED  125 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC
Confidence            4678888777776788898888875543 3333444567899999999988776432    3344455544443322221


Q ss_pred             --CCCCeEEEEEcCCCcEEEEe
Q psy3840          78 --HSAPALDVDWQSNTSFASCS   97 (131)
Q Consensus        78 --~~~~v~~~~~~~~~~~~~~~   97 (131)
                        .......+.+.++|.+..+.
T Consensus       126 ~~~~~~~nd~~~d~~G~l~vtd  147 (319)
T d2dg1a1         126 LSTAYCIDDMVFDSKGGFYFTD  147 (319)
T ss_dssp             SSSCCCEEEEEECTTSCEEEEE
T ss_pred             CCcccCCcceeEEeccceeecc
Confidence              12356788899998854443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.87  E-value=0.022  Score=37.40  Aligned_cols=60  Identities=8%  Similarity=0.137  Sum_probs=41.1

Q ss_pred             CcEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          59 KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        59 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      |.+.-+|+.+++.+..............-...+.++.++.|+.++.+|.++|+.+.+++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            457778888888877665322111111112345567789999999999999999988764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.77  E-value=0.0068  Score=35.39  Aligned_cols=68  Identities=10%  Similarity=0.035  Sum_probs=45.8

Q ss_pred             EcCC--CCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc-EEEE-eCC-----CcEEEEeCCCCeeeE
Q psy3840          45 WNKR--GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASC-STD-----QHIHVCKLHSDKPVK  114 (131)
Q Consensus        45 ~~~~--~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~-~~d-----~~i~i~d~~~~~~~~  114 (131)
                      .+|+  |+.++-.+ ++.|.+.|+..++.. .+...........|+|||+ |+.. ..+     ..|.+++..+++..+
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            4677  88776553 456888899888754 4555566788899999987 5433 222     247777877775543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.76  E-value=0.032  Score=36.72  Aligned_cols=59  Identities=7%  Similarity=0.015  Sum_probs=38.5

Q ss_pred             cEEEEECCCcceeeeeecCCCCeEEEEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          60 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        60 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      .+.-||+.+++.+..............-...+.++.++.|+.++.+|.++|+.+.++..
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            46667777777776655322111111111234567788999999999999999988764

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.63  E-value=0.025  Score=33.87  Aligned_cols=82  Identities=2%  Similarity=-0.143  Sum_probs=53.8

Q ss_pred             ccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCcc------e--eeeeecCCCCeEEEEEcCCCcE-EEEeCCCcEEEEeC
Q psy3840          38 GPIFALKWNKRGNYILSA-GVDKTTIIWDAASGQ------C--EQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKL  107 (131)
Q Consensus        38 ~~i~~~~~~~~~~~~~s~-~~d~~i~~~d~~~~~------~--~~~~~~~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d~  107 (131)
                      .....+.|+++++.+... +..+.|..+++....      .  .............+++..+|.+ ++.-..+.|..||.
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence            345678999988866554 457788888874311      1  1112223345678889888885 44445678999995


Q ss_pred             CCCeeeEEEeccc
Q psy3840         108 HSDKPVKSFEGHT  120 (131)
Q Consensus       108 ~~~~~~~~~~~~~  120 (131)
                       .++.+..+....
T Consensus       228 -~G~~~~~i~lP~  239 (295)
T d2ghsa1         228 -DGNHIARYEVPG  239 (295)
T ss_dssp             -TCCEEEEEECSC
T ss_pred             -CCcEeeEecCCC
Confidence             588888876543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.93  E-value=0.077  Score=32.40  Aligned_cols=106  Identities=18%  Similarity=0.227  Sum_probs=62.7

Q ss_pred             cCCCCEEEEEeCCC-----------eEEEEcCCCCcee----ecccccccEEEEEEcCCCCEEEEEeCC-CcEEEEECCC
Q psy3840           5 RNNGSFLATGSYDG-----------YARIWTSDGSLKS----TLGQHKGPIFALKWNKRGNYILSAGVD-KTTIIWDAAS   68 (131)
Q Consensus         5 ~~~~~~l~~~~~d~-----------~i~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~s~~~d-~~i~~~d~~~   68 (131)
                      ..+++.++.|+.+.           .+.+||.......    ....+........+.+++..++.|+.+ ..+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            34677777777421           2668887622211    112233334456788999999988765 5799999877


Q ss_pred             ccee--eeeecCCCCeEEEEEcCCCc-EEEEeCC------CcEEEEeCCCCe
Q psy3840          69 GQCE--QQFSFHSAPALDVDWQSNTS-FASCSTD------QHIHVCKLHSDK  111 (131)
Q Consensus        69 ~~~~--~~~~~~~~~v~~~~~~~~~~-~~~~~~d------~~i~i~d~~~~~  111 (131)
                      ..-.  ..+... ..-...+..++++ ++.++.+      ..+.+||..+.+
T Consensus       108 ~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         108 DSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             Cccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            5432  112211 1223456667877 5555532      358899988764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.92  E-value=0.031  Score=36.89  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=41.6

Q ss_pred             CcEEEEECCCcceeeeeecCCCCeEE-EEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          59 KTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        59 ~~i~~~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      |.+.-+|+.+++.+....... ++.. ..-...+.++.++.|+.++.+|.++|+.+.+++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            567778888888877765432 2221 1112345567789999999999999999988864

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.19  E-value=0.15  Score=33.60  Aligned_cols=74  Identities=22%  Similarity=0.291  Sum_probs=44.1

Q ss_pred             CeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-eEEEEEcCCCc
Q psy3840          18 GYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTS   92 (131)
Q Consensus        18 ~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~   92 (131)
                      |.+.-+|+. |+.+....... ++..-..+..+.+++.++.|+.++.+|.++|+.+..+...... -.-+.|..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            445556654 44444433221 1111112235668888999999999999999999888743221 12255666765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.13  E-value=0.2  Score=31.94  Aligned_cols=69  Identities=10%  Similarity=0.053  Sum_probs=48.6

Q ss_pred             EEEEEEcCCCCEEEEEeC-CCcEEEEECCCcce-----------eeeeecCCCCeEEEEEcCCCc-EEEEeCCCcEEEEe
Q psy3840          40 IFALKWNKRGNYILSAGV-DKTTIIWDAASGQC-----------EQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCK  106 (131)
Q Consensus        40 i~~~~~~~~~~~~~s~~~-d~~i~~~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~i~d  106 (131)
                      ...+.++|||+++++++. +.++.++|+++-..           +............-+|+..|. +.+.--|.+|.-|+
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence            356889999999888776 89999999974211           111112234456678888776 56666799999999


Q ss_pred             CC
Q psy3840         107 LH  108 (131)
Q Consensus       107 ~~  108 (131)
                      +.
T Consensus       357 ~~  358 (459)
T d1fwxa2         357 IE  358 (459)
T ss_dssp             HH
T ss_pred             cc
Confidence            84

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.90  E-value=0.054  Score=35.86  Aligned_cols=59  Identities=7%  Similarity=-0.046  Sum_probs=40.0

Q ss_pred             CcEEEEECCCcceeeeeecCCCCeEE-EEEcCCCcEEEEeCCCcEEEEeCCCCeeeEEEec
Q psy3840          59 KTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        59 ~~i~~~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  118 (131)
                      |.+.-||+.+++.+....... +... ..-...+.++.|+.|+.++.+|.++|+.+.++..
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCceecccCCCC-CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            467778888888776554321 2111 1112334566799999999999999999988864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.33  E-value=0.34  Score=30.89  Aligned_cols=28  Identities=4%  Similarity=0.065  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCc--EEEEeCCCcEEEEeCC
Q psy3840          81 PALDVDWQSNTS--FASCSTDQHIHVCKLH  108 (131)
Q Consensus        81 ~v~~~~~~~~~~--~~~~~~d~~i~i~d~~  108 (131)
                      ....+..+|||+  ++++.-+..+.|+|++
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            456788999998  4666678899999986

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.01  E-value=0.44  Score=31.43  Aligned_cols=70  Identities=10%  Similarity=0.067  Sum_probs=47.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCcceeeeeecCC-CCeEEEEEcC---CCcEEEEeC------CCcEEEEeCCCCeeeEEEec
Q psy3840          49 GNYILSAGVDKTTIIWDAASGQCEQQFSFHS-APALDVDWQS---NTSFASCST------DQHIHVCKLHSDKPVKSFEG  118 (131)
Q Consensus        49 ~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~---~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~  118 (131)
                      +..++.++.|+.+.-.|.++++.+..+.... ..-..+.-.|   +++++.+..      .|.|+-+|.++|+.+.++..
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            3468888999999999999999887764211 0001111112   455555543      48899999999999988753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.58  E-value=0.31  Score=31.96  Aligned_cols=45  Identities=16%  Similarity=0.181  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-eEEEEEcCCCc
Q psy3840          48 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTS   92 (131)
Q Consensus        48 ~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~   92 (131)
                      .+.+++.++.|+.++.+|.++|+.+..+...... -.-+.|..+++
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            4567788999999999999999999887643221 12255555776

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.71  E-value=0.57  Score=28.42  Aligned_cols=67  Identities=6%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCCeEEEEEcCC-CcEEEEeCCCcEE
Q psy3840          37 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIH  103 (131)
Q Consensus        37 ~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~d~~i~  103 (131)
                      .+.-.+|..++....+..-.+-|.++++|+.++.++..-+-....+..-+-..+ +-++.-..+|.|.
T Consensus       255 ~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         255 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            355678888998889999999999999999999998777665666654444333 2255555666543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.18  E-value=0.83  Score=29.79  Aligned_cols=45  Identities=18%  Similarity=0.241  Sum_probs=32.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-eEEEEEcCCCc
Q psy3840          48 RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTS   92 (131)
Q Consensus        48 ~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~   92 (131)
                      .+.+++.++.||.++.+|.++|+.+..+...... -.-+.|..+++
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            4667888999999999999999999887643211 11244555665

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.79  E-value=0.77  Score=27.85  Aligned_cols=106  Identities=9%  Similarity=0.079  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCCceeecccccccEEEEEEcCCC---CEEEEEe---CCCcEEEEECCCcc---e-----eeeeec----CC
Q psy3840          18 GYARIWTSDGSLKSTLGQHKGPIFALKWNKRG---NYILSAG---VDKTTIIWDAASGQ---C-----EQQFSF----HS   79 (131)
Q Consensus        18 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~s~~---~d~~i~~~d~~~~~---~-----~~~~~~----~~   79 (131)
                      |.+.+|..+.+.-..+.+|-+....+.+.-+.   ..++-+.   ..+.+++.++....   .     ...+..    ..
T Consensus       176 G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~  255 (327)
T d1utca2         176 GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN  255 (327)
T ss_dssp             EEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTT
T ss_pred             EEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccC
Confidence            56889998888778888887766666554322   2333322   23578888875421   1     011111    12


Q ss_pred             CCeEEEEEcCC-CcEEEEeCCCcEEEEeCCCCeeeEEEecccceE
Q psy3840          80 APALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTRVY  123 (131)
Q Consensus        80 ~~v~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  123 (131)
                      +-.-++..++. +.+..-+.-|.+++||+.++.++..-+.-...+
T Consensus       256 DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~i  300 (327)
T d1utca2         256 DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI  300 (327)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCce
Confidence            33456777775 557777889999999999999887665444443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.45  E-value=0.96  Score=28.25  Aligned_cols=89  Identities=11%  Similarity=0.146  Sum_probs=51.3

Q ss_pred             cccCCCCEEEEEeC-CC----eEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCC----------------Cc
Q psy3840           3 SSRNNGSFLATGSY-DG----YARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVD----------------KT   60 (131)
Q Consensus         3 ~~~~~~~~l~~~~~-d~----~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d----------------~~   60 (131)
                      +++|++++++.+-. +|    .++++|+. ++.+.... .......+.|.++++.++-...+                ..
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~  209 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence            46899999986533 34    58899987 43332111 11223567899999877654322                25


Q ss_pred             EEEEECCCccee--eeeecCC--CCeEEEEEcCCCc
Q psy3840          61 TIIWDAASGQCE--QQFSFHS--APALDVDWQSNTS   92 (131)
Q Consensus        61 i~~~d~~~~~~~--~~~~~~~--~~v~~~~~~~~~~   92 (131)
                      +..+.+.+...-  ..+....  .-+..+..+++++
T Consensus       210 v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~  245 (430)
T d1qfma1         210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR  245 (430)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC
T ss_pred             EEEEECCCCccccccccccccCCceEEeeeccCCcc
Confidence            667777664322  2222222  2345566777876

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.46  E-value=0.93  Score=26.40  Aligned_cols=105  Identities=6%  Similarity=-0.114  Sum_probs=59.3

Q ss_pred             CCEEE-EEeCCCeEEEEcCCCCceeecc-cccccEEEEEEcCCCCEEEEEeC-CCc--EEEEECCCcceeeeeecCCCCe
Q psy3840           8 GSFLA-TGSYDGYARIWTSDGSLKSTLG-QHKGPIFALKWNKRGNYILSAGV-DKT--TIIWDAASGQCEQQFSFHSAPA   82 (131)
Q Consensus         8 ~~~l~-~~~~d~~i~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~s~~~-d~~--i~~~d~~~~~~~~~~~~~~~~v   82 (131)
                      ++.|. +-...+.|.+.++.+.....+. ........++++|...+++-... .+.  |.--++............-...
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P  169 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP  169 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCE
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccccc
Confidence            34444 3344667888887755443333 22356789999996666654433 233  4434554333222222233456


Q ss_pred             EEEEEcCCC-cE-EEEeCCCcEEEEeCCCCee
Q psy3840          83 LDVDWQSNT-SF-ASCSTDQHIHVCKLHSDKP  112 (131)
Q Consensus        83 ~~~~~~~~~-~~-~~~~~d~~i~i~d~~~~~~  112 (131)
                      ..+++++.+ ++ .+-...+.|...|+.....
T Consensus       170 ~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~  201 (263)
T d1npea_         170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             ceEEEeecCcEEEEEeCCCCEEEEEECCCCCe
Confidence            789998764 45 4444567888888875433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.42  E-value=0.85  Score=29.81  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=44.4

Q ss_pred             CeEEEEcCC-CCceeecccccccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeeeeecCCCC-eEEEEEcCCCc
Q psy3840          18 GYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP-ALDVDWQSNTS   92 (131)
Q Consensus        18 ~~i~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~   92 (131)
                      |.+.-||+. ++.+....... +...=...-.+.+++.++.|+.++.+|.++|+.+..+...... -.-+.|..+++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            356667765 55555443221 1111112235778888999999999999999999887643221 11144545665

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.58  E-value=2.2  Score=26.94  Aligned_cols=53  Identities=13%  Similarity=0.182  Sum_probs=37.7

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCcceeee--ee------cCCCCeEEEEEcCC
Q psy3840          38 GPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ--FS------FHSAPALDVDWQSN   90 (131)
Q Consensus        38 ~~i~~~~~~~~~~~~~s~~~d~~i~~~d~~~~~~~~~--~~------~~~~~v~~~~~~~~   90 (131)
                      ...++|+|.|+++++++--..|.|++++..+++....  +.      ........++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4568999999999888775679999998777654221  11      11245688999985

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.22  E-value=2.2  Score=26.56  Aligned_cols=53  Identities=8%  Similarity=0.116  Sum_probs=34.2

Q ss_pred             cEEEEEEcCCCCEEEEE-eCC----CcEEEEECCCcceeeeeecCCCCeEEEEEcCCCc
Q psy3840          39 PIFALKWNKRGNYILSA-GVD----KTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS   92 (131)
Q Consensus        39 ~i~~~~~~~~~~~~~s~-~~d----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~   92 (131)
                      .+....++|++++++.+ +.+    ..++++|+.+++.+..-.. ......+.|.+++.
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~  183 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGK  183 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCC
Confidence            34456789999987743 223    3588999999986542211 11224678998876

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.21  E-value=2.4  Score=26.01  Aligned_cols=121  Identities=14%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             CCCCEEEEEeCCCeEEEEcCCCCceeecccccccEEEEEEcC----CC--CEEEEEe-C-C--CcEEEEECCC-cceeee
Q psy3840           6 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNK----RG--NYILSAG-V-D--KTTIIWDAAS-GQCEQQ   74 (131)
Q Consensus         6 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~--~~~~s~~-~-d--~~i~~~d~~~-~~~~~~   74 (131)
                      |+..+++.....+-|.+||++|+.+..+..  +.+..+....    .+  .-++.++ . +  .++.+|.+.. ...+..
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            345666666666679999999988877653  3455544321    22  2233333 3 2  3577776642 222222


Q ss_pred             eec-------CCCCeEEEEE--cCC-Cc--EEEEeCCCcEEEEeCC---CC----eeeEEEecccceEEEEee
Q psy3840          75 FSF-------HSAPALDVDW--QSN-TS--FASCSTDQHIHVCKLH---SD----KPVKSFEGHTRVYYLAMD  128 (131)
Q Consensus        75 ~~~-------~~~~v~~~~~--~~~-~~--~~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~~  128 (131)
                      +..       ....+..++.  ++. +.  .+....++.+..|.+.   .+    +.++++....+.-.+++|
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvD  188 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAAD  188 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEe
Confidence            221       1123555655  554 54  4566678888888763   22    455566555544455444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=82.68  E-value=3  Score=24.17  Aligned_cols=100  Identities=10%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             CCCEEEEEeCCCeEEEEcCCCCceeeccc----------ccccEEEEEE-cCCCCEEEEEeC-CCcEEEEECCCcceeee
Q psy3840           7 NGSFLATGSYDGYARIWTSDGSLKSTLGQ----------HKGPIFALKW-NKRGNYILSAGV-DKTTIIWDAASGQCEQQ   74 (131)
Q Consensus         7 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~----------~~~~i~~~~~-~~~~~~~~s~~~-d~~i~~~d~~~~~~~~~   74 (131)
                      +.+..++|+......+|-+++..++.+..          ..+.|..+.+ .+....++++.- .|.+++++...|..-..
T Consensus       113 dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~a  192 (313)
T d2hu7a1         113 GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSA  192 (313)
T ss_dssp             SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEE
T ss_pred             CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCcccce
Confidence            45667777777777888776544443322          1123333332 334444556655 77777777665421100


Q ss_pred             -----------e-----------------------ec------CCCCeEEEEEcCCCcE-EEEeCCCcEEEEe
Q psy3840          75 -----------F-----------------------SF------HSAPALDVDWQSNTSF-ASCSTDQHIHVCK  106 (131)
Q Consensus        75 -----------~-----------------------~~------~~~~v~~~~~~~~~~~-~~~~~d~~i~i~d  106 (131)
                                 +                       +.      ....+.-+-+.|++++ +.+-.||.-.+|.
T Consensus       193 y~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         193 SISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             EECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             eEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence                       0                       00      0123445568999885 7888899888886

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=82.07  E-value=3.6  Score=24.65  Aligned_cols=67  Identities=15%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             EcCCCCEEEEEeCCC-----------cEEEEECCCccee--eeeec-CCCCeEEEEEcCCCc-EEEEeCC-CcEEEEeCC
Q psy3840          45 WNKRGNYILSAGVDK-----------TTIIWDAASGQCE--QQFSF-HSAPALDVDWQSNTS-FASCSTD-QHIHVCKLH  108 (131)
Q Consensus        45 ~~~~~~~~~s~~~d~-----------~i~~~d~~~~~~~--~~~~~-~~~~v~~~~~~~~~~-~~~~~~d-~~i~i~d~~  108 (131)
                      ...+++.++.|+.+.           .+.+||+.+++-.  ..... +........+.++++ ++.|+.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            344777777766421           2668999876432  12221 222234567788888 4555444 479999987


Q ss_pred             CCe
Q psy3840         109 SDK  111 (131)
Q Consensus       109 ~~~  111 (131)
                      +..
T Consensus       107 ~~~  109 (387)
T d1k3ia3         107 SDS  109 (387)
T ss_dssp             GTE
T ss_pred             cCc
Confidence            653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.35  E-value=3.4  Score=23.91  Aligned_cols=103  Identities=8%  Similarity=-0.077  Sum_probs=59.7

Q ss_pred             CCEEEEE-eCCCeEEEEcCCCCceee-cccccccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCcceeeeeecCCCCeE
Q psy3840           8 GSFLATG-SYDGYARIWTSDGSLKST-LGQHKGPIFALKWNKRGNYILSAGV--DKTTIIWDAASGQCEQQFSFHSAPAL   83 (131)
Q Consensus         8 ~~~l~~~-~~d~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~s~~~--d~~i~~~d~~~~~~~~~~~~~~~~v~   83 (131)
                      +..|... ...+.|.+.++.+..... +.........++++|...++.-...  .+.|.-.++............-....
T Consensus        88 ~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1          88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  167 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             cceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceee
Confidence            3334433 346678888887655433 3333456788999996555554433  34566666654433222222334568


Q ss_pred             EEEEcCCC-cEE-EEeCCCcEEEEeCCCC
Q psy3840          84 DVDWQSNT-SFA-SCSTDQHIHVCKLHSD  110 (131)
Q Consensus        84 ~~~~~~~~-~~~-~~~~d~~i~i~d~~~~  110 (131)
                      .+++++.+ ++. +-...+.|...++...
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            88898764 454 4455678888888644